Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83154.t1 | XP_003607789.2 | 60 | 892 | 51 | 9 | 32 | 628 | 31 | 911 | 8.90E-235 | 823.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83154.t1 | P53535 | 55.4 | 719 | 143 | 9 | 74 | 628 | 200 | 904 | 6.0e-179 | 629.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83154.t1 | G7JHG9 | 60.0 | 892 | 51 | 9 | 32 | 628 | 31 | 911 | 6.4e-235 | 823.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene83154 | 0.846507 | 2.08E-59 | -1.69E-46 |
| MS.gene04933 | MS.gene83154 | 0.81216 | 4.88E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene83154 | 0.846757 | 1.78E-59 | -1.69E-46 |
| MS.gene050227 | MS.gene83154 | 0.849593 | 2.93E-60 | -1.69E-46 |
| MS.gene050228 | MS.gene83154 | 0.854656 | 1.06E-61 | -1.69E-46 |
| MS.gene050330 | MS.gene83154 | -0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene83154 | 0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene83154 | -0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene83154 | 0.856301 | 3.53E-62 | -1.69E-46 |
| MS.gene050787 | MS.gene83154 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene83154 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene83154 | 0.802881 | 4.54E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene83154 | 0.803249 | 3.82E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene83154 | 0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene83154 | 0.842191 | 3.01E-58 | -1.69E-46 |
| MS.gene052302 | MS.gene83154 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene83154 | -0.801098 | 1.06E-48 | -1.69E-46 |
| MS.gene052376 | MS.gene83154 | 0.831708 | 1.43E-55 | -1.69E-46 |
| MS.gene052600 | MS.gene83154 | 0.82165 | 3.61E-53 | -1.69E-46 |
| MS.gene053054 | MS.gene83154 | -0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene83154 | 0.833572 | 4.94E-56 | -1.69E-46 |
| MS.gene054468 | MS.gene83154 | 0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene83154 | 0.822278 | 2.58E-53 | -1.69E-46 |
| MS.gene054942 | MS.gene83154 | 0.869518 | 2.92E-66 | -1.69E-46 |
| MS.gene054983 | MS.gene83154 | 0.813782 | 2.15E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene83154 | 0.804656 | 1.95E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene83154 | 0.826543 | 2.56E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene83154 | 0.804351 | 2.25E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene83154 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene83154 | 0.807636 | 4.59E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene83154 | -0.843511 | 1.34E-58 | -1.69E-46 |
| MS.gene061114 | MS.gene83154 | -0.812987 | 3.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83154.t1 | MTR_4g082950 | 61.944 | 720 | 99 | 15 | 74 | 629 | 204 | 912 | 0.0 | 734 |
| MS.gene83154.t1 | MTR_4g082950 | 82.609 | 46 | 8 | 0 | 32 | 77 | 31 | 76 | 1.16e-14 | 78.2 |
| MS.gene83154.t1 | MTR_0288s0040 | 55.509 | 481 | 119 | 11 | 227 | 631 | 402 | 863 | 2.39e-144 | 443 |
| MS.gene83154.t1 | MTR_0288s0040 | 62.112 | 161 | 43 | 2 | 74 | 227 | 180 | 329 | 2.62e-55 | 203 |
| MS.gene83154.t1 | MTR_3g462340 | 47.685 | 432 | 162 | 9 | 227 | 627 | 371 | 769 | 1.34e-107 | 345 |
| MS.gene83154.t1 | MTR_3g462340 | 52.448 | 143 | 57 | 2 | 74 | 216 | 149 | 280 | 1.19e-39 | 156 |
| MS.gene83154.t1 | MTR_2g014460 | 34.472 | 644 | 285 | 20 | 74 | 617 | 305 | 911 | 9.28e-82 | 279 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83154.t1 | AT3G29320 | 52.535 | 493 | 113 | 8 | 227 | 631 | 436 | 895 | 4.35e-141 | 436 |
| MS.gene83154.t1 | AT3G29320 | 63.636 | 143 | 41 | 2 | 74 | 216 | 214 | 345 | 5.96e-53 | 197 |
| MS.gene83154.t1 | AT3G46970 | 48.268 | 433 | 158 | 10 | 227 | 627 | 372 | 770 | 2.59e-107 | 344 |
| MS.gene83154.t1 | AT3G46970 | 49.306 | 144 | 62 | 2 | 74 | 217 | 148 | 280 | 4.25e-37 | 149 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTTCTAATTGCTCTTC+TGG | 0.206585 | 4.2:+26673670 | None:intergenic |
| TTCTATGGAGAAGTTATTTC+AGG | 0.216727 | 4.2:-26671265 | MS.gene83154:CDS |
| CGACGAATTGATGGGATCTT+TGG | 0.243497 | 4.2:-26667164 | MS.gene83154:CDS |
| GATTTGAAGGCTTTCAATAC+TGG | 0.245062 | 4.2:-26671106 | MS.gene83154:CDS |
| TGGCTTGAGGTCTGCTTATA+TGG | 0.248206 | 4.2:-26671493 | MS.gene83154:CDS |
| TCTTATCCAGTTAGATTCTA+TGG | 0.254682 | 4.2:-26671280 | MS.gene83154:CDS |
| AATTACCCTGCATGGGGATA+TGG | 0.274456 | 4.2:-26671586 | MS.gene83154:CDS |
| GGACCACAATCGCAAGTTTA+TGG | 0.317000 | 4.2:+26671153 | None:intergenic |
| CGAACCATCATTGGCAGGTT+TGG | 0.317570 | 4.2:+26669774 | None:intergenic |
| CATGAAGTTGTTTCTGAGTC+TGG | 0.322339 | 4.2:-26670095 | MS.gene83154:CDS |
| AACTAAAGAATTTGATTTGA+AGG | 0.326464 | 4.2:-26671119 | MS.gene83154:CDS |
| GACTGGAGGAGAAAGTATTT+TGG | 0.328200 | 4.2:-26671221 | MS.gene83154:CDS |
| CCCATTCCAAATCAAACATT+TGG | 0.341810 | 4.2:-26673743 | MS.gene83154:CDS |
| ACGCTGCCAAATGTTTGATT+TGG | 0.361239 | 4.2:+26673737 | None:intergenic |
| TTCTTTAGTTGAAACTTTAG+TGG | 0.365317 | 4.2:+26671132 | None:intergenic |
| CAGTTCCGCTGCTTTGTCGC+TGG | 0.365462 | 4.2:+26673631 | None:intergenic |
| CAAGGACTTCCCTAGCTACT+TGG | 0.367893 | 4.2:-26667099 | MS.gene83154:CDS |
| CAGAGTGGATAGAATCAAAA+AGG | 0.368398 | 4.2:-26669116 | MS.gene83154:CDS |
| CCTTTACTTCTTCAAACCTT+GGG | 0.375831 | 4.2:+26667224 | None:intergenic |
| ATGAATGGATGTGTGCAAAT+TGG | 0.376874 | 4.2:-26667600 | MS.gene83154:CDS |
| ACTAGAGAATATTGAGTTGC+CGG | 0.377955 | 4.2:-26670024 | MS.gene83154:CDS |
| AGGAGGAAGTTGCTGAAAAC+TGG | 0.381174 | 4.2:-26671513 | MS.gene83154:CDS |
| ACTTCTCCATAGAATCTAAC+TGG | 0.381745 | 4.2:+26671274 | None:intergenic |
| CTGAAGAAATTGCAGGGTTA+AGG | 0.382529 | 4.2:-26667503 | MS.gene83154:CDS |
| GAATATTGAGTTGCCGGATT+CGG | 0.385197 | 4.2:-26670018 | MS.gene83154:CDS |
| GCAGCGTACAAAACAACATT+TGG | 0.388730 | 4.2:-26673721 | MS.gene83154:CDS |
| TGTTGATGATAATGATATAA+AGG | 0.401976 | 4.2:-26669940 | MS.gene83154:CDS |
| CATCAATTCGTCGTAGTTGT+AGG | 0.404593 | 4.2:+26667174 | None:intergenic |
| TTCTTGCTTTCTAGACTCCT+TGG | 0.404594 | 4.2:-26671617 | MS.gene83154:intron |
| CCAAATGTTTGATTTGGAAT+GGG | 0.408450 | 4.2:+26673743 | None:intergenic |
| TTTATCTATACCTAATGTGC+TGG | 0.410380 | 4.2:+26667755 | None:intergenic |
| CGTGCTGATTATTTCCTTGT+TGG | 0.415896 | 4.2:-26667122 | MS.gene83154:CDS |
| CTCCATTTCTCTAGTGCCTC+TGG | 0.422856 | 4.2:+26670307 | None:intergenic |
| TTCAAAAGATCTCCAATCTC+TGG | 0.423187 | 4.2:+26668192 | None:intergenic |
| GTGAATTGTCCCAGCACATT+AGG | 0.424344 | 4.2:-26667765 | MS.gene83154:intron |
| ACTTCTTCAAACCTTGGGTC+TGG | 0.424710 | 4.2:+26667229 | None:intergenic |
| GTCCATTGCTTAGCTCCATC+TGG | 0.426769 | 4.2:+26671241 | None:intergenic |
| TCAACATCAATTTCCTCAAC+AGG | 0.426786 | 4.2:+26669957 | None:intergenic |
| CTTCATGACAGCGTATGCTT+TGG | 0.427119 | 4.2:+26671075 | None:intergenic |
| GCCTTTACTTCTTCAAACCT+TGG | 0.427852 | 4.2:+26667223 | None:intergenic |
| CTACAACTACGACGAATTGA+TGG | 0.429462 | 4.2:-26667173 | MS.gene83154:CDS |
| ATAAACTCAACCACCGAATC+CGG | 0.430194 | 4.2:+26670005 | None:intergenic |
| TACCAGAGGCACTAGAGAAA+TGG | 0.435864 | 4.2:-26670309 | MS.gene83154:CDS |
| GTTGAAATAAGAGAAGAAGT+TGG | 0.438273 | 4.2:-26667558 | MS.gene83154:CDS |
| GTTAATCACGATCCAGAGAT+TGG | 0.440645 | 4.2:-26668204 | MS.gene83154:CDS |
| ATTTGAAGGCTTTCAATACT+GGG | 0.449329 | 4.2:-26671105 | MS.gene83154:CDS |
| GCACGAGCTGAAGAAATTGC+AGG | 0.449587 | 4.2:-26667510 | MS.gene83154:CDS |
| ATGGAGTTTGACTCTTCTGC+AGG | 0.451498 | 4.2:-26670290 | MS.gene83154:CDS |
| AACATGAAATTTGCAATGAA+TGG | 0.455487 | 4.2:-26667615 | MS.gene83154:CDS |
| ACGTATAACGAAGGACGGTC+AGG | 0.458652 | 4.2:-26671533 | MS.gene83154:CDS |
| GCAACACTAACATTGTAATC+AGG | 0.461165 | 4.2:+26667808 | None:intergenic |
| ATGCCTTGTCAACTTCCTCT+TGG | 0.467018 | 4.2:+26667072 | None:intergenic |
| CTACCAGTTTGCAGATAATG+AGG | 0.467112 | 4.2:-26669148 | MS.gene83154:CDS |
| TCATTTATCAAAGAGAAAAC+AGG | 0.468618 | 4.2:-26669073 | MS.gene83154:intron |
| GATCCTCATTATCTGCAAAC+TGG | 0.471034 | 4.2:+26669145 | None:intergenic |
| GCCAAATGTTTGATTTGGAA+TGG | 0.475175 | 4.2:+26673742 | None:intergenic |
| TTAGCCATGCGAACCATCAT+TGG | 0.477716 | 4.2:+26669765 | None:intergenic |
| CATCGTTCTCTGAATTTCCC+AGG | 0.478746 | 4.2:+26671305 | None:intergenic |
| TACAGCTGGGATGGAGGCAG+TGG | 0.481450 | 4.2:-26667645 | MS.gene83154:intron |
| GTTGCTGAAATGCTAATTCC+TGG | 0.484765 | 4.2:-26667790 | MS.gene83154:CDS |
| TGATTATTTCCTTGTTGGCA+AGG | 0.485154 | 4.2:-26667117 | MS.gene83154:CDS |
| GCTTATGATGTTCCAATACC+TGG | 0.487169 | 4.2:-26671193 | MS.gene83154:CDS |
| CCATGCGAACCATCATTGGC+AGG | 0.495713 | 4.2:+26669769 | None:intergenic |
| GTAAAATTCATCACAGATGT+AGG | 0.497209 | 4.2:-26668234 | MS.gene83154:CDS |
| TGATCCAAACCTGCCAATGA+TGG | 0.501005 | 4.2:-26669778 | MS.gene83154:CDS |
| ACGGCAGTTACTGAATATCA+TGG | 0.501069 | 4.2:-26668380 | MS.gene83154:CDS |
| CAACCAACCACTGTCACAAA+AGG | 0.501648 | 4.2:-26674058 | MS.gene83154:CDS |
| TGCTGGGACAATTCACTGCC+AGG | 0.501865 | 4.2:+26667772 | None:intergenic |
| CCCAAGGTTTGAAGAAGTAA+AGG | 0.502177 | 4.2:-26667224 | MS.gene83154:CDS |
| GAAAGAAAGAGCAGAAGGAA+AGG | 0.502282 | 4.2:-26667481 | MS.gene83154:intron |
| GAACTGAAAGAACGACTCAT+TGG | 0.504413 | 4.2:-26673614 | MS.gene83154:CDS |
| ATGGCTAACCTATGTGTTGT+TGG | 0.505350 | 4.2:-26669750 | MS.gene83154:CDS |
| TCTTGGCACTCCAAGTAGCT+AGG | 0.505786 | 4.2:+26667089 | None:intergenic |
| GGGGATATGGACTTAGATAC+AGG | 0.507764 | 4.2:-26671573 | MS.gene83154:CDS |
| TGCAAATTGGAACTCTCGAT+GGG | 0.513093 | 4.2:-26667587 | MS.gene83154:CDS |
| AACACTGAATTACCCTGCAT+GGG | 0.518781 | 4.2:-26671593 | MS.gene83154:CDS |
| ATTTATAGATGGGAAATCCC+TGG | 0.520518 | 4.2:-26671323 | MS.gene83154:intron |
| TCTATGGAGAAGTTATTTCA+GGG | 0.524340 | 4.2:-26671264 | MS.gene83154:CDS |
| CAACACTGAATTACCCTGCA+TGG | 0.525876 | 4.2:-26671594 | MS.gene83154:CDS |
| ATGAAGTTGTTTCTGAGTCT+GGG | 0.528015 | 4.2:-26670094 | MS.gene83154:CDS |
| TAATGGCTCTTCTGTTAGAA+CGG | 0.530301 | 4.2:-26670356 | MS.gene83154:CDS |
| AGCGTATTCATGAATACAAA+CGG | 0.531740 | 4.2:-26668399 | MS.gene83154:CDS |
| TGTGTTTAGTACAGCTGGGA+TGG | 0.537168 | 4.2:-26667654 | MS.gene83154:intron |
| TATTGAGTTGCCGGATTCGG+TGG | 0.537392 | 4.2:-26670015 | MS.gene83154:CDS |
| GCTAACCTATGTGTTGTTGG+TGG | 0.537986 | 4.2:-26669747 | MS.gene83154:CDS |
| CCACCATAAACTTGCGATTG+TGG | 0.538883 | 4.2:-26671156 | MS.gene83154:CDS |
| GAATTGATGGGATCTTTGGA+AGG | 0.539315 | 4.2:-26667160 | MS.gene83154:CDS |
| CTAAGTCCATATCCCCATGC+AGG | 0.541539 | 4.2:+26671580 | None:intergenic |
| TTAAGGAAAGAAAGAGCAGA+AGG | 0.545172 | 4.2:-26667486 | MS.gene83154:CDS |
| AATTTCCTCAACAGGATCAT+CGG | 0.550548 | 4.2:+26669965 | None:intergenic |
| ATTTGGAATGGGGAATGTAA+AGG | 0.550787 | 4.2:+26673754 | None:intergenic |
| TGCAGTTTGTACCAGACCCA+AGG | 0.553369 | 4.2:-26667240 | MS.gene83154:intron |
| GATGGAGCTAAGCAATGGAC+TGG | 0.553513 | 4.2:-26671238 | MS.gene83154:CDS |
| GAAGTTATTTCAGGGCCAGA+TGG | 0.555318 | 4.2:-26671256 | MS.gene83154:CDS |
| GTAAAGGCATATGTTAGAAG+TGG | 0.555712 | 4.2:-26667208 | MS.gene83154:CDS |
| CTTGGCACTCCAAGTAGCTA+GGG | 0.557235 | 4.2:+26667090 | None:intergenic |
| TTTATAGATGGGAAATCCCT+GGG | 0.557702 | 4.2:-26671322 | MS.gene83154:intron |
| CAAATGTTTGATTTGGAATG+GGG | 0.560231 | 4.2:+26673744 | None:intergenic |
| ATCGTTCTCTGAATTTCCCA+GGG | 0.560778 | 4.2:+26671306 | None:intergenic |
| CCTGCCAATGATGGTTCGCA+TGG | 0.561781 | 4.2:-26669769 | MS.gene83154:CDS |
| TACAACTACGACGAATTGAT+GGG | 0.563220 | 4.2:-26667172 | MS.gene83154:CDS |
| CAACCACTGTCACAAAAGGT+AGG | 0.575284 | 4.2:-26674054 | MS.gene83154:CDS |
| CGGCAGTTACTGAATATCAT+GGG | 0.576863 | 4.2:-26668379 | MS.gene83154:CDS |
| GGCCAGATGGAGCTAAGCAA+TGG | 0.578954 | 4.2:-26671243 | MS.gene83154:CDS |
| GGGATTGTTGATCATGGAGG+AGG | 0.580501 | 4.2:-26674083 | None:intergenic |
| TTTATTATTTCCACATGTCG+AGG | 0.583310 | 4.2:+26670259 | None:intergenic |
| CAACATATGTTCAAGCCAAG+AGG | 0.583384 | 4.2:-26668260 | MS.gene83154:CDS |
| TATGGACTTAGATACAGGTA+TGG | 0.584953 | 4.2:-26671568 | MS.gene83154:CDS |
| CGACGAAGAAGAAGATGTAG+TGG | 0.585058 | 4.2:-26669874 | MS.gene83154:CDS |
| TTTGGAAGGGAATGAAGCTA+TGG | 0.587445 | 4.2:-26667146 | MS.gene83154:CDS |
| TAGGGAAGTCCTTGCCAACA+AGG | 0.589757 | 4.2:+26667108 | None:intergenic |
| GGATTTACTTCCTCGACATG+TGG | 0.591364 | 4.2:-26670269 | MS.gene83154:CDS |
| GACGAAGAAGAAGATGTAGT+GGG | 0.591470 | 4.2:-26669873 | MS.gene83154:CDS |
| GTTTAGTACAGCTGGGATGG+AGG | 0.592504 | 4.2:-26667651 | MS.gene83154:intron |
| TTATCTATACCTAATGTGCT+GGG | 0.596409 | 4.2:+26667756 | None:intergenic |
| TCTTGCCGATGATCCTGTTG+AGG | 0.596729 | 4.2:-26669970 | MS.gene83154:CDS |
| AACCACTGTCACAAAAGGTA+GGG | 0.597863 | 4.2:-26674053 | MS.gene83154:intron |
| AGGGTAATTCAGTGTTGCCA+AGG | 0.609943 | 4.2:+26671600 | None:intergenic |
| TAAGTCCATATCCCCATGCA+GGG | 0.610745 | 4.2:+26671581 | None:intergenic |
| AATTGATGGGATCTTTGGAA+GGG | 0.613386 | 4.2:-26667159 | MS.gene83154:CDS |
| TATAACGAAGGACGGTCAGG+AGG | 0.619104 | 4.2:-26671530 | MS.gene83154:CDS |
| TGTCATGAAGAATGCAGAGA+AGG | 0.620102 | 4.2:-26671062 | MS.gene83154:intron |
| CACGAGCTGAAGAAATTGCA+GGG | 0.620721 | 4.2:-26667509 | MS.gene83154:CDS |
| AATGAAAGAATTGAGTGCTG+AGG | 0.627614 | 4.2:-26668335 | MS.gene83154:CDS |
| GGAGCTAAGCAATGGACTGG+AGG | 0.628655 | 4.2:-26671235 | MS.gene83154:CDS |
| ATTCAAACAACGTATAACGA+AGG | 0.632464 | 4.2:-26671542 | MS.gene83154:CDS |
| GTGCAAATTGGAACTCTCGA+TGG | 0.634864 | 4.2:-26667588 | MS.gene83154:CDS |
| GTGCCAAGAGGAAGTTGACA+AGG | 0.636085 | 4.2:-26667075 | MS.gene83154:CDS |
| TTTGAAGGCTTTCAATACTG+GGG | 0.639183 | 4.2:-26671104 | MS.gene83154:CDS |
| CCACAATCGCAAGTTTATGG+TGG | 0.645345 | 4.2:+26671156 | None:intergenic |
| TATTGGAACATCATAAGCAA+CGG | 0.649331 | 4.2:+26671198 | None:intergenic |
| AAACAACGTATAACGAAGGA+CGG | 0.658557 | 4.2:-26671538 | MS.gene83154:CDS |
| AGTTGCTGAAAACTGGCTTG+AGG | 0.661479 | 4.2:-26671506 | MS.gene83154:CDS |
| TGTTGCCAGCGACAAAGCAG+CGG | 0.667849 | 4.2:-26673636 | MS.gene83154:CDS |
| CAACAAGGAAATAATCAGCA+CGG | 0.670194 | 4.2:+26667123 | None:intergenic |
| TAGCTACTTGGAGTGCCAAG+AGG | 0.674127 | 4.2:-26667087 | MS.gene83154:CDS |
| GTGCCTCTGGTAGAACTGTG+TGG | 0.675525 | 4.2:+26670320 | None:intergenic |
| ATGAGGATCTGCAATCAGAG+TGG | 0.676696 | 4.2:-26669131 | MS.gene83154:CDS |
| ACACTGAATTACCCTGCATG+GGG | 0.680238 | 4.2:-26671592 | MS.gene83154:CDS |
| AAAGAACGACTCATTGGACA+AGG | 0.698404 | 4.2:-26673608 | MS.gene83154:intron |
| AAACCACACAGTTCTACCAG+AGG | 0.720864 | 4.2:-26670323 | MS.gene83154:CDS |
| ACGAAGAAGAAGATGTAGTG+GGG | 0.722856 | 4.2:-26669872 | MS.gene83154:CDS |
| GCAAATTGGAACTCTCGATG+GGG | 0.738537 | 4.2:-26667586 | MS.gene83154:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 26666703 | 26674092 | 26666703 | ID=MS.gene83154 |
| chr4.2 | mRNA | 26666703 | 26674092 | 26666703 | ID=MS.gene83154.t1;Parent=MS.gene83154 |
| chr4.2 | exon | 26674054 | 26674092 | 26674054 | ID=MS.gene83154.t1.exon1;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26674054 | 26674092 | 26674054 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26673609 | 26673789 | 26673609 | ID=MS.gene83154.t1.exon2;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26673609 | 26673789 | 26673609 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26671473 | 26671625 | 26671473 | ID=MS.gene83154.t1.exon3;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26671473 | 26671625 | 26671473 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26671063 | 26671337 | 26671063 | ID=MS.gene83154.t1.exon4;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26671063 | 26671337 | 26671063 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26670243 | 26670392 | 26670243 | ID=MS.gene83154.t1.exon5;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26670243 | 26670392 | 26670243 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26669715 | 26670123 | 26669715 | ID=MS.gene83154.t1.exon6;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26669715 | 26670123 | 26669715 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26669074 | 26669180 | 26669074 | ID=MS.gene83154.t1.exon7;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26669074 | 26669180 | 26669074 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26668323 | 26668425 | 26668323 | ID=MS.gene83154.t1.exon8;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26668323 | 26668425 | 26668323 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26668191 | 26668294 | 26668191 | ID=MS.gene83154.t1.exon9;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26668191 | 26668294 | 26668191 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26667766 | 26667842 | 26667766 | ID=MS.gene83154.t1.exon10;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26667766 | 26667842 | 26667766 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26667482 | 26667662 | 26667482 | ID=MS.gene83154.t1.exon11;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26667482 | 26667662 | 26667482 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26667058 | 26667257 | 26667058 | ID=MS.gene83154.t1.exon12;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26667058 | 26667257 | 26667058 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| chr4.2 | exon | 26666703 | 26666727 | 26666703 | ID=MS.gene83154.t1.exon13;Parent=MS.gene83154.t1 |
| chr4.2 | CDS | 26666703 | 26666727 | 26666703 | ID=cds.MS.gene83154.t1;Parent=MS.gene83154.t1 |
| Gene Sequence |
| Protein sequence |
