Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81577.t1 | XP_024639458.1 | 85.1 | 450 | 66 | 1 | 1 | 450 | 1 | 449 | 1.10E-220 | 775.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81577.t1 | Q9SD53 | 29.3 | 440 | 274 | 15 | 20 | 444 | 34 | 451 | 8.2e-39 | 162.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81577.t1 | A0A396HXR1 | 85.1 | 450 | 66 | 1 | 1 | 450 | 1 | 449 | 8.0e-221 | 775.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051138 | MS.gene81577 | 0.804606 | 1.99E-49 | -1.69E-46 |
MS.gene051439 | MS.gene81577 | 0.812531 | 4.05E-51 | -1.69E-46 |
MS.gene051973 | MS.gene81577 | 0.816362 | 5.75E-52 | -1.69E-46 |
MS.gene052606 | MS.gene81577 | 0.806843 | 6.76E-50 | -1.69E-46 |
MS.gene05470 | MS.gene81577 | -0.82452 | 7.72E-54 | -1.69E-46 |
MS.gene05589 | MS.gene81577 | -0.802165 | 6.39E-49 | -1.69E-46 |
MS.gene056590 | MS.gene81577 | 0.806979 | 6.32E-50 | -1.69E-46 |
MS.gene056591 | MS.gene81577 | 0.805494 | 1.30E-49 | -1.69E-46 |
MS.gene056748 | MS.gene81577 | 0.840082 | 1.08E-57 | -1.69E-46 |
MS.gene056856 | MS.gene81577 | 0.806571 | 7.71E-50 | -1.69E-46 |
MS.gene056988 | MS.gene81577 | 0.823242 | 1.54E-53 | -1.69E-46 |
MS.gene058334 | MS.gene81577 | 0.800996 | 1.11E-48 | -1.69E-46 |
MS.gene058452 | MS.gene81577 | 0.819826 | 9.47E-53 | -1.69E-46 |
MS.gene058544 | MS.gene81577 | -0.802665 | 5.04E-49 | -1.69E-46 |
MS.gene058603 | MS.gene81577 | 0.808788 | 2.61E-50 | -1.69E-46 |
MS.gene05914 | MS.gene81577 | -0.80446 | 2.14E-49 | -1.69E-46 |
MS.gene059953 | MS.gene81577 | 0.807732 | 4.38E-50 | -1.69E-46 |
MS.gene059955 | MS.gene81577 | 0.815636 | 8.35E-52 | -1.69E-46 |
MS.gene060087 | MS.gene81577 | 0.815597 | 8.52E-52 | -1.69E-46 |
MS.gene061044 | MS.gene81577 | 0.83463 | 2.68E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81577.t1 | MTR_5g086340 | 64.444 | 450 | 144 | 6 | 1 | 450 | 1 | 434 | 0.0 | 588 |
MS.gene81577.t1 | MTR_8g042830 | 44.658 | 468 | 173 | 11 | 4 | 450 | 13 | 415 | 3.46e-117 | 350 |
MS.gene81577.t1 | MTR_5g087580 | 63.551 | 214 | 78 | 0 | 235 | 448 | 1 | 214 | 2.52e-95 | 286 |
MS.gene81577.t1 | MTR_5g086230 | 67.188 | 192 | 62 | 1 | 5 | 196 | 1 | 191 | 3.25e-90 | 273 |
MS.gene81577.t1 | MTR_5g086300 | 49.057 | 318 | 59 | 5 | 1 | 318 | 1 | 215 | 1.52e-88 | 269 |
MS.gene81577.t1 | MTR_5g086260 | 72.376 | 181 | 49 | 1 | 271 | 450 | 130 | 310 | 7.23e-88 | 271 |
MS.gene81577.t1 | MTR_5g016570 | 33.766 | 462 | 273 | 13 | 6 | 447 | 77 | 525 | 4.59e-73 | 239 |
MS.gene81577.t1 | MTR_5g087570 | 72.174 | 115 | 30 | 2 | 5 | 119 | 1 | 113 | 1.04e-52 | 173 |
MS.gene81577.t1 | MTR_8g005265 | 30.201 | 447 | 247 | 16 | 30 | 438 | 25 | 444 | 1.04e-45 | 165 |
MS.gene81577.t1 | MTR_8g005325 | 28.795 | 448 | 268 | 13 | 18 | 441 | 43 | 463 | 2.98e-43 | 159 |
MS.gene81577.t1 | MTR_8g005235 | 27.438 | 441 | 269 | 14 | 25 | 441 | 20 | 433 | 2.45e-42 | 155 |
MS.gene81577.t1 | MTR_2g041180 | 29.638 | 469 | 247 | 17 | 7 | 445 | 30 | 445 | 1.29e-40 | 152 |
MS.gene81577.t1 | MTR_0024s0080 | 27.924 | 419 | 258 | 14 | 34 | 448 | 27 | 405 | 5.90e-40 | 148 |
MS.gene81577.t1 | MTR_2g036320 | 29.095 | 464 | 255 | 19 | 7 | 445 | 47 | 461 | 1.08e-39 | 149 |
MS.gene81577.t1 | MTR_6g011050 | 28.029 | 421 | 267 | 10 | 30 | 448 | 22 | 408 | 3.24e-39 | 146 |
MS.gene81577.t1 | MTR_6g011060 | 25.576 | 434 | 285 | 12 | 27 | 450 | 15 | 420 | 3.37e-39 | 146 |
MS.gene81577.t1 | MTR_6g010920 | 26.478 | 423 | 270 | 12 | 30 | 448 | 23 | 408 | 1.28e-38 | 144 |
MS.gene81577.t1 | MTR_0209s0060 | 26.923 | 442 | 259 | 14 | 25 | 439 | 22 | 426 | 2.80e-38 | 144 |
MS.gene81577.t1 | MTR_0209s0030 | 26.923 | 442 | 259 | 14 | 25 | 439 | 22 | 426 | 2.80e-38 | 144 |
MS.gene81577.t1 | MTR_7g060840 | 29.691 | 421 | 242 | 17 | 49 | 448 | 45 | 432 | 5.30e-38 | 143 |
MS.gene81577.t1 | MTR_6g010890 | 25.694 | 432 | 273 | 11 | 33 | 448 | 26 | 425 | 1.30e-36 | 139 |
MS.gene81577.t1 | MTR_8g037923 | 28.384 | 458 | 263 | 19 | 32 | 444 | 29 | 466 | 1.08e-35 | 138 |
MS.gene81577.t1 | MTR_6g009170 | 28.180 | 401 | 249 | 12 | 34 | 425 | 27 | 397 | 1.32e-35 | 137 |
MS.gene81577.t1 | MTR_7g060260 | 30.047 | 426 | 228 | 16 | 49 | 448 | 45 | 426 | 1.74e-35 | 136 |
MS.gene81577.t1 | MTR_6g009590 | 25.822 | 426 | 276 | 11 | 27 | 445 | 15 | 407 | 3.84e-35 | 135 |
MS.gene81577.t1 | MTR_6g009610 | 25.587 | 426 | 282 | 9 | 25 | 448 | 18 | 410 | 5.87e-35 | 135 |
MS.gene81577.t1 | MTR_6g010810 | 26.340 | 429 | 257 | 13 | 34 | 448 | 24 | 407 | 2.94e-34 | 132 |
MS.gene81577.t1 | MTR_7g060020 | 28.256 | 453 | 253 | 17 | 23 | 448 | 20 | 427 | 3.84e-34 | 133 |
MS.gene81577.t1 | MTR_8g005285 | 24.528 | 477 | 296 | 11 | 25 | 448 | 29 | 494 | 5.68e-34 | 133 |
MS.gene81577.t1 | MTR_8g005295 | 26.078 | 487 | 274 | 13 | 33 | 448 | 37 | 508 | 7.32e-34 | 133 |
MS.gene81577.t1 | MTR_7g060310 | 27.430 | 463 | 252 | 13 | 49 | 448 | 46 | 487 | 7.53e-34 | 133 |
MS.gene81577.t1 | MTR_8g042170 | 27.155 | 464 | 259 | 19 | 32 | 447 | 24 | 456 | 9.55e-34 | 132 |
MS.gene81577.t1 | MTR_8g037920 | 28.000 | 425 | 245 | 16 | 54 | 444 | 8 | 405 | 1.65e-33 | 130 |
MS.gene81577.t1 | MTR_3g107590 | 26.606 | 436 | 272 | 13 | 8 | 433 | 8 | 405 | 4.20e-33 | 130 |
MS.gene81577.t1 | MTR_8g006525 | 26.218 | 431 | 266 | 14 | 29 | 437 | 25 | 425 | 4.43e-33 | 130 |
MS.gene81577.t1 | MTR_6g010850 | 29.586 | 338 | 191 | 11 | 120 | 448 | 49 | 348 | 2.59e-32 | 127 |
MS.gene81577.t1 | MTR_8g005225 | 26.185 | 443 | 266 | 16 | 33 | 443 | 38 | 451 | 3.59e-32 | 128 |
MS.gene81577.t1 | MTR_7g059540 | 27.897 | 466 | 267 | 17 | 28 | 447 | 23 | 465 | 1.37e-31 | 126 |
MS.gene81577.t1 | MTR_7g060320 | 28.959 | 442 | 248 | 13 | 49 | 447 | 45 | 463 | 3.34e-31 | 125 |
MS.gene81577.t1 | MTR_7g059540 | 26.403 | 481 | 265 | 17 | 28 | 447 | 22 | 474 | 2.64e-30 | 122 |
MS.gene81577.t1 | MTR_7g060330 | 25.971 | 489 | 261 | 14 | 31 | 448 | 29 | 487 | 2.59e-28 | 117 |
MS.gene81577.t1 | MTR_7g446270 | 28.964 | 473 | 263 | 16 | 28 | 444 | 25 | 480 | 8.85e-27 | 112 |
MS.gene81577.t1 | MTR_2g035640 | 31.765 | 170 | 115 | 1 | 276 | 444 | 175 | 344 | 1.19e-26 | 110 |
MS.gene81577.t1 | MTR_6g009580 | 33.696 | 184 | 119 | 3 | 268 | 448 | 51 | 234 | 2.59e-26 | 107 |
MS.gene81577.t1 | MTR_8g042400 | 26.558 | 369 | 209 | 14 | 111 | 447 | 5 | 343 | 4.29e-26 | 108 |
MS.gene81577.t1 | MTR_7g059480 | 34.359 | 195 | 115 | 4 | 258 | 447 | 586 | 772 | 5.62e-26 | 111 |
MS.gene81577.t1 | MTR_7g059525 | 36.158 | 177 | 105 | 5 | 277 | 447 | 108 | 282 | 1.16e-25 | 106 |
MS.gene81577.t1 | MTR_7g060115 | 26.196 | 439 | 250 | 16 | 49 | 448 | 44 | 447 | 1.22e-25 | 109 |
MS.gene81577.t1 | MTR_7g011980 | 32.370 | 173 | 115 | 2 | 278 | 448 | 169 | 341 | 1.46e-25 | 107 |
MS.gene81577.t1 | MTR_7g060370 | 27.197 | 478 | 260 | 16 | 28 | 447 | 22 | 469 | 2.66e-25 | 108 |
MS.gene81577.t1 | MTR_7g060080 | 33.898 | 177 | 109 | 5 | 277 | 447 | 16 | 190 | 4.15e-25 | 102 |
MS.gene81577.t1 | MTR_7g060220 | 26.638 | 458 | 267 | 16 | 23 | 448 | 16 | 436 | 9.03e-24 | 103 |
MS.gene81577.t1 | MTR_7g059810 | 26.168 | 428 | 260 | 11 | 49 | 448 | 45 | 444 | 2.27e-23 | 102 |
MS.gene81577.t1 | MTR_0182s0060 | 35.227 | 176 | 107 | 4 | 277 | 447 | 342 | 515 | 1.34e-22 | 100 |
MS.gene81577.t1 | MTR_7g060160 | 26.585 | 410 | 235 | 16 | 49 | 447 | 44 | 398 | 2.14e-22 | 99.0 |
MS.gene81577.t1 | MTR_1g040690 | 25.304 | 494 | 246 | 24 | 30 | 447 | 25 | 471 | 2.60e-22 | 99.8 |
MS.gene81577.t1 | MTR_8g042070 | 29.104 | 268 | 156 | 9 | 206 | 447 | 3 | 262 | 1.43e-21 | 94.4 |
MS.gene81577.t1 | MTR_7g059520 | 33.898 | 177 | 103 | 4 | 277 | 448 | 5 | 172 | 6.52e-21 | 90.1 |
MS.gene81577.t1 | MTR_7g059510 | 25.517 | 435 | 266 | 16 | 28 | 447 | 25 | 416 | 1.21e-20 | 94.4 |
MS.gene81577.t1 | MTR_3g079390 | 30.588 | 170 | 114 | 3 | 278 | 444 | 277 | 445 | 1.92e-20 | 94.0 |
MS.gene81577.t1 | MTR_6g009600 | 38.393 | 112 | 68 | 1 | 276 | 386 | 22 | 133 | 1.49e-17 | 80.1 |
MS.gene81577.t1 | MTR_4g009590 | 30.693 | 202 | 122 | 8 | 260 | 450 | 361 | 555 | 1.80e-16 | 82.0 |
MS.gene81577.t1 | MTR_4g009590 | 30.909 | 165 | 104 | 6 | 33 | 192 | 43 | 202 | 5.22e-11 | 65.1 |
MS.gene81577.t1 | MTR_4g015410 | 23.415 | 410 | 230 | 13 | 72 | 448 | 12 | 370 | 3.29e-16 | 80.5 |
MS.gene81577.t1 | MTR_4g112660 | 26.510 | 298 | 175 | 10 | 171 | 450 | 90 | 361 | 9.17e-16 | 79.0 |
MS.gene81577.t1 | MTR_2g036310 | 30.573 | 157 | 100 | 5 | 299 | 447 | 2 | 157 | 9.87e-15 | 72.4 |
MS.gene81577.t1 | MTR_4g009620 | 30.303 | 198 | 120 | 8 | 264 | 450 | 363 | 553 | 1.25e-14 | 76.6 |
MS.gene81577.t1 | MTR_7g068160 | 29.500 | 200 | 100 | 8 | 7 | 188 | 17 | 193 | 4.55e-13 | 71.6 |
MS.gene81577.t1 | MTR_4g009340 | 29.798 | 198 | 131 | 5 | 259 | 450 | 360 | 555 | 7.53e-13 | 70.9 |
MS.gene81577.t1 | MTR_4g009340 | 29.224 | 219 | 130 | 9 | 33 | 241 | 43 | 246 | 6.00e-12 | 68.2 |
MS.gene81577.t1 | MTR_7g068070 | 29.341 | 167 | 100 | 5 | 30 | 188 | 27 | 183 | 2.35e-12 | 69.3 |
MS.gene81577.t1 | MTR_7g017620 | 26.531 | 196 | 137 | 4 | 259 | 450 | 350 | 542 | 4.90e-12 | 68.2 |
MS.gene81577.t1 | MTR_7g017620 | 28.571 | 168 | 110 | 5 | 33 | 195 | 42 | 204 | 6.49e-11 | 64.7 |
MS.gene81577.t1 | MTR_7g067940 | 28.994 | 169 | 94 | 4 | 30 | 188 | 27 | 179 | 5.57e-12 | 68.2 |
MS.gene81577.t1 | MTR_4g015450 | 24.609 | 256 | 137 | 9 | 234 | 448 | 231 | 471 | 9.14e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81577.t1 | AT3G50120 | 34.354 | 457 | 264 | 13 | 9 | 448 | 86 | 523 | 1.40e-81 | 261 |
MS.gene81577.t1 | AT3G50170 | 34.725 | 455 | 263 | 13 | 9 | 448 | 96 | 531 | 2.35e-79 | 256 |
MS.gene81577.t1 | AT3G50140 | 32.747 | 455 | 277 | 11 | 7 | 448 | 93 | 531 | 9.89e-79 | 254 |
MS.gene81577.t1 | AT3G50150 | 34.943 | 435 | 248 | 10 | 29 | 448 | 87 | 501 | 8.72e-78 | 251 |
MS.gene81577.t1 | AT3G50160 | 33.860 | 443 | 261 | 11 | 7 | 448 | 82 | 493 | 7.45e-77 | 248 |
MS.gene81577.t1 | AT3G50180 | 32.538 | 461 | 265 | 11 | 1 | 448 | 153 | 580 | 3.27e-72 | 238 |
MS.gene81577.t1 | AT3G50130 | 33.260 | 454 | 270 | 15 | 9 | 448 | 122 | 556 | 3.43e-70 | 233 |
MS.gene81577.t1 | AT3G50190 | 30.045 | 446 | 272 | 12 | 7 | 448 | 76 | 485 | 9.62e-62 | 208 |
MS.gene81577.t1 | AT4G31980 | 32.220 | 419 | 244 | 12 | 31 | 445 | 292 | 674 | 3.00e-55 | 195 |
MS.gene81577.t1 | AT3G47250 | 29.630 | 459 | 288 | 17 | 8 | 451 | 36 | 474 | 1.11e-50 | 179 |
MS.gene81577.t1 | AT3G47250 | 29.630 | 459 | 288 | 17 | 8 | 451 | 36 | 474 | 1.11e-50 | 179 |
MS.gene81577.t1 | AT3G47250 | 29.630 | 459 | 288 | 17 | 8 | 451 | 36 | 474 | 1.11e-50 | 179 |
MS.gene81577.t1 | AT5G22540 | 30.166 | 421 | 257 | 15 | 16 | 426 | 15 | 408 | 5.12e-50 | 176 |
MS.gene81577.t1 | AT2G36430 | 30.260 | 423 | 268 | 10 | 33 | 451 | 46 | 445 | 9.74e-50 | 176 |
MS.gene81577.t1 | AT3G47200 | 29.545 | 440 | 273 | 16 | 20 | 444 | 34 | 451 | 2.39e-45 | 164 |
MS.gene81577.t1 | AT3G47200 | 29.545 | 440 | 273 | 16 | 20 | 444 | 34 | 451 | 2.39e-45 | 164 |
MS.gene81577.t1 | AT5G11290 | 28.571 | 413 | 263 | 11 | 34 | 445 | 35 | 416 | 7.22e-44 | 159 |
MS.gene81577.t1 | AT5G22550 | 27.489 | 462 | 263 | 15 | 34 | 448 | 46 | 482 | 1.83e-42 | 157 |
MS.gene81577.t1 | AT3G50140 | 30.088 | 339 | 208 | 11 | 7 | 333 | 93 | 414 | 1.92e-42 | 155 |
MS.gene81577.t1 | AT3G44710 | 28.310 | 491 | 261 | 20 | 20 | 448 | 35 | 496 | 1.39e-41 | 154 |
MS.gene81577.t1 | AT3G50170 | 32.508 | 323 | 185 | 12 | 9 | 317 | 96 | 399 | 1.19e-40 | 150 |
MS.gene81577.t1 | AT3G50150 | 30.086 | 349 | 193 | 11 | 29 | 351 | 87 | 410 | 7.75e-38 | 143 |
MS.gene81577.t1 | AT3G47210 | 27.869 | 427 | 273 | 14 | 9 | 430 | 70 | 466 | 4.41e-37 | 142 |
MS.gene81577.t1 | AT3G50190 | 29.814 | 322 | 189 | 11 | 7 | 328 | 76 | 360 | 1.00e-36 | 139 |
MS.gene81577.t1 | AT3G50190 | 29.814 | 322 | 189 | 11 | 7 | 328 | 76 | 360 | 1.00e-36 | 139 |
MS.gene81577.t1 | AT3G50190 | 30.000 | 310 | 181 | 10 | 7 | 316 | 76 | 349 | 1.50e-36 | 137 |
MS.gene81577.t1 | AT5G22560 | 25.470 | 479 | 275 | 15 | 34 | 448 | 49 | 509 | 2.00e-36 | 140 |
MS.gene81577.t1 | AT2G28580 | 27.972 | 429 | 265 | 12 | 34 | 445 | 43 | 444 | 9.83e-36 | 138 |
MS.gene81577.t1 | AT2G28580 | 27.842 | 431 | 267 | 12 | 34 | 447 | 111 | 514 | 2.49e-35 | 137 |
MS.gene81577.t1 | AT2G28580 | 27.842 | 431 | 267 | 12 | 34 | 447 | 125 | 528 | 2.56e-35 | 138 |
MS.gene81577.t1 | AT2G28580 | 27.685 | 419 | 266 | 12 | 34 | 447 | 111 | 497 | 1.37e-34 | 135 |
MS.gene81577.t1 | AT2G28580 | 27.685 | 419 | 266 | 12 | 34 | 447 | 125 | 511 | 1.52e-34 | 135 |
MS.gene81577.t1 | AT5G11290 | 27.321 | 377 | 243 | 10 | 70 | 445 | 1 | 347 | 1.51e-32 | 127 |
MS.gene81577.t1 | AT2G44930 | 27.333 | 450 | 260 | 18 | 30 | 448 | 82 | 495 | 9.70e-32 | 127 |
MS.gene81577.t1 | AT5G22550 | 24.891 | 458 | 231 | 14 | 34 | 448 | 46 | 433 | 9.73e-32 | 126 |
MS.gene81577.t1 | AT1G67150 | 25.734 | 443 | 270 | 17 | 30 | 451 | 4 | 408 | 1.92e-29 | 119 |
MS.gene81577.t1 | AT1G67150 | 25.734 | 443 | 270 | 17 | 30 | 451 | 4 | 408 | 1.92e-29 | 119 |
MS.gene81577.t1 | AT1G67150 | 25.503 | 447 | 270 | 17 | 30 | 451 | 4 | 412 | 6.81e-29 | 117 |
MS.gene81577.t1 | AT2G28580 | 26.810 | 373 | 229 | 12 | 34 | 388 | 125 | 471 | 6.44e-24 | 104 |
MS.gene81577.t1 | AT1G65985 | 23.904 | 456 | 253 | 16 | 27 | 426 | 9 | 426 | 2.12e-22 | 99.8 |
MS.gene81577.t1 | AT1G65985 | 23.904 | 456 | 253 | 16 | 27 | 426 | 9 | 426 | 2.12e-22 | 99.8 |
MS.gene81577.t1 | AT1G67150 | 23.529 | 442 | 238 | 15 | 30 | 451 | 4 | 365 | 2.78e-21 | 95.5 |
MS.gene81577.t1 | AT3G60470 | 33.136 | 169 | 111 | 2 | 278 | 445 | 364 | 531 | 4.63e-19 | 90.1 |
MS.gene81577.t1 | AT3G02645 | 28.750 | 160 | 112 | 1 | 270 | 427 | 339 | 498 | 5.46e-16 | 80.5 |
MS.gene81577.t1 | AT3G44695 | 26.786 | 112 | 81 | 1 | 275 | 385 | 27 | 138 | 2.19e-11 | 63.5 |
Find 94 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCATCATTTCAATGAATTT+TGG | 0.154210 | 5.1:-68253530 | None:intergenic |
GGGGAAATGTATGCATATTT+TGG | 0.178569 | 5.1:+68254629 | MS.gene81577:CDS |
TTTGGTCCTTATTACCATTA+TGG | 0.187428 | 5.1:+68253341 | MS.gene81577:CDS |
TCTTGATGGTTGTTTCATTT+TGG | 0.199274 | 5.1:+68253553 | MS.gene81577:CDS |
CTTGGGGTTTGAAGGCATTT+TGG | 0.201739 | 5.1:-68253310 | None:intergenic |
ACAAGTCACTTGATCCAATT+TGG | 0.235857 | 5.1:+68253495 | MS.gene81577:CDS |
GGAGGAGAATTTAAAGCTTA+TGG | 0.239916 | 5.1:+68253364 | MS.gene81577:CDS |
GGTGTGTTGTTTGTCCAAAT+TGG | 0.287142 | 5.1:-68253509 | None:intergenic |
GTTCAAATGCAATGAGATTA+AGG | 0.289752 | 5.1:-68254902 | None:intergenic |
TTGGTCCTTATTACCATTAT+GGG | 0.293233 | 5.1:+68253342 | MS.gene81577:CDS |
TCCTCCCCATAATGGTAATA+AGG | 0.297104 | 5.1:-68253347 | None:intergenic |
GCGATCCATGGAAATTTCTT+TGG | 0.298736 | 5.1:-68255084 | None:intergenic |
TGCTCAATTGTTCAACTCAT+TGG | 0.355403 | 5.1:+68255061 | MS.gene81577:CDS |
CATTCCCAAGAGCATTGATT+AGG | 0.356438 | 5.1:-68255028 | None:intergenic |
TCCTTCTCATGAGCTATTGT+AGG | 0.360207 | 5.1:-68253233 | None:intergenic |
AGCATGTCACGCTTTATATA+TGG | 0.364935 | 5.1:-68253668 | None:intergenic |
ATTGAAATGATGATTCTTGA+TGG | 0.377780 | 5.1:+68253539 | MS.gene81577:CDS |
GTACGAGTCTCTCAACTCTT+TGG | 0.379734 | 5.1:-68253474 | None:intergenic |
TTAAATTCTCCTCCCCATAA+TGG | 0.380138 | 5.1:-68253355 | None:intergenic |
CGTTGGAATAACAACTCAAT+AGG | 0.398267 | 5.1:-68253437 | None:intergenic |
AAACCCCAAGCAATTTCCTT+TGG | 0.409307 | 5.1:+68253323 | MS.gene81577:CDS |
AAGAAGAAAATCGAAGAGTT+GGG | 0.409513 | 5.1:+68254609 | MS.gene81577:CDS |
GAGGGTACTTTGTAAATTGA+AGG | 0.411214 | 5.1:-68253269 | None:intergenic |
AAGGAGGTATCCTTCATGAT+TGG | 0.412501 | 5.1:-68254582 | None:intergenic |
GGAAATTGCTTGGGGTTTGA+AGG | 0.414602 | 5.1:-68253318 | None:intergenic |
TGAAGCTTACTCCAGCCTCT+TGG | 0.417799 | 5.1:-68254782 | None:intergenic |
AGGACCAAAGGAAATTGCTT+GGG | 0.418110 | 5.1:-68253327 | None:intergenic |
GGGATCCTAATCAATGCTCT+TGG | 0.431163 | 5.1:+68255023 | MS.gene81577:CDS |
ATCCCACTTCGACTGAGAAA+TGG | 0.438339 | 5.1:-68255005 | None:intergenic |
CAAGAAGAAAATCGAAGAGT+TGG | 0.442960 | 5.1:+68254608 | MS.gene81577:CDS |
GATCGAAGGAAACGTCTTGG+AGG | 0.445532 | 5.1:-68254824 | None:intergenic |
AGCTCATGAGAAGGAACAAT+GGG | 0.450143 | 5.1:+68253241 | MS.gene81577:CDS |
GAATAACAGTAAGAGCAAAA+AGG | 0.453820 | 5.1:-68255241 | None:intergenic |
TCATTCTTATCATAGTCAAT+CGG | 0.460865 | 5.1:-68253608 | None:intergenic |
CATTCTTATCATAGTCAATC+GGG | 0.465502 | 5.1:-68253607 | None:intergenic |
TTCATGATTGGGAATGGCCA+TGG | 0.466871 | 5.1:-68254570 | None:intergenic |
GCAATGGAGCTCCAAGAGGC+TGG | 0.474190 | 5.1:+68254771 | MS.gene81577:CDS |
AGGAGGTATCCTTCATGATT+GGG | 0.478474 | 5.1:-68254581 | None:intergenic |
GATAAGAATGATCATGTGTT+TGG | 0.482566 | 5.1:+68253620 | MS.gene81577:CDS |
CTGTCATCTAATTTCATGAC+CGG | 0.491157 | 5.1:-68254864 | None:intergenic |
AATGTATGAAGAACCGTCAT+AGG | 0.496770 | 5.1:-68253710 | None:intergenic |
GGATCCTAATCAATGCTCTT+GGG | 0.503806 | 5.1:+68255024 | MS.gene81577:CDS |
TGGCCACTTGATTCAAGCGT+TGG | 0.507528 | 5.1:-68253454 | None:intergenic |
GAACGTCTCCACGTTGGAGC+TGG | 0.513702 | 5.1:+68254921 | MS.gene81577:CDS |
AAGTTCTCCATCGCGATCCA+TGG | 0.513748 | 5.1:-68255096 | None:intergenic |
TCATAAAATTTCTTAACCCA+TGG | 0.516784 | 5.1:+68254553 | MS.gene81577:CDS |
AAGGACCAAAGGAAATTGCT+TGG | 0.525829 | 5.1:-68253328 | None:intergenic |
GATCATGTGTTTGGTGAACA+TGG | 0.539005 | 5.1:+68253629 | MS.gene81577:CDS |
CTCGATCGAAGGAAACGTCT+TGG | 0.541118 | 5.1:-68254827 | None:intergenic |
TCATGATTGGGAATGGCCAT+GGG | 0.543094 | 5.1:-68254569 | None:intergenic |
GTAGAAAACCCTGGAAAAGT+TGG | 0.544452 | 5.1:+68255150 | MS.gene81577:CDS |
TGGTCCTTATTACCATTATG+GGG | 0.545288 | 5.1:+68253343 | MS.gene81577:CDS |
GTCCAACTCCGTGACTTGTG+AGG | 0.551771 | 5.1:-68253288 | None:intergenic |
TTATATTATTCGATCTGCAA+TGG | 0.555359 | 5.1:+68254755 | MS.gene81577:CDS |
ATTGGCCAAAGAAATTTCCA+TGG | 0.557444 | 5.1:+68255079 | MS.gene81577:CDS |
CACCATCATCGACACTGCTA+AGG | 0.559015 | 5.1:+68254977 | MS.gene81577:CDS |
ATCCTTAGCAGTGTCGATGA+TGG | 0.562676 | 5.1:-68254979 | None:intergenic |
ATTCCAACGCTTGAATCAAG+TGG | 0.566802 | 5.1:+68253451 | MS.gene81577:CDS |
GTATCCTTCATGATTGGGAA+TGG | 0.579571 | 5.1:-68254576 | None:intergenic |
TTCCATTTCTCAGTCGAAGT+GGG | 0.580235 | 5.1:+68255003 | MS.gene81577:CDS |
CAAAGTACCCTCACAAGTCA+CGG | 0.580405 | 5.1:+68253280 | MS.gene81577:CDS |
ATTCAGACTATATACACAGC+TGG | 0.584635 | 5.1:+68255260 | MS.gene81577:CDS |
TCGAGGTGTTCTTAGACTCC+CGG | 0.585861 | 5.1:+68254845 | MS.gene81577:CDS |
ACCCTCACAAGTCACGGAGT+TGG | 0.588381 | 5.1:+68253286 | MS.gene81577:CDS |
GGACCAAAGGAAATTGCTTG+GGG | 0.594003 | 5.1:-68253326 | None:intergenic |
TCCAACTCCGTGACTTGTGA+GGG | 0.598517 | 5.1:-68253287 | None:intergenic |
AGAAGAAAATCGAAGAGTTG+GGG | 0.601535 | 5.1:+68254610 | MS.gene81577:CDS |
TAGCTCATGAGAAGGAACAA+TGG | 0.605621 | 5.1:+68253240 | MS.gene81577:CDS |
TCTAAGAACACCTCGATCGA+AGG | 0.606026 | 5.1:-68254838 | None:intergenic |
GTTCCATTTCTCAGTCGAAG+TGG | 0.609730 | 5.1:+68255002 | MS.gene81577:CDS |
ATAATGGTAATAAGGACCAA+AGG | 0.614397 | 5.1:-68253339 | None:intergenic |
TCCTTATTACCATTATGGGG+AGG | 0.615898 | 5.1:+68253346 | MS.gene81577:CDS |
ATGGCCATTCCCAATCATGA+AGG | 0.618512 | 5.1:+68254572 | MS.gene81577:CDS |
CAAGACGTTTCCTTCGATCG+AGG | 0.619027 | 5.1:+68254828 | MS.gene81577:CDS |
GCTTCAAGAAAAGCGAAACA+AGG | 0.619990 | 5.1:+68254799 | MS.gene81577:CDS |
TCCTACAATAGCTCATGAGA+AGG | 0.627480 | 5.1:+68253232 | MS.gene81577:CDS |
GAAATTTCCATGGATCGCGA+TGG | 0.630278 | 5.1:+68255089 | MS.gene81577:CDS |
GCATTTGAACGTCTCCACGT+TGG | 0.633567 | 5.1:+68254915 | MS.gene81577:CDS |
ACATGGAGTTAGAAATCAAG+TGG | 0.634087 | 5.1:+68253174 | None:intergenic |
AATGAAGAGATGAAGAACAA+TGG | 0.634106 | 5.1:+68253209 | MS.gene81577:CDS |
TGTCATCTAATTTCATGACC+GGG | 0.638294 | 5.1:-68254863 | None:intergenic |
AGCACTACTGTAGAAAACCC+TGG | 0.644845 | 5.1:+68255141 | MS.gene81577:CDS |
ATGGAGAACTTGAGATGGTG+AGG | 0.645009 | 5.1:+68255108 | MS.gene81577:CDS |
TGAGAATCAGATACCTATGA+CGG | 0.647100 | 5.1:+68253697 | MS.gene81577:CDS |
ATCTGCAATGGAGCTCCAAG+AGG | 0.651366 | 5.1:+68254767 | MS.gene81577:CDS |
TCGCGATGGAGAACTTGAGA+TGG | 0.652534 | 5.1:+68255103 | MS.gene81577:CDS |
TCAGTAAAGAAGAAACTACA+AGG | 0.653245 | 5.1:-68255550 | None:intergenic |
GTTTGAAATCAACATTGTGG+AGG | 0.654113 | 5.1:+68253739 | MS.gene81577:CDS |
ACAAGAGACACCATAGCCCA+AGG | 0.660534 | 5.1:-68255206 | None:intergenic |
CCACGTTGGAGCTGGTAACG+AGG | 0.664570 | 5.1:+68254929 | MS.gene81577:CDS |
ATCATGTGTTTGGTGAACAT+GGG | 0.674935 | 5.1:+68253630 | MS.gene81577:CDS |
TGAGTTTGAAATCAACATTG+TGG | 0.693644 | 5.1:+68253736 | MS.gene81577:CDS |
TGGAGAACTTGAGATGGTGA+GGG | 0.695825 | 5.1:+68255109 | MS.gene81577:CDS |
CCTCGTTACCAGCTCCAACG+TGG | 0.696903 | 5.1:-68254929 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTAAATAGGAAAAATAA+TGG | - | chr5.1:68254430-68254449 | None:intergenic | 10.0% |
!! | AGCTATAAACATAATTAAAT+AGG | - | chr5.1:68254441-68254460 | None:intergenic | 15.0% |
!! | ATAATGAAACTTTATAATCT+AGG | - | chr5.1:68253838-68253857 | None:intergenic | 15.0% |
!! | TCTAATCTTTAAATACAAAA+TGG | - | chr5.1:68253928-68253947 | None:intergenic | 15.0% |
!!! | AACATCTTTTATATGTTTTA+TGG | + | chr5.1:68254953-68254972 | MS.gene81577:CDS | 15.0% |
!!! | AAGAAATTTGTTAAATTTTG+AGG | + | chr5.1:68254719-68254738 | MS.gene81577:CDS | 15.0% |
!! | AATAATATCATGTAAGATGT+TGG | - | chr5.1:68254094-68254113 | None:intergenic | 20.0% |
!! | AATAATGTATATTGTCAACT+AGG | + | chr5.1:68254160-68254179 | MS.gene81577:intron | 20.0% |
!!! | ATCATCATTTCAATGAATTT+TGG | - | chr5.1:68253533-68253552 | None:intergenic | 20.0% |
!!! | ATCTCTTTAAAAAATGAAGA+AGG | - | chr5.1:68253409-68253428 | None:intergenic | 20.0% |
!!! | CAATTTTATATGAAACATAC+AGG | + | chr5.1:68254500-68254519 | MS.gene81577:intron | 20.0% |
!!! | GTAATTGATTTGTAAAATGT+TGG | - | chr5.1:68253806-68253825 | None:intergenic | 20.0% |
!!! | GTAGTACAATCTTTTTTTTT+TGG | - | chr5.1:68254237-68254256 | None:intergenic | 20.0% |
!!! | TCTCTTTAAAAAATGAAGAA+GGG | - | chr5.1:68253408-68253427 | None:intergenic | 20.0% |
!!! | TTTCTTTTTGATTCTTTTAG+CGG | - | chr5.1:68254705-68254724 | None:intergenic | 20.0% |
! | ATATGAGCCTCATATAAATT+TGG | + | chr5.1:68255372-68255391 | MS.gene81577:intron | 25.0% |
! | ATTGAAATGATGATTCTTGA+TGG | + | chr5.1:68253539-68253558 | MS.gene81577:CDS | 25.0% |
! | CAAAGATAAAACATATGCAT+TGG | - | chr5.1:68254002-68254021 | None:intergenic | 25.0% |
! | CCTTGAGTATAAAAATTCAA+AGG | - | chr5.1:68254384-68254403 | None:intergenic | 25.0% |
! | TCATAAAATTTCTTAACCCA+TGG | + | chr5.1:68254553-68254572 | MS.gene81577:CDS | 25.0% |
! | TCATTCTTATCATAGTCAAT+CGG | - | chr5.1:68253611-68253630 | None:intergenic | 25.0% |
! | TGTGAATGAGTAGAAAAATA+TGG | + | chr5.1:68254120-68254139 | MS.gene81577:intron | 25.0% |
! | TTATATTATTCGATCTGCAA+TGG | + | chr5.1:68254755-68254774 | MS.gene81577:CDS | 25.0% |
!! | CCTTTGAATTTTTATACTCA+AGG | + | chr5.1:68254381-68254400 | MS.gene81577:intron | 25.0% |
!! | GTTTTTCCATTTATTCCAAA+AGG | + | chr5.1:68255471-68255490 | MS.gene81577:intron | 25.0% |
!! | TACAGAAAAAGTATGATACA+AGG | + | chr5.1:68254657-68254676 | MS.gene81577:CDS | 25.0% |
!! | TAGAAAAATGTTGTGTTGAT+TGG | + | chr5.1:68254462-68254481 | MS.gene81577:intron | 25.0% |
!!! | CACTTATTTTAGAAATCCTT+GGG | + | chr5.1:68255190-68255209 | MS.gene81577:CDS | 25.0% |
!!! | CTTCATTTTTTAAAGAGATG+TGG | + | chr5.1:68253410-68253429 | MS.gene81577:CDS | 25.0% |
!!! | TTCTTTTTGATTCTTTTAGC+GGG | - | chr5.1:68254704-68254723 | None:intergenic | 25.0% |
!!! | TTTCATTTTGGAGATTTTGA+GGG | + | chr5.1:68253565-68253584 | MS.gene81577:CDS | 25.0% |
AAAGGAAAAATTGTGTCTCA+AGG | - | chr5.1:68254366-68254385 | None:intergenic | 30.0% | |
AAGAAGAAAATCGAAGAGTT+GGG | + | chr5.1:68254609-68254628 | MS.gene81577:CDS | 30.0% | |
AATGAAGAGATGAAGAACAA+TGG | + | chr5.1:68253209-68253228 | MS.gene81577:CDS | 30.0% | |
ATAATGGTAATAAGGACCAA+AGG | - | chr5.1:68253342-68253361 | None:intergenic | 30.0% | |
ATTCCCACCAAATTTATATG+AGG | - | chr5.1:68255382-68255401 | None:intergenic | 30.0% | |
CATTCTTATCATAGTCAATC+GGG | - | chr5.1:68253610-68253629 | None:intergenic | 30.0% | |
GAATAACAGTAAGAGCAAAA+AGG | - | chr5.1:68255244-68255263 | None:intergenic | 30.0% | |
GATAAGAATGATCATGTGTT+TGG | + | chr5.1:68253620-68253639 | MS.gene81577:CDS | 30.0% | |
GTTCAAATGCAATGAGATTA+AGG | - | chr5.1:68254905-68254924 | None:intergenic | 30.0% | |
TTGGTCCTTATTACCATTAT+GGG | + | chr5.1:68253342-68253361 | MS.gene81577:CDS | 30.0% | |
TTTGGTCCTTATTACCATTA+TGG | + | chr5.1:68253341-68253360 | MS.gene81577:CDS | 30.0% | |
! | ACTTTATAATCTAGGACGAA+CGG | - | chr5.1:68253830-68253849 | None:intergenic | 30.0% |
! | GTAAGAGTATAGTGTGATTA+TGG | - | chr5.1:68255509-68255528 | None:intergenic | 30.0% |
! | TGAGTTTGAAATCAACATTG+TGG | + | chr5.1:68253736-68253755 | MS.gene81577:CDS | 30.0% |
! | TTCGATTTTCTTCTTGAACA+AGG | - | chr5.1:68254604-68254623 | None:intergenic | 30.0% |
!! | GTTTCATTTTGGAGATTTTG+AGG | + | chr5.1:68253564-68253583 | MS.gene81577:CDS | 30.0% |
!! | TCTTGATGGTTGTTTCATTT+TGG | + | chr5.1:68253553-68253572 | MS.gene81577:CDS | 30.0% |
!! | TCTTTTTGATTCTTTTAGCG+GGG | - | chr5.1:68254703-68254722 | None:intergenic | 30.0% |
!!! | GCACTTATTTTAGAAATCCT+TGG | + | chr5.1:68255189-68255208 | MS.gene81577:CDS | 30.0% |
AATGTATGAAGAACCGTCAT+AGG | - | chr5.1:68253713-68253732 | None:intergenic | 35.0% | |
ACAAGTCACTTGATCCAATT+TGG | + | chr5.1:68253495-68253514 | MS.gene81577:CDS | 35.0% | |
AGAAGAAAATCGAAGAGTTG+GGG | + | chr5.1:68254610-68254629 | MS.gene81577:CDS | 35.0% | |
AGCATGTCACGCTTTATATA+TGG | - | chr5.1:68253671-68253690 | None:intergenic | 35.0% | |
AGCTGGTCAATACTATCAAA+AGG | + | chr5.1:68255277-68255296 | MS.gene81577:intron | 35.0% | |
ATTCAGACTATATACACAGC+TGG | + | chr5.1:68255260-68255279 | MS.gene81577:CDS | 35.0% | |
ATTGGCCAAAGAAATTTCCA+TGG | + | chr5.1:68255079-68255098 | MS.gene81577:CDS | 35.0% | |
CAAGAAGAAAATCGAAGAGT+TGG | + | chr5.1:68254608-68254627 | MS.gene81577:CDS | 35.0% | |
CGTTGGAATAACAACTCAAT+AGG | - | chr5.1:68253440-68253459 | None:intergenic | 35.0% | |
CTGTCATCTAATTTCATGAC+CGG | - | chr5.1:68254867-68254886 | None:intergenic | 35.0% | |
GAGCCTCATATAAATTTGGT+GGG | + | chr5.1:68255376-68255395 | MS.gene81577:intron | 35.0% | |
TCAACTAGGTCATCTATTGA+GGG | + | chr5.1:68254174-68254193 | MS.gene81577:intron | 35.0% | |
TCAACTAGGTCATCTATTGA+GGG | - | chr5.1:68254193-68254174 | None:intergenic | 35.0% | |
TGAGAATCAGATACCTATGA+CGG | + | chr5.1:68253697-68253716 | MS.gene81577:CDS | 35.0% | |
TGAGCCTCATATAAATTTGG+TGG | + | chr5.1:68255375-68255394 | MS.gene81577:intron | 35.0% | |
TGCTCAATTGTTCAACTCAT+TGG | + | chr5.1:68255061-68255080 | MS.gene81577:CDS | 35.0% | |
TGGTCCTTATTACCATTATG+GGG | + | chr5.1:68253343-68253362 | MS.gene81577:CDS | 35.0% | |
TGTCATCTAATTTCATGACC+GGG | - | chr5.1:68254866-68254885 | None:intergenic | 35.0% | |
TTAAATTCTCCTCCCCATAA+TGG | - | chr5.1:68253358-68253377 | None:intergenic | 35.0% | |
! | ATATGCATTGGTACATGTGT+CGG | - | chr5.1:68253990-68254009 | None:intergenic | 35.0% |
! | ATCATGTGTTTGGTGAACAT+GGG | + | chr5.1:68253630-68253649 | MS.gene81577:CDS | 35.0% |
! | CTTCTCACACACTCTTTTTA+TGG | + | chr5.1:68255322-68255341 | MS.gene81577:intron | 35.0% |
! | GATTTTCTTCTTGAACAAGG+AGG | - | chr5.1:68254601-68254620 | None:intergenic | 35.0% |
! | GGAGGAGAATTTAAAGCTTA+TGG | + | chr5.1:68253364-68253383 | MS.gene81577:CDS | 35.0% |
! | GGGGAAATGTATGCATATTT+TGG | + | chr5.1:68254629-68254648 | MS.gene81577:CDS | 35.0% |
! | GTTTGAAATCAACATTGTGG+AGG | + | chr5.1:68253739-68253758 | MS.gene81577:CDS | 35.0% |
!! | CTTTTTGATTCTTTTAGCGG+GGG | - | chr5.1:68254702-68254721 | None:intergenic | 35.0% |
!! | GAGGGTACTTTGTAAATTGA+AGG | - | chr5.1:68253272-68253291 | None:intergenic | 35.0% |
!! | TTTTAGAAATCCTTGGGCTA+TGG | + | chr5.1:68255196-68255215 | MS.gene81577:CDS | 35.0% |
AAACCCCAAGCAATTTCCTT+TGG | + | chr5.1:68253323-68253342 | MS.gene81577:CDS | 40.0% | |
AAGGACCAAAGGAAATTGCT+TGG | - | chr5.1:68253331-68253350 | None:intergenic | 40.0% | |
AGCTCATGAGAAGGAACAAT+GGG | + | chr5.1:68253241-68253260 | MS.gene81577:CDS | 40.0% | |
AGGACCAAAGGAAATTGCTT+GGG | - | chr5.1:68253330-68253349 | None:intergenic | 40.0% | |
ATTCCAACGCTTGAATCAAG+TGG | + | chr5.1:68253451-68253470 | MS.gene81577:CDS | 40.0% | |
GAGGCTCATATGATTTGATG+TGG | - | chr5.1:68255363-68255382 | None:intergenic | 40.0% | |
GCGATCCATGGAAATTTCTT+TGG | - | chr5.1:68255087-68255106 | None:intergenic | 40.0% | |
GCTTCAAGAAAAGCGAAACA+AGG | + | chr5.1:68254799-68254818 | MS.gene81577:CDS | 40.0% | |
GGATCCTAATCAATGCTCTT+GGG | + | chr5.1:68255024-68255043 | MS.gene81577:CDS | 40.0% | |
GTAGAAAACCCTGGAAAAGT+TGG | + | chr5.1:68255150-68255169 | MS.gene81577:CDS | 40.0% | |
GTATCCTTCATGATTGGGAA+TGG | - | chr5.1:68254579-68254598 | None:intergenic | 40.0% | |
GTCAACTAGGTCATCTATTG+AGG | + | chr5.1:68254173-68254192 | MS.gene81577:intron | 40.0% | |
GTCAACTAGGTCATCTATTG+AGG | - | chr5.1:68254192-68254173 | None:intergenic | 40.0% | |
TAGCTCATGAGAAGGAACAA+TGG | + | chr5.1:68253240-68253259 | MS.gene81577:CDS | 40.0% | |
TCCTACAATAGCTCATGAGA+AGG | + | chr5.1:68253232-68253251 | MS.gene81577:CDS | 40.0% | |
TCCTCCCCATAATGGTAATA+AGG | - | chr5.1:68253350-68253369 | None:intergenic | 40.0% | |
TCCTTATTACCATTATGGGG+AGG | + | chr5.1:68253346-68253365 | MS.gene81577:CDS | 40.0% | |
TCCTTCTCATGAGCTATTGT+AGG | - | chr5.1:68253236-68253255 | None:intergenic | 40.0% | |
TTCCATTTCTCAGTCGAAGT+GGG | + | chr5.1:68255003-68255022 | MS.gene81577:CDS | 40.0% | |
! | GATCATGTGTTTGGTGAACA+TGG | + | chr5.1:68253629-68253648 | MS.gene81577:CDS | 40.0% |
!! | AAGGAGGTATCCTTCATGAT+TGG | - | chr5.1:68254585-68254604 | None:intergenic | 40.0% |
!! | AGGAGGTATCCTTCATGATT+GGG | - | chr5.1:68254584-68254603 | None:intergenic | 40.0% |
!! | CATTCCCAAGAGCATTGATT+AGG | - | chr5.1:68255031-68255050 | None:intergenic | 40.0% |
!! | GGTGTGTTGTTTGTCCAAAT+TGG | - | chr5.1:68253512-68253531 | None:intergenic | 40.0% |
!!! | GCGAGACCTTTTGGAATAAA+TGG | - | chr5.1:68255480-68255499 | None:intergenic | 40.0% |
AGCACTACTGTAGAAAACCC+TGG | + | chr5.1:68255141-68255160 | MS.gene81577:CDS | 45.0% | |
ATCCCACTTCGACTGAGAAA+TGG | - | chr5.1:68255008-68255027 | None:intergenic | 45.0% | |
ATGGAGAACTTGAGATGGTG+AGG | + | chr5.1:68255108-68255127 | MS.gene81577:CDS | 45.0% | |
ATGGCCATTCCCAATCATGA+AGG | + | chr5.1:68254572-68254591 | MS.gene81577:CDS | 45.0% | |
CTAGGTCATCTATTGAGGGA+AGG | - | chr5.1:68254197-68254178 | None:intergenic | 45.0% | |
CTAGGTCATCTATTGAGGGA+CGG | + | chr5.1:68254178-68254197 | MS.gene81577:intron | 45.0% | |
GAAATTTCCATGGATCGCGA+TGG | + | chr5.1:68255089-68255108 | MS.gene81577:CDS | 45.0% | |
GGAAATTGCTTGGGGTTTGA+AGG | - | chr5.1:68253321-68253340 | None:intergenic | 45.0% | |
GGACCAAAGGAAATTGCTTG+GGG | - | chr5.1:68253329-68253348 | None:intergenic | 45.0% | |
GGGATCCTAATCAATGCTCT+TGG | + | chr5.1:68255023-68255042 | MS.gene81577:CDS | 45.0% | |
GTACGAGTCTCTCAACTCTT+TGG | - | chr5.1:68253477-68253496 | None:intergenic | 45.0% | |
GTCATCTATTGAGGGAAGGA+GGG | - | chr5.1:68253957-68253976 | None:intergenic | 45.0% | |
GTTCCATTTCTCAGTCGAAG+TGG | + | chr5.1:68255002-68255021 | MS.gene81577:CDS | 45.0% | |
TACATGTGTCGGAGTCAACT+AGG | - | chr5.1:68253979-68253998 | None:intergenic | 45.0% | |
TCATGATTGGGAATGGCCAT+GGG | - | chr5.1:68254572-68254591 | None:intergenic | 45.0% | |
TCTAAGAACACCTCGATCGA+AGG | - | chr5.1:68254841-68254860 | None:intergenic | 45.0% | |
TGGAGAACTTGAGATGGTGA+GGG | + | chr5.1:68255109-68255128 | MS.gene81577:CDS | 45.0% | |
TTCATGATTGGGAATGGCCA+TGG | - | chr5.1:68254573-68254592 | None:intergenic | 45.0% | |
! | CAAAGTACCCTCACAAGTCA+CGG | + | chr5.1:68253280-68253299 | MS.gene81577:CDS | 45.0% |
!! | ATCCTTAGCAGTGTCGATGA+TGG | - | chr5.1:68254982-68255001 | None:intergenic | 45.0% |
!!! | ATTCTTTTAGCGGGGGTGTT+GGG | - | chr5.1:68254695-68254714 | None:intergenic | 45.0% |
!!! | CTTGGGGTTTGAAGGCATTT+TGG | - | chr5.1:68253313-68253332 | None:intergenic | 45.0% |
!! | AATTAAAAATACATATTAAA+AGG | + | chr5.1:68255420-68255439 | MS.gene81577:intron | 5.0% |
!!! | TTTTAATATGTATTTTTAAT+TGG | - | chr5.1:68255421-68255440 | None:intergenic | 5.0% |
AAGTTCTCCATCGCGATCCA+TGG | - | chr5.1:68255099-68255118 | None:intergenic | 50.0% | |
ACAAGAGACACCATAGCCCA+AGG | - | chr5.1:68255209-68255228 | None:intergenic | 50.0% | |
ATCTGCAATGGAGCTCCAAG+AGG | + | chr5.1:68254767-68254786 | MS.gene81577:CDS | 50.0% | |
CAAGACGTTTCCTTCGATCG+AGG | + | chr5.1:68254828-68254847 | MS.gene81577:CDS | 50.0% | |
CACCATCATCGACACTGCTA+AGG | + | chr5.1:68254977-68254996 | MS.gene81577:CDS | 50.0% | |
CTCGATCGAAGGAAACGTCT+TGG | - | chr5.1:68254830-68254849 | None:intergenic | 50.0% | |
GATCGAAGGAAACGTCTTGG+AGG | - | chr5.1:68254827-68254846 | None:intergenic | 50.0% | |
GCATTTGAACGTCTCCACGT+TGG | + | chr5.1:68254915-68254934 | MS.gene81577:CDS | 50.0% | |
GGTCATCTATTGAGGGAAGG+AGG | - | chr5.1:68253958-68253977 | None:intergenic | 50.0% | |
GTCATCTATTGAGGGACGGA+GGG | + | chr5.1:68254182-68254201 | MS.gene81577:intron | 50.0% | |
TCGCGATGGAGAACTTGAGA+TGG | + | chr5.1:68255103-68255122 | MS.gene81577:CDS | 50.0% | |
TGAAGCTTACTCCAGCCTCT+TGG | - | chr5.1:68254785-68254804 | None:intergenic | 50.0% | |
TGGCCACTTGATTCAAGCGT+TGG | - | chr5.1:68253457-68253476 | None:intergenic | 50.0% | |
! | ACTTGCACGCCAACTTTTCC+AGG | - | chr5.1:68255162-68255181 | None:intergenic | 50.0% |
! | CTTGCACGCCAACTTTTCCA+GGG | - | chr5.1:68255161-68255180 | None:intergenic | 50.0% |
! | TCCAACTCCGTGACTTGTGA+GGG | - | chr5.1:68253290-68253309 | None:intergenic | 50.0% |
! | TCGAGGTGTTCTTAGACTCC+CGG | + | chr5.1:68254845-68254864 | MS.gene81577:CDS | 50.0% |
! | TGGACGATTGCGAGACCTTT+TGG | - | chr5.1:68255489-68255508 | None:intergenic | 50.0% |
!! | GATTCTTTTAGCGGGGGTGT+TGG | - | chr5.1:68254696-68254715 | None:intergenic | 50.0% |
ACCCTCACAAGTCACGGAGT+TGG | + | chr5.1:68253286-68253305 | MS.gene81577:CDS | 55.0% | |
GGTCATCTATTGAGGGACGG+AGG | + | chr5.1:68254181-68254200 | MS.gene81577:intron | 55.0% | |
! | GTCCAACTCCGTGACTTGTG+AGG | - | chr5.1:68253291-68253310 | None:intergenic | 55.0% |
CCTCGTTACCAGCTCCAACG+TGG | - | chr5.1:68254932-68254951 | None:intergenic | 60.0% | |
GAACGTCTCCACGTTGGAGC+TGG | + | chr5.1:68254921-68254940 | MS.gene81577:CDS | 60.0% | |
GCAATGGAGCTCCAAGAGGC+TGG | + | chr5.1:68254771-68254790 | MS.gene81577:CDS | 60.0% | |
! | CCACGTTGGAGCTGGTAACG+AGG | + | chr5.1:68254929-68254948 | MS.gene81577:CDS | 60.0% |
!!! | CTTTTAGCGGGGGTGTTGGG+TGG | - | chr5.1:68254692-68254711 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 68253176 | 68255557 | 68253176 | ID=MS.gene81577 |
chr5.1 | mRNA | 68253176 | 68255557 | 68253176 | ID=MS.gene81577.t1;Parent=MS.gene81577 |
chr5.1 | exon | 68253176 | 68253760 | 68253176 | ID=MS.gene81577.t1.exon1;Parent=MS.gene81577.t1 |
chr5.1 | CDS | 68253176 | 68253760 | 68253176 | ID=cds.MS.gene81577.t1;Parent=MS.gene81577.t1 |
chr5.1 | exon | 68254522 | 68255281 | 68254522 | ID=MS.gene81577.t1.exon2;Parent=MS.gene81577.t1 |
chr5.1 | CDS | 68254522 | 68255281 | 68254522 | ID=cds.MS.gene81577.t1;Parent=MS.gene81577.t1 |
chr5.1 | exon | 68255544 | 68255557 | 68255544 | ID=MS.gene81577.t1.exon3;Parent=MS.gene81577.t1 |
chr5.1 | CDS | 68255544 | 68255557 | 68255544 | ID=cds.MS.gene81577.t1;Parent=MS.gene81577.t1 |
Gene Sequence |
Protein sequence |