Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87848.t1 | XP_013444993.1 | 94.2 | 326 | 19 | 0 | 1 | 326 | 1 | 326 | 7.60E-171 | 609.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87848.t1 | Q9LE33 | 49.4 | 324 | 151 | 4 | 6 | 324 | 7 | 322 | 9.6e-82 | 305.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87848.t1 | A0A072TQA0 | 94.2 | 326 | 19 | 0 | 1 | 326 | 1 | 326 | 5.5e-171 | 609.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20783 | MS.gene87848 | PPI |
| MS.gene87848 | MS.gene33396 | PPI |
| MS.gene068259 | MS.gene87848 | PPI |
| MS.gene030057 | MS.gene87848 | PPI |
| MS.gene062351 | MS.gene87848 | PPI |
| MS.gene87848 | MS.gene24947 | PPI |
| MS.gene87848 | MS.gene76198 | PPI |
| MS.gene87848 | MS.gene37513 | PPI |
| MS.gene87848 | MS.gene068262 | PPI |
| MS.gene87848 | MS.gene07262 | PPI |
| MS.gene74946 | MS.gene87848 | PPI |
| MS.gene87848 | MS.gene33394 | PPI |
| MS.gene33395 | MS.gene87848 | PPI |
| MS.gene87848 | MS.gene20834 | PPI |
| MS.gene029300 | MS.gene87848 | PPI |
| MS.gene24945 | MS.gene87848 | PPI |
| MS.gene017129 | MS.gene87848 | PPI |
| MS.gene038363 | MS.gene87848 | PPI |
| MS.gene24946 | MS.gene87848 | PPI |
| MS.gene87848 | MS.gene065032 | PPI |
| MS.gene87848 | MS.gene068263 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87848.t1 | MTR_8g033390 | 94.172 | 326 | 19 | 0 | 1 | 326 | 1 | 326 | 0.0 | 632 |
| MS.gene87848.t1 | MTR_8g033400 | 58.125 | 320 | 132 | 2 | 3 | 322 | 15 | 332 | 7.85e-134 | 384 |
| MS.gene87848.t1 | MTR_8g033410 | 57.547 | 318 | 134 | 1 | 5 | 322 | 9 | 325 | 6.90e-133 | 381 |
| MS.gene87848.t1 | MTR_7g075830 | 50.000 | 304 | 135 | 6 | 36 | 324 | 15 | 316 | 1.80e-96 | 288 |
| MS.gene87848.t1 | MTR_4g012960 | 44.840 | 281 | 147 | 2 | 42 | 322 | 37 | 309 | 2.31e-89 | 270 |
| MS.gene87848.t1 | MTR_4g013090 | 43.871 | 310 | 154 | 5 | 20 | 322 | 16 | 312 | 3.56e-89 | 270 |
| MS.gene87848.t1 | MTR_4g013100 | 46.454 | 282 | 148 | 2 | 41 | 322 | 35 | 313 | 1.24e-88 | 268 |
| MS.gene87848.t1 | MTR_2g101840 | 44.695 | 311 | 155 | 6 | 18 | 322 | 14 | 313 | 5.40e-78 | 241 |
| MS.gene87848.t1 | MTR_4g013135 | 44.912 | 285 | 148 | 3 | 41 | 322 | 34 | 312 | 1.42e-73 | 229 |
| MS.gene87848.t1 | MTR_3g005970 | 27.372 | 274 | 174 | 6 | 65 | 318 | 107 | 375 | 1.99e-27 | 110 |
| MS.gene87848.t1 | MTR_4g005880 | 30.189 | 265 | 166 | 6 | 76 | 326 | 152 | 411 | 4.73e-25 | 105 |
| MS.gene87848.t1 | MTR_1g107480 | 29.057 | 265 | 169 | 6 | 76 | 326 | 119 | 378 | 4.95e-24 | 102 |
| MS.gene87848.t1 | MTR_6g007170 | 28.462 | 260 | 169 | 6 | 65 | 313 | 111 | 364 | 2.72e-22 | 96.7 |
| MS.gene87848.t1 | MTR_1g112510 | 27.344 | 256 | 158 | 6 | 83 | 312 | 94 | 347 | 2.22e-21 | 94.0 |
| MS.gene87848.t1 | MTR_6g007175 | 27.451 | 255 | 159 | 6 | 65 | 313 | 80 | 314 | 3.34e-18 | 84.3 |
| MS.gene87848.t1 | MTR_7g078990 | 26.638 | 229 | 153 | 4 | 98 | 315 | 97 | 321 | 2.95e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87848.t1 | AT2G45630 | 50.154 | 325 | 151 | 5 | 3 | 322 | 19 | 337 | 7.11e-108 | 318 |
| MS.gene87848.t1 | AT1G12550 | 49.383 | 324 | 151 | 4 | 6 | 324 | 7 | 322 | 5.10e-105 | 310 |
| MS.gene87848.t1 | AT1G79870 | 43.711 | 318 | 165 | 5 | 8 | 322 | 6 | 312 | 1.52e-82 | 253 |
| MS.gene87848.t1 | AT1G79870 | 40.635 | 315 | 160 | 5 | 8 | 322 | 6 | 293 | 5.86e-72 | 225 |
| MS.gene87848.t1 | AT2G45630 | 42.857 | 154 | 78 | 4 | 3 | 152 | 19 | 166 | 9.70e-31 | 115 |
| MS.gene87848.t1 | AT1G72190 | 26.518 | 313 | 193 | 8 | 16 | 306 | 57 | 354 | 1.52e-27 | 110 |
| MS.gene87848.t1 | AT1G17745 | 29.021 | 286 | 183 | 8 | 56 | 326 | 125 | 405 | 5.98e-27 | 111 |
| MS.gene87848.t1 | AT4G34200 | 30.682 | 264 | 166 | 6 | 76 | 326 | 125 | 384 | 6.68e-26 | 108 |
| MS.gene87848.t1 | AT5G28310 | 33.679 | 193 | 76 | 3 | 131 | 322 | 91 | 232 | 4.18e-24 | 99.0 |
| MS.gene87848.t1 | AT3G19480 | 31.395 | 258 | 158 | 8 | 76 | 319 | 110 | 362 | 7.16e-24 | 102 |
| MS.gene87848.t1 | AT1G17745 | 26.623 | 308 | 189 | 8 | 56 | 326 | 125 | 432 | 6.12e-23 | 99.8 |
| MS.gene87848.t1 | AT5G14780 | 27.869 | 244 | 159 | 6 | 81 | 313 | 111 | 348 | 8.49e-22 | 95.1 |
| MS.gene87848.t1 | AT5G14780 | 27.869 | 244 | 159 | 6 | 81 | 313 | 99 | 336 | 9.08e-22 | 94.7 |
| MS.gene87848.t1 | AT5G14780 | 27.692 | 260 | 171 | 6 | 65 | 313 | 109 | 362 | 1.38e-21 | 94.7 |
| MS.gene87848.t1 | AT1G68010 | 27.132 | 258 | 167 | 3 | 83 | 319 | 94 | 351 | 2.48e-19 | 87.8 |
| MS.gene87848.t1 | AT1G68010 | 27.165 | 254 | 161 | 4 | 83 | 312 | 94 | 347 | 3.01e-19 | 87.8 |
| MS.gene87848.t1 | AT1G68010 | 27.059 | 255 | 161 | 5 | 83 | 312 | 94 | 348 | 1.16e-17 | 83.2 |
| MS.gene87848.t1 | AT1G01510 | 26.609 | 233 | 152 | 5 | 98 | 315 | 105 | 333 | 4.80e-14 | 73.2 |
Find 79 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTGAGGGTTTGGGGTTT+AGG | 0.178158 | 8.4:-62183100 | None:intergenic |
| CTTCCAAAAGTCCTTGTTCT+TGG | 0.242036 | 8.4:+62183023 | MS.gene87848:CDS |
| CAGTGATAGGTCTGAGGGTT+TGG | 0.262184 | 8.4:-62183108 | None:intergenic |
| AGTGATAGGTCTGAGGGTTT+GGG | 0.262379 | 8.4:-62183107 | None:intergenic |
| GATCCTTGGGATTTCTCTCT+TGG | 0.275503 | 8.4:+62183434 | MS.gene87848:CDS |
| TTGTTGATGGGTTGTGGTTG+TGG | 0.280986 | 8.4:-62183148 | None:intergenic |
| TATAAACAACGATGTCCTTT+TGG | 0.311089 | 8.4:+62184694 | MS.gene87848:CDS |
| CTCGGAGGATGTGGCTGATA+TGG | 0.313435 | 8.4:+62183334 | MS.gene87848:CDS |
| CGTGTTGGAATTGTTGGATT+AGG | 0.316679 | 8.4:+62184494 | MS.gene87848:CDS |
| GTGCCGTCGTCGCGGAATTC+AGG | 0.318436 | 8.4:+62183289 | MS.gene87848:CDS |
| ATTGTTGGATTAGGAAATAT+TGG | 0.323585 | 8.4:+62184503 | MS.gene87848:CDS |
| CGCGGGAACGTTCTGATCCT+TGG | 0.332741 | 8.4:+62183420 | MS.gene87848:CDS |
| GGCAAGCGTGTTGGAATTGT+TGG | 0.340794 | 8.4:+62184488 | MS.gene87848:CDS |
| ATATGCAGCGCTACAGAATA+TGG | 0.355416 | 8.4:-62183177 | None:intergenic |
| ACAATTGATCAAGTGTTTGA+TGG | 0.359013 | 8.4:+62184775 | MS.gene87848:CDS |
| CGGGAATTGTTGATGGGTTG+TGG | 0.367100 | 8.4:-62183154 | None:intergenic |
| CGCGACGACGGCACTCATTA+AGG | 0.372310 | 8.4:-62183280 | None:intergenic |
| GGACCAAGAACAAGGACTTT+TGG | 0.372646 | 8.4:-62183026 | None:intergenic |
| TGATATGGCAGTGGCGTTGC+TGG | 0.375670 | 8.4:+62183349 | MS.gene87848:CDS |
| AGAAATTGCTGGTGCTGGTT+TGG | 0.382247 | 8.4:+62184802 | MS.gene87848:CDS |
| GAAGGGTTTATTGTAAATGT+TGG | 0.390642 | 8.4:+62184728 | MS.gene87848:CDS |
| TGTTGATGGGTTGTGGTTGT+GGG | 0.397875 | 8.4:-62183147 | None:intergenic |
| GGATTTCTCTCTTGGATACA+AGG | 0.406951 | 8.4:+62183442 | MS.gene87848:CDS |
| GCGGGAACGTTCTGATCCTT+GGG | 0.421555 | 8.4:+62183421 | MS.gene87848:CDS |
| TGTTTATAATGTGTCGTGTT+TGG | 0.423029 | 8.4:-62184679 | None:intergenic |
| GGAATTCAGGTTGCTGGTGC+TGG | 0.432787 | 8.4:+62183302 | MS.gene87848:CDS |
| AATATGGCGGGAATTGTTGA+TGG | 0.436700 | 8.4:-62183161 | None:intergenic |
| CGTCGCGGAATTCAGGTTGC+TGG | 0.444309 | 8.4:+62183296 | MS.gene87848:CDS |
| TCTATAACATTGGAATAGAA+AGG | 0.449303 | 8.4:-62184608 | None:intergenic |
| AACTTCACTGGACTAATTAG+TGG | 0.456808 | 8.4:-62184977 | None:intergenic |
| ACTAATTAGTCCAGTGAAGT+TGG | 0.461367 | 8.4:+62184979 | MS.gene87848:CDS |
| GCATGAATTGTTGCAGTGAT+AGG | 0.471646 | 8.4:-62183121 | None:intergenic |
| TTTATTGTAAATGTTGGAAG+AGG | 0.472073 | 8.4:+62184734 | MS.gene87848:CDS |
| ATTGTAAATGTTGGAAGAGG+TGG | 0.499918 | 8.4:+62184737 | MS.gene87848:CDS |
| TTTGAGAACGTCGGTAGTGA+TGG | 0.509803 | 8.4:-62183201 | None:intergenic |
| GTGATAGGTCTGAGGGTTTG+GGG | 0.518270 | 8.4:-62183106 | None:intergenic |
| GCTCTTTGCAATGGATAATG+TGG | 0.520923 | 8.4:+62184859 | MS.gene87848:CDS |
| CTTGTTGTCACCTCCAGTGT+TGG | 0.525756 | 8.4:+62183242 | MS.gene87848:CDS |
| AGTTACTCAACCAACTTCAC+TGG | 0.527156 | 8.4:-62184989 | None:intergenic |
| ATCAAATGACTCGAGTCGCT+TGG | 0.527432 | 8.4:-62184537 | None:intergenic |
| AGTTGCAAGATCTATAACAT+TGG | 0.528808 | 8.4:-62184618 | None:intergenic |
| TTGATCAAGTGTTTGATGGA+AGG | 0.551467 | 8.4:+62184779 | MS.gene87848:CDS |
| TAGTTATCAGGCAAGCGTGT+TGG | 0.555079 | 8.4:+62184479 | MS.gene87848:intron |
| GTGAGAGTAGAGTGATTCGA+AGG | 0.555679 | 8.4:-62183066 | None:intergenic |
| GAAGGAGAAATTGCTGGTGC+TGG | 0.558068 | 8.4:+62184797 | MS.gene87848:CDS |
| CTATAACATTGGAATAGAAA+GGG | 0.560035 | 8.4:-62184607 | None:intergenic |
| AGTTTGTGTGAACTTGTGGC+AGG | 0.560332 | 8.4:+62184926 | MS.gene87848:CDS |
| ACAGTAAAAGCTGCAGAATG+TGG | 0.564794 | 8.4:-62184890 | None:intergenic |
| AACTTCTAGCGACGCACTTG+TGG | 0.568567 | 8.4:+62184637 | MS.gene87848:CDS |
| TGTTGCAGTGATAGGTCTGA+GGG | 0.578234 | 8.4:-62183113 | None:intergenic |
| TGATGAAAAGCTCTTTGCAA+TGG | 0.579661 | 8.4:+62184850 | MS.gene87848:CDS |
| ACTGAGTTTGTGTGAACTTG+TGG | 0.581154 | 8.4:+62184922 | MS.gene87848:CDS |
| AAGGTTGAGAAACATGTTGG+TGG | 0.583540 | 8.4:-62183047 | None:intergenic |
| TTGATGGAAGGAGAAATTGC+TGG | 0.584407 | 8.4:+62184791 | MS.gene87848:CDS |
| AATGTGATCAGTTCCAACAC+TGG | 0.588992 | 8.4:-62183255 | None:intergenic |
| CAACCTGAATTCCGCGACGA+CGG | 0.590542 | 8.4:-62183292 | None:intergenic |
| ATCGATATGTGAGGATGCCG+CGG | 0.598105 | 8.4:+62183402 | MS.gene87848:CDS |
| GCAGCGCTACAGAATATGGC+GGG | 0.604474 | 8.4:-62183173 | None:intergenic |
| GGTGACAACAAGGCTGAGCG+AGG | 0.616021 | 8.4:-62183231 | None:intergenic |
| TCGATATGTGAGGATGCCGC+GGG | 0.623106 | 8.4:+62183403 | MS.gene87848:CDS |
| CGTTGCTGGTTGCTGTCATG+AGG | 0.623618 | 8.4:+62183363 | MS.gene87848:CDS |
| ATGTTGGTGGACCAAGAACA+AGG | 0.625486 | 8.4:-62183034 | None:intergenic |
| TGGATTAGGAAATATTGGCA+TGG | 0.625656 | 8.4:+62184508 | MS.gene87848:CDS |
| GGATGTGGCTGATATGGCAG+TGG | 0.625732 | 8.4:+62183340 | MS.gene87848:CDS |
| CAACACTGGAGGTGACAACA+AGG | 0.627680 | 8.4:-62183241 | None:intergenic |
| TTGTTGCAGTGATAGGTCTG+AGG | 0.639638 | 8.4:-62183114 | None:intergenic |
| CTTAATGAGTGCCGTCGTCG+CGG | 0.641768 | 8.4:+62183281 | MS.gene87848:CDS |
| TCGAAGGTTGAGAAACATGT+TGG | 0.643036 | 8.4:-62183050 | None:intergenic |
| TATCCAAGAGAGAAATCCCA+AGG | 0.651234 | 8.4:-62183437 | None:intergenic |
| ATATGGCGGGAATTGTTGAT+GGG | 0.653479 | 8.4:-62183160 | None:intergenic |
| GTTTGTGTGAACTTGTGGCA+GGG | 0.655645 | 8.4:+62184927 | MS.gene87848:CDS |
| CATGAGGAAAGTGACGCTGG+CGG | 0.658328 | 8.4:+62183379 | MS.gene87848:CDS |
| GTGACAACAAGGCTGAGCGA+GGG | 0.665503 | 8.4:-62183230 | None:intergenic |
| TGTCATGAGGAAAGTGACGC+TGG | 0.666304 | 8.4:+62183376 | MS.gene87848:CDS |
| TGCAGCGCTACAGAATATGG+CGG | 0.674749 | 8.4:-62183174 | None:intergenic |
| GGGAAGAAGTTTGAGAACGT+CGG | 0.682809 | 8.4:-62183210 | None:intergenic |
| GTGATCAGTTCCAACACTGG+AGG | 0.687001 | 8.4:-62183252 | None:intergenic |
| CAAGGATCAGAACGTTCCCG+CGG | 0.701460 | 8.4:-62183419 | None:intergenic |
| CGCTGGCGGATCGATATGTG+AGG | 0.729494 | 8.4:+62183393 | MS.gene87848:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTTATCTAAAAAGA+AGG | - | chr8.4:62184016-62184035 | None:intergenic | 10.0% |
| !! | CAAGTTTATTAAAATAAATA+TGG | - | chr8.4:62183760-62183779 | None:intergenic | 10.0% |
| !! | ATGAGAAATTAAAATTTCTT+TGG | + | chr8.4:62184252-62184271 | MS.gene87848:intron | 15.0% |
| !! | CAAATAATTTCCTAAAATTA+GGG | + | chr8.4:62183621-62183640 | MS.gene87848:intron | 15.0% |
| !! | TCAAATAATTTCCTAAAATT+AGG | + | chr8.4:62183620-62183639 | MS.gene87848:intron | 15.0% |
| !!! | AAATTTTAATTTCTCATGAA+TGG | - | chr8.4:62184249-62184268 | None:intergenic | 15.0% |
| !!! | AATAGATACATATTTTTTAG+TGG | + | chr8.4:62183782-62183801 | MS.gene87848:intron | 15.0% |
| !!! | ATTTTTGTTTTATTTCTAGT+AGG | + | chr8.4:62184068-62184087 | MS.gene87848:intron | 15.0% |
| !! | AAATTAGTACACTCAAATTA+AGG | + | chr8.4:62183837-62183856 | MS.gene87848:intron | 20.0% |
| !!! | TTTTAACTGTTTTAGTTATC+AGG | + | chr8.4:62184467-62184486 | MS.gene87848:intron | 20.0% |
| ! | ATAATTTCCTAAAATTAGGG+TGG | + | chr8.4:62183624-62183643 | MS.gene87848:intron | 25.0% |
| ! | ATGAAGTATATATGTTGAAG+TGG | - | chr8.4:62184309-62184328 | None:intergenic | 25.0% |
| ! | CCATAGAAAATAAAGAAACA+GGG | + | chr8.4:62183962-62183981 | MS.gene87848:intron | 25.0% |
| ! | CTATAACATTGGAATAGAAA+GGG | - | chr8.4:62184610-62184629 | None:intergenic | 25.0% |
| ! | GTTGATATGAAGAAGAAAAA+AGG | - | chr8.4:62184159-62184178 | None:intergenic | 25.0% |
| ! | TCTATAACATTGGAATAGAA+AGG | - | chr8.4:62184611-62184630 | None:intergenic | 25.0% |
| ! | TTTATTGTAAATGTTGGAAG+AGG | + | chr8.4:62184734-62184753 | MS.gene87848:CDS | 25.0% |
| !! | ATTGTTGGATTAGGAAATAT+TGG | + | chr8.4:62184503-62184522 | MS.gene87848:CDS | 25.0% |
| !! | TGACAATTGACATTTTCAAA+AGG | + | chr8.4:62183560-62183579 | MS.gene87848:intron | 25.0% |
| ACAATTGATCAAGTGTTTGA+TGG | + | chr8.4:62184775-62184794 | MS.gene87848:CDS | 30.0% | |
| AGAATTGAACCTGAAATATG+AGG | + | chr8.4:62183860-62183879 | MS.gene87848:intron | 30.0% | |
| AGTTGCAAGATCTATAACAT+TGG | - | chr8.4:62184621-62184640 | None:intergenic | 30.0% | |
| ATACTCATAGAAATGAATCG+CGG | - | chr8.4:62183731-62183750 | None:intergenic | 30.0% | |
| CTAATTGATCCTCATATTTC+AGG | - | chr8.4:62183872-62183891 | None:intergenic | 30.0% | |
| GAAGGGTTTATTGTAAATGT+TGG | + | chr8.4:62184728-62184747 | MS.gene87848:CDS | 30.0% | |
| GCCATAGAAAATAAAGAAAC+AGG | + | chr8.4:62183961-62183980 | MS.gene87848:intron | 30.0% | |
| TCTTCTTCATATCAACACAT+AGG | + | chr8.4:62184163-62184182 | MS.gene87848:intron | 30.0% | |
| TGTTTATAATGTGTCGTGTT+TGG | - | chr8.4:62184682-62184701 | None:intergenic | 30.0% | |
| ! | AAATCACATTGAAAGTGCAT+AGG | + | chr8.4:62184391-62184410 | MS.gene87848:intron | 30.0% |
| ! | GAAGCTACAATTCTATGTTT+TGG | - | chr8.4:62184367-62184386 | None:intergenic | 30.0% |
| ! | TAGTAGGTTTTCTCTATTAG+AGG | + | chr8.4:62184084-62184103 | MS.gene87848:intron | 30.0% |
| ! | TATAAACAACGATGTCCTTT+TGG | + | chr8.4:62184694-62184713 | MS.gene87848:CDS | 30.0% |
| ! | TTTTGGCATTAGGAAAAGAA+GGG | + | chr8.4:62184711-62184730 | MS.gene87848:CDS | 30.0% |
| !!! | CCCTGTTTCTTTATTTTCTA+TGG | - | chr8.4:62183965-62183984 | None:intergenic | 30.0% |
| !!! | TGAAGTGGTTTTTTTATTGC+TGG | - | chr8.4:62184294-62184313 | None:intergenic | 30.0% |
| !!! | TTTTTTAGTGGTCTTGATCA+AGG | + | chr8.4:62183794-62183813 | MS.gene87848:intron | 30.0% |
| AACTTCACTGGACTAATTAG+TGG | - | chr8.4:62184980-62184999 | None:intergenic | 35.0% | |
| ACTAATTAGTCCAGTGAAGT+TGG | + | chr8.4:62184979-62184998 | MS.gene87848:CDS | 35.0% | |
| ATTGTAAATGTTGGAAGAGG+TGG | + | chr8.4:62184737-62184756 | MS.gene87848:CDS | 35.0% | |
| CAAAACCTTTAGTGCATGTT+TGG | - | chr8.4:62184446-62184465 | None:intergenic | 35.0% | |
| TAAAGTTATCCCGATCTTAC+CGG | + | chr8.4:62183901-62183920 | MS.gene87848:intron | 35.0% | |
| TGATGAAAAGCTCTTTGCAA+TGG | + | chr8.4:62184850-62184869 | MS.gene87848:CDS | 35.0% | |
| TTCTCTATTAGAGGTAGTGT+CGG | + | chr8.4:62184093-62184112 | MS.gene87848:intron | 35.0% | |
| TTGATCAAGTGTTTGATGGA+AGG | + | chr8.4:62184779-62184798 | MS.gene87848:CDS | 35.0% | |
| ! | AAGAGCTTTTCATCAACATG+AGG | - | chr8.4:62184845-62184864 | None:intergenic | 35.0% |
| ! | ATGTCTTTTGATGCTTAGAG+TGG | - | chr8.4:62184577-62184596 | None:intergenic | 35.0% |
| ! | CTTCTTTTCCTAATGCCAAA+AGG | - | chr8.4:62184712-62184731 | None:intergenic | 35.0% |
| ! | CTTTTGGCATTAGGAAAAGA+AGG | + | chr8.4:62184710-62184729 | MS.gene87848:CDS | 35.0% |
| ! | TGAAACACCACCCTAATTTT+AGG | - | chr8.4:62183634-62183653 | None:intergenic | 35.0% |
| ! | TGGATTAGGAAATATTGGCA+TGG | + | chr8.4:62184508-62184527 | MS.gene87848:CDS | 35.0% |
| AAGGTTGAGAAACATGTTGG+TGG | - | chr8.4:62183050-62183069 | None:intergenic | 40.0% | |
| AATGTGATCAGTTCCAACAC+TGG | - | chr8.4:62183258-62183277 | None:intergenic | 40.0% | |
| ACAGTAAAAGCTGCAGAATG+TGG | - | chr8.4:62184893-62184912 | None:intergenic | 40.0% | |
| ACTGAGTTTGTGTGAACTTG+TGG | + | chr8.4:62184922-62184941 | MS.gene87848:CDS | 40.0% | |
| AGTTTGAATCACGACAAGAG+AGG | - | chr8.4:62184134-62184153 | None:intergenic | 40.0% | |
| ATATGCAGCGCTACAGAATA+TGG | - | chr8.4:62183180-62183199 | None:intergenic | 40.0% | |
| CACAACCAAACATGCACTAA+AGG | + | chr8.4:62184438-62184457 | MS.gene87848:intron | 40.0% | |
| CGTGTTGGAATTGTTGGATT+AGG | + | chr8.4:62184494-62184513 | MS.gene87848:CDS | 40.0% | |
| CTTCCAAAAGTCCTTGTTCT+TGG | + | chr8.4:62183023-62183042 | MS.gene87848:CDS | 40.0% | |
| GCATGAATTGTTGCAGTGAT+AGG | - | chr8.4:62183124-62183143 | None:intergenic | 40.0% | |
| GCTCTTTGCAATGGATAATG+TGG | + | chr8.4:62184859-62184878 | MS.gene87848:CDS | 40.0% | |
| GGATTTCTCTCTTGGATACA+AGG | + | chr8.4:62183442-62183461 | MS.gene87848:CDS | 40.0% | |
| TATCCAAGAGAGAAATCCCA+AGG | - | chr8.4:62183440-62183459 | None:intergenic | 40.0% | |
| TCGAAGGTTGAGAAACATGT+TGG | - | chr8.4:62183053-62183072 | None:intergenic | 40.0% | |
| TTAGGGTGGTGTTTCAAGAA+TGG | + | chr8.4:62183638-62183657 | MS.gene87848:intron | 40.0% | |
| TTGATGGAAGGAGAAATTGC+TGG | + | chr8.4:62184791-62184810 | MS.gene87848:CDS | 40.0% | |
| ! | AACGATGTCCTTTTGGCATT+AGG | + | chr8.4:62184701-62184720 | MS.gene87848:CDS | 40.0% |
| ! | AATATGGCGGGAATTGTTGA+TGG | - | chr8.4:62183164-62183183 | None:intergenic | 40.0% |
| ! | ATATGGCGGGAATTGTTGAT+GGG | - | chr8.4:62183163-62183182 | None:intergenic | 40.0% |
| ! | CAAGAACAAGGACTTTTGGA+AGG | - | chr8.4:62183025-62183044 | None:intergenic | 40.0% |
| ! | TTTTCAGTCCTCTACTCTAC+TGG | - | chr8.4:62183678-62183697 | None:intergenic | 40.0% |
| !! | AAGGACTTTTGGAAGGTCTT+TGG | - | chr8.4:62183018-62183037 | None:intergenic | 40.0% |
| AAATATTAGTGTCTCGCCGC+CGG | - | chr8.4:62183923-62183942 | None:intergenic | 45.0% | |
| ACTGAAAATCCTCGTGTCAC+CGG | + | chr8.4:62183690-62183709 | MS.gene87848:intron | 45.0% | |
| AGTGATAGGTCTGAGGGTTT+GGG | - | chr8.4:62183110-62183129 | None:intergenic | 45.0% | |
| AGTTTGTGTGAACTTGTGGC+AGG | + | chr8.4:62184926-62184945 | MS.gene87848:CDS | 45.0% | |
| ATCAAATGACTCGAGTCGCT+TGG | - | chr8.4:62184540-62184559 | None:intergenic | 45.0% | |
| GATCCTTGGGATTTCTCTCT+TGG | + | chr8.4:62183434-62183453 | MS.gene87848:CDS | 45.0% | |
| GGGAAGAAGTTTGAGAACGT+CGG | - | chr8.4:62183213-62183232 | None:intergenic | 45.0% | |
| GGTGGTGTTTCAAGAATGGT+CGG | + | chr8.4:62183642-62183661 | MS.gene87848:intron | 45.0% | |
| GTGAGAGTAGAGTGATTCGA+AGG | - | chr8.4:62183069-62183088 | None:intergenic | 45.0% | |
| GTGGTGTTTCAAGAATGGTC+GGG | + | chr8.4:62183643-62183662 | MS.gene87848:intron | 45.0% | |
| GTTTGTGTGAACTTGTGGCA+GGG | + | chr8.4:62184927-62184946 | MS.gene87848:CDS | 45.0% | |
| TAGTTATCAGGCAAGCGTGT+TGG | + | chr8.4:62184479-62184498 | MS.gene87848:intron | 45.0% | |
| TGTTGCAGTGATAGGTCTGA+GGG | - | chr8.4:62183116-62183135 | None:intergenic | 45.0% | |
| TTGTTGCAGTGATAGGTCTG+AGG | - | chr8.4:62183117-62183136 | None:intergenic | 45.0% | |
| TTTGAGAACGTCGGTAGTGA+TGG | - | chr8.4:62183204-62183223 | None:intergenic | 45.0% | |
| ! | AGAAGTTTTCTCGGAGGATG+TGG | + | chr8.4:62183325-62183344 | MS.gene87848:CDS | 45.0% |
| ! | ATGTTGGTGGACCAAGAACA+AGG | - | chr8.4:62183037-62183056 | None:intergenic | 45.0% |
| ! | GGACCAAGAACAAGGACTTT+TGG | - | chr8.4:62183029-62183048 | None:intergenic | 45.0% |
| !! | AGAAATTGCTGGTGCTGGTT+TGG | + | chr8.4:62184802-62184821 | MS.gene87848:CDS | 45.0% |
| !! | TGGTGCTGGAGAAGTTTTCT+CGG | + | chr8.4:62183316-62183335 | MS.gene87848:CDS | 45.0% |
| !! | TGTTGATGGGTTGTGGTTGT+GGG | - | chr8.4:62183150-62183169 | None:intergenic | 45.0% |
| !! | TTGTTGATGGGTTGTGGTTG+TGG | - | chr8.4:62183151-62183170 | None:intergenic | 45.0% |
| !! | AAGTTTATTAAAATAAATAT+GGG | - | chr8.4:62183759-62183778 | None:intergenic | 5.0% |
| !! | TTGTATTTATTATATTAAAA+AGG | + | chr8.4:62183501-62183520 | MS.gene87848:intron | 5.0% |
| AACTTCTAGCGACGCACTTG+TGG | + | chr8.4:62184637-62184656 | MS.gene87848:CDS | 50.0% | |
| AGATTTGAACCGGTGACACG+AGG | - | chr8.4:62183702-62183721 | None:intergenic | 50.0% | |
| AGTTATCCCGATCTTACCGG+CGG | + | chr8.4:62183904-62183923 | MS.gene87848:intron | 50.0% | |
| ATCGATATGTGAGGATGCCG+CGG | + | chr8.4:62183402-62183421 | MS.gene87848:CDS | 50.0% | |
| CAACACTGGAGGTGACAACA+AGG | - | chr8.4:62183244-62183263 | None:intergenic | 50.0% | |
| CAGTGATAGGTCTGAGGGTT+TGG | - | chr8.4:62183111-62183130 | None:intergenic | 50.0% | |
| GAAGGAGAAATTGCTGGTGC+TGG | + | chr8.4:62184797-62184816 | MS.gene87848:CDS | 50.0% | |
| GCGGAGAAGCAGATTTGAAC+CGG | - | chr8.4:62183712-62183731 | None:intergenic | 50.0% | |
| GGCAAGCGTGTTGGAATTGT+TGG | + | chr8.4:62184488-62184507 | MS.gene87848:CDS | 50.0% | |
| GTGATAGGTCTGAGGGTTTG+GGG | - | chr8.4:62183109-62183128 | None:intergenic | 50.0% | |
| GTGATCAGTTCCAACACTGG+AGG | - | chr8.4:62183255-62183274 | None:intergenic | 50.0% | |
| TAGCTCAGCCAGTAGAGTAG+AGG | + | chr8.4:62183667-62183686 | MS.gene87848:intron | 50.0% | |
| TGCAGCGCTACAGAATATGG+CGG | - | chr8.4:62183177-62183196 | None:intergenic | 50.0% | |
| TGTCATGAGGAAAGTGACGC+TGG | + | chr8.4:62183376-62183395 | MS.gene87848:CDS | 50.0% | |
| ! | CTTGTTGTCACCTCCAGTGT+TGG | + | chr8.4:62183242-62183261 | MS.gene87848:CDS | 50.0% |
| ! | TGCTGGAGAAGTTTTCTCGG+AGG | + | chr8.4:62183319-62183338 | MS.gene87848:CDS | 50.0% |
| !! | CGGGAATTGTTGATGGGTTG+TGG | - | chr8.4:62183157-62183176 | None:intergenic | 50.0% |
| CAACCTGAATTCCGCGACGA+CGG | - | chr8.4:62183295-62183314 | None:intergenic | 55.0% | |
| CAAGGATCAGAACGTTCCCG+CGG | - | chr8.4:62183422-62183441 | None:intergenic | 55.0% | |
| CATGAGGAAAGTGACGCTGG+CGG | + | chr8.4:62183379-62183398 | MS.gene87848:CDS | 55.0% | |
| CTCGGAGGATGTGGCTGATA+TGG | + | chr8.4:62183334-62183353 | MS.gene87848:CDS | 55.0% | |
| GCAGCGCTACAGAATATGGC+GGG | - | chr8.4:62183176-62183195 | None:intergenic | 55.0% | |
| GCGGGAACGTTCTGATCCTT+GGG | + | chr8.4:62183421-62183440 | MS.gene87848:CDS | 55.0% | |
| GGATGTGGCTGATATGGCAG+TGG | + | chr8.4:62183340-62183359 | MS.gene87848:CDS | 55.0% | |
| GTGACAACAAGGCTGAGCGA+GGG | - | chr8.4:62183233-62183252 | None:intergenic | 55.0% | |
| TCGATATGTGAGGATGCCGC+GGG | + | chr8.4:62183403-62183422 | MS.gene87848:CDS | 55.0% | |
| TGATATGGCAGTGGCGTTGC+TGG | + | chr8.4:62183349-62183368 | MS.gene87848:CDS | 55.0% | |
| ! | CGTTGCTGGTTGCTGTCATG+AGG | + | chr8.4:62183363-62183382 | MS.gene87848:CDS | 55.0% |
| ! | CTTAATGAGTGCCGTCGTCG+CGG | + | chr8.4:62183281-62183300 | MS.gene87848:CDS | 55.0% |
| ! | GGTCTGAGGGTTTGGGGTTT+AGG | - | chr8.4:62183103-62183122 | None:intergenic | 55.0% |
| !! | GGAATTCAGGTTGCTGGTGC+TGG | + | chr8.4:62183302-62183321 | MS.gene87848:CDS | 55.0% |
| CGCGACGACGGCACTCATTA+AGG | - | chr8.4:62183283-62183302 | None:intergenic | 60.0% | |
| CGCGGGAACGTTCTGATCCT+TGG | + | chr8.4:62183420-62183439 | MS.gene87848:CDS | 60.0% | |
| GGTGACAACAAGGCTGAGCG+AGG | - | chr8.4:62183234-62183253 | None:intergenic | 60.0% | |
| TGTCTCGCCGCCGGTAAGAT+CGG | - | chr8.4:62183914-62183933 | None:intergenic | 60.0% | |
| ! | CGCTGGCGGATCGATATGTG+AGG | + | chr8.4:62183393-62183412 | MS.gene87848:CDS | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+TGG | + | chr8.4:62183296-62183315 | MS.gene87848:CDS | 60.0% |
| GTCTCGCCGCCGGTAAGATC+GGG | - | chr8.4:62183913-62183932 | None:intergenic | 65.0% | |
| GTGCCGTCGTCGCGGAATTC+AGG | + | chr8.4:62183289-62183308 | MS.gene87848:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 62183011 | 62185009 | 62183011 | ID=MS.gene87848 |
| chr8.4 | mRNA | 62183011 | 62185009 | 62183011 | ID=MS.gene87848.t1;Parent=MS.gene87848 |
| chr8.4 | exon | 62183011 | 62183463 | 62183011 | ID=MS.gene87848.t1.exon1;Parent=MS.gene87848.t1 |
| chr8.4 | CDS | 62183011 | 62183463 | 62183011 | ID=cds.MS.gene87848.t1;Parent=MS.gene87848.t1 |
| chr8.4 | exon | 62184482 | 62185009 | 62184482 | ID=MS.gene87848.t1.exon2;Parent=MS.gene87848.t1 |
| chr8.4 | CDS | 62184482 | 62185009 | 62184482 | ID=cds.MS.gene87848.t1;Parent=MS.gene87848.t1 |
| Gene Sequence |
| Protein sequence |
