AlfalfaGEDB | MS.gene88184

M. sativa cultivar XinJiangDaYe / MS.gene88184

KEGG: -
GO: -
PFAM: PF13561.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88184.t1	XP_013455783.2	97	271	8	0	1	271	1	271	3.30E-143	517.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88184.t1	Q94KL7	56.5	271	114	1	2	268	3	273	7.5e-80	298.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88184.t1	A0A396I496	97.0	271	8	0	1	271	1	271	2.4e-143	517.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene88184	0.816881	4.40E-52	-1.69E-46
MS.gene049983	MS.gene88184	0.834981	2.19E-56	-1.69E-46
MS.gene050654	MS.gene88184	0.8327	8.14E-56	-1.69E-46
MS.gene050941	MS.gene88184	0.800945	1.14E-48	-1.69E-46
MS.gene051122	MS.gene88184	0.807498	4.91E-50	-1.69E-46
MS.gene051184	MS.gene88184	0.801817	7.53E-49	-1.69E-46
MS.gene051275	MS.gene88184	0.807268	5.49E-50	-1.69E-46
MS.gene051831	MS.gene88184	0.817952	2.53E-52	-1.69E-46
MS.gene052674	MS.gene88184	0.804153	2.48E-49	-1.69E-46
MS.gene052675	MS.gene88184	0.800843	1.19E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88184.t1	MTR_4g052300	96.198	263	10	0	9	271	3	265	0.0	515
MS.gene88184.t1	MTR_4g052350	82.657	271	47	0	1	271	1	271	1.74e-168	467
MS.gene88184.t1	MTR_4g052340	84.133	271	43	0	1	271	1	271	3.00e-167	464
MS.gene88184.t1	MTR_4g052320	87.500	264	32	1	9	271	3	266	3.22e-162	451
MS.gene88184.t1	MTR_7g105460	58.238	261	106	1	13	270	12	272	2.21e-100	294
MS.gene88184.t1	MTR_7g071680	51.460	274	108	5	12	262	27	298	2.29e-90	270
MS.gene88184.t1	MTR_7g107670	50.193	259	120	3	12	262	31	288	4.73e-79	241
MS.gene88184.t1	MTR_7g105590	60.870	184	72	0	12	195	6	189	3.24e-76	230
MS.gene88184.t1	MTR_7g110130	48.649	259	127	3	12	266	4	260	3.39e-76	233
MS.gene88184.t1	MTR_7g083870	48.519	270	124	5	12	269	33	299	8.76e-76	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88184.t1	AT3G51680	52.920	274	108	6	12	266	30	301	9.76e-90	268
MS.gene88184.t1	AT2G47140	49.603	252	122	3	12	259	4	254	2.23e-77	235
MS.gene88184.t1	AT1G52340	49.446	271	122	3	12	268	16	285	3.46e-77	236
MS.gene88184.t1	AT4G03140	52.157	255	113	3	12	258	76	329	8.28e-76	234
MS.gene88184.t1	AT3G26770	48.062	258	120	4	12	258	39	293	8.50e-75	230
MS.gene88184.t1	AT3G29250	47.431	253	124	4	13	259	5	254	2.16e-73	225
MS.gene88184.t1	AT3G26760	44.697	264	134	3	6	258	28	290	7.77e-73	225
MS.gene88184.t1	AT3G29250	47.431	253	124	4	13	259	41	290	9.23e-73	225
MS.gene88184.t1	AT3G29250	46.899	258	127	5	9	259	38	292	6.91e-72	223
MS.gene88184.t1	AT2G47130	48.016	252	123	4	13	259	5	253	1.41e-71	221

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Find 76 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATTATCTGAATTTG+AGG	0.415679	4.4:+50283019	MS.gene88184:CDS
AACAATGGCAACCGTTCCAT+TGG	0.500328	4.4:+50282461	None:intergenic
AACACAACCGTTTCCAAGTA+CGG	0.463216	4.4:+50282933	MS.gene88184:CDS
AACGACTTGAGCCCCATGCT+CGG	0.539844	4.4:-50282796	None:intergenic
AACTTGGTTGGCGTCTTTCT+TGG	0.316400	4.4:+50283056	MS.gene88184:CDS
AACTTGTTCATACCTTCTTA+AGG	0.396248	4.4:-50282493	None:intergenic
AAGACTCTTCTCCGAGCATG+GGG	0.588198	4.4:+50282785	MS.gene88184:CDS
AAGGTGGCTCTGATCACCGG+TGG	0.652302	4.4:+50282735	MS.gene88184:CDS
AATTCATTTACAAGGCTTGA+GGG	0.492849	4.4:+50282711	MS.gene88184:intron
AATTTCTTTAAGCTTGATGA+TGG	0.444421	4.4:+50283299	MS.gene88184:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCATTTACAAGGCTTGA+GGG	+	chr4.4:50282711-50282730	MS.gene88184:intron	30.0%
AGATAATCACAGACTTAAGT+TGG	-	chr4.4:50282587-50282606	None:intergenic	30.0%
GGAAGTGATTAAAGTTAACT+TGG	+	chr4.4:50283040-50283059	MS.gene88184:CDS	30.0%
TAATCTTGTACCTAAAGATG+TGG	+	chr4.4:50283358-50283377	MS.gene88184:CDS	30.0%
ATAATTAACACAGCCAGTGT+TGG	+	chr4.4:50283125-50283144	MS.gene88184:CDS	35.0%
ATAGGAGTCGCAAGAAAATA+AGG	-	chr4.4:50283272-50283291	None:intergenic	35.0%
ATTCATTTACAAGGCTTGAG+GGG	+	chr4.4:50282712-50282731	MS.gene88184:intron	35.0%
CAATTCATTTACAAGGCTTG+AGG	+	chr4.4:50282710-50282729	MS.gene88184:intron	35.0%
CTTAATCTTGTCATAGATGG+AGG	+	chr4.4:50283431-50283450	MS.gene88184:CDS	35.0%
GATATCATGTTTAACAACGC+TGG	+	chr4.4:50282963-50282982	MS.gene88184:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	50282465	50283502	50282465	ID=MS.gene88184
chr4.4	mRNA	50282465	50283502	50282465	ID=MS.gene88184.t1;Parent=MS.gene88184
chr4.4	exon	50282465	50282502	50282465	ID=MS.gene88184.t1.exon1;Parent=MS.gene88184.t1
chr4.4	CDS	50282465	50282502	50282465	ID=cds.MS.gene88184.t1;Parent=MS.gene88184.t1
chr4.4	exon	50282725	50283502	50282725	ID=MS.gene88184.t1.exon2;Parent=MS.gene88184.t1
chr4.4	CDS	50282725	50283502	50282725	ID=cds.MS.gene88184.t1;Parent=MS.gene88184.t1

Gene Sequence

>MS.gene88184

ATGGCAACCGTTCCATTGGTCTCTAATGCCTTAAGAAGGTATGAACAAGTTGCAATTCACCTTATTTCATTTATTTTGTGTATATTAATGGTTGAGTGTTGAGATAATCTATGTTTGTTCCAACTTAAGTCTGTGATTATCTCCAAAATCCTACATAAATATACGATTTATGAAAAAATATAAGTGGACATTTGAAGGAGATATTATTAACCACACAAATTTAAGTAAAATAATTTTGGCATGCTCAATTCATTTACAAGGCTTGAGGGGAAGGTGGCTCTGATCACCGGTGGTGCGAGCGGCATTGGTGAGGCTACCGCAAGACTCTTCTCCGAGCATGGGGCTCAAGTCGTTATAGCTGACATCCAAGACGACAAAGGACACTCTATTTGCAACGAGTTACACAAACCCTCTTCTTCCTATGTTCGTTGTGACGTGACAAAGGAAGAAGACATTGAAAATGCCGTGAACACAACCGTTTCCAAGTACGGTAAACTAGATATCATGTTTAACAACGCTGGCATAAGCGGTGTAAACAAAACAAAGATACTTGAAAACAAATTATCTGAATTTGAGGAAGTGATTAAAGTTAACTTGGTTGGCGTCTTTCTTGGAACAAAGCATGCATCAAGGGTAATGATCCCTGCTCGACGGGGTAGCATAATTAACACAGCCAGTGTTGGTGGAAGCATTGGTGGTTGTGCTCCACATGCCTACACAAGTTCAAAGCACGCCGTTGTTGGGCTGATGAGAAACACGGCCATCGAGCTTGGACCATTCGGTATTAGGGTGAATTGTGTGTCACCTTATTTTCTTGCGACTCCTATGGTTACAAATTTCTTTAAGCTTGATGATGGTGGGGCTCTAGATATTTTTTCTAACCTAAAGGGTACTAATCTTGTACCTAAAGATGTGGCTGAAGCTGCTCTGTACTTGGGAAGTGATGAGTCTAAGTATGTTAGTGGTCTTAATCTTGTCATAGATGGAGGAGTCAGTGTCGCTAACAATGGATTTTGTGTGTTTGAACAATCTGTTTGA

Protein sequence

>MS.gene88184.t1

MATVPLVSNALRRLEGKVALITGGASGIGEATARLFSEHGAQVVIADIQDDKGHSICNELHKPSSSYVRCDVTKEEDIENAVNTTVSKYGKLDIMFNNAGISGVNKTKILENKLSEFEEVIKVNLVGVFLGTKHASRVMIPARRGSIINTASVGGSIGGCAPHAYTSSKHAVVGLMRNTAIELGPFGIRVNCVSPYFLATPMVTNFFKLDDGGALDIFSNLKGTNLVPKDVAEAALYLGSDESKYVSGLNLVIDGGVSVANNGFCVFEQSV