Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81295.t1 | XP_003617862.1 | 96.2 | 773 | 29 | 0 | 1 | 773 | 1 | 773 | 0.00E+00 | 1269.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81295.t1 | Q8VZS6 | 25.9 | 771 | 347 | 25 | 13 | 773 | 11 | 567 | 3.8e-28 | 128.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81295.t1 | G7KEK0 | 96.2 | 773 | 29 | 0 | 1 | 773 | 1 | 773 | 0.0e+00 | 1269.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene81295 | -0.816058 | 6.72E-52 | -1.69E-46 |
MS.gene049669 | MS.gene81295 | -0.804434 | 2.16E-49 | -1.69E-46 |
MS.gene050623 | MS.gene81295 | 0.80761 | 4.65E-50 | -1.69E-46 |
MS.gene050750 | MS.gene81295 | -0.807099 | 5.96E-50 | -1.69E-46 |
MS.gene050826 | MS.gene81295 | -0.812369 | 4.39E-51 | -1.69E-46 |
MS.gene050953 | MS.gene81295 | -0.805697 | 1.18E-49 | -1.69E-46 |
MS.gene051924 | MS.gene81295 | 0.82737 | 1.62E-54 | -1.69E-46 |
MS.gene051926 | MS.gene81295 | 0.810919 | 9.07E-51 | -1.69E-46 |
MS.gene052358 | MS.gene81295 | 0.807763 | 4.31E-50 | -1.69E-46 |
MS.gene052965 | MS.gene81295 | 0.805536 | 1.27E-49 | -1.69E-46 |
MS.gene05414 | MS.gene81295 | -0.825711 | 4.04E-54 | -1.69E-46 |
MS.gene05415 | MS.gene81295 | -0.84107 | 5.94E-58 | -1.69E-46 |
MS.gene054236 | MS.gene81295 | -0.814421 | 1.55E-51 | -1.69E-46 |
MS.gene054291 | MS.gene81295 | 0.843995 | 9.94E-59 | -1.69E-46 |
MS.gene054405 | MS.gene81295 | -0.801753 | 7.76E-49 | -1.69E-46 |
MS.gene054468 | MS.gene81295 | -0.801268 | 9.76E-49 | -1.69E-46 |
MS.gene055701 | MS.gene81295 | -0.818773 | 1.65E-52 | -1.69E-46 |
MS.gene055818 | MS.gene81295 | -0.804212 | 2.41E-49 | -1.69E-46 |
MS.gene056506 | MS.gene81295 | -0.802871 | 4.57E-49 | -1.69E-46 |
MS.gene057026 | MS.gene81295 | -0.841519 | 4.52E-58 | -1.69E-46 |
MS.gene058223 | MS.gene81295 | 0.815427 | 9.30E-52 | -1.69E-46 |
MS.gene060322 | MS.gene81295 | -0.829258 | 5.69E-55 | -1.69E-46 |
MS.gene060572 | MS.gene81295 | -0.820915 | 5.33E-53 | -1.69E-46 |
MS.gene061040 | MS.gene81295 | 0.825134 | 5.53E-54 | -1.69E-46 |
MS.gene061114 | MS.gene81295 | 0.800651 | 1.30E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81295.t1 | MTR_5g096290 | 97.930 | 773 | 16 | 0 | 1 | 773 | 1 | 773 | 0.0 | 1525 |
MS.gene81295.t1 | MTR_5g069290 | 35.379 | 896 | 418 | 28 | 9 | 773 | 3 | 868 | 1.13e-108 | 352 |
MS.gene81295.t1 | MTR_8g019650 | 59.155 | 71 | 27 | 2 | 6 | 76 | 9 | 77 | 1.81e-17 | 87.8 |
MS.gene81295.t1 | MTR_8g019650 | 31.356 | 236 | 122 | 14 | 565 | 773 | 784 | 1006 | 5.16e-11 | 67.0 |
MS.gene81295.t1 | MTR_8g088190 | 41.758 | 91 | 47 | 3 | 1 | 89 | 1 | 87 | 3.27e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81295.t1 | AT3G07660 | 36.345 | 487 | 215 | 16 | 371 | 773 | 366 | 841 | 3.75e-60 | 219 |
MS.gene81295.t1 | AT3G07660 | 40.650 | 123 | 73 | 0 | 9 | 131 | 3 | 125 | 8.56e-19 | 92.0 |
MS.gene81295.t1 | AT3G13222 | 44.366 | 142 | 65 | 3 | 5 | 145 | 3 | 131 | 8.12e-29 | 122 |
MS.gene81295.t1 | AT3G13222 | 28.502 | 414 | 192 | 17 | 371 | 773 | 247 | 567 | 6.70e-15 | 79.0 |
MS.gene81295.t1 | AT1G55820 | 46.043 | 139 | 61 | 5 | 9 | 147 | 6 | 130 | 3.07e-26 | 114 |
MS.gene81295.t1 | AT1G55820 | 29.771 | 524 | 281 | 20 | 279 | 773 | 110 | 575 | 7.35e-26 | 113 |
MS.gene81295.t1 | AT3G13990 | 28.070 | 285 | 166 | 10 | 1 | 271 | 2 | 261 | 3.15e-14 | 77.4 |
MS.gene81295.t1 | AT3G13990 | 28.070 | 285 | 166 | 10 | 1 | 271 | 2 | 261 | 3.20e-14 | 77.4 |
MS.gene81295.t1 | AT4G18150 | 36.029 | 136 | 70 | 6 | 7 | 130 | 2 | 132 | 1.02e-12 | 72.4 |
Find 238 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCAAAAGCTTCTCTATTT+AGG | 0.177667 | 5.2:+80791406 | MS.gene81295:CDS |
CCAGCCGCGGCTGCAGCTGC+TGG | 0.207112 | 5.2:+80798472 | MS.gene81295:CDS |
GTGGTGGTGGTGGCGGGTCT+AGG | 0.212056 | 5.2:+80791260 | MS.gene81295:CDS |
TGCATTGGAGACAGGTAAAT+TGG | 0.214964 | 5.2:-80798391 | None:intergenic |
CTCCGTGAGCAGCCTGTGTC+TGG | 0.219809 | 5.2:-80799020 | None:intergenic |
CACTGCAGTATCTTCATTTC+CGG | 0.236484 | 5.2:-80798632 | None:intergenic |
AATTTCATGTCTACCATGTT+AGG | 0.248936 | 5.2:+80797110 | MS.gene81295:CDS |
GCTGGGCCAAATCATGTTAA+AGG | 0.261520 | 5.2:+80794609 | MS.gene81295:CDS |
AAGTCTGGTCACGGTTCTTC+TGG | 0.281009 | 5.2:+80794285 | MS.gene81295:CDS |
GGCCGCGGTGGTGGTGGTGG+CGG | 0.286927 | 5.2:+80791253 | MS.gene81295:CDS |
CACCGCCAACACCAGGAATC+TGG | 0.293289 | 5.2:-80794551 | None:intergenic |
CGGGTTGCTTGTTGAATTCA+TGG | 0.297959 | 5.2:-80794688 | None:intergenic |
TTTGACTTTGGTATTGCATT+CGG | 0.304863 | 5.2:-80794708 | None:intergenic |
CAAGTGCCTGAGGCTTTAAA+AGG | 0.306095 | 5.2:+80795400 | MS.gene81295:CDS |
TTGTTTCCTTTAACATGATT+TGG | 0.306784 | 5.2:-80794615 | None:intergenic |
CTTCCTATTCGAAGGGAAAA+TGG | 0.306891 | 5.2:+80793660 | MS.gene81295:CDS |
CAGCAGTCTCAAGCTGTCGC+TGG | 0.314498 | 5.2:+80799099 | MS.gene81295:CDS |
GCATTCACTGAAGAAGATTC+AGG | 0.317221 | 5.2:-80795511 | None:intergenic |
GTTCAAAGTGCTCAAAACTA+TGG | 0.320477 | 5.2:+80797083 | MS.gene81295:CDS |
CCATCTATCTCCCAGATTCC+TGG | 0.331270 | 5.2:+80794540 | MS.gene81295:CDS |
CTGTAGAGGTGGAGTTGGGC+TGG | 0.331789 | 5.2:-80798281 | None:intergenic |
GGCTATTCCTCAAACTTTCC+TGG | 0.336120 | 5.2:+80793162 | MS.gene81295:CDS |
TCGCTCCAGCCTTGAATTGC+GGG | 0.342458 | 5.2:-80798510 | None:intergenic |
AAATTACAACCTTGAGGCTT+GGG | 0.350670 | 5.2:-80793757 | None:intergenic |
CCAGCAGCTGCAGCCGCGGC+TGG | 0.355020 | 5.2:-80798472 | None:intergenic |
TTAAAAGGTGGTCTGACATT+TGG | 0.355222 | 5.2:+80795415 | MS.gene81295:CDS |
GGCTCATATTGGAATTCCTT+CGG | 0.356484 | 5.2:+80798546 | MS.gene81295:CDS |
TGGAGCGAACACAGGAAATA+TGG | 0.359123 | 5.2:+80798525 | MS.gene81295:CDS |
TGCTAGATGGTGGTGGTGGT+GGG | 0.362600 | 5.2:+80793631 | MS.gene81295:intron |
ATCAAGATGATCTCCGTGTT+CGG | 0.367141 | 5.2:-80796925 | None:intergenic |
CCTAGTCCGACTGTGAATAC+TGG | 0.367560 | 5.2:+80798601 | MS.gene81295:CDS |
TTGACTTTGGTATTGCATTC+GGG | 0.371451 | 5.2:-80794707 | None:intergenic |
GCACTTTGAACAGTCAGAAT+TGG | 0.377482 | 5.2:-80797071 | None:intergenic |
ATGCTGAAACTGTTAATTCA+AGG | 0.379384 | 5.2:+80795530 | MS.gene81295:CDS |
AGCGGCGGCCGCGGTGGTGG+TGG | 0.379951 | 5.2:+80791247 | MS.gene81295:CDS |
GCATTGGAGACAGGTAAATT+GGG | 0.381244 | 5.2:-80798390 | None:intergenic |
ACAGGAAATATGGCTCATAT+TGG | 0.381667 | 5.2:+80798535 | MS.gene81295:CDS |
TTGCTAGATGGTGGTGGTGG+TGG | 0.383397 | 5.2:+80793630 | MS.gene81295:intron |
GCCGCGGTGGTGGTGGTGGC+GGG | 0.386945 | 5.2:+80791254 | MS.gene81295:CDS |
GTTGTCCAGTTGTGTAGATC+TGG | 0.392117 | 5.2:-80798672 | None:intergenic |
TCAGGCACTTGGAAATGGTT+TGG | 0.399267 | 5.2:-80795388 | None:intergenic |
GAAACGGGCTGTGGAGAAAC+AGG | 0.403673 | 5.2:-80798313 | None:intergenic |
AAGCCTCAGGCACTTGGAAA+TGG | 0.404582 | 5.2:-80795393 | None:intergenic |
GTTCCCTCTCCCGCAATTCA+AGG | 0.408553 | 5.2:+80798501 | MS.gene81295:CDS |
TTCCTCTTCAGATCCTGTGC+TGG | 0.408962 | 5.2:+80794515 | MS.gene81295:CDS |
GTTGCAAACCGGACATATCT+TGG | 0.409196 | 5.2:-80798948 | None:intergenic |
TCTGAAGGCATATCTATAAC+TGG | 0.409197 | 5.2:+80796990 | MS.gene81295:CDS |
TCAAGATGATCTCCGTGTTC+GGG | 0.409737 | 5.2:-80796924 | None:intergenic |
CTTTCAACTTCATTTGACTT+TGG | 0.410792 | 5.2:-80794720 | None:intergenic |
CAAATGAAGTTGAAAGTAAC+CGG | 0.414132 | 5.2:+80794727 | MS.gene81295:CDS |
AGGTGGTTGGCTAACGCAAC+TGG | 0.415387 | 5.2:-80794793 | None:intergenic |
GGCGGCCGCGGTGGTGGTGG+TGG | 0.416006 | 5.2:+80791250 | MS.gene81295:CDS |
GCTCATATTGGAATTCCTTC+GGG | 0.416308 | 5.2:+80798547 | MS.gene81295:CDS |
GATCTACACAACTGGACAAC+TGG | 0.418532 | 5.2:+80798675 | MS.gene81295:CDS |
GTTCGGGCAATGGCACGCTT+TGG | 0.419058 | 5.2:-80796908 | None:intergenic |
TGTAGAGGTGGAGTTGGGCT+GGG | 0.425157 | 5.2:-80798280 | None:intergenic |
ATGAGCGGCGGCCGCGGTGG+TGG | 0.430580 | 5.2:+80791244 | MS.gene81295:CDS |
CATTGTAGGGATTGAGCAGC+AGG | 0.430709 | 5.2:+80793076 | MS.gene81295:intron |
GCTGCTCACGGAGCATTTCC+CGG | 0.434441 | 5.2:+80799030 | MS.gene81295:CDS |
AATCAATCCAATGGGAAGTC+TGG | 0.436871 | 5.2:+80794270 | MS.gene81295:CDS |
GAAAACCAGATCTACACAAC+TGG | 0.437940 | 5.2:+80798667 | MS.gene81295:CDS |
GGCGGGCCTACAGTTTCAAC+AGG | 0.437990 | 5.2:-80799123 | None:intergenic |
CAGCCGCGGCTGCAGCTGCT+GGG | 0.442511 | 5.2:+80798473 | MS.gene81295:CDS |
CAACACTACCTATGAGAGAT+TGG | 0.442663 | 5.2:-80794308 | None:intergenic |
CAGCTTGAGACTGCTGCAAA+AGG | 0.443273 | 5.2:-80799092 | None:intergenic |
GAAATTACAACCTTGAGGCT+TGG | 0.445152 | 5.2:-80793758 | None:intergenic |
AGTTGAGACCTCTGTGACAT+TGG | 0.448927 | 5.2:-80795317 | None:intergenic |
GACTGCTGCAAAAGGGTAGA+AGG | 0.449419 | 5.2:-80799084 | None:intergenic |
AGCTCTGTAGAGGTGGAGTT+GGG | 0.449566 | 5.2:-80798285 | None:intergenic |
GTTAACAATACCTCCTGCTT+TGG | 0.450263 | 5.2:-80797035 | None:intergenic |
TACCGCCTTCTCAGATCAAT+TGG | 0.451052 | 5.2:+80799166 | MS.gene81295:CDS |
AAAATTGATGCATTGGAGAC+AGG | 0.452279 | 5.2:-80798399 | None:intergenic |
CTGCCCTGGTTGATAGATAC+CGG | 0.454716 | 5.2:-80799049 | None:intergenic |
TGGTGGTGGTGGCGGGTCTA+GGG | 0.455666 | 5.2:+80791261 | MS.gene81295:CDS |
TCCGTGAGCAGCCTGTGTCT+GGG | 0.456000 | 5.2:-80799019 | None:intergenic |
TAGAAGCTGAACTGCTTTGT+GGG | 0.456515 | 5.2:-80794338 | None:intergenic |
GGATTGATTTGCAGCACTAC+GGG | 0.459068 | 5.2:-80794256 | None:intergenic |
CCAGTATTCACAGTCGGACT+AGG | 0.461215 | 5.2:-80798601 | None:intergenic |
TTAGAAGCTGAACTGCTTTG+TGG | 0.462040 | 5.2:-80794339 | None:intergenic |
GTTGCAAGGGCTCAGATAAC+CGG | 0.463340 | 5.2:-80794746 | None:intergenic |
ATTGCAGACTGCAAGTTCTC+AGG | 0.466939 | 5.2:+80798249 | MS.gene81295:intron |
CCAGCTAACTTCTTCCCATA+TGG | 0.466958 | 5.2:+80798355 | MS.gene81295:CDS |
TAGATCAAAACAACGTGGAC+AGG | 0.467933 | 5.2:+80793113 | MS.gene81295:CDS |
TTCCGTACATTGTTGGGGAT+CGG | 0.469554 | 5.2:-80791286 | None:intergenic |
CTATATAACCTTGCCCCTCA+AGG | 0.469727 | 5.2:+80798979 | MS.gene81295:CDS |
GGGAGTGACCGGATATCTGC+TGG | 0.471503 | 5.2:+80794591 | MS.gene81295:CDS |
ATTTCATGTCTACCATGTTA+GGG | 0.475944 | 5.2:+80797111 | MS.gene81295:CDS |
AGCAGTCTCAAGCTGTCGCT+GGG | 0.477878 | 5.2:+80799100 | MS.gene81295:CDS |
CCATATGGGAAGAAGTTAGC+TGG | 0.481888 | 5.2:-80798355 | None:intergenic |
TTCCCTCAACAGCCATCAGC+TGG | 0.482033 | 5.2:+80798436 | MS.gene81295:CDS |
CCAGCCTTGAATTGCGGGAG+AGG | 0.483908 | 5.2:-80798505 | None:intergenic |
CCAGGAATCTGGGAGATAGA+TGG | 0.484625 | 5.2:-80794540 | None:intergenic |
TTCGCTCCAGCCTTGAATTG+CGG | 0.486110 | 5.2:-80798511 | None:intergenic |
TGGTGGCCTAAAATAAGAAA+CGG | 0.489748 | 5.2:-80798329 | None:intergenic |
TGGATTGATTTGCAGCACTA+CGG | 0.490684 | 5.2:-80794257 | None:intergenic |
GTGAATACTGGAAGCTCTGC+CGG | 0.492892 | 5.2:+80798613 | MS.gene81295:CDS |
TCCCAGATTCCTGGTGTTGG+CGG | 0.494415 | 5.2:+80794549 | MS.gene81295:CDS |
GATTTGGCCCAGCAGATATC+CGG | 0.495485 | 5.2:-80794599 | None:intergenic |
GAGCTCTGTAGAGGTGGAGT+TGG | 0.496736 | 5.2:-80798286 | None:intergenic |
GTCAGAATTGGATGGCCCTC+GGG | 0.498580 | 5.2:-80797059 | None:intergenic |
GAAAGAATGAGCGGCGGCCG+CGG | 0.501038 | 5.2:+80791238 | None:intergenic |
CATGTTTGATTCTTTAAGAA+CGG | 0.501860 | 5.2:-80791368 | None:intergenic |
GGACCCGGACTTATCATTCT+CGG | 0.502645 | 5.2:-80794667 | None:intergenic |
TTGGTCAGTTCTTGTAATTG+AGG | 0.502651 | 5.2:-80794439 | None:intergenic |
AGTTCTTGTAATTGAGGCAA+AGG | 0.505006 | 5.2:-80794433 | None:intergenic |
ATCTCCCAGATTCCTGGTGT+TGG | 0.505270 | 5.2:+80794546 | MS.gene81295:CDS |
CTCTTGCTAGATGGTGGTGG+TGG | 0.506078 | 5.2:+80793627 | MS.gene81295:intron |
GGTGCTGTCAGTAGGGAAGT+AGG | 0.506343 | 5.2:+80794570 | MS.gene81295:CDS |
AAAACAACGTGGACAGGGGA+GGG | 0.506744 | 5.2:+80793119 | MS.gene81295:CDS |
GAGATAGATGGTGCCAGCAC+AGG | 0.507181 | 5.2:-80794528 | None:intergenic |
TCAACATCAAATTTCTGTAC+CGG | 0.510047 | 5.2:+80794485 | MS.gene81295:CDS |
AAGGTGAGATGTTGCCCTTG+AGG | 0.511656 | 5.2:-80798994 | None:intergenic |
TCTTCTGGCCAATCTCTCAT+AGG | 0.512504 | 5.2:+80794300 | MS.gene81295:CDS |
AGGTGAGATGTTGCCCTTGA+GGG | 0.513539 | 5.2:-80798993 | None:intergenic |
GCTGATAAGATCCTGGAGGC+GGG | 0.514023 | 5.2:-80799140 | None:intergenic |
TAGAGAATTAAGTTGCAAAC+CGG | 0.515652 | 5.2:-80798959 | None:intergenic |
CCTCTCCCGCAATTCAAGGC+TGG | 0.516531 | 5.2:+80798505 | MS.gene81295:CDS |
CCGTGAGCAGCCTGTGTCTG+GGG | 0.517112 | 5.2:-80799018 | None:intergenic |
GATCCCAGCAGCTGCAGCCG+CGG | 0.517466 | 5.2:-80798476 | None:intergenic |
AAAGATTGAGCAGCCAAAGC+AGG | 0.517956 | 5.2:+80797022 | MS.gene81295:CDS |
AAACAACGTGGACAGGGGAG+GGG | 0.518758 | 5.2:+80793120 | MS.gene81295:CDS |
TTCCGATCCCCAACAATGTA+CGG | 0.520407 | 5.2:+80791284 | MS.gene81295:CDS |
ATTGAGGCAAAGGTTTGAGT+AGG | 0.520561 | 5.2:-80794423 | None:intergenic |
GGACTAGGAGCATATCCAAC+AGG | 0.520833 | 5.2:-80798586 | None:intergenic |
GCATCCGAGAATGATAAGTC+CGG | 0.521679 | 5.2:+80794663 | MS.gene81295:CDS |
GGTGGCCTAAAATAAGAAAC+GGG | 0.522599 | 5.2:-80798328 | None:intergenic |
ACTCAGCAAGTTCAATTTGA+GGG | 0.523341 | 5.2:+80797134 | MS.gene81295:CDS |
ACCGCCAACACCAGGAATCT+GGG | 0.523803 | 5.2:-80794550 | None:intergenic |
ATTGAGCAGCAGGGTTTCTG+AGG | 0.524138 | 5.2:+80793086 | MS.gene81295:CDS |
GGAAACAAACTTGAAGAAGC+TGG | 0.524687 | 5.2:+80794630 | MS.gene81295:CDS |
GGGAAGAAGTTAGCTGGGTA+TGG | 0.526076 | 5.2:-80798349 | None:intergenic |
TGCTGATAAGATCCTGGAGG+CGG | 0.526275 | 5.2:-80799141 | None:intergenic |
TGATCTCCGTGTTCGGGCAA+TGG | 0.526759 | 5.2:-80796918 | None:intergenic |
AAACTTTACCTTGAGGTGGT+TGG | 0.528234 | 5.2:-80794806 | None:intergenic |
GTGTTGGCGGTGCTGTCAGT+AGG | 0.529908 | 5.2:+80794562 | MS.gene81295:CDS |
AGAATGAGCGGCGGCCGCGG+TGG | 0.530461 | 5.2:+80791241 | None:intergenic |
GATCTCTCTGATGTCGTGGA+TGG | 0.534492 | 5.2:-80791311 | None:intergenic |
CCCCAGACACAGGCTGCTCA+CGG | 0.537435 | 5.2:+80799018 | MS.gene81295:CDS |
GAAACTGTAGGCCCGCCTCC+AGG | 0.540189 | 5.2:+80799129 | MS.gene81295:CDS |
CTAAAATAAGAAACGGGCTG+TGG | 0.541113 | 5.2:-80798322 | None:intergenic |
GAATTCCAATTGATCTGAGA+AGG | 0.541172 | 5.2:-80799171 | None:intergenic |
AGTCAGAATTGGATGGCCCT+CGG | 0.541571 | 5.2:-80797060 | None:intergenic |
AAAGGTTTGAGTAGGAGAAG+TGG | 0.542499 | 5.2:-80794415 | None:intergenic |
GACTCAGCAAGTTCAATTTG+AGG | 0.543960 | 5.2:+80797133 | MS.gene81295:CDS |
GTGCTGCAAATCAATCCAAT+GGG | 0.544641 | 5.2:+80794262 | MS.gene81295:CDS |
AAATGTACCAGGAAAGTTTG+AGG | 0.546172 | 5.2:-80793169 | None:intergenic |
TCATATATCACTCCACCTGT+TGG | 0.546789 | 5.2:+80798571 | MS.gene81295:CDS |
TTGCCAGCTGATGGCTGTTG+AGG | 0.547973 | 5.2:-80798439 | None:intergenic |
GATGTTGCCCTTGAGGGGCA+AGG | 0.549942 | 5.2:-80798987 | None:intergenic |
GAGTTCTCTCTGCAATGTGA+TGG | 0.550044 | 5.2:-80793686 | None:intergenic |
CAAAACAACGTGGACAGGGG+AGG | 0.551743 | 5.2:+80793118 | MS.gene81295:CDS |
GCTGGGCCTGTTGAAACTGT+AGG | 0.551856 | 5.2:+80799117 | MS.gene81295:CDS |
CGGTGATCTCTCTGATGTCG+TGG | 0.555061 | 5.2:-80791315 | None:intergenic |
AGCTTGAGACTGCTGCAAAA+GGG | 0.555438 | 5.2:-80799091 | None:intergenic |
GCTTGTTGAATTCATGGACC+CGG | 0.556640 | 5.2:-80794682 | None:intergenic |
GAGGAACTTACAACAAAGGA+AGG | 0.557950 | 5.2:-80797191 | None:intergenic |
AGTGCTGCAAATCAATCCAA+TGG | 0.560942 | 5.2:+80794261 | MS.gene81295:CDS |
GTAGGGAAGTAGGGAGTGAC+CGG | 0.561882 | 5.2:+80794580 | MS.gene81295:CDS |
CAACATCAAATTTCTGTACC+GGG | 0.562172 | 5.2:+80794486 | MS.gene81295:CDS |
CTGTAAATCTGGCTGAGTAG+AGG | 0.562674 | 5.2:-80793715 | None:intergenic |
AAACCGGACATATCTTGGCC+TGG | 0.562751 | 5.2:-80798943 | None:intergenic |
GGAGGAACCTTCCTATTCGA+AGG | 0.562842 | 5.2:+80793652 | MS.gene81295:CDS |
GTGCTGTCAGTAGGGAAGTA+GGG | 0.563373 | 5.2:+80794571 | MS.gene81295:CDS |
TTCAAGGCTGGAGCGAACAC+AGG | 0.563651 | 5.2:+80798517 | MS.gene81295:CDS |
GGTAGCTGCTGATAAGATCC+TGG | 0.567965 | 5.2:-80799147 | None:intergenic |
CTCAACTCAGTTGACTGCAC+AGG | 0.568411 | 5.2:-80795349 | None:intergenic |
GCACCAGGCCAAGATATGTC+CGG | 0.568756 | 5.2:+80798940 | MS.gene81295:CDS |
CGTTCTTAAAGAATCAAACA+TGG | 0.570146 | 5.2:+80791369 | MS.gene81295:CDS |
ACTGAAGAAGATTCAGGAGT+GGG | 0.570709 | 5.2:-80795505 | None:intergenic |
GGTATAGAGCTCTGTAGAGG+TGG | 0.570730 | 5.2:-80798292 | None:intergenic |
CGTGAGCAGCCTGTGTCTGG+GGG | 0.572469 | 5.2:-80799017 | None:intergenic |
CAGCCTTGAATTGCGGGAGA+GGG | 0.573024 | 5.2:-80798504 | None:intergenic |
TGCCAGCTGATGGCTGTTGA+GGG | 0.575376 | 5.2:-80798438 | None:intergenic |
GGACAGGGGAGGGGAGCAAG+AGG | 0.576708 | 5.2:+80793129 | MS.gene81295:CDS |
TATATAACCTTGCCCCTCAA+GGG | 0.576839 | 5.2:+80798980 | MS.gene81295:CDS |
CTGACAGCACCGCCAACACC+AGG | 0.577823 | 5.2:-80794558 | None:intergenic |
ATGCAGCACCCCAAGCCTCA+AGG | 0.578939 | 5.2:+80793748 | MS.gene81295:CDS |
AGCGTGCCATTGCCCGAACA+CGG | 0.582012 | 5.2:+80796912 | MS.gene81295:CDS |
CATCCGAGAATGATAAGTCC+GGG | 0.582263 | 5.2:+80794664 | MS.gene81295:CDS |
AGATCAAAACAACGTGGACA+GGG | 0.589207 | 5.2:+80793114 | MS.gene81295:CDS |
GGAGGTATTGTTAACTCCCG+AGG | 0.592527 | 5.2:+80797043 | MS.gene81295:CDS |
GGTGAAGTTACTGTCTGCCC+TGG | 0.598871 | 5.2:-80799063 | None:intergenic |
AAAGAGACACTAGCTTCTGA+AGG | 0.599821 | 5.2:+80796975 | MS.gene81295:CDS |
AAGAAGTTAGCTGGGTATGG+TGG | 0.600041 | 5.2:-80798346 | None:intergenic |
TTTCCCGGTATCTATCAACC+AGG | 0.601306 | 5.2:+80799045 | MS.gene81295:CDS |
AACGGAGAAGATTTCGTCGT+CGG | 0.601528 | 5.2:-80791350 | None:intergenic |
AAACCATTTCCAAGTGCCTG+AGG | 0.602183 | 5.2:+80795390 | MS.gene81295:CDS |
AATTACAACCTTGAGGCTTG+GGG | 0.602227 | 5.2:-80793756 | None:intergenic |
TGCCCTGGTTGATAGATACC+GGG | 0.602438 | 5.2:-80799048 | None:intergenic |
AGATACATGTTGCCAGCTGA+TGG | 0.604442 | 5.2:-80798448 | None:intergenic |
TGCGTTAGCCAACCACCTCA+AGG | 0.605206 | 5.2:+80794798 | MS.gene81295:CDS |
TCCAATGGGAAGTCTGGTCA+CGG | 0.605345 | 5.2:+80794276 | MS.gene81295:CDS |
CATATGGGAAGAAGTTAGCT+GGG | 0.606074 | 5.2:-80798354 | None:intergenic |
TTTGAACAGTCAGAATTGGA+TGG | 0.606885 | 5.2:-80797067 | None:intergenic |
CATCTCTTGCTAGATGGTGG+TGG | 0.607034 | 5.2:+80793624 | MS.gene81295:intron |
GATTGAGCAGCCAAAGCAGG+AGG | 0.610604 | 5.2:+80797025 | MS.gene81295:CDS |
ACCGTGACCAGACTTCCCAT+TGG | 0.611137 | 5.2:-80794277 | None:intergenic |
CTGTGCAGTCAACTGAGTTG+AGG | 0.612178 | 5.2:+80795350 | MS.gene81295:CDS |
GAAGACGATGAGAGTTGCAA+GGG | 0.616553 | 5.2:-80794759 | None:intergenic |
TGAAGACGATGAGAGTTGCA+AGG | 0.618276 | 5.2:-80794760 | None:intergenic |
GGTGAGATGTTGCCCTTGAG+GGG | 0.619566 | 5.2:-80798992 | None:intergenic |
CATTGGAGACAGGTAAATTG+GGG | 0.621229 | 5.2:-80798389 | None:intergenic |
GTGCCTGAGGCTTTAAAAGG+TGG | 0.624955 | 5.2:+80795403 | MS.gene81295:CDS |
GATGGAGGAACTTACAACAA+AGG | 0.635043 | 5.2:-80797195 | None:intergenic |
TGTTGGCGGTGCTGTCAGTA+GGG | 0.639667 | 5.2:+80794563 | MS.gene81295:CDS |
GGAGTGACCGGATATCTGCT+GGG | 0.642640 | 5.2:+80794592 | MS.gene81295:CDS |
CACTGAAGAAGATTCAGGAG+TGG | 0.642648 | 5.2:-80795506 | None:intergenic |
ACAGGTATAGAGCTCTGTAG+AGG | 0.643476 | 5.2:-80798295 | None:intergenic |
GAGCTTCCAGTATTCACAGT+CGG | 0.644739 | 5.2:-80798607 | None:intergenic |
GCTGCAAGAACAACAGCTTG+AGG | 0.648149 | 5.2:-80794390 | None:intergenic |
CACGACATCAGAGAGATCAC+CGG | 0.648780 | 5.2:+80791316 | MS.gene81295:CDS |
ACAACAAAGGAAGGGAAGTG+TGG | 0.650206 | 5.2:-80797182 | None:intergenic |
CTAGGAGCATATCCAACAGG+TGG | 0.652618 | 5.2:-80798583 | None:intergenic |
GAGGAACCTTCCTATTCGAA+GGG | 0.652976 | 5.2:+80793653 | MS.gene81295:CDS |
AACTTGCTGAGTCCCTAACA+TGG | 0.655137 | 5.2:-80797123 | None:intergenic |
TGCCAGCACAGGATCTGAAG+AGG | 0.656250 | 5.2:-80794517 | None:intergenic |
GCTGTGTGGATACATGCACC+AGG | 0.661823 | 5.2:+80798925 | MS.gene81295:CDS |
TCTGAAGAGGAACAAACACC+CGG | 0.663195 | 5.2:-80794504 | None:intergenic |
ATTGTAGGGATTGAGCAGCA+GGG | 0.668215 | 5.2:+80793077 | MS.gene81295:intron |
TTCCAATTGATCTGAGAAGG+CGG | 0.672381 | 5.2:-80799168 | None:intergenic |
ACCCGCCACCACCACCACCG+CGG | 0.677659 | 5.2:-80791255 | None:intergenic |
TTGGAGACAGGTAAATTGGG+GGG | 0.679905 | 5.2:-80798387 | None:intergenic |
TCTCTCTCTGAAAGAATGAG+CGG | 0.679913 | 5.2:+80791229 | None:intergenic |
GAGGTATTGTTAACTCCCGA+GGG | 0.680947 | 5.2:+80797044 | MS.gene81295:CDS |
GATTGATTTGCAGCACTACG+GGG | 0.681379 | 5.2:-80794255 | None:intergenic |
TCAATTACAAGAACTGACCA+AGG | 0.681707 | 5.2:+80794441 | MS.gene81295:CDS |
GATCAAAACAACGTGGACAG+GGG | 0.696924 | 5.2:+80793115 | MS.gene81295:CDS |
AGGAACTTACAACAAAGGAA+GGG | 0.699468 | 5.2:-80797190 | None:intergenic |
CTCTCTGAAAGAATGAGCGG+CGG | 0.701991 | 5.2:+80791232 | None:intergenic |
CAACATGTATCTACCAGCCG+CGG | 0.706772 | 5.2:+80798459 | MS.gene81295:CDS |
TTCCCGGTATCTATCAACCA+GGG | 0.707077 | 5.2:+80799046 | MS.gene81295:CDS |
AGAGTGAAGGCTCTGCTGTG+TGG | 0.711840 | 5.2:+80798911 | MS.gene81295:intron |
AGCTGCTGATAAGATCCTGG+AGG | 0.720533 | 5.2:-80799144 | None:intergenic |
ATTGGAGACAGGTAAATTGG+GGG | 0.735261 | 5.2:-80798388 | None:intergenic |
TAAAACAGCCAATGTCACAG+AGG | 0.735538 | 5.2:+80795309 | MS.gene81295:CDS |
GCTGTTGAGGGAAACCATTG+TGG | 0.747524 | 5.2:-80798426 | None:intergenic |
GGAGTGATATATGATCCCGA+AGG | 0.756582 | 5.2:-80798562 | None:intergenic |
GAGTCTAGATCAAAACAACG+TGG | 0.798909 | 5.2:+80793108 | MS.gene81295:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 80791244 | 80799203 | 80791244 | ID=MS.gene81295 |
chr5.2 | mRNA | 80791244 | 80799203 | 80791244 | ID=MS.gene81295.t1;Parent=MS.gene81295 |
chr5.2 | exon | 80791244 | 80791427 | 80791244 | ID=MS.gene81295.t1.exon1;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80791244 | 80791427 | 80791244 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80792450 | 80792493 | 80792450 | ID=MS.gene81295.t1.exon2;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80792450 | 80792493 | 80792450 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80793084 | 80793183 | 80793084 | ID=MS.gene81295.t1.exon3;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80793084 | 80793183 | 80793084 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80793637 | 80793769 | 80793637 | ID=MS.gene81295.t1.exon4;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80793637 | 80793769 | 80793637 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80794239 | 80794819 | 80794239 | ID=MS.gene81295.t1.exon5;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80794239 | 80794819 | 80794239 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80795302 | 80795551 | 80795302 | ID=MS.gene81295.t1.exon6;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80795302 | 80795551 | 80795302 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80796905 | 80797202 | 80796905 | ID=MS.gene81295.t1.exon7;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80796905 | 80797202 | 80796905 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80798256 | 80798696 | 80798256 | ID=MS.gene81295.t1.exon8;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80798256 | 80798696 | 80798256 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
chr5.2 | exon | 80798913 | 80799203 | 80798913 | ID=MS.gene81295.t1.exon9;Parent=MS.gene81295.t1 |
chr5.2 | CDS | 80798913 | 80799203 | 80798913 | ID=cds.MS.gene81295.t1;Parent=MS.gene81295.t1 |
Gene Sequence |
Protein sequence |