Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81010.t1 | XP_013459405.1 | 98.3 | 462 | 8 | 0 | 1 | 462 | 1 | 462 | 9.00E-261 | 909.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81010.t1 | Q8HXH0 | 27.6 | 471 | 286 | 14 | 34 | 462 | 245 | 702 | 1.6e-40 | 168.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81010.t1 | A0A072UVL6 | 98.3 | 462 | 8 | 0 | 1 | 462 | 1 | 462 | 6.5e-261 | 909.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene81010 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene81010 | 0.823486 | 1.35E-53 | -1.69E-46 |
| MS.gene050170 | MS.gene81010 | 0.830925 | 2.23E-55 | -1.69E-46 |
| MS.gene050338 | MS.gene81010 | -0.828214 | 1.02E-54 | -1.69E-46 |
| MS.gene050904 | MS.gene81010 | 0.867084 | 1.78E-65 | -1.69E-46 |
| MS.gene051317 | MS.gene81010 | 0.813337 | 2.69E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene81010 | 0.810885 | 9.23E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene81010 | 0.810551 | 1.09E-50 | -1.69E-46 |
| MS.gene055158 | MS.gene81010 | -0.807872 | 4.09E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene81010 | 0.81743 | 3.31E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene81010 | 0.800264 | 1.56E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene81010 | 0.821861 | 3.22E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene81010 | 0.842287 | 2.83E-58 | -1.69E-46 |
| MS.gene056387 | MS.gene81010 | 0.825891 | 3.66E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene81010 | 0.802185 | 6.33E-49 | -1.69E-46 |
| MS.gene056618 | MS.gene81010 | -0.837755 | 4.31E-57 | -1.69E-46 |
| MS.gene056692 | MS.gene81010 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene81010 | 0.823803 | 1.14E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene81010 | 0.815973 | 7.02E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene81010 | 0.804789 | 1.83E-49 | -1.69E-46 |
| MS.gene05912 | MS.gene81010 | 0.827556 | 1.47E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene81010 | 0.820398 | 7.01E-53 | -1.69E-46 |
| MS.gene06042 | MS.gene81010 | -0.812245 | 4.67E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene81010 | 0.822379 | 2.45E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene81010 | 0.81701 | 4.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81010.t1 | MTR_3g037230 | 98.268 | 462 | 8 | 0 | 1 | 462 | 1 | 462 | 0.0 | 935 |
| MS.gene81010.t1 | MTR_3g037230 | 98.313 | 415 | 7 | 0 | 48 | 462 | 1 | 415 | 0.0 | 837 |
| MS.gene81010.t1 | MTR_7g035445 | 44.737 | 76 | 40 | 2 | 186 | 260 | 154 | 228 | 6.01e-16 | 80.1 |
| MS.gene81010.t1 | MTR_3g112420 | 31.429 | 175 | 109 | 3 | 288 | 462 | 95 | 258 | 3.16e-15 | 76.6 |
| MS.gene81010.t1 | MTR_1g093975 | 40.000 | 95 | 53 | 3 | 183 | 275 | 15 | 107 | 1.55e-13 | 68.2 |
| MS.gene81010.t1 | MTR_1g094005 | 40.000 | 95 | 53 | 3 | 183 | 275 | 15 | 107 | 1.55e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81010.t1 | AT1G18660 | 64.912 | 456 | 156 | 4 | 11 | 464 | 17 | 470 | 0.0 | 620 |
| MS.gene81010.t1 | AT1G18660 | 64.912 | 456 | 156 | 4 | 11 | 464 | 17 | 470 | 0.0 | 620 |
| MS.gene81010.t1 | AT1G18660 | 64.912 | 456 | 156 | 4 | 11 | 464 | 17 | 470 | 0.0 | 620 |
| MS.gene81010.t1 | AT1G18660 | 64.901 | 453 | 155 | 4 | 11 | 461 | 17 | 467 | 0.0 | 618 |
| MS.gene81010.t1 | AT1G75460 | 33.889 | 180 | 101 | 5 | 288 | 464 | 87 | 251 | 3.42e-16 | 79.3 |
| MS.gene81010.t1 | AT1G19740 | 34.659 | 176 | 103 | 4 | 289 | 464 | 88 | 251 | 2.60e-15 | 76.6 |
| MS.gene81010.t1 | AT3G27330 | 39.024 | 82 | 48 | 2 | 186 | 266 | 720 | 800 | 3.38e-13 | 72.8 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 23421 | gene | 67805 | 76698 | 67805 | ID=MS.gene81010 |
| 23421 | mRNA | 67805 | 76698 | 67805 | ID=MS.gene81010.t1;Parent=MS.gene81010 |
| 23421 | exon | 76648 | 76698 | 76648 | ID=MS.gene81010.t1.exon1;Parent=MS.gene81010.t1 |
| 23421 | CDS | 76648 | 76698 | 76648 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 74472 | 74570 | 74472 | ID=MS.gene81010.t1.exon2;Parent=MS.gene81010.t1 |
| 23421 | CDS | 74472 | 74570 | 74472 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 73330 | 73412 | 73330 | ID=MS.gene81010.t1.exon3;Parent=MS.gene81010.t1 |
| 23421 | CDS | 73330 | 73412 | 73330 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 73114 | 73198 | 73114 | ID=MS.gene81010.t1.exon4;Parent=MS.gene81010.t1 |
| 23421 | CDS | 73114 | 73198 | 73114 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 72932 | 73018 | 72932 | ID=MS.gene81010.t1.exon5;Parent=MS.gene81010.t1 |
| 23421 | CDS | 72932 | 73018 | 72932 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 72359 | 72420 | 72359 | ID=MS.gene81010.t1.exon6;Parent=MS.gene81010.t1 |
| 23421 | CDS | 72359 | 72420 | 72359 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 72012 | 72205 | 72012 | ID=MS.gene81010.t1.exon7;Parent=MS.gene81010.t1 |
| 23421 | CDS | 72012 | 72205 | 72012 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 71867 | 71927 | 71867 | ID=MS.gene81010.t1.exon8;Parent=MS.gene81010.t1 |
| 23421 | CDS | 71867 | 71927 | 71867 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 71115 | 71292 | 71115 | ID=MS.gene81010.t1.exon9;Parent=MS.gene81010.t1 |
| 23421 | CDS | 71115 | 71292 | 71115 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 70279 | 70317 | 70279 | ID=MS.gene81010.t1.exon10;Parent=MS.gene81010.t1 |
| 23421 | CDS | 70279 | 70317 | 70279 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 70109 | 70170 | 70109 | ID=MS.gene81010.t1.exon11;Parent=MS.gene81010.t1 |
| 23421 | CDS | 70109 | 70170 | 70109 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 69948 | 69984 | 69948 | ID=MS.gene81010.t1.exon12;Parent=MS.gene81010.t1 |
| 23421 | CDS | 69948 | 69984 | 69948 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 69302 | 69351 | 69302 | ID=MS.gene81010.t1.exon13;Parent=MS.gene81010.t1 |
| 23421 | CDS | 69302 | 69351 | 69302 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 69143 | 69212 | 69143 | ID=MS.gene81010.t1.exon14;Parent=MS.gene81010.t1 |
| 23421 | CDS | 69143 | 69212 | 69143 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 68477 | 68552 | 68477 | ID=MS.gene81010.t1.exon15;Parent=MS.gene81010.t1 |
| 23421 | CDS | 68477 | 68552 | 68477 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 68304 | 68383 | 68304 | ID=MS.gene81010.t1.exon16;Parent=MS.gene81010.t1 |
| 23421 | CDS | 68304 | 68383 | 68304 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 68135 | 68203 | 68135 | ID=MS.gene81010.t1.exon17;Parent=MS.gene81010.t1 |
| 23421 | CDS | 68135 | 68203 | 68135 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| 23421 | exon | 67805 | 67870 | 67805 | ID=MS.gene81010.t1.exon18;Parent=MS.gene81010.t1 |
| 23421 | CDS | 67805 | 67870 | 67805 | ID=cds.MS.gene81010.t1;Parent=MS.gene81010.t1 |
| Gene Sequence |
| Protein sequence |
