Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87842.t1 | XP_013444995.1 | 90.8 | 326 | 28 | 2 | 1 | 324 | 1 | 326 | 1.60E-165 | 592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87842.t1 | Q9LE33 | 53.4 | 322 | 144 | 3 | 4 | 323 | 3 | 320 | 2.2e-86 | 320.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87842.t1 | A0A072TZQ8 | 90.8 | 326 | 28 | 2 | 1 | 324 | 1 | 326 | 1.2e-165 | 592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24945 | MS.gene87842 | PPI |
| MS.gene24946 | MS.gene87842 | PPI |
| MS.gene068259 | MS.gene87842 | PPI |
| MS.gene87842 | MS.gene07262 | PPI |
| MS.gene062351 | MS.gene87842 | PPI |
| MS.gene20783 | MS.gene87842 | PPI |
| MS.gene068263 | MS.gene87842 | PPI |
| MS.gene87842 | MS.gene37513 | PPI |
| MS.gene87842 | MS.gene068262 | PPI |
| MS.gene74946 | MS.gene87842 | PPI |
| MS.gene33395 | MS.gene87842 | PPI |
| MS.gene87842 | MS.gene33394 | PPI |
| MS.gene76198 | MS.gene87842 | PPI |
| MS.gene065032 | MS.gene87842 | PPI |
| MS.gene030057 | MS.gene87842 | PPI |
| MS.gene029300 | MS.gene87842 | PPI |
| MS.gene87842 | MS.gene20834 | PPI |
| MS.gene24947 | MS.gene87842 | PPI |
| MS.gene017129 | MS.gene87842 | PPI |
| MS.gene038363 | MS.gene87842 | PPI |
| MS.gene87842 | MS.gene33396 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87842.t1 | MTR_8g033410 | 90.798 | 326 | 28 | 2 | 1 | 324 | 1 | 326 | 0.0 | 605 |
| MS.gene87842.t1 | MTR_8g033400 | 81.115 | 323 | 61 | 0 | 2 | 324 | 11 | 333 | 0.0 | 538 |
| MS.gene87842.t1 | MTR_8g033390 | 59.190 | 321 | 129 | 2 | 6 | 324 | 3 | 323 | 4.89e-138 | 394 |
| MS.gene87842.t1 | MTR_7g075830 | 51.603 | 312 | 133 | 5 | 29 | 323 | 4 | 314 | 3.46e-101 | 300 |
| MS.gene87842.t1 | MTR_4g012960 | 42.244 | 303 | 168 | 2 | 22 | 324 | 15 | 310 | 6.52e-84 | 256 |
| MS.gene87842.t1 | MTR_4g013090 | 41.830 | 306 | 168 | 3 | 22 | 324 | 15 | 313 | 7.38e-83 | 253 |
| MS.gene87842.t1 | MTR_4g013100 | 40.196 | 306 | 173 | 3 | 22 | 324 | 16 | 314 | 1.91e-81 | 249 |
| MS.gene87842.t1 | MTR_2g101840 | 45.215 | 303 | 161 | 3 | 23 | 324 | 16 | 314 | 3.17e-78 | 241 |
| MS.gene87842.t1 | MTR_4g013135 | 39.869 | 306 | 174 | 3 | 22 | 324 | 15 | 313 | 1.64e-67 | 214 |
| MS.gene87842.t1 | MTR_3g005970 | 27.507 | 349 | 200 | 11 | 3 | 319 | 48 | 375 | 2.62e-28 | 113 |
| MS.gene87842.t1 | MTR_1g112510 | 27.308 | 260 | 160 | 4 | 85 | 319 | 94 | 349 | 9.94e-23 | 97.8 |
| MS.gene87842.t1 | MTR_4g005880 | 28.137 | 263 | 163 | 8 | 78 | 322 | 152 | 406 | 6.23e-19 | 87.8 |
| MS.gene87842.t1 | MTR_1g107480 | 27.734 | 256 | 167 | 7 | 78 | 323 | 119 | 366 | 9.76e-19 | 87.4 |
| MS.gene87842.t1 | MTR_6g007170 | 23.729 | 295 | 187 | 7 | 39 | 317 | 95 | 367 | 9.42e-15 | 74.7 |
| MS.gene87842.t1 | MTR_6g007175 | 23.693 | 287 | 178 | 7 | 39 | 317 | 64 | 317 | 8.55e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87842.t1 | AT2G45630 | 52.615 | 325 | 145 | 5 | 5 | 324 | 18 | 338 | 1.28e-112 | 330 |
| MS.gene87842.t1 | AT1G12550 | 53.416 | 322 | 144 | 3 | 4 | 323 | 3 | 320 | 9.12e-112 | 327 |
| MS.gene87842.t1 | AT1G79870 | 42.157 | 306 | 167 | 3 | 22 | 324 | 15 | 313 | 5.35e-80 | 246 |
| MS.gene87842.t1 | AT1G79870 | 39.934 | 303 | 159 | 3 | 22 | 324 | 15 | 294 | 2.06e-69 | 218 |
| MS.gene87842.t1 | AT2G45630 | 44.872 | 156 | 78 | 4 | 2 | 153 | 15 | 166 | 1.52e-33 | 122 |
| MS.gene87842.t1 | AT5G28310 | 38.660 | 194 | 66 | 4 | 133 | 324 | 91 | 233 | 7.19e-31 | 116 |
| MS.gene87842.t1 | AT1G72190 | 26.140 | 329 | 195 | 10 | 4 | 306 | 47 | 353 | 2.29e-29 | 115 |
| MS.gene87842.t1 | AT1G68010 | 27.626 | 257 | 163 | 4 | 85 | 319 | 94 | 349 | 8.15e-22 | 95.1 |
| MS.gene87842.t1 | AT1G68010 | 28.958 | 259 | 160 | 5 | 85 | 320 | 94 | 351 | 1.03e-21 | 94.7 |
| MS.gene87842.t1 | AT1G68010 | 27.519 | 258 | 163 | 5 | 85 | 319 | 94 | 350 | 3.84e-20 | 90.5 |
| MS.gene87842.t1 | AT4G34200 | 27.451 | 255 | 169 | 6 | 78 | 323 | 125 | 372 | 3.22e-19 | 88.6 |
| MS.gene87842.t1 | AT1G17745 | 26.415 | 265 | 169 | 8 | 78 | 324 | 146 | 402 | 3.51e-19 | 88.6 |
| MS.gene87842.t1 | AT5G14780 | 24.407 | 295 | 193 | 7 | 39 | 321 | 67 | 343 | 1.30e-18 | 85.9 |
| MS.gene87842.t1 | AT5G14780 | 24.407 | 295 | 193 | 7 | 39 | 321 | 79 | 355 | 1.41e-18 | 85.9 |
| MS.gene87842.t1 | AT5G14780 | 24.407 | 295 | 193 | 7 | 39 | 321 | 93 | 369 | 1.96e-18 | 85.5 |
| MS.gene87842.t1 | AT3G19480 | 27.953 | 254 | 169 | 6 | 78 | 323 | 110 | 357 | 2.86e-18 | 85.9 |
| MS.gene87842.t1 | AT1G17745 | 24.653 | 288 | 172 | 8 | 78 | 324 | 146 | 429 | 1.76e-15 | 77.8 |
Find 104 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTTGTGGAACAAAATT+TGG | 0.164622 | 8.4:+62024219 | MS.gene87842:CDS |
| TTGGAGGTATCCGGGGAATT+CGG | 0.279363 | 8.4:-62022555 | None:intergenic |
| TTCGGAGGATGTTGCTGATA+TGG | 0.291825 | 8.4:+62022835 | MS.gene87842:CDS |
| TTACTGGTGTTTCAGATATC+AGG | 0.305036 | 8.4:+62023752 | MS.gene87842:intron |
| CATTTCCGCCATTCTCTGTA+TGG | 0.309952 | 8.4:+62022670 | MS.gene87842:CDS |
| GTGTCGGCGTCGGGGAATTC+AGG | 0.311339 | 8.4:+62022790 | MS.gene87842:CDS |
| GTGAAGATGGGTTTATGATA+TGG | 0.322262 | 8.4:-62022598 | None:intergenic |
| TCCTAAAGAGTTCTCTTCAT+TGG | 0.327313 | 8.4:+62024135 | MS.gene87842:CDS |
| CCTCGACGTGTGTCGGCGTC+GGG | 0.328540 | 8.4:+62022781 | MS.gene87842:CDS |
| GCTTCAGCCGCCTGCATCTT+GGG | 0.330328 | 8.4:+62022919 | MS.gene87842:CDS |
| GGACCGTGAAAGAATACTTT+TGG | 0.335420 | 8.4:-62022530 | None:intergenic |
| TGGAGGTATCCGGGGAATTC+GGG | 0.335490 | 8.4:-62022554 | None:intergenic |
| AATTCAATCAACTATATAAC+TGG | 0.342058 | 8.4:-62024274 | None:intergenic |
| TCCAATGAAGAGAACTCTTT+AGG | 0.349885 | 8.4:-62024136 | None:intergenic |
| TGATATGGCTGTGGCTTTGT+TGG | 0.364353 | 8.4:+62022850 | MS.gene87842:CDS |
| TGAGATTGGAGGTGCTGGTT+TGG | 0.372193 | 8.4:+62024087 | MS.gene87842:CDS |
| AGGATTGGGTTGGAGGTATC+CGG | 0.373715 | 8.4:-62022564 | None:intergenic |
| AGGGAGAAGGTGGAGAATTT+CGG | 0.376049 | 8.4:-62022711 | None:intergenic |
| ATGGAAGTTGTGGGAAGGAT+TGG | 0.380138 | 8.4:-62022579 | None:intergenic |
| AAAGATTGGAATTGTTGGTC+TGG | 0.384913 | 8.4:+62023778 | MS.gene87842:CDS |
| TGGAGAGAGGGAAGTGAAGA+TGG | 0.387521 | 8.4:-62022611 | None:intergenic |
| GGCTTCAGCCGCCTGCATCT+TGG | 0.390288 | 8.4:+62022918 | MS.gene87842:CDS |
| ACAGAAGTCATGTTGGCATT+AGG | 0.391006 | 8.4:+62023986 | MS.gene87842:CDS |
| CATACAGAGAATGGCGGAAA+TGG | 0.393518 | 8.4:-62022669 | None:intergenic |
| TGTGGGAAGGATTGGGTTGG+AGG | 0.397492 | 8.4:-62022571 | None:intergenic |
| GGAATTCAGGTCGCCAATGC+TGG | 0.417890 | 8.4:+62022803 | MS.gene87842:CDS |
| CTTAACTTTAGAGTCACATA+TGG | 0.419907 | 8.4:+62024189 | MS.gene87842:CDS |
| GAGGTCAATGTGATTAGTTC+CGG | 0.424802 | 8.4:-62022762 | None:intergenic |
| TGGAAGTTGTGGGAAGGATT+GGG | 0.426704 | 8.4:-62022578 | None:intergenic |
| ATTGTTGGTCTGGGAAGAAT+TGG | 0.427657 | 8.4:+62023788 | MS.gene87842:CDS |
| AGGTGCTCTCATTGATGAAA+AGG | 0.435320 | 8.4:+62024039 | MS.gene87842:CDS |
| TGTTTGATTGAAAATGAGAT+TGG | 0.437530 | 8.4:+62024073 | MS.gene87842:CDS |
| CTCCCAAAAGTATTCTTTCA+CGG | 0.439453 | 8.4:+62022527 | MS.gene87842:CDS |
| GGATTGGGTTGGAGGTATCC+GGG | 0.451687 | 8.4:-62022563 | None:intergenic |
| TGGGAGATTCTTTGTTTCAT+CGG | 0.451982 | 8.4:-62022510 | None:intergenic |
| TCTAACACAGTGGAATAGTA+AGG | 0.453055 | 8.4:-62023893 | None:intergenic |
| AAGATTGGAATTGTTGGTCT+GGG | 0.454839 | 8.4:+62023779 | MS.gene87842:CDS |
| TGTTGACAATGTGCCTCGTT+TGG | 0.459122 | 8.4:-62023964 | None:intergenic |
| GGAAGCATTGTGAGGGTTGG+TGG | 0.461511 | 8.4:-62022645 | None:intergenic |
| GAGGGTTGGTGGATATGAAT+TGG | 0.461733 | 8.4:-62022634 | None:intergenic |
| GCAAAGAGGCTTGAAACATT+CGG | 0.463871 | 8.4:+62023821 | MS.gene87842:CDS |
| ACCTCGACGTGTGTCGGCGT+CGG | 0.475926 | 8.4:+62022780 | MS.gene87842:CDS |
| GGTTTATGATATGGAAGTTG+TGG | 0.492170 | 8.4:-62022589 | None:intergenic |
| CACGGTCCACCCGAATTCCC+CGG | 0.495030 | 8.4:+62022545 | MS.gene87842:CDS |
| ATTTCCGCCATTCTCTGTAT+GGG | 0.500386 | 8.4:+62022671 | MS.gene87842:CDS |
| GGAGAGAGGGAAGTGAAGAT+GGG | 0.503537 | 8.4:-62022610 | None:intergenic |
| GTGGCTTTGTTGGTTGATGT+TGG | 0.505017 | 8.4:+62022860 | MS.gene87842:CDS |
| TAGTAAGGGTACGAAACTAA+TGG | 0.505628 | 8.4:-62023878 | None:intergenic |
| GAAAATGAGATTGGAGGTGC+TGG | 0.505907 | 8.4:+62024082 | MS.gene87842:CDS |
| TTCATCATGACCTCCAGTGC+CGG | 0.509827 | 8.4:+62022743 | MS.gene87842:CDS |
| CACTGGAGGTCATGATGAAA+CGG | 0.512733 | 8.4:-62022739 | None:intergenic |
| GGCGGAATCATAGTGAATGT+TGG | 0.516959 | 8.4:+62024013 | MS.gene87842:CDS |
| GGAAGATTTCAGCGGCGGAT+CGG | 0.519872 | 8.4:+62022885 | MS.gene87842:CDS |
| AATGTGATTAGTTCCGGCAC+TGG | 0.522357 | 8.4:-62022756 | None:intergenic |
| TATGGGTATCTGCCAACTTG+TGG | 0.528506 | 8.4:+62024207 | MS.gene87842:CDS |
| GCTTGAAACATTCGGTTGCA+TGG | 0.532128 | 8.4:+62023829 | MS.gene87842:CDS |
| CTTTGTTGGTTGATGTTGGT+AGG | 0.535021 | 8.4:+62022864 | MS.gene87842:CDS |
| TTAACTTTAGAGTCACATAT+GGG | 0.535166 | 8.4:+62024190 | MS.gene87842:CDS |
| GTCATGTTGGCATTAGGAAA+AGG | 0.535996 | 8.4:+62023992 | MS.gene87842:CDS |
| GCATGGTATCATACAACTCT+CGG | 0.536765 | 8.4:+62023846 | MS.gene87842:CDS |
| GTCATGATGAAACGGAGGCA+AGG | 0.537685 | 8.4:-62022731 | None:intergenic |
| GTTTATGATATGGAAGTTGT+GGG | 0.545502 | 8.4:-62022588 | None:intergenic |
| GGAGGAAGCATTGTGAGGGT+TGG | 0.551682 | 8.4:-62022648 | None:intergenic |
| AGTGGAAAATCCCAAGATGC+AGG | 0.552755 | 8.4:-62022929 | None:intergenic |
| AGTTGTGGGAAGGATTGGGT+TGG | 0.553461 | 8.4:-62022574 | None:intergenic |
| GATATGAATTGGTGGAGAGA+GGG | 0.554083 | 8.4:-62022623 | None:intergenic |
| TCATGATGAAACGGAGGCAA+GGG | 0.556509 | 8.4:-62022730 | None:intergenic |
| TTGATTGAAAATGAGATTGG+AGG | 0.564611 | 8.4:+62024076 | MS.gene87842:CDS |
| GTATAGACCCATACAGAGAA+TGG | 0.566297 | 8.4:-62022678 | None:intergenic |
| GGATATGAATTGGTGGAGAG+AGG | 0.569776 | 8.4:-62022624 | None:intergenic |
| GGAGAATTTCGGCGTTGAGA+GGG | 0.572565 | 8.4:-62022700 | None:intergenic |
| ACAGAGAATGGCGGAAATGG+AGG | 0.573109 | 8.4:-62022666 | None:intergenic |
| ATCATAGTGAATGTTGGAAG+AGG | 0.578453 | 8.4:+62024019 | MS.gene87842:CDS |
| GTGATTAGTTCCGGCACTGG+AGG | 0.582358 | 8.4:-62022753 | None:intergenic |
| ATGATATGGAAGTTGTGGGA+AGG | 0.583022 | 8.4:-62022584 | None:intergenic |
| TGAAACGGAGGCAAGGGAGA+AGG | 0.587990 | 8.4:-62022724 | None:intergenic |
| AACGGAGGCAAGGGAGAAGG+TGG | 0.589396 | 8.4:-62022721 | None:intergenic |
| AGGTATCCGGGGAATTCGGG+TGG | 0.591032 | 8.4:-62022551 | None:intergenic |
| GGATGTTGCTGATATGGCTG+TGG | 0.591447 | 8.4:+62022841 | MS.gene87842:CDS |
| AGACAGCTGCATGAGGTGAA+AGG | 0.593691 | 8.4:-62024168 | None:intergenic |
| TGGAGAATTTCGGCGTTGAG+AGG | 0.594027 | 8.4:-62022701 | None:intergenic |
| ACATTGACCTCGACGTGTGT+CGG | 0.597975 | 8.4:+62022774 | MS.gene87842:CDS |
| GGTTGGTGGATATGAATTGG+TGG | 0.599312 | 8.4:-62022631 | None:intergenic |
| GAGAACTCTTTAGGAACATG+AGG | 0.603433 | 8.4:-62024127 | None:intergenic |
| TATATAACTGGAGTAATCAG+AGG | 0.619006 | 8.4:-62024262 | None:intergenic |
| AAATGGAGGAAGCATTGTGA+GGG | 0.624570 | 8.4:-62022652 | None:intergenic |
| GTGATTTAAACGACCAAACG+AGG | 0.626563 | 8.4:+62023951 | MS.gene87842:CDS |
| CTAACACAGTGGAATAGTAA+GGG | 0.627854 | 8.4:-62023892 | None:intergenic |
| GATTGGGTTGGAGGTATCCG+GGG | 0.628352 | 8.4:-62022562 | None:intergenic |
| TTGCAGACCTTAGAACCAAG+TGG | 0.630404 | 8.4:-62022947 | None:intergenic |
| CTCGACGTGTGTCGGCGTCG+GGG | 0.632956 | 8.4:+62022782 | MS.gene87842:CDS |
| GAAATGGAGGAAGCATTGTG+AGG | 0.633991 | 8.4:-62022653 | None:intergenic |
| TGGTAGGAAGATTTCAGCGG+CGG | 0.635656 | 8.4:+62022880 | MS.gene87842:CDS |
| TGTCAACACAGAAGTCATGT+TGG | 0.641258 | 8.4:+62023979 | MS.gene87842:CDS |
| TTGGCTTAGAAGTTGCAAAG+AGG | 0.643774 | 8.4:+62023807 | MS.gene87842:CDS |
| AAAGTTAAGACAGCTGCATG+AGG | 0.654646 | 8.4:-62024175 | None:intergenic |
| TGTTGGTAGGAAGATTTCAG+CGG | 0.675352 | 8.4:+62022877 | MS.gene87842:CDS |
| GGAAAATCCCAAGATGCAGG+CGG | 0.680887 | 8.4:-62022926 | None:intergenic |
| ATGTTGGCATTAGGAAAAGG+CGG | 0.693207 | 8.4:+62023995 | MS.gene87842:CDS |
| ACAACAGAGAATGAGTACAC+TGG | 0.694649 | 8.4:-62023930 | None:intergenic |
| TGGAGGTCATGATGAAACGG+AGG | 0.697117 | 8.4:-62022736 | None:intergenic |
| CCCGACGCCGACACACGTCG+AGG | 0.714708 | 8.4:-62022781 | None:intergenic |
| TAGACCCATACAGAGAATGG+CGG | 0.718189 | 8.4:-62022675 | None:intergenic |
| TGTTGCAAGCTCTAACACAG+TGG | 0.748331 | 8.4:-62023903 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGTAGATTATCAAAAA+TGG | - | chr8.4:62023401-62023420 | None:intergenic | 15.0% |
| !! | ATTAATGATAAACTGAATGA+TGG | + | chr8.4:62023236-62023255 | MS.gene87842:intron | 20.0% |
| !! | GTAGTGTTTGATAAAATTAA+CGG | + | chr8.4:62023283-62023302 | MS.gene87842:intron | 20.0% |
| !!! | TTTGATAATAAACATGTTAC+TGG | + | chr8.4:62023736-62023755 | MS.gene87842:intron | 20.0% |
| ! | ACATTTGAACAACAAATACA+TGG | - | chr8.4:62023032-62023051 | None:intergenic | 25.0% |
| ! | CTTAGCTTATATTTATTCTC+TGG | + | chr8.4:62023427-62023446 | MS.gene87842:intron | 25.0% |
| ! | TCAAAAATGGCTATAAGATT+TGG | - | chr8.4:62023388-62023407 | None:intergenic | 25.0% |
| ! | TGTTTGATTGAAAATGAGAT+TGG | + | chr8.4:62024073-62024092 | MS.gene87842:CDS | 25.0% |
| !! | ATCAAAGTTGTCTTTTCAAA+TGG | + | chr8.4:62023190-62023209 | MS.gene87842:intron | 25.0% |
| !!! | CAATGCTGGAAATATTTTTT+CGG | + | chr8.4:62022817-62022836 | MS.gene87842:CDS | 25.0% |
| !!! | GGGAAAAACATATTTTGATA+GGG | + | chr8.4:62023619-62023638 | MS.gene87842:intron | 25.0% |
| !!! | TTAACTTTAGAGTCACATAT+GGG | + | chr8.4:62024190-62024209 | MS.gene87842:CDS | 25.0% |
| AAGGTGAATTTCTAACTACT+AGG | - | chr8.4:62023538-62023557 | None:intergenic | 30.0% | |
| AATTTCAAGGTCATAGAAGA+TGG | - | chr8.4:62023360-62023379 | None:intergenic | 30.0% | |
| CACATGATGTTAGAAAAACA+AGG | + | chr8.4:62023161-62023180 | MS.gene87842:intron | 30.0% | |
| CAGATATCAGGAAAAAAGAT+TGG | + | chr8.4:62023764-62023783 | MS.gene87842:intron | 30.0% | |
| CGAAAAAATATTTCCAGCAT+TGG | - | chr8.4:62022819-62022838 | None:intergenic | 30.0% | |
| GGAAAAAAGATTGGAATTGT+TGG | + | chr8.4:62023773-62023792 | MS.gene87842:CDS | 30.0% | |
| GTTTATGATATGGAAGTTGT+GGG | - | chr8.4:62022591-62022610 | None:intergenic | 30.0% | |
| TATATAACTGGAGTAATCAG+AGG | - | chr8.4:62024265-62024284 | None:intergenic | 30.0% | |
| TTGATTGAAAATGAGATTGG+AGG | + | chr8.4:62024076-62024095 | MS.gene87842:CDS | 30.0% | |
| ! | AAATGGCTATAAGATTTGGT+TGG | - | chr8.4:62023384-62023403 | None:intergenic | 30.0% |
| ! | TCATACTAGTGGCATTTTAA+AGG | - | chr8.4:62023664-62023683 | None:intergenic | 30.0% |
| !! | AGATTTGGTTGGTAATTTCA+AGG | - | chr8.4:62023373-62023392 | None:intergenic | 30.0% |
| !! | CTTAACTTTAGAGTCACATA+TGG | + | chr8.4:62024189-62024208 | MS.gene87842:CDS | 30.0% |
| !!! | GGGGAAAAACATATTTTGAT+AGG | + | chr8.4:62023618-62023637 | MS.gene87842:intron | 30.0% |
| AAAGATTGGAATTGTTGGTC+TGG | + | chr8.4:62023778-62023797 | MS.gene87842:CDS | 35.0% | |
| ATCATAGTGAATGTTGGAAG+AGG | + | chr8.4:62024019-62024038 | MS.gene87842:CDS | 35.0% | |
| CAAATGTATACAACCTCCAT+TGG | + | chr8.4:62023045-62023064 | MS.gene87842:intron | 35.0% | |
| CCAACTTGTGGAACAAAATT+TGG | + | chr8.4:62024219-62024238 | MS.gene87842:CDS | 35.0% | |
| CTAACACAGTGGAATAGTAA+GGG | - | chr8.4:62023895-62023914 | None:intergenic | 35.0% | |
| GGTTTATGATATGGAAGTTG+TGG | - | chr8.4:62022592-62022611 | None:intergenic | 35.0% | |
| TCACTTATTCACTATTCGCT+AGG | - | chr8.4:62023096-62023115 | None:intergenic | 35.0% | |
| TCCAATGAAGAGAACTCTTT+AGG | - | chr8.4:62024139-62024158 | None:intergenic | 35.0% | |
| TCCTAAAGAGTTCTCTTCAT+TGG | + | chr8.4:62024135-62024154 | MS.gene87842:CDS | 35.0% | |
| TCTAACACAGTGGAATAGTA+AGG | - | chr8.4:62023896-62023915 | None:intergenic | 35.0% | |
| TTACTGGTGTTTCAGATATC+AGG | + | chr8.4:62023752-62023771 | MS.gene87842:intron | 35.0% | |
| ! | AAGATTGGAATTGTTGGTCT+GGG | + | chr8.4:62023779-62023798 | MS.gene87842:CDS | 35.0% |
| ! | CACGTCTATTTTCATACTAG+TGG | - | chr8.4:62023675-62023694 | None:intergenic | 35.0% |
| ! | CCAAATTTTGTTCCACAAGT+TGG | - | chr8.4:62024222-62024241 | None:intergenic | 35.0% |
| ! | GACCGTGAAAGAATACTTTT+GGG | - | chr8.4:62022532-62022551 | None:intergenic | 35.0% |
| ! | GTGAAGATGGGTTTATGATA+TGG | - | chr8.4:62022601-62022620 | None:intergenic | 35.0% |
| ! | TAGTAAGGGTACGAAACTAA+TGG | - | chr8.4:62023881-62023900 | None:intergenic | 35.0% |
| ! | TGGGAGATTCTTTGTTTCAT+CGG | - | chr8.4:62022513-62022532 | None:intergenic | 35.0% |
| !! | CTAGTGGCATTTTAAAGGTA+AGG | - | chr8.4:62023659-62023678 | None:intergenic | 35.0% |
| !! | CTCCCAAAAGTATTCTTTCA+CGG | + | chr8.4:62022527-62022546 | MS.gene87842:CDS | 35.0% |
| !!! | TGCTGGAAATATTTTTTCGG+AGG | + | chr8.4:62022820-62022839 | MS.gene87842:CDS | 35.0% |
| AAAGTTAAGACAGCTGCATG+AGG | - | chr8.4:62024178-62024197 | None:intergenic | 40.0% | |
| ACAACAGAGAATGAGTACAC+TGG | - | chr8.4:62023933-62023952 | None:intergenic | 40.0% | |
| ACAGAAGTCATGTTGGCATT+AGG | + | chr8.4:62023986-62024005 | MS.gene87842:CDS | 40.0% | |
| AGCTCTTGGAGACTTATTCT+CGG | + | chr8.4:62023597-62023616 | MS.gene87842:intron | 40.0% | |
| AGGTGCTCTCATTGATGAAA+AGG | + | chr8.4:62024039-62024058 | MS.gene87842:CDS | 40.0% | |
| ATGATATGGAAGTTGTGGGA+AGG | - | chr8.4:62022587-62022606 | None:intergenic | 40.0% | |
| ATGTTGGCATTAGGAAAAGG+CGG | + | chr8.4:62023995-62024014 | MS.gene87842:CDS | 40.0% | |
| ATTTCCGCCATTCTCTGTAT+GGG | + | chr8.4:62022671-62022690 | MS.gene87842:CDS | 40.0% | |
| CATGTGAGTACGAGACAAAA+TGG | - | chr8.4:62023147-62023166 | None:intergenic | 40.0% | |
| CTCCATTGGACAAAAAGTAG+CGG | + | chr8.4:62023059-62023078 | MS.gene87842:intron | 40.0% | |
| GATATGAATTGGTGGAGAGA+GGG | - | chr8.4:62022626-62022645 | None:intergenic | 40.0% | |
| GCAAAGAGGCTTGAAACATT+CGG | + | chr8.4:62023821-62023840 | MS.gene87842:CDS | 40.0% | |
| GCATGGTATCATACAACTCT+CGG | + | chr8.4:62023846-62023865 | MS.gene87842:CDS | 40.0% | |
| GTATAGACCCATACAGAGAA+TGG | - | chr8.4:62022681-62022700 | None:intergenic | 40.0% | |
| GTCATGTTGGCATTAGGAAA+AGG | + | chr8.4:62023992-62024011 | MS.gene87842:CDS | 40.0% | |
| GTGATTTAAACGACCAAACG+AGG | + | chr8.4:62023951-62023970 | MS.gene87842:CDS | 40.0% | |
| TGTCAACACAGAAGTCATGT+TGG | + | chr8.4:62023979-62023998 | MS.gene87842:CDS | 40.0% | |
| TTGGCTTAGAAGTTGCAAAG+AGG | + | chr8.4:62023807-62023826 | MS.gene87842:CDS | 40.0% | |
| ! | ATTGTTGGTCTGGGAAGAAT+TGG | + | chr8.4:62023788-62023807 | MS.gene87842:CDS | 40.0% |
| ! | CTTTGTTGGTTGATGTTGGT+AGG | + | chr8.4:62022864-62022883 | MS.gene87842:CDS | 40.0% |
| ! | GAGAACTCTTTAGGAACATG+AGG | - | chr8.4:62024130-62024149 | None:intergenic | 40.0% |
| ! | GAGGTCAATGTGATTAGTTC+CGG | - | chr8.4:62022765-62022784 | None:intergenic | 40.0% |
| ! | GGACCGTGAAAGAATACTTT+TGG | - | chr8.4:62022533-62022552 | None:intergenic | 40.0% |
| ! | TGTTGGTAGGAAGATTTCAG+CGG | + | chr8.4:62022877-62022896 | MS.gene87842:CDS | 40.0% |
| !! | AAATGGAGGAAGCATTGTGA+GGG | - | chr8.4:62022655-62022674 | None:intergenic | 40.0% |
| !!! | ATCCGCTACTTTTTGTCCAA+TGG | - | chr8.4:62023064-62023083 | None:intergenic | 40.0% |
| !!! | GGATTTTCCACTTGGTTCTA+AGG | + | chr8.4:62022940-62022959 | MS.gene87842:CDS | 40.0% |
| ACCAACTTGAGCTAAGCTCT+TGG | + | chr8.4:62023583-62023602 | MS.gene87842:intron | 45.0% | |
| AGGGAGAAGGTGGAGAATTT+CGG | - | chr8.4:62022714-62022733 | None:intergenic | 45.0% | |
| AGTGGAAAATCCCAAGATGC+AGG | - | chr8.4:62022932-62022951 | None:intergenic | 45.0% | |
| ATGGAAGTTGTGGGAAGGAT+TGG | - | chr8.4:62022582-62022601 | None:intergenic | 45.0% | |
| CACTGGAGGTCATGATGAAA+CGG | - | chr8.4:62022742-62022761 | None:intergenic | 45.0% | |
| CATTTCCGCCATTCTCTGTA+TGG | + | chr8.4:62022670-62022689 | MS.gene87842:CDS | 45.0% | |
| CTCTTGGAGACTTATTCTCG+GGG | + | chr8.4:62023599-62023618 | MS.gene87842:intron | 45.0% | |
| GCTCTTGGAGACTTATTCTC+GGG | + | chr8.4:62023598-62023617 | MS.gene87842:intron | 45.0% | |
| GCTTGAAACATTCGGTTGCA+TGG | + | chr8.4:62023829-62023848 | MS.gene87842:CDS | 45.0% | |
| GGATATGAATTGGTGGAGAG+AGG | - | chr8.4:62022627-62022646 | None:intergenic | 45.0% | |
| GGCGGAATCATAGTGAATGT+TGG | + | chr8.4:62024013-62024032 | MS.gene87842:CDS | 45.0% | |
| TAGACCCATACAGAGAATGG+CGG | - | chr8.4:62022678-62022697 | None:intergenic | 45.0% | |
| TATGGGTATCTGCCAACTTG+TGG | + | chr8.4:62024207-62024226 | MS.gene87842:CDS | 45.0% | |
| TCATGATGAAACGGAGGCAA+GGG | - | chr8.4:62022733-62022752 | None:intergenic | 45.0% | |
| TCCAAGAGCTTAGCTCAAGT+TGG | - | chr8.4:62023587-62023606 | None:intergenic | 45.0% | |
| TGGAAGTTGTGGGAAGGATT+GGG | - | chr8.4:62022581-62022600 | None:intergenic | 45.0% | |
| TGTTGACAATGTGCCTCGTT+TGG | - | chr8.4:62023967-62023986 | None:intergenic | 45.0% | |
| TTCGGAGGATGTTGCTGATA+TGG | + | chr8.4:62022835-62022854 | MS.gene87842:CDS | 45.0% | |
| TTGCAGACCTTAGAACCAAG+TGG | - | chr8.4:62022950-62022969 | None:intergenic | 45.0% | |
| ! | AATGTGATTAGTTCCGGCAC+TGG | - | chr8.4:62022759-62022778 | None:intergenic | 45.0% |
| ! | CATACAGAGAATGGCGGAAA+TGG | - | chr8.4:62022672-62022691 | None:intergenic | 45.0% |
| ! | GAAAATGAGATTGGAGGTGC+TGG | + | chr8.4:62024082-62024101 | MS.gene87842:CDS | 45.0% |
| ! | GCATCTTGGGATTTTCCACT+TGG | + | chr8.4:62022932-62022951 | MS.gene87842:CDS | 45.0% |
| ! | TGTTGCAAGCTCTAACACAG+TGG | - | chr8.4:62023906-62023925 | None:intergenic | 45.0% |
| !! | GAAATGGAGGAAGCATTGTG+AGG | - | chr8.4:62022656-62022675 | None:intergenic | 45.0% |
| !! | GAGGGTTGGTGGATATGAAT+TGG | - | chr8.4:62022637-62022656 | None:intergenic | 45.0% |
| !! | GGTTGGTGGATATGAATTGG+TGG | - | chr8.4:62022634-62022653 | None:intergenic | 45.0% |
| !! | GTGGCTTTGTTGGTTGATGT+TGG | + | chr8.4:62022860-62022879 | MS.gene87842:CDS | 45.0% |
| !! | TGATATGGCTGTGGCTTTGT+TGG | + | chr8.4:62022850-62022869 | MS.gene87842:CDS | 45.0% |
| !!! | CGCTACTTTTTGTCCAATGG+AGG | - | chr8.4:62023061-62023080 | None:intergenic | 45.0% |
| !! | ATTGTAAAATATATTTAAAA+AGG | - | chr8.4:62023557-62023576 | None:intergenic | 5.0% |
| ACATTGACCTCGACGTGTGT+CGG | + | chr8.4:62022774-62022793 | MS.gene87842:CDS | 50.0% | |
| AGACAGCTGCATGAGGTGAA+AGG | - | chr8.4:62024171-62024190 | None:intergenic | 50.0% | |
| AGTTGTGGGAAGGATTGGGT+TGG | - | chr8.4:62022577-62022596 | None:intergenic | 50.0% | |
| GGAAAATCCCAAGATGCAGG+CGG | - | chr8.4:62022929-62022948 | None:intergenic | 50.0% | |
| GGAGAGAGGGAAGTGAAGAT+GGG | - | chr8.4:62022613-62022632 | None:intergenic | 50.0% | |
| GGATGTTGCTGATATGGCTG+TGG | + | chr8.4:62022841-62022860 | MS.gene87842:CDS | 50.0% | |
| GTCATGATGAAACGGAGGCA+AGG | - | chr8.4:62022734-62022753 | None:intergenic | 50.0% | |
| TGGAGAGAGGGAAGTGAAGA+TGG | - | chr8.4:62022614-62022633 | None:intergenic | 50.0% | |
| TGGAGGTCATGATGAAACGG+AGG | - | chr8.4:62022739-62022758 | None:intergenic | 50.0% | |
| TGGTAGGAAGATTTCAGCGG+CGG | + | chr8.4:62022880-62022899 | MS.gene87842:CDS | 50.0% | |
| TTCATCATGACCTCCAGTGC+CGG | + | chr8.4:62022743-62022762 | MS.gene87842:CDS | 50.0% | |
| ! | ACAGAGAATGGCGGAAATGG+AGG | - | chr8.4:62022669-62022688 | None:intergenic | 50.0% |
| ! | GGAGAATTTCGGCGTTGAGA+GGG | - | chr8.4:62022703-62022722 | None:intergenic | 50.0% |
| ! | TGGAGAATTTCGGCGTTGAG+AGG | - | chr8.4:62022704-62022723 | None:intergenic | 50.0% |
| !! | AGGATTGGGTTGGAGGTATC+CGG | - | chr8.4:62022567-62022586 | None:intergenic | 50.0% |
| !! | TGAGATTGGAGGTGCTGGTT+TGG | + | chr8.4:62024087-62024106 | MS.gene87842:CDS | 50.0% |
| !! | TTGGAGGTATCCGGGGAATT+CGG | - | chr8.4:62022558-62022577 | None:intergenic | 50.0% |
| GGAAGATTTCAGCGGCGGAT+CGG | + | chr8.4:62022885-62022904 | MS.gene87842:CDS | 55.0% | |
| GGAATTCAGGTCGCCAATGC+TGG | + | chr8.4:62022803-62022822 | MS.gene87842:CDS | 55.0% | |
| TGAAACGGAGGCAAGGGAGA+AGG | - | chr8.4:62022727-62022746 | None:intergenic | 55.0% | |
| ! | GTGATTAGTTCCGGCACTGG+AGG | - | chr8.4:62022756-62022775 | None:intergenic | 55.0% |
| !! | CGGCGGATCGGTTTTTGAGA+AGG | + | chr8.4:62022897-62022916 | MS.gene87842:CDS | 55.0% |
| !! | GATTGGGTTGGAGGTATCCG+GGG | - | chr8.4:62022565-62022584 | None:intergenic | 55.0% |
| !! | GGAAGCATTGTGAGGGTTGG+TGG | - | chr8.4:62022648-62022667 | None:intergenic | 55.0% |
| !! | GGAGGAAGCATTGTGAGGGT+TGG | - | chr8.4:62022651-62022670 | None:intergenic | 55.0% |
| !! | GGATTGGGTTGGAGGTATCC+GGG | - | chr8.4:62022566-62022585 | None:intergenic | 55.0% |
| !! | TGGAGGTATCCGGGGAATTC+GGG | - | chr8.4:62022557-62022576 | None:intergenic | 55.0% |
| !! | TGTGGGAAGGATTGGGTTGG+AGG | - | chr8.4:62022574-62022593 | None:intergenic | 55.0% |
| AACGGAGGCAAGGGAGAAGG+TGG | - | chr8.4:62022724-62022743 | None:intergenic | 60.0% | |
| AGGTATCCGGGGAATTCGGG+TGG | - | chr8.4:62022554-62022573 | None:intergenic | 60.0% | |
| GCTTCAGCCGCCTGCATCTT+GGG | + | chr8.4:62022919-62022938 | MS.gene87842:CDS | 60.0% | |
| CACGGTCCACCCGAATTCCC+CGG | + | chr8.4:62022545-62022564 | MS.gene87842:CDS | 65.0% | |
| GGCTTCAGCCGCCTGCATCT+TGG | + | chr8.4:62022918-62022937 | MS.gene87842:CDS | 65.0% | |
| ! | ACCTCGACGTGTGTCGGCGT+CGG | + | chr8.4:62022780-62022799 | MS.gene87842:CDS | 65.0% |
| ! | GTGTCGGCGTCGGGGAATTC+AGG | + | chr8.4:62022790-62022809 | MS.gene87842:CDS | 65.0% |
| ! | CCTCGACGTGTGTCGGCGTC+GGG | + | chr8.4:62022781-62022800 | MS.gene87842:CDS | 70.0% |
| ! | CTCGACGTGTGTCGGCGTCG+GGG | + | chr8.4:62022782-62022801 | MS.gene87842:CDS | 70.0% |
| CCCGACGCCGACACACGTCG+AGG | - | chr8.4:62022784-62022803 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 62022506 | 62024285 | 62022506 | ID=MS.gene87842 |
| chr8.4 | mRNA | 62022506 | 62024285 | 62022506 | ID=MS.gene87842.t1;Parent=MS.gene87842 |
| chr8.4 | exon | 62022506 | 62022961 | 62022506 | ID=MS.gene87842.t1.exon1;Parent=MS.gene87842.t1 |
| chr8.4 | CDS | 62022506 | 62022961 | 62022506 | ID=cds.MS.gene87842.t1;Parent=MS.gene87842.t1 |
| chr8.4 | exon | 62023767 | 62024285 | 62023767 | ID=MS.gene87842.t1.exon2;Parent=MS.gene87842.t1 |
| chr8.4 | CDS | 62023767 | 62024285 | 62023767 | ID=cds.MS.gene87842.t1;Parent=MS.gene87842.t1 |
| Gene Sequence |
| Protein sequence |
