Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80816.t1 | XP_003616622.1 | 97.7 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 7.40E-69 | 269.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80816.t1 | P59234 | 78.1 | 128 | 28 | 0 | 1 | 128 | 1 | 128 | 1.0e-55 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80816.t1 | G7KGZ8 | 97.7 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 5.3e-69 | 269.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene80816 | 0.817774 | 2.77E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene80816 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene80816 | 0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene80816 | 0.813497 | 2.48E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene80816 | 0.80085 | 1.19E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene80816 | 0.82239 | 2.43E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene80816 | 0.824455 | 8.00E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene80816 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene80816 | 0.803872 | 2.83E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene80816 | 0.810469 | 1.14E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene80816 | 0.81183 | 5.75E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene80816 | 0.855219 | 7.30E-62 | -1.69E-46 |
| MS.gene055864 | MS.gene80816 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene80816 | 0.805304 | 1.42E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene80816 | 0.850774 | 1.37E-60 | -1.69E-46 |
| MS.gene057034 | MS.gene80816 | 0.818504 | 1.89E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene80816 | 0.828539 | 8.50E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene80816 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene80816 | -0.801459 | 8.92E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene80816 | 0.818825 | 1.60E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene80816 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene80816 | 0.813647 | 2.30E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene80816 | 0.809886 | 1.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80816.t1 | MTR_5g082490 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 7.76e-93 | 264 |
| MS.gene80816.t1 | MTR_3g070330 | 77.344 | 128 | 29 | 0 | 1 | 128 | 24 | 151 | 6.91e-72 | 212 |
| MS.gene80816.t1 | MTR_3g070330 | 81.373 | 102 | 19 | 0 | 1 | 102 | 24 | 125 | 3.24e-59 | 179 |
| MS.gene80816.t1 | MTR_7g068250 | 69.027 | 113 | 35 | 0 | 1 | 113 | 1 | 113 | 6.50e-56 | 170 |
| MS.gene80816.t1 | MTR_2g078670 | 56.589 | 129 | 56 | 0 | 1 | 129 | 1 | 129 | 2.42e-47 | 149 |
| MS.gene80816.t1 | MTR_8g058785 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 6.47e-44 | 140 |
| MS.gene80816.t1 | MTR_8g061270 | 60.952 | 105 | 41 | 0 | 1 | 105 | 1 | 105 | 6.47e-44 | 140 |
| MS.gene80816.t1 | MTR_4g088505 | 57.143 | 105 | 45 | 0 | 1 | 105 | 1 | 105 | 2.52e-41 | 134 |
| MS.gene80816.t1 | MTR_8g027255 | 50.505 | 99 | 49 | 0 | 12 | 110 | 8 | 106 | 2.04e-33 | 113 |
| MS.gene80816.t1 | MTR_3g091840 | 52.128 | 94 | 45 | 0 | 12 | 105 | 8 | 101 | 2.53e-33 | 112 |
| MS.gene80816.t1 | MTR_4g088505 | 55.422 | 83 | 37 | 0 | 1 | 83 | 1 | 83 | 1.45e-29 | 103 |
| MS.gene80816.t1 | MTR_1g077750 | 46.429 | 84 | 45 | 0 | 12 | 95 | 8 | 91 | 1.01e-26 | 96.3 |
| MS.gene80816.t1 | MTR_1g077760 | 51.852 | 54 | 26 | 0 | 48 | 101 | 1 | 54 | 3.21e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80816.t1 | AT2G40110 | 78.462 | 130 | 27 | 1 | 1 | 129 | 1 | 130 | 4.33e-72 | 211 |
| MS.gene80816.t1 | AT3G11230 | 72.093 | 129 | 36 | 0 | 1 | 129 | 1 | 129 | 1.50e-67 | 200 |
| MS.gene80816.t1 | AT3G11230 | 72.093 | 129 | 36 | 0 | 1 | 129 | 34 | 162 | 3.72e-67 | 200 |
| MS.gene80816.t1 | AT2G40110 | 79.612 | 103 | 21 | 0 | 1 | 103 | 1 | 103 | 4.47e-58 | 175 |
| MS.gene80816.t1 | AT3G11230 | 75.728 | 103 | 25 | 0 | 1 | 103 | 1 | 103 | 3.73e-54 | 165 |
| MS.gene80816.t1 | AT3G11230 | 76.471 | 102 | 24 | 0 | 1 | 102 | 34 | 135 | 5.51e-54 | 166 |
| MS.gene80816.t1 | AT3G08990 | 59.375 | 128 | 52 | 0 | 1 | 128 | 1 | 128 | 2.86e-53 | 164 |
| MS.gene80816.t1 | AT3G08990 | 59.375 | 128 | 52 | 0 | 1 | 128 | 1 | 128 | 2.86e-53 | 164 |
| MS.gene80816.t1 | AT3G08990 | 59.375 | 128 | 52 | 0 | 1 | 128 | 1 | 128 | 2.86e-53 | 164 |
| MS.gene80816.t1 | AT3G55890 | 62.016 | 129 | 41 | 1 | 1 | 129 | 1 | 121 | 3.68e-53 | 163 |
| MS.gene80816.t1 | AT3G55890 | 62.016 | 129 | 41 | 1 | 1 | 129 | 1 | 121 | 3.68e-53 | 163 |
| MS.gene80816.t1 | AT5G53940 | 58.140 | 129 | 54 | 0 | 1 | 129 | 1 | 129 | 4.74e-50 | 155 |
| MS.gene80816.t1 | AT3G55890 | 67.327 | 101 | 33 | 0 | 1 | 101 | 1 | 101 | 5.35e-47 | 147 |
| MS.gene80816.t1 | AT3G55890 | 67.327 | 101 | 33 | 0 | 1 | 101 | 1 | 101 | 5.35e-47 | 147 |
| MS.gene80816.t1 | AT2G40110 | 75.904 | 83 | 20 | 0 | 1 | 83 | 1 | 83 | 2.29e-43 | 137 |
| MS.gene80816.t1 | AT2G40110 | 75.904 | 83 | 20 | 0 | 1 | 83 | 1 | 83 | 2.29e-43 | 137 |
| MS.gene80816.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.14e-35 | 117 |
| MS.gene80816.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.14e-35 | 117 |
| MS.gene80816.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.14e-35 | 117 |
| MS.gene80816.t1 | AT4G27745 | 53.061 | 98 | 46 | 0 | 12 | 109 | 8 | 105 | 5.14e-35 | 117 |
| MS.gene80816.t1 | AT4G27740 | 41.935 | 93 | 54 | 0 | 14 | 106 | 10 | 102 | 3.66e-24 | 89.7 |
Find 30 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTGATGGCAGCAATTAT+TGG | 0.259271 | 5.3:-66738410 | MS.gene80816:CDS |
| TACAGTGTGAATGTTTCTAT+TGG | 0.322176 | 5.3:-66738936 | MS.gene80816:intron |
| TTGACCAGGTTCAAGGTGTC+TGG | 0.365136 | 5.3:-66738432 | MS.gene80816:intron |
| TCCTGATGGCAGCAATTATT+GGG | 0.368015 | 5.3:-66738409 | MS.gene80816:CDS |
| TGTTTCTATTGGAGAATTAG+AGG | 0.372709 | 5.3:-66738925 | MS.gene80816:CDS |
| TTGTTTGTTGTTCATCTTGA+AGG | 0.447111 | 5.3:-66741236 | MS.gene80816:CDS |
| ACCCAATAATTGCTGCCATC+AGG | 0.450327 | 5.3:+66738408 | None:intergenic |
| CAAGGATAACTTACACCTTA+CGG | 0.472783 | 5.3:+66739215 | None:intergenic |
| GAGGACAGAAATATGATGAC+TGG | 0.475545 | 5.3:-66738906 | MS.gene80816:CDS |
| TTGTGAAGATGTTGTTTCAA+AGG | 0.476254 | 5.3:-66741171 | MS.gene80816:intron |
| TTCAAGGTGTCTGGTCCTGA+TGG | 0.507863 | 5.3:-66738423 | MS.gene80816:CDS |
| CAGGCTTTCCACAGCAGACA+TGG | 0.524156 | 5.3:-66739253 | MS.gene80816:CDS |
| TTTCAACACCATGTGTTGCA+TGG | 0.544712 | 5.3:+66738382 | None:intergenic |
| TTCTTAGTTGAATTATGGGA+AGG | 0.545484 | 5.3:-66741259 | None:intergenic |
| GTCGGTTGTGGATCAATCCT+CGG | 0.549786 | 5.3:-66738855 | MS.gene80816:CDS |
| TTGTTGTTCATCTTGAAGGA+AGG | 0.554689 | 5.3:-66741232 | MS.gene80816:CDS |
| AAAAGCCAGAAGTACAAAGA+AGG | 0.556508 | 5.3:-66738726 | MS.gene80816:CDS |
| TTTCCACAGCAGACATGGGA+AGG | 0.566067 | 5.3:-66739248 | MS.gene80816:CDS |
| AAGGAAAATCTGTTCTTGAA+CGG | 0.572251 | 5.3:-66738707 | MS.gene80816:intron |
| GTTGTGGATCAATCCTCGGT+TGG | 0.576717 | 5.3:-66738851 | MS.gene80816:CDS |
| AGGCTTTCCACAGCAGACAT+GGG | 0.597650 | 5.3:-66739252 | MS.gene80816:CDS |
| AAGCCTTCCCATGTCTGCTG+TGG | 0.600078 | 5.3:+66739245 | None:intergenic |
| TGGGTTAGCCATGCAACACA+TGG | 0.601436 | 5.3:-66738390 | MS.gene80816:CDS |
| ACATCTTCACAAAGAGCAAG+AGG | 0.603930 | 5.3:+66741182 | None:intergenic |
| AGGACAGAAATATGATGACT+GGG | 0.607783 | 5.3:-66738905 | MS.gene80816:CDS |
| CATCTTCACAAAGAGCAAGA+GGG | 0.619095 | 5.3:+66741183 | None:intergenic |
| ATCTTCACAAAGAGCAAGAG+GGG | 0.623684 | 5.3:+66741184 | None:intergenic |
| GAAGGCTTATCTCTTCCGTA+AGG | 0.633340 | 5.3:-66739230 | MS.gene80816:CDS |
| GTCTTACATATGTCCAACCG+AGG | 0.682634 | 5.3:+66738838 | None:intergenic |
| GATGACTGGGATGCATACTG+TGG | 0.714746 | 5.3:-66738892 | MS.gene80816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGTGAATTTATAAATTA+GGG | - | chr5.3:66739348-66739367 | MS.gene80816:intron | 10.0% |
| !! | TTAAAGTGAATTTATAAATT+AGG | - | chr5.3:66739347-66739366 | MS.gene80816:intron | 10.0% |
| !! | AAAGTGAATTTATAAATTAG+GGG | - | chr5.3:66739349-66739368 | MS.gene80816:intron | 15.0% |
| !! | AATAAGTAAAGATAAACAAT+CGG | - | chr5.3:66739253-66739272 | MS.gene80816:CDS | 15.0% |
| !! | TCATAAAAAACATCAAAATT+GGG | + | chr5.3:66738488-66738507 | None:intergenic | 15.0% |
| !!! | ACTTTTTCTTAATGTTTTAA+CGG | - | chr5.3:66740240-66740259 | MS.gene80816:intron | 15.0% |
| !!! | ATTAAGAAAAAGTTGAATTT+TGG | + | chr5.3:66740233-66740252 | None:intergenic | 15.0% |
| !!! | ATTGATAATAATTAGAACAA+GGG | - | chr5.3:66741032-66741051 | MS.gene80816:intron | 15.0% |
| !!! | ATTTGGTTTATAACAATTTA+GGG | - | chr5.3:66739057-66739076 | MS.gene80816:intron | 15.0% |
| !!! | ATTTGTAATTTATTTTACTG+TGG | - | chr5.3:66738977-66738996 | MS.gene80816:intron | 15.0% |
| !!! | TATTTGGTTTATAACAATTT+AGG | - | chr5.3:66739056-66739075 | MS.gene80816:intron | 15.0% |
| !!! | TTTAAGTTTTTGTTTATGTT+CGG | - | chr5.3:66738522-66738541 | MS.gene80816:intron | 15.0% |
| !! | ATATGTATATATATTCTGAC+TGG | - | chr5.3:66740307-66740326 | MS.gene80816:intron | 20.0% |
| !! | CTCATAAAAAACATCAAAAT+TGG | + | chr5.3:66738489-66738508 | None:intergenic | 20.0% |
| !!! | ACAGTTATGTTTTTTATTCA+TGG | - | chr5.3:66740556-66740575 | MS.gene80816:intron | 20.0% |
| !!! | CATTGATAATAATTAGAACA+AGG | - | chr5.3:66741031-66741050 | MS.gene80816:intron | 20.0% |
| !!! | TATAGTTTTGTTGAAGTTTT+AGG | - | chr5.3:66738678-66738697 | MS.gene80816:intron | 20.0% |
| !!! | TGCTATTAACTAAAACTTTT+TGG | - | chr5.3:66739727-66739746 | MS.gene80816:intron | 20.0% |
| ! | ACTAACTGCAAAATATAATG+CGG | + | chr5.3:66740613-66740632 | None:intergenic | 25.0% |
| ! | AGATGAAAGACAATAACATA+AGG | + | chr5.3:66739598-66739617 | None:intergenic | 25.0% |
| ! | ATAATCACAGTTTCAGTTTA+TGG | - | chr5.3:66739009-66739028 | MS.gene80816:intron | 25.0% |
| ! | GATGATATTTCCATTTAAAC+CGG | + | chr5.3:66740173-66740192 | None:intergenic | 25.0% |
| ! | TAAGCATTTATAAGTTTCCA+AGG | + | chr5.3:66739657-66739676 | None:intergenic | 25.0% |
| !! | AAACCATTCTATTCTGATTT+TGG | - | chr5.3:66740085-66740104 | MS.gene80816:intron | 25.0% |
| !! | ACAGCTTAAATTTTGTGTTA+AGG | - | chr5.3:66739184-66739203 | MS.gene80816:intron | 25.0% |
| !! | ATGCTTAAGTACCTTTATTT+CGG | + | chr5.3:66739384-66739403 | None:intergenic | 25.0% |
| !!! | ATAAACGACCAAGTTTTTTA+GGG | - | chr5.3:66740147-66740166 | MS.gene80816:intron | 25.0% |
| !!! | ATGTTTTTTATTCATGGCTT+TGG | - | chr5.3:66740562-66740581 | MS.gene80816:intron | 25.0% |
| !!! | GTAATTTATTTTACTGTGGT+GGG | - | chr5.3:66738981-66739000 | MS.gene80816:intron | 25.0% |
| !!! | GTTTTAACGGTTTTTTTAGT+TGG | - | chr5.3:66740253-66740272 | MS.gene80816:intron | 25.0% |
| !!! | TATAAACGACCAAGTTTTTT+AGG | - | chr5.3:66740146-66740165 | MS.gene80816:intron | 25.0% |
| !!! | TGTAATTTATTTTACTGTGG+TGG | - | chr5.3:66738980-66738999 | MS.gene80816:intron | 25.0% |
| !!! | TGTTTTTTATTCATGGCTTT+GGG | - | chr5.3:66740563-66740582 | MS.gene80816:intron | 25.0% |
| AAGGAAAATCTGTTCTTGAA+CGG | - | chr5.3:66740900-66740919 | MS.gene80816:intron | 30.0% | |
| ACCTTTGATTACAAACTACA+AGG | + | chr5.3:66740526-66740545 | None:intergenic | 30.0% | |
| AGACAATAACATAAGGTTGA+AGG | + | chr5.3:66739591-66739610 | None:intergenic | 30.0% | |
| ATGGTCGGAAATTAAAGTTA+TGG | - | chr5.3:66739214-66739233 | MS.gene80816:intron | 30.0% | |
| CATTAAGTTAAGTTACCCTT+TGG | - | chr5.3:66740833-66740852 | MS.gene80816:intron | 30.0% | |
| GAACCAAAATCAGAATAGAA+TGG | + | chr5.3:66740091-66740110 | None:intergenic | 30.0% | |
| GAATTTATAAATTAGGGGTG+AGG | - | chr5.3:66739354-66739373 | MS.gene80816:intron | 30.0% | |
| GATTTCGGTTTCATTGAAAA+TGG | + | chr5.3:66740466-66740485 | None:intergenic | 30.0% | |
| GTGAATTATGTAGATTGTAG+AGG | + | chr5.3:66740017-66740036 | None:intergenic | 30.0% | |
| TCACTGAGCTGTTATATTAT+TGG | - | chr5.3:66740033-66740052 | MS.gene80816:intron | 30.0% | |
| TCGAAACTTCAACAAAACTA+CGG | + | chr5.3:66738581-66738600 | None:intergenic | 30.0% | |
| TCGAAACTTCAACAAAACTA+TGG | + | chr5.3:66738581-66738600 | None:intergenic | 30.0% | |
| TGGAATCGACATTTCTTTAT+TGG | - | chr5.3:66740273-66740292 | MS.gene80816:intron | 30.0% | |
| TGGTTTCATATATTTCACAG+AGG | - | chr5.3:66740053-66740072 | MS.gene80816:intron | 30.0% | |
| TGTACTTCAGAATTAGACAA+TGG | + | chr5.3:66739904-66739923 | None:intergenic | 30.0% | |
| TTTAATCATCATGCTTCAAC+TGG | + | chr5.3:66739332-66739351 | None:intergenic | 30.0% | |
| TTTCAGTTTATGGTGATAGT+TGG | - | chr5.3:66739019-66739038 | MS.gene80816:intron | 30.0% | |
| TTTGTGTACCAATACACAAA+TGG | + | chr5.3:66739528-66739547 | None:intergenic | 30.0% | |
| TTTGTGTTAAGGTACACAAA+TGG | - | chr5.3:66739195-66739214 | MS.gene80816:intron | 30.0% | |
| ! | ATTTTCCTTCTTTGTACTTC+TGG | + | chr5.3:66740889-66740908 | None:intergenic | 30.0% |
| ! | GTTTGTAATCAAAGGTGTAA+AGG | - | chr5.3:66740530-66740549 | MS.gene80816:intron | 30.0% |
| ! | TACAGTGTGAATGTTTCTAT+TGG | - | chr5.3:66740671-66740690 | MS.gene80816:intron | 30.0% |
| ! | TGTTTCTATTGGAGAATTAG+AGG | - | chr5.3:66740682-66740701 | MS.gene80816:intron | 30.0% |
| !! | GAAATAAAGGTACTTAAGCA+TGG | - | chr5.3:66739383-66739402 | MS.gene80816:intron | 30.0% |
| !! | TTGTGAAGATGTTGTTTCAA+AGG | - | chr5.3:66738436-66738455 | MS.gene80816:intron | 30.0% |
| !! | TTGTTTGTTGTTCATCTTGA+AGG | - | chr5.3:66738371-66738390 | MS.gene80816:CDS | 30.0% |
| ACTTAATGCAGCATAGAAAC+AGG | + | chr5.3:66740821-66740840 | None:intergenic | 35.0% | |
| AGAAGTTACTTCTGTGCAAA+AGG | - | chr5.3:66739839-66739858 | MS.gene80816:intron | 35.0% | |
| AGATAAACAATCGGAGTGAT+CGG | - | chr5.3:66739262-66739281 | MS.gene80816:intron | 35.0% | |
| AGCGATATATAAGTATGTCG+TGG | - | chr5.3:66741133-66741152 | MS.gene80816:intron | 35.0% | |
| AGGACAGAAATATGATGACT+GGG | - | chr5.3:66740702-66740721 | MS.gene80816:intron | 35.0% | |
| ATGCAGGACAAAAGGTTAAA+GGG | + | chr5.3:66740494-66740513 | None:intergenic | 35.0% | |
| ATGGTGAAACCAAAGTTATC+AGG | + | chr5.3:66740447-66740466 | None:intergenic | 35.0% | |
| CAACTATTCTCAGGATGTAT+CGG | + | chr5.3:66739452-66739471 | None:intergenic | 35.0% | |
| CAAGGATAACTTACACCTTA+CGG | + | chr5.3:66740395-66740414 | None:intergenic | 35.0% | |
| CAATAACATAAGGTTGAAGG+TGG | + | chr5.3:66739588-66739607 | None:intergenic | 35.0% | |
| CAATGGTGCAAGATACAAAA+TGG | - | chr5.3:66739414-66739433 | MS.gene80816:intron | 35.0% | |
| GCAAATAGTCCTTCAAAAGT+AGG | + | chr5.3:66739880-66739899 | None:intergenic | 35.0% | |
| GGATAACAGCTTTGCTTATT+TGG | - | chr5.3:66739040-66739059 | MS.gene80816:intron | 35.0% | |
| GTCATCAACCATTTGTGTAT+TGG | - | chr5.3:66739517-66739536 | MS.gene80816:intron | 35.0% | |
| GTCGGAAATTAAAGTTATGG+TGG | - | chr5.3:66739217-66739236 | MS.gene80816:intron | 35.0% | |
| GTGTAAGTTATCCTTGACAT+TGG | - | chr5.3:66740399-66740418 | MS.gene80816:intron | 35.0% | |
| TATGAGTGTATCTGACAAAG+TGG | - | chr5.3:66739768-66739787 | MS.gene80816:intron | 35.0% | |
| TCGAAACTTCAACAAAGCTA+TGG | + | chr5.3:66738772-66738791 | None:intergenic | 35.0% | |
| TGAAGGTGGTCATTAAATCA+AGG | + | chr5.3:66739574-66739593 | None:intergenic | 35.0% | |
| TGTTAAGGTACACAAATGGT+CGG | - | chr5.3:66739199-66739218 | MS.gene80816:intron | 35.0% | |
| TTACTTCTGTGCAAAAGGAA+TGG | - | chr5.3:66739844-66739863 | MS.gene80816:intron | 35.0% | |
| TTGTTGAAGTTTCGACGATT+AGG | - | chr5.3:66738586-66738605 | MS.gene80816:intron | 35.0% | |
| ! | AAAAGCCAGAAGTACAAAGA+AGG | - | chr5.3:66740881-66740900 | MS.gene80816:intron | 35.0% |
| ! | AAAGTTATGGTGGAACTAGA+TGG | - | chr5.3:66739227-66739246 | MS.gene80816:intron | 35.0% |
| ! | ACTTGACTGTATTACTGGTT+GGG | - | chr5.3:66739299-66739318 | MS.gene80816:intron | 35.0% |
| ! | CACGCTTGATAATCGATTTA+AGG | - | chr5.3:66739146-66739165 | MS.gene80816:intron | 35.0% |
| ! | CTTTTGTCCTGCATCATTTT+GGG | - | chr5.3:66740500-66740519 | MS.gene80816:intron | 35.0% |
| ! | GCCTTGTAGTTTGTAATCAA+AGG | - | chr5.3:66740522-66740541 | MS.gene80816:intron | 35.0% |
| ! | TTGTTGTTCATCTTGAAGGA+AGG | - | chr5.3:66738375-66738394 | MS.gene80816:CDS | 35.0% |
| !! | GGAAGTAATCCTACTTTTGA+AGG | - | chr5.3:66739868-66739887 | MS.gene80816:intron | 35.0% |
| !! | GTTTTGGCATTAGCACAATT+TGG | + | chr5.3:66739624-66739643 | None:intergenic | 35.0% |
| !! | TTACTTGTGCTGTTTCATTC+AGG | - | chr5.3:66740335-66740354 | MS.gene80816:intron | 35.0% |
| !!! | TTTTTTAGGGCCGGTTTAAA+TGG | - | chr5.3:66740160-66740179 | MS.gene80816:intron | 35.0% |
| AATCAGATTCGCAGTGACTT+CGG | + | chr5.3:66738943-66738962 | None:intergenic | 40.0% | |
| ACATCTTCACAAAGAGCAAG+AGG | + | chr5.3:66738428-66738447 | None:intergenic | 40.0% | |
| AGTCTCCTGAAAGAAACCAA+AGG | + | chr5.3:66740852-66740871 | None:intergenic | 40.0% | |
| ATCTTCACAAAGAGCAAGAG+GGG | + | chr5.3:66738426-66738445 | None:intergenic | 40.0% | |
| CACTTGACTGTATTACTGGT+TGG | - | chr5.3:66739298-66739317 | MS.gene80816:intron | 40.0% | |
| CATCTTCACAAAGAGCAAGA+GGG | + | chr5.3:66738427-66738446 | None:intergenic | 40.0% | |
| CCAAAACATGTATGCTTCCT+TGG | - | chr5.3:66739637-66739656 | MS.gene80816:intron | 40.0% | |
| CCAAAATGATGCAGGACAAA+AGG | + | chr5.3:66740502-66740521 | None:intergenic | 40.0% | |
| GAGGACAGAAATATGATGAC+TGG | - | chr5.3:66740701-66740720 | MS.gene80816:intron | 40.0% | |
| GATGCAGGACAAAAGGTTAA+AGG | + | chr5.3:66740495-66740514 | None:intergenic | 40.0% | |
| GGTACTTAAGCATGGTATTG+TGG | - | chr5.3:66739391-66739410 | MS.gene80816:intron | 40.0% | |
| GGTGAGGTTATCCGAAATAA+AGG | - | chr5.3:66739370-66739389 | MS.gene80816:intron | 40.0% | |
| GGTTAAAGGGTGGAAGATTT+CGG | + | chr5.3:66740481-66740500 | None:intergenic | 40.0% | |
| GTCTCCTGAAAGAAACCAAA+GGG | + | chr5.3:66740851-66740870 | None:intergenic | 40.0% | |
| GTGTTCTGTCCTGATAACTT+TGG | - | chr5.3:66740435-66740454 | MS.gene80816:intron | 40.0% | |
| TAAACCGGCCCTAAAAAACT+TGG | + | chr5.3:66740158-66740177 | None:intergenic | 40.0% | |
| TAAGCATGGTATTGTGGCAA+TGG | - | chr5.3:66739397-66739416 | MS.gene80816:intron | 40.0% | |
| TAATTACTCTGTCAGTGTCG+TGG | - | chr5.3:66741068-66741087 | MS.gene80816:intron | 40.0% | |
| TATAATGCGGCTAGAGCTAA+TGG | + | chr5.3:66740600-66740619 | None:intergenic | 40.0% | |
| TATATCGCTCAAAACCCATG+TGG | + | chr5.3:66741122-66741141 | None:intergenic | 40.0% | |
| TCCTGATGGCAGCAATTATT+GGG | - | chr5.3:66741198-66741217 | MS.gene80816:CDS | 40.0% | |
| TGCCAAACATCAACACATGT+CGG | - | chr5.3:66741094-66741113 | MS.gene80816:intron | 40.0% | |
| TTTCAACACCATGTGTTGCA+TGG | + | chr5.3:66741228-66741247 | None:intergenic | 40.0% | |
| ! | CATCCTGAGAATAGTTGATG+CGG | - | chr5.3:66739455-66739474 | MS.gene80816:intron | 40.0% |
| ! | CCTTTTGTCCTGCATCATTT+TGG | - | chr5.3:66740499-66740518 | MS.gene80816:intron | 40.0% |
| ! | GAGTTTTTGCTCTTTTGACC+AGG | - | chr5.3:66741161-66741180 | MS.gene80816:intron | 40.0% |
| ! | GTTACCCTTTGGTTTCTTTC+AGG | - | chr5.3:66740844-66740863 | MS.gene80816:intron | 40.0% |
| ! | TCGATTTAAGGCTGCGTTTA+TGG | - | chr5.3:66739158-66739177 | MS.gene80816:intron | 40.0% |
| !! | AGTGAAAGGTACCAATGTCA+AGG | + | chr5.3:66740413-66740432 | None:intergenic | 40.0% |
| !! | CCAAGGAAGCATACATGTTT+TGG | + | chr5.3:66739640-66739659 | None:intergenic | 40.0% |
| ACCCAATAATTGCTGCCATC+AGG | + | chr5.3:66741202-66741221 | None:intergenic | 45.0% | |
| AGGACAGAACACGTAGTGAA+AGG | + | chr5.3:66740427-66740446 | None:intergenic | 45.0% | |
| CAGGACAAAAGGTTAAAGGG+TGG | + | chr5.3:66740491-66740510 | None:intergenic | 45.0% | |
| CTACCGCATCAACTATTCTC+AGG | + | chr5.3:66739461-66739480 | None:intergenic | 45.0% | |
| CTTCTGTGCAAAAGGAATGG+TGG | - | chr5.3:66739847-66739866 | MS.gene80816:intron | 45.0% | |
| GAAGGCTTATCTCTTCCGTA+AGG | - | chr5.3:66740377-66740396 | MS.gene80816:intron | 45.0% | |
| GGCTAGAGCTAATGGAGATT+CGG | + | chr5.3:66740592-66740611 | None:intergenic | 45.0% | |
| GTCCTGATGGCAGCAATTAT+TGG | - | chr5.3:66741197-66741216 | MS.gene80816:CDS | 45.0% | |
| GTCTTACATATGTCCAACCG+AGG | + | chr5.3:66740772-66740791 | None:intergenic | 45.0% | |
| TACAAGGCCCAAAATGATGC+AGG | + | chr5.3:66740510-66740529 | None:intergenic | 45.0% | |
| TAGAGCTAATGGAGATTCGG+AGG | + | chr5.3:66740589-66740608 | None:intergenic | 45.0% | |
| ! | CACCGACATGTGTTGATGTT+TGG | + | chr5.3:66741099-66741118 | None:intergenic | 45.0% |
| ! | GAGAATAGTTGATGCGGTAG+TGG | - | chr5.3:66739461-66739480 | MS.gene80816:intron | 45.0% |
| ! | GTGGCTGACATTTTCTGTGT+CGG | - | chr5.3:66740734-66740753 | MS.gene80816:intron | 45.0% |
| ! | TGCTCTTTTGACCAGGTTCA+AGG | - | chr5.3:66741168-66741187 | MS.gene80816:intron | 45.0% |
| !!! | ACGACCAAGTTTTTTAGGGC+CGG | - | chr5.3:66740151-66740170 | MS.gene80816:intron | 45.0% |
| !!! | GACATTTTCTGTGTCGGTTG+TGG | - | chr5.3:66740740-66740759 | MS.gene80816:intron | 45.0% |
| AAACTGCCGAAACAGCACCA+TGG | - | chr5.3:66739489-66739508 | MS.gene80816:intron | 50.0% | |
| AGGCTTTCCACAGCAGACAT+GGG | - | chr5.3:66740355-66740374 | MS.gene80816:intron | 50.0% | |
| CGATGACGCGCTATGATTCA+TGG | - | chr5.3:66738629-66738648 | MS.gene80816:intron | 50.0% | |
| GATGACTGGGATGCATACTG+TGG | - | chr5.3:66740715-66740734 | MS.gene80816:intron | 50.0% | |
| GTCGGTTGTGGATCAATCCT+CGG | - | chr5.3:66740752-66740771 | MS.gene80816:intron | 50.0% | |
| GTTGTGGATCAATCCTCGGT+TGG | - | chr5.3:66740756-66740775 | MS.gene80816:intron | 50.0% | |
| TTTCCACAGCAGACATGGGA+AGG | - | chr5.3:66740359-66740378 | MS.gene80816:intron | 50.0% | |
| ! | GGGGCACTTGACTGTATTAC+TGG | - | chr5.3:66739294-66739313 | MS.gene80816:intron | 50.0% |
| ! | TTCAAGGTGTCTGGTCCTGA+TGG | - | chr5.3:66741184-66741203 | MS.gene80816:CDS | 50.0% |
| ! | TTGACCAGGTTCAAGGTGTC+TGG | - | chr5.3:66741175-66741194 | MS.gene80816:CDS | 50.0% |
| !! | AACACATGTCGGTGCCACAT+GGG | - | chr5.3:66741105-66741124 | MS.gene80816:intron | 50.0% |
| !! | TGGGTTAGCCATGCAACACA+TGG | - | chr5.3:66741217-66741236 | MS.gene80816:CDS | 50.0% |
| !! | TGGTGCTGTTTCGGCAGTTT+CGG | + | chr5.3:66739489-66739508 | None:intergenic | 50.0% |
| AAGCCTTCCCATGTCTGCTG+TGG | + | chr5.3:66740365-66740384 | None:intergenic | 55.0% | |
| AATCGGAGTGATCGGCCTTG+AGG | - | chr5.3:66739270-66739289 | MS.gene80816:intron | 55.0% | |
| AGGACCAGACACCTTGAACC+TGG | + | chr5.3:66741182-66741201 | None:intergenic | 55.0% | |
| CAGGCTTTCCACAGCAGACA+TGG | - | chr5.3:66740354-66740373 | MS.gene80816:intron | 55.0% | |
| !! | ATGGTTGATGACCGCTGCCA+TGG | + | chr5.3:66739509-66739528 | None:intergenic | 55.0% |
| !! | CAACACATGTCGGTGCCACA+TGG | - | chr5.3:66741104-66741123 | MS.gene80816:intron | 55.0% |
| CCGAAACAGCACCATGGCAG+CGG | - | chr5.3:66739495-66739514 | MS.gene80816:intron | 60.0% | |
| !! | CCGCTGCCATGGTGCTGTTT+CGG | + | chr5.3:66739498-66739517 | None:intergenic | 60.0% |
| CAGTCAAGTGCCCCGCCTCA+AGG | + | chr5.3:66739288-66739307 | None:intergenic | 65.0% | |
| CGGAGTGATCGGCCTTGAGG+CGG | - | chr5.3:66739273-66739292 | MS.gene80816:intron | 65.0% | |
| GAGTGATCGGCCTTGAGGCG+GGG | - | chr5.3:66739275-66739294 | MS.gene80816:intron | 65.0% | |
| GGAGTGATCGGCCTTGAGGC+GGG | - | chr5.3:66739274-66739293 | MS.gene80816:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66738362 | 66741267 | 66738362 | ID=MS.gene80816 |
| chr5.3 | mRNA | 66738362 | 66741267 | 66738362 | ID=MS.gene80816.t1;Parent=MS.gene80816 |
| chr5.3 | exon | 66741172 | 66741267 | 66741172 | ID=MS.gene80816.t1.exon1;Parent=MS.gene80816.t1 |
| chr5.3 | CDS | 66741172 | 66741267 | 66741172 | ID=cds.MS.gene80816.t1;Parent=MS.gene80816.t1 |
| chr5.3 | exon | 66739229 | 66739272 | 66739229 | ID=MS.gene80816.t1.exon2;Parent=MS.gene80816.t1 |
| chr5.3 | CDS | 66739229 | 66739272 | 66739229 | ID=cds.MS.gene80816.t1;Parent=MS.gene80816.t1 |
| chr5.3 | exon | 66738845 | 66738953 | 66738845 | ID=MS.gene80816.t1.exon3;Parent=MS.gene80816.t1 |
| chr5.3 | CDS | 66738845 | 66738953 | 66738845 | ID=cds.MS.gene80816.t1;Parent=MS.gene80816.t1 |
| chr5.3 | exon | 66738708 | 66738763 | 66738708 | ID=MS.gene80816.t1.exon4;Parent=MS.gene80816.t1 |
| chr5.3 | CDS | 66738708 | 66738763 | 66738708 | ID=cds.MS.gene80816.t1;Parent=MS.gene80816.t1 |
| chr5.3 | exon | 66738362 | 66738446 | 66738362 | ID=MS.gene80816.t1.exon5;Parent=MS.gene80816.t1 |
| chr5.3 | CDS | 66738362 | 66738446 | 66738362 | ID=cds.MS.gene80816.t1;Parent=MS.gene80816.t1 |
| Gene Sequence |
| Protein sequence |
