Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87846.t1 | KEH19019.1 | 89.2 | 334 | 35 | 1 | 1 | 334 | 1 | 333 | 7.10E-164 | 586.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87846.t1 | Q9LE33 | 53.2 | 327 | 138 | 5 | 13 | 333 | 3 | 320 | 3.5e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87846.t1 | A0A072TNE4 | 89.2 | 334 | 35 | 1 | 1 | 334 | 1 | 333 | 5.1e-164 | 586.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87846 | MS.gene76198 | PPI |
| MS.gene87846 | MS.gene030057 | PPI |
| MS.gene24946 | MS.gene87846 | PPI |
| MS.gene87846 | MS.gene37513 | PPI |
| MS.gene87846 | MS.gene20834 | PPI |
| MS.gene87846 | MS.gene068262 | PPI |
| MS.gene068259 | MS.gene87846 | PPI |
| MS.gene87846 | MS.gene33394 | PPI |
| MS.gene062351 | MS.gene87846 | PPI |
| MS.gene20783 | MS.gene87846 | PPI |
| MS.gene74946 | MS.gene87846 | PPI |
| MS.gene33395 | MS.gene87846 | PPI |
| MS.gene87846 | MS.gene33396 | PPI |
| MS.gene029300 | MS.gene87846 | PPI |
| MS.gene87846 | MS.gene065032 | PPI |
| MS.gene87846 | MS.gene068263 | PPI |
| MS.gene017129 | MS.gene87846 | PPI |
| MS.gene038363 | MS.gene87846 | PPI |
| MS.gene87846 | MS.gene24947 | PPI |
| MS.gene87846 | MS.gene07262 | PPI |
| MS.gene24945 | MS.gene87846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87846.t1 | MTR_8g033400 | 89.222 | 334 | 35 | 1 | 1 | 334 | 1 | 333 | 0.0 | 606 |
| MS.gene87846.t1 | MTR_8g033410 | 76.647 | 334 | 70 | 1 | 1 | 334 | 1 | 326 | 0.0 | 524 |
| MS.gene87846.t1 | MTR_8g033390 | 60.125 | 321 | 127 | 1 | 15 | 334 | 3 | 323 | 4.29e-140 | 400 |
| MS.gene87846.t1 | MTR_7g075830 | 54.209 | 297 | 121 | 5 | 51 | 333 | 19 | 314 | 1.11e-100 | 299 |
| MS.gene87846.t1 | MTR_4g012960 | 41.254 | 303 | 170 | 2 | 32 | 334 | 16 | 310 | 2.55e-84 | 257 |
| MS.gene87846.t1 | MTR_4g013100 | 40.850 | 306 | 170 | 3 | 32 | 334 | 17 | 314 | 5.91e-84 | 256 |
| MS.gene87846.t1 | MTR_4g013090 | 41.176 | 306 | 169 | 3 | 32 | 334 | 16 | 313 | 1.21e-83 | 256 |
| MS.gene87846.t1 | MTR_2g101840 | 43.421 | 304 | 166 | 3 | 32 | 334 | 16 | 314 | 1.63e-79 | 245 |
| MS.gene87846.t1 | MTR_4g013135 | 42.907 | 289 | 154 | 3 | 49 | 334 | 33 | 313 | 9.69e-70 | 220 |
| MS.gene87846.t1 | MTR_3g005970 | 26.056 | 284 | 180 | 6 | 69 | 329 | 99 | 375 | 6.00e-25 | 103 |
| MS.gene87846.t1 | MTR_1g112510 | 27.519 | 258 | 163 | 3 | 94 | 329 | 94 | 349 | 1.28e-22 | 97.8 |
| MS.gene87846.t1 | MTR_4g005880 | 26.923 | 286 | 187 | 7 | 63 | 332 | 127 | 406 | 4.16e-19 | 88.6 |
| MS.gene87846.t1 | MTR_1g107480 | 27.350 | 234 | 157 | 5 | 87 | 313 | 119 | 346 | 1.92e-17 | 83.6 |
| MS.gene87846.t1 | MTR_6g007170 | 26.966 | 267 | 170 | 7 | 76 | 327 | 111 | 367 | 5.63e-17 | 81.3 |
| MS.gene87846.t1 | MTR_7g078990 | 25.217 | 230 | 151 | 5 | 109 | 324 | 97 | 319 | 9.94e-12 | 66.2 |
| MS.gene87846.t1 | MTR_6g007175 | 25.806 | 248 | 156 | 7 | 87 | 327 | 91 | 317 | 1.48e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87846.t1 | AT2G45630 | 53.134 | 335 | 149 | 5 | 4 | 334 | 8 | 338 | 7.81e-121 | 351 |
| MS.gene87846.t1 | AT1G12550 | 53.211 | 327 | 138 | 5 | 13 | 333 | 3 | 320 | 6.27e-114 | 333 |
| MS.gene87846.t1 | AT1G79870 | 43.682 | 277 | 148 | 2 | 61 | 334 | 42 | 313 | 9.90e-78 | 241 |
| MS.gene87846.t1 | AT1G79870 | 41.241 | 274 | 140 | 2 | 61 | 334 | 42 | 294 | 2.24e-68 | 216 |
| MS.gene87846.t1 | AT2G45630 | 46.626 | 163 | 80 | 4 | 4 | 163 | 8 | 166 | 4.69e-39 | 137 |
| MS.gene87846.t1 | AT5G28310 | 36.598 | 194 | 71 | 3 | 142 | 334 | 91 | 233 | 9.48e-30 | 114 |
| MS.gene87846.t1 | AT1G72190 | 25.688 | 327 | 202 | 10 | 12 | 316 | 46 | 353 | 2.20e-27 | 110 |
| MS.gene87846.t1 | AT1G68010 | 28.295 | 258 | 161 | 3 | 94 | 329 | 94 | 349 | 5.37e-23 | 99.0 |
| MS.gene87846.t1 | AT1G68010 | 28.916 | 249 | 153 | 3 | 94 | 320 | 94 | 340 | 2.30e-22 | 96.7 |
| MS.gene87846.t1 | AT1G68010 | 28.185 | 259 | 161 | 4 | 94 | 329 | 94 | 350 | 2.10e-21 | 94.4 |
| MS.gene87846.t1 | AT1G17745 | 25.887 | 282 | 187 | 8 | 67 | 332 | 125 | 400 | 2.78e-19 | 89.4 |
| MS.gene87846.t1 | AT3G19480 | 29.804 | 255 | 163 | 8 | 67 | 312 | 89 | 336 | 3.23e-19 | 89.0 |
| MS.gene87846.t1 | AT4G34200 | 27.308 | 260 | 168 | 6 | 87 | 331 | 125 | 378 | 1.42e-18 | 87.0 |
| MS.gene87846.t1 | AT5G14780 | 25.806 | 248 | 165 | 6 | 92 | 327 | 99 | 339 | 1.47e-17 | 82.8 |
| MS.gene87846.t1 | AT5G14780 | 25.806 | 248 | 165 | 6 | 92 | 327 | 111 | 351 | 1.57e-17 | 82.8 |
| MS.gene87846.t1 | AT5G14780 | 25.806 | 248 | 165 | 6 | 92 | 327 | 125 | 365 | 2.26e-17 | 82.8 |
| MS.gene87846.t1 | AT1G17745 | 24.342 | 304 | 191 | 8 | 67 | 332 | 125 | 427 | 3.25e-16 | 80.1 |
| MS.gene87846.t1 | AT1G01510 | 23.929 | 280 | 187 | 5 | 63 | 324 | 60 | 331 | 9.81e-11 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTCTTTAGGAATATT+AGG | 0.194193 | 8.4:-62068602 | None:intergenic |
| CCAACTAGTGGAACAAAATT+TGG | 0.200522 | 8.4:+62068694 | MS.gene87846:CDS |
| GCATAATATCATACAATTCT+AGG | 0.238026 | 8.4:+62068321 | MS.gene87846:CDS |
| TTCTGAAGATGTTGCTGATA+TGG | 0.254694 | 8.4:+62067545 | MS.gene87846:CDS |
| TGACTGGTGTTTCAGTTAAC+AGG | 0.275368 | 8.4:+62068227 | MS.gene87846:intron |
| GTGTCGACGTCGCGGAATTC+AGG | 0.313830 | 8.4:+62067500 | MS.gene87846:CDS |
| TCCAATGAAAAGAACTCTTT+AGG | 0.322889 | 8.4:-62068611 | None:intergenic |
| TGCAGACAAGACGGAGGGCG+GGG | 0.358454 | 8.4:-62067440 | None:intergenic |
| TGATATGGCTGTGGCTTTGT+TGG | 0.364353 | 8.4:+62067560 | MS.gene87846:CDS |
| TGGAGGATGAAGGAGAATTC+AGG | 0.382969 | 8.4:-62067264 | None:intergenic |
| ATGGAAATTGTGAGAAGGAT+TGG | 0.386915 | 8.4:-62067289 | None:intergenic |
| CTCCCAAAGGTATTCCTTCA+TGG | 0.392849 | 8.4:+62067237 | MS.gene87846:CDS |
| TTTACTTCAGAGTCTTTCAT+TGG | 0.394682 | 8.4:+62068665 | MS.gene87846:CDS |
| GAGAAGAAGGGTTTAAGATA+TGG | 0.395144 | 8.4:-62067308 | None:intergenic |
| TGGAGAGGAGGATGAGAAGA+AGG | 0.404161 | 8.4:-62067321 | None:intergenic |
| GACGGAGGGCGGGGAGAAGT+TGG | 0.409298 | 8.4:-62067431 | None:intergenic |
| TTGGCTCAGAAGTCGCAAAA+AGG | 0.409473 | 8.4:+62068282 | MS.gene87846:CDS |
| GGAATTCAGGTTGCCGGAGC+TGG | 0.410518 | 8.4:+62067513 | MS.gene87846:CDS |
| GGAGGCATGGTGAGGATTGA+GGG | 0.414126 | 8.4:-62067355 | None:intergenic |
| AGCTTCAGCCGGCTGCATCT+TGG | 0.416408 | 8.4:+62067631 | MS.gene87846:CDS |
| GTGCAGACAAGACGGAGGGC+GGG | 0.419214 | 8.4:-62067441 | None:intergenic |
| TGTTTGATTGATGATGAGAT+TGG | 0.423622 | 8.4:+62068548 | MS.gene87846:CDS |
| GGTGCAGACAAGACGGAGGG+CGG | 0.429921 | 8.4:-62067442 | None:intergenic |
| AGGTGCTCTCATTGATGAAA+AGG | 0.435320 | 8.4:+62068514 | MS.gene87846:CDS |
| GGACCATGAAGGAATACCTT+TGG | 0.435760 | 8.4:-62067240 | None:intergenic |
| TGTTGACAATGTGCCATGTT+TGG | 0.446795 | 8.4:-62068439 | None:intergenic |
| TTGGAGGACATCGGCGTTGA+CGG | 0.446845 | 8.4:-62067412 | None:intergenic |
| AGGAGGCATGGTGAGGATTG+AGG | 0.447068 | 8.4:-62067356 | None:intergenic |
| AGGATTGGGTTGGAGGATGA+AGG | 0.451140 | 8.4:-62067274 | None:intergenic |
| GACCATGAAGGAATACCTTT+GGG | 0.452835 | 8.4:-62067239 | None:intergenic |
| AAAGATTGGAATTGTTGGTA+TGG | 0.453340 | 8.4:+62068253 | MS.gene87846:CDS |
| ATTGTTGGTATGGGAAGAAT+TGG | 0.461025 | 8.4:+62068263 | MS.gene87846:CDS |
| CAAAGAAGTCATGTTGGCAT+TGG | 0.461896 | 8.4:+62068460 | MS.gene87846:CDS |
| AAAGAAGTCATGTTGGCATT+GGG | 0.462215 | 8.4:+62068461 | MS.gene87846:CDS |
| TGTGAGAAGGATTGGGTTGG+AGG | 0.462813 | 8.4:-62067281 | None:intergenic |
| TGGAAATTGTGAGAAGGATT+GGG | 0.463593 | 8.4:-62067288 | None:intergenic |
| GAGATCAATATGATCAGTTC+CGG | 0.464182 | 8.4:-62067472 | None:intergenic |
| GAAGCTGTCTTCTCAAGAAC+CGG | 0.468027 | 8.4:-62067614 | None:intergenic |
| GGAGGAATTATAGTGAATGT+TGG | 0.468232 | 8.4:+62068488 | MS.gene87846:CDS |
| GATGATGAGATTGGAGGTGC+TGG | 0.475466 | 8.4:+62068557 | MS.gene87846:CDS |
| TATGATCAGTTCCGGCGCTA+GGG | 0.486905 | 8.4:-62067464 | None:intergenic |
| ATATGATCAGTTCCGGCGCT+AGG | 0.495157 | 8.4:-62067465 | None:intergenic |
| GACAATAGCGGCAATGGAGG+AGG | 0.501959 | 8.4:-62067373 | None:intergenic |
| GTCATGTTGGCATTGGGAAA+AGG | 0.502044 | 8.4:+62068467 | MS.gene87846:CDS |
| CATTGGTATCTGCCAACTAG+TGG | 0.503646 | 8.4:+62068682 | MS.gene87846:CDS |
| GTGGCTTTGTTGGTTGATGT+TGG | 0.505017 | 8.4:+62067570 | MS.gene87846:CDS |
| CGTCGCGGAATTCAGGTTGC+CGG | 0.509522 | 8.4:+62067507 | MS.gene87846:CDS |
| GAGGATTGAGGGATAAGAAT+TGG | 0.512540 | 8.4:-62067344 | None:intergenic |
| ATCAGCACCAACTATATGAC+TGG | 0.513016 | 8.4:-62068749 | None:intergenic |
| GGAGAGGAGGATGAGAAGAA+GGG | 0.517048 | 8.4:-62067320 | None:intergenic |
| AAGATTGGAATTGTTGGTAT+GGG | 0.525390 | 8.4:+62068254 | MS.gene87846:CDS |
| GGAGGGCGGGGAGAAGTTGG+AGG | 0.527008 | 8.4:-62067428 | None:intergenic |
| GCCGCTATTGTCTGTATCGT+CGG | 0.532819 | 8.4:+62067384 | MS.gene87846:CDS |
| CTTTGTTGGTTGATGTTGGT+AGG | 0.535021 | 8.4:+62067574 | MS.gene87846:CDS |
| GGAAGATTTCAGCTGCGGAC+CGG | 0.546304 | 8.4:+62067595 | MS.gene87846:CDS |
| AATTGTGAGAAGGATTGGGT+TGG | 0.550046 | 8.4:-62067284 | None:intergenic |
| GGAAAATTCCAAGATGCAGC+CGG | 0.551164 | 8.4:-62067639 | None:intergenic |
| GATACAGACAATAGCGGCAA+TGG | 0.551338 | 8.4:-62067379 | None:intergenic |
| CTTGTCTGCACCCCTAGCGC+CGG | 0.554679 | 8.4:+62067453 | MS.gene87846:CDS |
| GATAAGAATTGGTGGAGAGG+AGG | 0.555304 | 8.4:-62067333 | None:intergenic |
| ATTATAGTGAATGTTGGAAG+AGG | 0.555952 | 8.4:+62068494 | MS.gene87846:CDS |
| AAGATATGGAAATTGTGAGA+AGG | 0.559376 | 8.4:-62067294 | None:intergenic |
| CTTGAGAAGACAGCTTCAGC+CGG | 0.561720 | 8.4:+62067620 | MS.gene87846:CDS |
| TTGATTGATGATGAGATTGG+AGG | 0.572091 | 8.4:+62068551 | MS.gene87846:CDS |
| CGCTAGGGGTGCAGACAAGA+CGG | 0.572300 | 8.4:-62067449 | None:intergenic |
| GATTGAGGGATAAGAATTGG+TGG | 0.574137 | 8.4:-62067341 | None:intergenic |
| GTGAACTAAACGACCAAACA+TGG | 0.576631 | 8.4:+62068426 | MS.gene87846:CDS |
| AGGGATAAGAATTGGTGGAG+AGG | 0.577295 | 8.4:-62067336 | None:intergenic |
| AGATGTTGCTGATATGGCTG+TGG | 0.577311 | 8.4:+62067551 | MS.gene87846:CDS |
| ACACAGCTGCATGTGGTGAA+AGG | 0.589949 | 8.4:-62068643 | None:intergenic |
| ATGATCAGTTCCGGCGCTAG+GGG | 0.590591 | 8.4:-62067463 | None:intergenic |
| ACAGACAATAGCGGCAATGG+AGG | 0.591634 | 8.4:-62067376 | None:intergenic |
| AGAATTCAGGTGGACCATGA+AGG | 0.593598 | 8.4:-62067251 | None:intergenic |
| GGGGAGAAGTTGGAGGACAT+CGG | 0.595784 | 8.4:-62067421 | None:intergenic |
| CTCGTTGAGTGTCGACGTCG+CGG | 0.600196 | 8.4:+62067492 | MS.gene87846:CDS |
| TAGCGGCAATGGAGGAGGCA+TGG | 0.602465 | 8.4:-62067368 | None:intergenic |
| TGTCAACAAAGAAGTCATGT+TGG | 0.608970 | 8.4:+62068454 | MS.gene87846:CDS |
| AGAAAATAATAATCTCCCAA+AGG | 0.624465 | 8.4:+62067224 | MS.gene87846:CDS |
| ACAACATAAAATGAGTACAT+TGG | 0.629848 | 8.4:-62068405 | None:intergenic |
| TTGCAGACCTTAGAACCAAG+TGG | 0.630404 | 8.4:-62067660 | None:intergenic |
| GACTGGTGTTTCAGTTAACA+GGG | 0.631514 | 8.4:+62068228 | MS.gene87846:intron |
| TGGTAGGAAGATTTCAGCTG+CGG | 0.633217 | 8.4:+62067590 | MS.gene87846:CDS |
| AGGGGTGCAGACAAGACGGA+GGG | 0.634533 | 8.4:-62067445 | None:intergenic |
| ATGTTGGCATTGGGAAAAGG+AGG | 0.641097 | 8.4:+62068470 | MS.gene87846:CDS |
| TATATGACTGGACTAATCAG+AGG | 0.655652 | 8.4:-62068737 | None:intergenic |
| GCAATGGAGGAGGCATGGTG+AGG | 0.666359 | 8.4:-62067363 | None:intergenic |
| AGGATGAAGGAGAATTCAGG+TGG | 0.673115 | 8.4:-62067261 | None:intergenic |
| GAAGTAAACACAGCTGCATG+TGG | 0.680602 | 8.4:-62068650 | None:intergenic |
| TAGGGGTGCAGACAAGACGG+AGG | 0.685169 | 8.4:-62067446 | None:intergenic |
| GCCGACGATACAGACAATAG+CGG | 0.751275 | 8.4:-62067385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAGTAGTAATAATTT+AGG | + | chr8.4:62067745-62067764 | MS.gene87846:intron | 10.0% |
| !! | ATTGTAAAAATAAAATATTC+AGG | - | chr8.4:62067806-62067825 | None:intergenic | 10.0% |
| !!! | TAAGGTTAAATAAATATTTT+CGG | - | chr8.4:62068109-62068128 | None:intergenic | 10.0% |
| !!! | TATGAATTTTTTTTTTTTTG+TGG | - | chr8.4:62068074-62068093 | None:intergenic | 10.0% |
| !! | ATGTTAGTTGTAAATTTCTA+AGG | - | chr8.4:62068127-62068146 | None:intergenic | 20.0% |
| ! | ACAACATAAAATGAGTACAT+TGG | - | chr8.4:62068408-62068427 | None:intergenic | 25.0% |
| ! | AGAAAATAATAATCTCCCAA+AGG | + | chr8.4:62067224-62067243 | MS.gene87846:CDS | 25.0% |
| ! | GACAATGGATAATATATACA+AGG | + | chr8.4:62068026-62068045 | MS.gene87846:intron | 25.0% |
| ! | GCATAATATCATACAATTCT+AGG | + | chr8.4:62068321-62068340 | MS.gene87846:CDS | 25.0% |
| ! | TAAAAATAACAGTACGATGT+CGG | - | chr8.4:62067963-62067982 | None:intergenic | 25.0% |
| !! | AAGAACTCTTTAGGAATATT+AGG | - | chr8.4:62068605-62068624 | None:intergenic | 25.0% |
| !! | TGGGAGATTATTATTTTCTT+GGG | - | chr8.4:62067223-62067242 | None:intergenic | 25.0% |
| !! | TTGGGAGATTATTATTTTCT+TGG | - | chr8.4:62067224-62067243 | None:intergenic | 25.0% |
| !! | TTTGATAACAAATATGTGAC+TGG | + | chr8.4:62068211-62068230 | MS.gene87846:intron | 25.0% |
| AAAGATTGGAATTGTTGGTA+TGG | + | chr8.4:62068253-62068272 | MS.gene87846:CDS | 30.0% | |
| AAGATATGGAAATTGTGAGA+AGG | - | chr8.4:62067297-62067316 | None:intergenic | 30.0% | |
| AAGATTGGAATTGTTGGTAT+GGG | + | chr8.4:62068254-62068273 | MS.gene87846:CDS | 30.0% | |
| AATAAATAAACACGACGACT+TGG | - | chr8.4:62067843-62067862 | None:intergenic | 30.0% | |
| ATACTTGTAGCTAGTATGAA+TGG | - | chr8.4:62068182-62068201 | None:intergenic | 30.0% | |
| ATTATAGTGAATGTTGGAAG+AGG | + | chr8.4:62068494-62068513 | MS.gene87846:CDS | 30.0% | |
| TAGGTGATACACAAGATATT+CGG | + | chr8.4:62067764-62067783 | MS.gene87846:intron | 30.0% | |
| TCCAATGAAAAGAACTCTTT+AGG | - | chr8.4:62068614-62068633 | None:intergenic | 30.0% | |
| TTTACTTCAGAGTCTTTCAT+TGG | + | chr8.4:62068665-62068684 | MS.gene87846:CDS | 30.0% | |
| ! | TCCTAAAGAGTTCTTTTCAT+TGG | + | chr8.4:62068610-62068629 | MS.gene87846:CDS | 30.0% |
| !! | TGTTTGATTGATGATGAGAT+TGG | + | chr8.4:62068548-62068567 | MS.gene87846:CDS | 30.0% |
| !!! | TTTTTTTTTTGTGGTGTCTG+AGG | - | chr8.4:62068065-62068084 | None:intergenic | 30.0% |
| AAAGAAGTCATGTTGGCATT+GGG | + | chr8.4:62068461-62068480 | MS.gene87846:CDS | 35.0% | |
| AACTCAGTTGTTAAGGACAA+TGG | + | chr8.4:62068011-62068030 | MS.gene87846:intron | 35.0% | |
| AGAAAAAAGATTTCCAGCTC+CGG | - | chr8.4:62067529-62067548 | None:intergenic | 35.0% | |
| ATGGAAATTGTGAGAAGGAT+TGG | - | chr8.4:62067292-62067311 | None:intergenic | 35.0% | |
| ATTGTTGGTATGGGAAGAAT+TGG | + | chr8.4:62068263-62068282 | MS.gene87846:CDS | 35.0% | |
| CAGTTAACAGGGAAAAAGAT+TGG | + | chr8.4:62068239-62068258 | MS.gene87846:intron | 35.0% | |
| CCAACTAGTGGAACAAAATT+TGG | + | chr8.4:62068694-62068713 | MS.gene87846:CDS | 35.0% | |
| GAGATCAATATGATCAGTTC+CGG | - | chr8.4:62067475-62067494 | None:intergenic | 35.0% | |
| GGAGGAATTATAGTGAATGT+TGG | + | chr8.4:62068488-62068507 | MS.gene87846:CDS | 35.0% | |
| GGGAAAAAGATTGGAATTGT+TGG | + | chr8.4:62068248-62068267 | MS.gene87846:CDS | 35.0% | |
| TATATGACTGGACTAATCAG+AGG | - | chr8.4:62068740-62068759 | None:intergenic | 35.0% | |
| TGGAAATTGTGAGAAGGATT+GGG | - | chr8.4:62067291-62067310 | None:intergenic | 35.0% | |
| TGTCAACAAAGAAGTCATGT+TGG | + | chr8.4:62068454-62068473 | MS.gene87846:CDS | 35.0% | |
| TGTCCTTAACAACTGAGTTA+CGG | - | chr8.4:62068010-62068029 | None:intergenic | 35.0% | |
| TTGCTTCACATGATACAGAT+TGG | + | chr8.4:62067895-62067914 | MS.gene87846:intron | 35.0% | |
| ! | CCAAATTTTGTTCCACTAGT+TGG | - | chr8.4:62068697-62068716 | None:intergenic | 35.0% |
| ! | GAGAAGAAGGGTTTAAGATA+TGG | - | chr8.4:62067311-62067330 | None:intergenic | 35.0% |
| ! | TTCTGAAGATGTTGCTGATA+TGG | + | chr8.4:62067545-62067564 | MS.gene87846:CDS | 35.0% |
| !! | TTGATTGATGATGAGATTGG+AGG | + | chr8.4:62068551-62068570 | MS.gene87846:CDS | 35.0% |
| !!! | GAATTTTCCACTTGGTTCTA+AGG | + | chr8.4:62067653-62067672 | MS.gene87846:CDS | 35.0% |
| AATTGTGAGAAGGATTGGGT+TGG | - | chr8.4:62067287-62067306 | None:intergenic | 40.0% | |
| AGGTGCTCTCATTGATGAAA+AGG | + | chr8.4:62068514-62068533 | MS.gene87846:CDS | 40.0% | |
| CAAAGAAGTCATGTTGGCAT+TGG | + | chr8.4:62068460-62068479 | MS.gene87846:CDS | 40.0% | |
| GACCATGAAGGAATACCTTT+GGG | - | chr8.4:62067242-62067261 | None:intergenic | 40.0% | |
| GACTGGTGTTTCAGTTAACA+GGG | + | chr8.4:62068228-62068247 | MS.gene87846:intron | 40.0% | |
| GAGGATTGAGGGATAAGAAT+TGG | - | chr8.4:62067347-62067366 | None:intergenic | 40.0% | |
| GATTGAGGGATAAGAATTGG+TGG | - | chr8.4:62067344-62067363 | None:intergenic | 40.0% | |
| GTGAACTAAACGACCAAACA+TGG | + | chr8.4:62068426-62068445 | MS.gene87846:CDS | 40.0% | |
| TCTCCGTAACTCAGTTGTTA+AGG | + | chr8.4:62068004-62068023 | MS.gene87846:intron | 40.0% | |
| TGACTGGTGTTTCAGTTAAC+AGG | + | chr8.4:62068227-62068246 | MS.gene87846:intron | 40.0% | |
| TGTTGACAATGTGCCATGTT+TGG | - | chr8.4:62068442-62068461 | None:intergenic | 40.0% | |
| ! | CTTTGTTGGTTGATGTTGGT+AGG | + | chr8.4:62067574-62067593 | MS.gene87846:CDS | 40.0% |
| ! | GCATCTTGGAATTTTCCACT+TGG | + | chr8.4:62067645-62067664 | MS.gene87846:CDS | 40.0% |
| AGAATTCAGGTGGACCATGA+AGG | - | chr8.4:62067254-62067273 | None:intergenic | 45.0% | |
| AGATGTTGCTGATATGGCTG+TGG | + | chr8.4:62067551-62067570 | MS.gene87846:CDS | 45.0% | |
| AGGATGAAGGAGAATTCAGG+TGG | - | chr8.4:62067264-62067283 | None:intergenic | 45.0% | |
| AGGGATAAGAATTGGTGGAG+AGG | - | chr8.4:62067339-62067358 | None:intergenic | 45.0% | |
| CATTGGTATCTGCCAACTAG+TGG | + | chr8.4:62068682-62068701 | MS.gene87846:CDS | 45.0% | |
| GAAGCTGTCTTCTCAAGAAC+CGG | - | chr8.4:62067617-62067636 | None:intergenic | 45.0% | |
| GAAGTAAACACAGCTGCATG+TGG | - | chr8.4:62068653-62068672 | None:intergenic | 45.0% | |
| GATAAGAATTGGTGGAGAGG+AGG | - | chr8.4:62067336-62067355 | None:intergenic | 45.0% | |
| GATACAGACAATAGCGGCAA+TGG | - | chr8.4:62067382-62067401 | None:intergenic | 45.0% | |
| GGAAAATTCCAAGATGCAGC+CGG | - | chr8.4:62067642-62067661 | None:intergenic | 45.0% | |
| GGACCATGAAGGAATACCTT+TGG | - | chr8.4:62067243-62067262 | None:intergenic | 45.0% | |
| TGGAGGATGAAGGAGAATTC+AGG | - | chr8.4:62067267-62067286 | None:intergenic | 45.0% | |
| TGGTAGGAAGATTTCAGCTG+CGG | + | chr8.4:62067590-62067609 | MS.gene87846:CDS | 45.0% | |
| TTGCAGACCTTAGAACCAAG+TGG | - | chr8.4:62067663-62067682 | None:intergenic | 45.0% | |
| TTGGCTCAGAAGTCGCAAAA+AGG | + | chr8.4:62068282-62068301 | MS.gene87846:CDS | 45.0% | |
| ! | ATGTTGGCATTGGGAAAAGG+AGG | + | chr8.4:62068470-62068489 | MS.gene87846:CDS | 45.0% |
| ! | GTCATGTTGGCATTGGGAAA+AGG | + | chr8.4:62068467-62068486 | MS.gene87846:CDS | 45.0% |
| !! | CTCCCAAAGGTATTCCTTCA+TGG | + | chr8.4:62067237-62067256 | MS.gene87846:CDS | 45.0% |
| !! | GTGGCTTTGTTGGTTGATGT+TGG | + | chr8.4:62067570-62067589 | MS.gene87846:CDS | 45.0% |
| !! | TGATATGGCTGTGGCTTTGT+TGG | + | chr8.4:62067560-62067579 | MS.gene87846:CDS | 45.0% |
| ACACAGCTGCATGTGGTGAA+AGG | - | chr8.4:62068646-62068665 | None:intergenic | 50.0% | |
| ACAGACAATAGCGGCAATGG+AGG | - | chr8.4:62067379-62067398 | None:intergenic | 50.0% | |
| ATATGATCAGTTCCGGCGCT+AGG | - | chr8.4:62067468-62067487 | None:intergenic | 50.0% | |
| CTTGAGAAGACAGCTTCAGC+CGG | + | chr8.4:62067620-62067639 | MS.gene87846:CDS | 50.0% | |
| GCCGACGATACAGACAATAG+CGG | - | chr8.4:62067388-62067407 | None:intergenic | 50.0% | |
| GCCGCTATTGTCTGTATCGT+CGG | + | chr8.4:62067384-62067403 | MS.gene87846:CDS | 50.0% | |
| GGAGAGGAGGATGAGAAGAA+GGG | - | chr8.4:62067323-62067342 | None:intergenic | 50.0% | |
| TATGATCAGTTCCGGCGCTA+GGG | - | chr8.4:62067467-62067486 | None:intergenic | 50.0% | |
| TGGAGAGGAGGATGAGAAGA+AGG | - | chr8.4:62067324-62067343 | None:intergenic | 50.0% | |
| ! | GATGATGAGATTGGAGGTGC+TGG | + | chr8.4:62068557-62068576 | MS.gene87846:CDS | 50.0% |
| !! | AGGATTGGGTTGGAGGATGA+AGG | - | chr8.4:62067277-62067296 | None:intergenic | 50.0% |
| !! | TGTGAGAAGGATTGGGTTGG+AGG | - | chr8.4:62067284-62067303 | None:intergenic | 50.0% |
| ATGATCAGTTCCGGCGCTAG+GGG | - | chr8.4:62067466-62067485 | None:intergenic | 55.0% | |
| GACAATAGCGGCAATGGAGG+AGG | - | chr8.4:62067376-62067395 | None:intergenic | 55.0% | |
| GGAAGATTTCAGCTGCGGAC+CGG | + | chr8.4:62067595-62067614 | MS.gene87846:CDS | 55.0% | |
| GGGGAGAAGTTGGAGGACAT+CGG | - | chr8.4:62067424-62067443 | None:intergenic | 55.0% | |
| ! | AGGAGGCATGGTGAGGATTG+AGG | - | chr8.4:62067359-62067378 | None:intergenic | 55.0% |
| ! | GGAGGCATGGTGAGGATTGA+GGG | - | chr8.4:62067358-62067377 | None:intergenic | 55.0% |
| ! | TTGGAGGACATCGGCGTTGA+CGG | - | chr8.4:62067415-62067434 | None:intergenic | 55.0% |
| AGCTTCAGCCGGCTGCATCT+TGG | + | chr8.4:62067631-62067650 | MS.gene87846:CDS | 60.0% | |
| TAGCGGCAATGGAGGAGGCA+TGG | - | chr8.4:62067371-62067390 | None:intergenic | 60.0% | |
| ! | AGGGGTGCAGACAAGACGGA+GGG | - | chr8.4:62067448-62067467 | None:intergenic | 60.0% |
| ! | CGCTAGGGGTGCAGACAAGA+CGG | - | chr8.4:62067452-62067471 | None:intergenic | 60.0% |
| ! | GCAATGGAGGAGGCATGGTG+AGG | - | chr8.4:62067366-62067385 | None:intergenic | 60.0% |
| ! | GTGTCGACGTCGCGGAATTC+AGG | + | chr8.4:62067500-62067519 | MS.gene87846:CDS | 60.0% |
| ! | TAGGGGTGCAGACAAGACGG+AGG | - | chr8.4:62067449-62067468 | None:intergenic | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+CGG | + | chr8.4:62067507-62067526 | MS.gene87846:CDS | 60.0% |
| !! | CTCGTTGAGTGTCGACGTCG+CGG | + | chr8.4:62067492-62067511 | MS.gene87846:CDS | 60.0% |
| !! | GGAATTCAGGTTGCCGGAGC+TGG | + | chr8.4:62067513-62067532 | MS.gene87846:CDS | 60.0% |
| CTTGTCTGCACCCCTAGCGC+CGG | + | chr8.4:62067453-62067472 | MS.gene87846:CDS | 65.0% | |
| GGTGCAGACAAGACGGAGGG+CGG | - | chr8.4:62067445-62067464 | None:intergenic | 65.0% | |
| GTGCAGACAAGACGGAGGGC+GGG | - | chr8.4:62067444-62067463 | None:intergenic | 65.0% | |
| TGCAGACAAGACGGAGGGCG+GGG | - | chr8.4:62067443-62067462 | None:intergenic | 65.0% | |
| GACGGAGGGCGGGGAGAAGT+TGG | - | chr8.4:62067434-62067453 | None:intergenic | 70.0% | |
| GGAGGGCGGGGAGAAGTTGG+AGG | - | chr8.4:62067431-62067450 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 62067189 | 62068760 | 62067189 | ID=MS.gene87846 |
| chr8.4 | mRNA | 62067189 | 62068760 | 62067189 | ID=MS.gene87846.t1;Parent=MS.gene87846 |
| chr8.4 | exon | 62067189 | 62067674 | 62067189 | ID=MS.gene87846.t1.exon1;Parent=MS.gene87846.t1 |
| chr8.4 | CDS | 62067189 | 62067674 | 62067189 | ID=cds.MS.gene87846.t1;Parent=MS.gene87846.t1 |
| chr8.4 | exon | 62068242 | 62068760 | 62068242 | ID=MS.gene87846.t1.exon2;Parent=MS.gene87846.t1 |
| chr8.4 | CDS | 62068242 | 62068760 | 62068242 | ID=cds.MS.gene87846.t1;Parent=MS.gene87846.t1 |
| Gene Sequence |
| Protein sequence |
