Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81685.t1 | AES99764.2 | 79.4 | 170 | 7 | 1 | 1 | 170 | 1 | 142 | 5.40E-16 | 94.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81685.t1 | Q07202 | 88.2 | 169 | 6 | 1 | 1 | 169 | 1 | 155 | 1.4e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81685.t1 | G7K7D4 | 79.4 | 170 | 7 | 1 | 1 | 170 | 1 | 142 | 3.9e-16 | 94.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene81685 | 0.80106 | 1.08E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene81685 | 0.817069 | 3.99E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene81685 | 0.8034 | 3.55E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene81685 | 0.804852 | 1.77E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene81685 | 0.818116 | 2.32E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene81685 | 0.855944 | 4.49E-62 | -1.69E-46 |
| MS.gene050642 | MS.gene81685 | 0.803405 | 3.54E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene81685 | 0.803634 | 3.18E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene81685 | 0.817992 | 2.47E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene81685 | 0.818976 | 1.48E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene81685 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene052758 | MS.gene81685 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene053073 | MS.gene81685 | 0.846526 | 2.06E-59 | -1.69E-46 |
| MS.gene053209 | MS.gene81685 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene81685 | 0.833436 | 5.34E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene81685 | 0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene81685 | 0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene054327 | MS.gene81685 | 0.805946 | 1.04E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene81685 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene81685 | 0.835025 | 2.13E-56 | -1.69E-46 |
| MS.gene057396 | MS.gene81685 | 0.831399 | 1.71E-55 | -1.69E-46 |
| MS.gene057450 | MS.gene81685 | 0.802347 | 5.86E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene81685 | 0.804327 | 2.28E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene81685 | 0.80727 | 5.49E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene81685 | 0.816717 | 4.79E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene81685 | 0.829004 | 6.56E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene81685 | 0.86739 | 1.42E-65 | -1.69E-46 |
| MS.gene059899 | MS.gene81685 | 0.808028 | 3.79E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene81685 | 0.817719 | 2.85E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene81685 | 0.850869 | 1.28E-60 | -1.69E-46 |
| MS.gene061112 | MS.gene81685 | 0.860462 | 2.03E-63 | -1.69E-46 |
| MS.gene061159 | MS.gene81685 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene81685 | 0.858175 | 9.86E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81685.t1 | MTR_5g084570 | 82.000 | 50 | 8 | 1 | 1 | 49 | 1 | 50 | 1.64e-20 | 85.1 |
| MS.gene81685.t1 | MTR_5g084540 | 72.581 | 62 | 16 | 1 | 1 | 61 | 1 | 62 | 2.00e-18 | 79.3 |
| MS.gene81685.t1 | MTR_5g084470 | 76.250 | 80 | 9 | 1 | 147 | 216 | 119 | 198 | 4.18e-14 | 68.6 |
| MS.gene81685.t1 | MTR_5g084470 | 76.250 | 80 | 9 | 1 | 147 | 216 | 130 | 209 | 5.00e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 102 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTCCACCGATGCTAAAA+AGG | 0.195603 | 5.1:-66539666 | MS.gene81685:CDS |
| GTAACTACCACCACCATATT+TGG | 0.210470 | 5.1:+66538831 | None:intergenic |
| ATGGCTGTAGCCTCCATATT+TGG | 0.280339 | 5.1:+66539176 | None:intergenic |
| AATTCTCATGCTAACCTTCT+TGG | 0.293223 | 5.1:-66539735 | MS.gene81685:CDS |
| TTGAACAATGGGTTCGAAAA+AGG | 0.298712 | 5.1:-66539759 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5.1:-66539189 | MS.gene81685:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.410599 | 5.1:-66539024 | MS.gene81685:CDS |
| GAAATGAATGATGCCAAATA+TGG | 0.415776 | 5.1:-66538844 | MS.gene81685:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.421667 | 5.1:-66538910 | MS.gene81685:CDS |
| CATGCTAACCTTCTTGGCTA+TGG | 0.436026 | 5.1:-66539729 | MS.gene81685:CDS |
| CACGGTGGACACGGTGGAGG+TGG | 0.465334 | 5.1:-66538730 | MS.gene81685:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.469212 | 5.1:-66538943 | MS.gene81685:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.1:-66538970 | MS.gene81685:CDS |
| GGACACGGTGGTCACGGTGG+AGG | 0.486069 | 5.1:-66538946 | MS.gene81685:CDS |
| GGTGGTTACCACAATGGTGG+TGG | 0.494689 | 5.1:-66539045 | MS.gene81685:CDS |
| GGTGGAGGACACGGTGGTCA+CGG | 0.494972 | 5.1:-66538952 | MS.gene81685:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.1:-66538925 | MS.gene81685:CDS |
| CATGGTTGTAACTTCCTCCA+TGG | 0.504992 | 5.1:+66538806 | None:intergenic |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.1:-66538919 | MS.gene81685:CDS |
| GGTCACGGTGGACACGGTGG+AGG | 0.507552 | 5.1:-66538733 | MS.gene81685:CDS |
| GGTGGATACAATGGTGGAGG+TGG | 0.521371 | 5.1:-66538985 | MS.gene81685:CDS |
| AATAAGAGCCATAGCCAAGA+AGG | 0.525726 | 5.1:+66539721 | None:intergenic |
| GGTGGTGGTTACAATGGTGG+AGG | 0.528560 | 5.1:-66539027 | MS.gene81685:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.531004 | 5.1:-66539066 | MS.gene81685:CDS |
| GGAGGTGGTCACGGTGGACA+CGG | 0.533640 | 5.1:-66538739 | MS.gene81685:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.535349 | 5.1:-66538967 | MS.gene81685:CDS |
| AGTTATCACCACGGTGGAGG+TGG | 0.539894 | 5.1:-66538754 | MS.gene81685:CDS |
| GGTTACCACAATGGTGGTGG+TGG | 0.547395 | 5.1:-66539042 | MS.gene81685:CDS |
| GGTTACCACAACGGTGGCGG+TGG | 0.547786 | 5.1:-66539003 | MS.gene81685:CDS |
| GGACACGGTGGAGGTGGTCA+CGG | 0.548236 | 5.1:-66538724 | MS.gene81685:CDS |
| TTTCATCAGTGATGTCCGCT+AGG | 0.548466 | 5.1:-66539700 | MS.gene81685:CDS |
| GGTGGTTACCACAACGGTGG+CGG | 0.548738 | 5.1:-66539006 | MS.gene81685:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.1:-66539099 | MS.gene81685:CDS |
| GGCGGTGGATACAATGGTGG+AGG | 0.551699 | 5.1:-66538988 | MS.gene81685:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.554746 | 5.1:-66539063 | MS.gene81685:CDS |
| CACCACGGTGGAGGTGGTCA+CGG | 0.555739 | 5.1:-66538748 | MS.gene81685:CDS |
| TACAATGGTGGTGGAGGACA+CGG | 0.556001 | 5.1:-66538961 | MS.gene81685:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.1:-66538928 | MS.gene81685:CDS |
| TTCATCAGTGATGTCCGCTA+GGG | 0.560051 | 5.1:-66539699 | MS.gene81685:CDS |
| GGAGGTGGTTACAACGGTGG+TGG | 0.562839 | 5.1:-66539084 | MS.gene81685:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.1:-66538934 | MS.gene81685:CDS |
| GGTAGTTATCACCACGGTGG+AGG | 0.564481 | 5.1:-66538757 | MS.gene81685:CDS |
| AACGGTGGCGGTGGATACAA+TGG | 0.572921 | 5.1:-66538994 | MS.gene81685:CDS |
| TGTATCCACCGCCACCGTTG+TGG | 0.577751 | 5.1:+66538998 | None:intergenic |
| GGTGGTTATAACCACGGTGG+TGG | 0.581184 | 5.1:-66539153 | MS.gene81685:CDS |
| GGAAGTTACAACCATGGTGG+AGG | 0.585493 | 5.1:-66538799 | MS.gene81685:CDS |
| GGAGGTTACAACCATGGTGG+AGG | 0.585493 | 5.1:-66539102 | MS.gene81685:CDS |
| AATGGTGGTGGTGGTTACAA+TGG | 0.585769 | 5.1:-66539033 | MS.gene81685:CDS |
| AACCACGGTGGTGGTTACAA+TGG | 0.598930 | 5.1:-66539144 | MS.gene81685:CDS |
| AAATATGGAGGCTACAGCCA+TGG | 0.608534 | 5.1:-66539174 | MS.gene81685:CDS |
| CACGGTGGTGGTTACAATGG+TGG | 0.608752 | 5.1:-66539141 | MS.gene81685:CDS |
| GGTAGTTACAACCACGGAGG+AGG | 0.611011 | 5.1:-66538778 | MS.gene81685:CDS |
| AATGGTGGAGGTGGTTACAA+TGG | 0.617120 | 5.1:-66538976 | MS.gene81685:CDS |
| AACGGTGGTGGTTACAACCA+CGG | 0.623888 | 5.1:-66539072 | MS.gene81685:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.625782 | 5.1:-66539138 | MS.gene81685:CDS |
| GTAAATGATGCCAAATATGG+AGG | 0.627438 | 5.1:-66539186 | MS.gene81685:CDS |
| CGTTGTAACCACCTCCACCA+TGG | 0.637472 | 5.1:+66539091 | None:intergenic |
| AATGATGCCAAATATGGTGG+TGG | 0.637670 | 5.1:-66538838 | MS.gene81685:CDS |
| TGTAACCACCACCACCATTG+TGG | 0.638615 | 5.1:+66539037 | None:intergenic |
| GGTGGTGGTGGTTACAATGG+TGG | 0.639443 | 5.1:-66539030 | MS.gene81685:CDS |
| GGAGGTCACGGTGGTCATGG+CGG | 0.640286 | 5.1:-66538907 | MS.gene81685:CDS |
| CACAGTGGAGGTTACAACCA+TGG | 0.645621 | 5.1:-66539108 | MS.gene81685:CDS |
| CATGGTGGAGGTGGTTACAA+CGG | 0.645837 | 5.1:-66539090 | MS.gene81685:CDS |
| GGTGGAGGTGGTTACCACAA+TGG | 0.652457 | 5.1:-66539051 | MS.gene81685:CDS |
| GGTGGTCACGGTGGACACGG+TGG | 0.653298 | 5.1:-66538736 | MS.gene81685:CDS |
| GGAGGACACGGTGGTCACGG+TGG | 0.653298 | 5.1:-66538949 | MS.gene81685:CDS |
| CACGGTGGAGGTGGTCACGG+TGG | 0.658662 | 5.1:-66538745 | MS.gene81685:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.666886 | 5.1:-66538973 | MS.gene81685:CDS |
| CACCGTGGTTATAACCACCA+TGG | 0.667967 | 5.1:+66539157 | None:intergenic |
| TATGGAGGCTACAGCCATGG+TGG | 0.674682 | 5.1:-66539171 | MS.gene81685:CDS |
| GGTGGAGGTGGTTACCACAA+CGG | 0.678715 | 5.1:-66539012 | MS.gene81685:CDS |
| GGTTGTAACTACCTCCACCA+TGG | 0.680661 | 5.1:+66538788 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.1:-66538931 | MS.gene81685:CDS |
| GTCTGTTGCCGTGCAAACTG+AGG | 0.682797 | 5.1:-66538878 | MS.gene81685:CDS |
| GGTGGTGGTAGTTACAACCA+TGG | 0.683746 | 5.1:-66538823 | MS.gene81685:CDS |
| GGAGGTTATAACCACAGTGG+AGG | 0.687487 | 5.1:-66539120 | MS.gene81685:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.688584 | 5.1:+66538746 | None:intergenic |
| ATGAATGATGCCAAATATGG+TGG | 0.691119 | 5.1:-66538841 | MS.gene81685:CDS |
| AGCCATGGTGGTTATAACCA+CGG | 0.691157 | 5.1:-66539159 | MS.gene81685:CDS |
| TCACGGTGCCGACCAAACTG+AGG | 0.694971 | 5.1:-66538707 | MS.gene81685:CDS |
| GGAGGTGGTTACCACAATGG+TGG | 0.699554 | 5.1:-66539048 | MS.gene81685:CDS |
| GGTGATAACTACCTCCTCCG+TGG | 0.701736 | 5.1:+66538767 | None:intergenic |
| GGAGGAAGTTACAACCATGG+TGG | 0.708611 | 5.1:-66538802 | MS.gene81685:CDS |
| GGTGGAGGTGGTTACAACGG+TGG | 0.713237 | 5.1:-66539087 | MS.gene81685:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.1:-66538916 | MS.gene81685:CDS |
| GGTGGCGGTGGATACAATGG+TGG | 0.717019 | 5.1:-66538991 | MS.gene81685:CDS |
| TGTGGTAACCACCTCCACCG+TGG | 0.717584 | 5.1:+66539055 | None:intergenic |
| CATGGAGGAAGTTACAACCA+TGG | 0.719430 | 5.1:-66538805 | MS.gene81685:CDS |
| GGAGGTGGTTACCACAACGG+TGG | 0.721174 | 5.1:-66539009 | MS.gene81685:CDS |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5.1:+66539685 | None:intergenic |
| AATGGTGGTGGAGGACACGG+TGG | 0.730218 | 5.1:-66538958 | MS.gene81685:CDS |
| GGTGGAGGTAGTTACAACCA+CGG | 0.730738 | 5.1:-66538784 | MS.gene81685:CDS |
| AGTGGAGGTTACAACCATGG+TGG | 0.735986 | 5.1:-66539105 | MS.gene81685:CDS |
| CACCATTGTAACCACCACCG+TGG | 0.740555 | 5.1:+66539142 | None:intergenic |
| GGTGGAGGTTATAACCACAG+TGG | 0.753566 | 5.1:-66539123 | MS.gene81685:CDS |
| CATGGTTGTAACCTCCACTG+TGG | 0.755925 | 5.1:+66539109 | None:intergenic |
| GGTGGTAGTTACAACCATGG+AGG | 0.757972 | 5.1:-66538820 | MS.gene81685:CDS |
| GGAGGTAGTTATCACCACGG+TGG | 0.769330 | 5.1:-66538760 | MS.gene81685:CDS |
| GGAGGAGGTAGTTATCACCA+CGG | 0.770033 | 5.1:-66538763 | MS.gene81685:CDS |
| CATGGTGGTTATAACCACGG+TGG | 0.785326 | 5.1:-66539156 | MS.gene81685:CDS |
| GGTGGTGGTTACAACCACGG+TGG | 0.791258 | 5.1:-66539069 | MS.gene81685:CDS |
| GGAGGTAGTTACAACCACGG+AGG | 0.812225 | 5.1:-66538781 | MS.gene81685:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTATATAACATTG+AGG | + | chr5.1:66538945-66538964 | None:intergenic | 15.0% |
| !! | ATATAATCCTTCAAAAAAGT+AGG | + | chr5.1:66538872-66538891 | None:intergenic | 20.0% |
| !!! | ATTATTTCCTACTTTTTTGA+AGG | - | chr5.1:66538862-66538881 | MS.gene81685:CDS | 20.0% |
| ! | CATATATATTGTGTTTGTAG+AGG | - | chr5.1:66539213-66539232 | MS.gene81685:intron | 25.0% |
| AAATCATACCTGTGTAATGT+TGG | + | chr5.1:66539084-66539103 | None:intergenic | 30.0% | |
| AATCATACCTGTGTAATGTT+GGG | + | chr5.1:66539083-66539102 | None:intergenic | 30.0% | |
| GAAATGAATGATGCCAAATA+TGG | - | chr5.1:66539598-66539617 | MS.gene81685:intron | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.1:66539253-66539272 | MS.gene81685:intron | 30.0% | |
| TTCATTAAGAAGTTGTTGAG+TGG | - | chr5.1:66539044-66539063 | MS.gene81685:CDS | 30.0% | |
| ! | AAATTTTCCCAACATTACAC+AGG | - | chr5.1:66539073-66539092 | MS.gene81685:CDS | 30.0% |
| AATTCTCATGCTAACCTTCT+TGG | - | chr5.1:66538707-66538726 | MS.gene81685:CDS | 35.0% | |
| ATGAATGATGCCAAATATGG+TGG | - | chr5.1:66539601-66539620 | MS.gene81685:intron | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | - | chr5.1:66539256-66539275 | MS.gene81685:intron | 35.0% | |
| !! | TTTGAGTTTTGTCCTCAGTT+TGG | + | chr5.1:66539750-66539769 | None:intergenic | 35.0% |
| AACTTCCACCGATGCTAAAA+AGG | - | chr5.1:66538776-66538795 | MS.gene81685:CDS | 40.0% | |
| AATAAGAGCCATAGCCAAGA+AGG | + | chr5.1:66538724-66538743 | None:intergenic | 40.0% | |
| AATGATGCCAAATATGGTGG+TGG | - | chr5.1:66539604-66539623 | MS.gene81685:intron | 40.0% | |
| ACTTCCACCGATGCTAAAAA+GGG | - | chr5.1:66538777-66538796 | MS.gene81685:CDS | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | + | chr5.1:66538760-66538779 | None:intergenic | 40.0% | |
| GTAACTACCACCACCATATT+TGG | + | chr5.1:66539614-66539633 | None:intergenic | 40.0% | |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.1:66539575-66539594 | None:intergenic | 40.0% |
| !! | AGTTTTGTCCTCAGTTTGGT+CGG | + | chr5.1:66539746-66539765 | None:intergenic | 40.0% |
| !! | TAGCTCACCCTTTTTAGCAT+CGG | + | chr5.1:66538787-66538806 | None:intergenic | 40.0% |
| AAATATGGAGGCTACAGCCA+TGG | - | chr5.1:66539268-66539287 | MS.gene81685:intron | 45.0% | |
| AGCCATGGTGGTTATAACCA+CGG | - | chr5.1:66539283-66539302 | MS.gene81685:intron | 45.0% | |
| ATGGCTGTAGCCTCCATATT+TGG | + | chr5.1:66539269-66539288 | None:intergenic | 45.0% | |
| CATGCTAACCTTCTTGGCTA+TGG | - | chr5.1:66538713-66538732 | MS.gene81685:CDS | 45.0% | |
| CATGGAGGAAGTTACAACCA+TGG | - | chr5.1:66539637-66539656 | MS.gene81685:intron | 45.0% | |
| CATGGTTGTAACTTCCTCCA+TGG | + | chr5.1:66539639-66539658 | None:intergenic | 45.0% | |
| GACTTCTTAACCAGTGTCCT+AGG | - | chr5.1:66539128-66539147 | MS.gene81685:CDS | 45.0% | |
| TCATGTTAACCGATGCTCCT+AGG | + | chr5.1:66539148-66539167 | None:intergenic | 45.0% | |
| TTCATCAGTGATGTCCGCTA+GGG | - | chr5.1:66538743-66538762 | MS.gene81685:CDS | 45.0% | |
| TTTCATCAGTGATGTCCGCT+AGG | - | chr5.1:66538742-66538761 | MS.gene81685:CDS | 45.0% | |
| ! | AATGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66539466-66539485 | MS.gene81685:intron | 45.0% |
| !! | AATGGTGGTGGTGGTTACAA+TGG | - | chr5.1:66539409-66539428 | MS.gene81685:intron | 45.0% |
| !! | ATATAGATATATATTTAAAA+AGG | - | chr5.1:66539174-66539193 | MS.gene81685:CDS | 5.0% |
| !! | TAAATATATATCTATATATA+GGG | + | chr5.1:66539171-66539190 | None:intergenic | 5.0% |
| !! | TTAAATATATATCTATATAT+AGG | + | chr5.1:66539172-66539191 | None:intergenic | 5.0% |
| AGTGGAGGTTACAACCATGG+TGG | - | chr5.1:66539337-66539356 | MS.gene81685:intron | 50.0% | |
| CACAGTGGAGGTTACAACCA+TGG | - | chr5.1:66539334-66539353 | MS.gene81685:intron | 50.0% | |
| CACCGTGGTTATAACCACCA+TGG | + | chr5.1:66539288-66539307 | None:intergenic | 50.0% | |
| CATGGTGGTTATAACCACGG+TGG | - | chr5.1:66539286-66539305 | MS.gene81685:intron | 50.0% | |
| CATGGTTGTAACCTCCACTG+TGG | + | chr5.1:66539336-66539355 | None:intergenic | 50.0% | |
| GGAAGTTACAACCATGGTGG+AGG | - | chr5.1:66539643-66539662 | MS.gene81685:intron | 50.0% | |
| GGAGGAAGTTACAACCATGG+TGG | - | chr5.1:66539640-66539659 | MS.gene81685:intron | 50.0% | |
| GGAGGAGGTAGTTATCACCA+CGG | - | chr5.1:66539679-66539698 | MS.gene81685:CDS | 50.0% | |
| GGAGGTTATAACCACAGTGG+AGG | - | chr5.1:66539322-66539341 | MS.gene81685:intron | 50.0% | |
| GGTGGAGGTAGTTACAACCA+CGG | - | chr5.1:66539658-66539677 | MS.gene81685:intron | 50.0% | |
| GGTGGAGGTTATAACCACAG+TGG | - | chr5.1:66539319-66539338 | MS.gene81685:intron | 50.0% | |
| GGTGGTAGTTACAACCATGG+AGG | - | chr5.1:66539622-66539641 | MS.gene81685:intron | 50.0% | |
| GGTTGTAACTACCTCCACCA+TGG | + | chr5.1:66539657-66539676 | None:intergenic | 50.0% | |
| TGTAACCACCACCACCATTG+TGG | + | chr5.1:66539408-66539427 | None:intergenic | 50.0% | |
| ! | AACCACGGTGGTGGTTACAA+TGG | - | chr5.1:66539298-66539317 | MS.gene81685:intron | 50.0% |
| ! | AACCAGTGTCCTAGGAGCAT+CGG | - | chr5.1:66539136-66539155 | MS.gene81685:CDS | 50.0% |
| ! | AACGGTGGTGGTTACAACCA+CGG | - | chr5.1:66539370-66539389 | MS.gene81685:intron | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+CGG | - | chr5.1:66539352-66539371 | MS.gene81685:intron | 50.0% |
| ! | GGTGGTGGTAGTTACAACCA+TGG | - | chr5.1:66539619-66539638 | MS.gene81685:intron | 50.0% |
| !! | CTCACCCTTTTTAGCATCGG+TGG | + | chr5.1:66538784-66538803 | None:intergenic | 50.0% |
| !! | TACAATGGTGGTGGAGGACA+CGG | - | chr5.1:66539481-66539500 | MS.gene81685:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.1:66539523-66539542 | MS.gene81685:intron | 50.0% |
| AACCGATGCTCCTAGGACAC+TGG | + | chr5.1:66539141-66539160 | None:intergenic | 55.0% | |
| AGTTATCACCACGGTGGAGG+TGG | - | chr5.1:66539688-66539707 | MS.gene81685:CDS | 55.0% | |
| CACCATTGTAACCACCACCG+TGG | + | chr5.1:66539303-66539322 | None:intergenic | 55.0% | |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66539508-66539527 | MS.gene81685:intron | 55.0% | |
| CGTTGTAACCACCTCCACCA+TGG | + | chr5.1:66539354-66539373 | None:intergenic | 55.0% | |
| GGAGGTAGTTACAACCACGG+AGG | - | chr5.1:66539661-66539680 | MS.gene81685:intron | 55.0% | |
| GGAGGTAGTTATCACCACGG+TGG | - | chr5.1:66539682-66539701 | MS.gene81685:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.1:66539472-66539491 | MS.gene81685:intron | 55.0% | |
| GGAGGTGGTTACCACAATGG+TGG | - | chr5.1:66539394-66539413 | MS.gene81685:intron | 55.0% | |
| GGAGGTTACAACCATGGTGG+AGG | - | chr5.1:66539340-66539359 | MS.gene81685:intron | 55.0% | |
| GGTAGTTACAACCACGGAGG+AGG | - | chr5.1:66539664-66539683 | MS.gene81685:intron | 55.0% | |
| GGTAGTTATCACCACGGTGG+AGG | - | chr5.1:66539685-66539704 | MS.gene81685:CDS | 55.0% | |
| GGTGATAACTACCTCCTCCG+TGG | + | chr5.1:66539678-66539697 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.1:66539469-66539488 | MS.gene81685:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+CGG | - | chr5.1:66539391-66539410 | MS.gene81685:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+TGG | - | chr5.1:66539391-66539410 | MS.gene81685:intron | 55.0% | |
| GGTGGTTACCACAATGGTGG+TGG | - | chr5.1:66539397-66539416 | MS.gene81685:intron | 55.0% | |
| GGTGGTTATAACCACGGTGG+TGG | - | chr5.1:66539289-66539308 | MS.gene81685:intron | 55.0% | |
| GTCTGTTGCCGTGCAAACTG+AGG | - | chr5.1:66539564-66539583 | MS.gene81685:intron | 55.0% | |
| TATGGAGGCTACAGCCATGG+TGG | - | chr5.1:66539271-66539290 | MS.gene81685:intron | 55.0% | |
| ! | AACGGTGGCGGTGGATACAA+TGG | - | chr5.1:66539448-66539467 | MS.gene81685:intron | 55.0% |
| ! | CACGGTGGTGGTTACAATGG+TGG | - | chr5.1:66539301-66539320 | MS.gene81685:intron | 55.0% |
| ! | GGTGGATACAATGGTGGAGG+TGG | - | chr5.1:66539457-66539476 | MS.gene81685:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.1:66539304-66539323 | MS.gene81685:intron | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5.1:66539307-66539326 | MS.gene81685:intron | 55.0% |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5.1:66539343-66539362 | MS.gene81685:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5.1:66539412-66539431 | MS.gene81685:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.1:66539475-66539494 | MS.gene81685:intron | 55.0% |
| !! | GGTTACCACAATGGTGGTGG+TGG | - | chr5.1:66539400-66539419 | MS.gene81685:intron | 55.0% |
| GGAGGTGGTTACAACGGTGG+TGG | - | chr5.1:66539358-66539377 | MS.gene81685:intron | 60.0% | |
| GGAGGTGGTTACCACAACGG+TGG | - | chr5.1:66539433-66539452 | MS.gene81685:intron | 60.0% | |
| GGCGGTGGATACAATGGTGG+AGG | - | chr5.1:66539454-66539473 | MS.gene81685:intron | 60.0% | |
| GGTGGAGGTGGTTACAACGG+TGG | - | chr5.1:66539355-66539374 | MS.gene81685:intron | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.1:66539376-66539395 | MS.gene81685:intron | 60.0% | |
| GGTGGTTACCACAACGGTGG+CGG | - | chr5.1:66539436-66539455 | MS.gene81685:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.1:66539379-66539398 | MS.gene81685:intron | 60.0% | |
| TGTATCCACCGCCACCGTTG+TGG | + | chr5.1:66539447-66539466 | None:intergenic | 60.0% | |
| TGTGGTAACCACCTCCACCG+TGG | + | chr5.1:66539390-66539409 | None:intergenic | 60.0% | |
| ! | GGTGGCGGTGGATACAATGG+TGG | - | chr5.1:66539451-66539470 | MS.gene81685:intron | 60.0% |
| ! | GGTGGTGGTTACAACCACGG+TGG | - | chr5.1:66539373-66539392 | MS.gene81685:intron | 60.0% |
| !! | AATGGTGGTGGAGGACACGG+TGG | - | chr5.1:66539484-66539503 | MS.gene81685:intron | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.1:66539526-66539545 | MS.gene81685:intron | 60.0% |
| !! | TCACGGTGCCGACCAAACTG+AGG | - | chr5.1:66539735-66539754 | MS.gene81685:CDS | 60.0% |
| CACCACGGTGGAGGTGGTCA+CGG | - | chr5.1:66539694-66539713 | MS.gene81685:CDS | 65.0% | |
| GGACACGGTGGAGGTGGTCA+CGG | - | chr5.1:66539718-66539737 | MS.gene81685:CDS | 65.0% | |
| GGAGGTCACGGTGGTCATGG+CGG | - | chr5.1:66539535-66539554 | MS.gene81685:intron | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | - | chr5.1:66539703-66539722 | MS.gene81685:CDS | 65.0% | |
| GGTGGAGGACACGGTGGTCA+CGG | - | chr5.1:66539490-66539509 | MS.gene81685:intron | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+TGG | - | chr5.1:66539532-66539551 | MS.gene81685:intron | 65.0% | |
| ! | GGTTACCACAACGGTGGCGG+TGG | - | chr5.1:66539439-66539458 | MS.gene81685:intron | 65.0% |
| CACCGTGACCACCTCCACCG+TGG | + | chr5.1:66539699-66539718 | None:intergenic | 70.0% | |
| CACGGTGGACACGGTGGAGG+TGG | - | chr5.1:66539712-66539731 | MS.gene81685:CDS | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | - | chr5.1:66539697-66539716 | MS.gene81685:CDS | 70.0% | |
| CACGGTGGTCACGGTGGAGG+TGG | - | chr5.1:66539499-66539518 | MS.gene81685:intron | 70.0% | |
| GGACACGGTGGTCACGGTGG+AGG | - | chr5.1:66539496-66539515 | MS.gene81685:intron | 70.0% | |
| GGAGGACACGGTGGTCACGG+TGG | - | chr5.1:66539493-66539512 | MS.gene81685:intron | 70.0% | |
| GGTCACGGTGGACACGGTGG+AGG | - | chr5.1:66539709-66539728 | MS.gene81685:CDS | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | - | chr5.1:66539706-66539725 | MS.gene81685:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66538690 | 66539774 | 66538690 | ID=MS.gene81685 |
| chr5.1 | mRNA | 66538690 | 66539774 | 66538690 | ID=MS.gene81685.t1;Parent=MS.gene81685 |
| chr5.1 | exon | 66539666 | 66539774 | 66539666 | ID=MS.gene81685.t1.exon1;Parent=MS.gene81685.t1 |
| chr5.1 | CDS | 66539666 | 66539774 | 66539666 | ID=cds.MS.gene81685.t1;Parent=MS.gene81685.t1 |
| chr5.1 | exon | 66538690 | 66539231 | 66538690 | ID=MS.gene81685.t1.exon2;Parent=MS.gene81685.t1 |
| chr5.1 | CDS | 66538690 | 66539231 | 66538690 | ID=cds.MS.gene81685.t1;Parent=MS.gene81685.t1 |
| Gene Sequence |
| Protein sequence |
