Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88380.t1 | XP_013464783.1 | 97.7 | 709 | 15 | 1 | 1 | 708 | 1 | 709 | 0.00E+00 | 1264.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88380.t1 | Q9XGM2 | 81.9 | 554 | 98 | 1 | 7 | 560 | 8 | 559 | 6.6e-269 | 927.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88380.t1 | A0A072VBM0 | 97.7 | 709 | 15 | 1 | 1 | 708 | 1 | 709 | 0.0e+00 | 1264.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene88380 | 0.814845 | 1.25E-51 | -1.69E-46 |
| MS.gene049190 | MS.gene88380 | 0.81626 | 6.06E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene88380 | 0.808038 | 3.77E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene88380 | 0.803809 | 2.92E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene88380 | 0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene88380 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene88380 | 0.821847 | 3.25E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene88380 | 0.802323 | 5.93E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene88380 | 0.823906 | 1.08E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene88380 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene88380 | 0.818271 | 2.14E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene88380 | 0.82166 | 3.59E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene88380 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene88380 | 0.8584 | 8.46E-63 | -1.69E-46 |
| MS.gene05215 | MS.gene88380 | 0.816599 | 5.09E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene88380 | 0.800969 | 1.12E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene88380 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene88380 | 0.804561 | 2.04E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene88380 | 0.82584 | 3.76E-54 | -1.69E-46 |
| MS.gene052612 | MS.gene88380 | 0.808569 | 2.90E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene88380 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene88380 | 0.81307 | 3.08E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene88380 | 0.804003 | 2.66E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene88380 | 0.804041 | 2.61E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene88380 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene88380 | 0.80955 | 1.79E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene88380 | 0.828948 | 6.77E-55 | -1.69E-46 |
| MS.gene053599 | MS.gene88380 | 0.80122 | 9.98E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene88380 | 0.826837 | 2.18E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene88380 | 0.811561 | 6.58E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene88380 | 0.831215 | 1.89E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene88380 | 0.834666 | 2.63E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene88380 | 0.803481 | 3.41E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene88380 | 0.819737 | 9.92E-53 | -1.69E-46 |
| MS.gene055890 | MS.gene88380 | 0.813142 | 2.97E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene88380 | 0.809871 | 1.53E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene88380 | 0.807815 | 4.20E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene88380 | 0.828324 | 9.58E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene88380 | 0.826484 | 2.65E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene88380 | 0.821532 | 3.84E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene88380 | 0.814435 | 1.54E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene88380 | 0.810594 | 1.07E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene88380 | 0.817233 | 3.67E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene88380 | 0.818204 | 2.21E-52 | -1.69E-46 |
| MS.gene060312 | MS.gene88380 | 0.821919 | 3.13E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene88380 | 0.828266 | 9.89E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88380.t1 | MTR_2g081100 | 99.013 | 709 | 6 | 1 | 1 | 708 | 1 | 709 | 0.0 | 1452 |
| MS.gene88380.t1 | MTR_2g081100 | 99.142 | 699 | 5 | 1 | 1 | 698 | 1 | 699 | 0.0 | 1431 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88380.t1 | AT5G54260 | 74.095 | 718 | 165 | 8 | 7 | 708 | 8 | 720 | 0.0 | 1055 |
| MS.gene88380.t1 | AT5G54260 | 74.095 | 718 | 165 | 8 | 7 | 708 | 12 | 724 | 0.0 | 1055 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTGATTTAATTCTTC+TGG | 0.168024 | 2.4:-17236245 | None:intergenic |
| ACCTGCACCCTTCTCCAATT+TGG | 0.198759 | 2.4:-17235477 | None:intergenic |
| AGAGGAAGGGGCAGGGGTAG+GGG | 0.205151 | 2.4:+17238145 | MS.gene88380:CDS |
| GCCAAAACATGTGCTTCTTT+TGG | 0.222447 | 2.4:+17232913 | MS.gene88380:CDS |
| CATTGTTCATGAGCATTCTA+TGG | 0.226787 | 2.4:-17239079 | None:intergenic |
| TTCTGATTGGTTCAACATTC+TGG | 0.230665 | 2.4:+17232429 | MS.gene88380:CDS |
| ACAACCCTTGATGGATCTTT+AGG | 0.232986 | 2.4:+17238199 | MS.gene88380:CDS |
| TGTGAACAAGGATGATAAAA+TGG | 0.237387 | 2.4:+17237135 | MS.gene88380:CDS |
| ACTATAAATCCTCAAAGATT+TGG | 0.257048 | 2.4:+17235304 | MS.gene88380:CDS |
| AGGGGCAGGGGTAGGGGAAG+AGG | 0.277806 | 2.4:+17238151 | MS.gene88380:CDS |
| CTCTTCCACTGCATTTCCTT+TGG | 0.279643 | 2.4:-17238762 | None:intergenic |
| TCACACCCTTCCTGAGATTC+AGG | 0.293271 | 2.4:-17232403 | None:intergenic |
| TTGCCTGTGTTTACTATTCA+TGG | 0.297575 | 2.4:+17230079 | MS.gene88380:CDS |
| CAACCCTTGATGGATCTTTA+GGG | 0.299655 | 2.4:+17238200 | MS.gene88380:CDS |
| AGTGACAATCGGTTGCTATT+AGG | 0.302568 | 2.4:-17229036 | None:intergenic |
| TCCAAAAGAAGCACATGTTT+TGG | 0.306348 | 2.4:-17232914 | None:intergenic |
| AAGAGGAAGGGGCAGGGGTA+GGG | 0.314205 | 2.4:+17238144 | MS.gene88380:CDS |
| GAAGAGGAAGGGGCAGGGGT+AGG | 0.327346 | 2.4:+17238143 | MS.gene88380:CDS |
| GAAGCTTAAGTTCTGCTCTT+TGG | 0.327549 | 2.4:-17234879 | None:intergenic |
| GATACTTCCAGTCAATGATT+TGG | 0.332660 | 2.4:+17237093 | MS.gene88380:CDS |
| TCCATGAAAATAAACCTTCT+AGG | 0.339465 | 2.4:+17229176 | MS.gene88380:CDS |
| AAGAATAGAATTCTGATCAT+TGG | 0.350618 | 2.4:-17234501 | None:intergenic |
| CAAACCTTCTTTATGAGAAT+AGG | 0.360176 | 2.4:-17232079 | None:intergenic |
| TTAGAGATGAAAGACTTAAT+AGG | 0.367594 | 2.4:+17232251 | MS.gene88380:CDS |
| TTTGGTTGCTGAAAATAATC+TGG | 0.367878 | 2.4:+17236277 | MS.gene88380:CDS |
| AAAGGCCGGACAGATGTTAA+AGG | 0.377556 | 2.4:-17233070 | None:intergenic |
| TGCTGATGATGGGGATAATA+TGG | 0.379550 | 2.4:+17238724 | MS.gene88380:CDS |
| TCAACAGCTGTAGCTCTATA+TGG | 0.380069 | 2.4:+17232217 | MS.gene88380:CDS |
| TTGAAGCAGACAACCCTTGA+TGG | 0.381794 | 2.4:+17238190 | MS.gene88380:CDS |
| CCTTTCCGACCTCTGGTGCT+TGG | 0.384030 | 2.4:-17238091 | None:intergenic |
| CGATTGTCACTTAGGTTACA+TGG | 0.387245 | 2.4:+17229048 | MS.gene88380:CDS |
| AAAATATAAGAATGTCTTGC+GGG | 0.387706 | 2.4:-17235445 | None:intergenic |
| TCAACAGAACATAGAGGCTT+TGG | 0.390185 | 2.4:+17236259 | MS.gene88380:CDS |
| CCAATCTACCGGCACGGAAA+AGG | 0.391398 | 2.4:+17238982 | MS.gene88380:CDS |
| AGAGGAAGAGGAAGGGGCAG+GGG | 0.392525 | 2.4:+17238139 | MS.gene88380:CDS |
| CTATAAATCCTCAAAGATTT+GGG | 0.392946 | 2.4:+17235305 | MS.gene88380:CDS |
| TGCTACACAGTCTTCTAAAC+GGG | 0.396941 | 2.4:+17239031 | MS.gene88380:CDS |
| TGATCATTGGAATCAATATC+AGG | 0.400641 | 2.4:-17234488 | None:intergenic |
| TTGACTAAAGTTGACCTAGA+AGG | 0.403926 | 2.4:-17229190 | None:intergenic |
| TCCTGGTGCTCAGTCCTTTG+AGG | 0.403956 | 2.4:+17237852 | MS.gene88380:CDS |
| TTCTGGTACTTCATCAGAAC+AGG | 0.405240 | 2.4:+17232446 | MS.gene88380:CDS |
| TATTTCTGCCCAAATCTTTG+AGG | 0.412142 | 2.4:-17235313 | None:intergenic |
| GAAGATTTAGTTGTTAAAGT+TGG | 0.415634 | 2.4:+17237436 | MS.gene88380:CDS |
| GCTTTCTAGACTTCATTGTA+TGG | 0.416041 | 2.4:+17232694 | MS.gene88380:CDS |
| GATGTTAAAGGTATCTTAGT+AGG | 0.418928 | 2.4:-17233058 | None:intergenic |
| CCAGAGGAAGAGGAAGGGGC+AGG | 0.421527 | 2.4:+17238137 | MS.gene88380:CDS |
| AACAGATCCTTTCCGACCTC+TGG | 0.421775 | 2.4:-17238098 | None:intergenic |
| GCTGTAGCTCTATATGGCCT+TGG | 0.422931 | 2.4:+17232223 | MS.gene88380:CDS |
| ACGGAAAAGGGCTGCTCCAA+GGG | 0.426090 | 2.4:+17238995 | MS.gene88380:CDS |
| CCTGCCCCTTCCTCTTCCTC+TGG | 0.426566 | 2.4:-17238137 | None:intergenic |
| GGTTGTCTGCTTCAAGGTGC+TGG | 0.429348 | 2.4:-17238182 | None:intergenic |
| CGAATGTTTGGTTGACCCTC+AGG | 0.434408 | 2.4:+17232728 | MS.gene88380:CDS |
| CCCCATCATCAGCACCACTT+TGG | 0.435286 | 2.4:-17238715 | None:intergenic |
| CTTTCTAGACTTCATTGTAT+GGG | 0.443749 | 2.4:+17232695 | MS.gene88380:CDS |
| ACCTCAAAGGACTGAGCACC+AGG | 0.444661 | 2.4:-17237853 | None:intergenic |
| CAATCTACCGGCACGGAAAA+GGG | 0.446890 | 2.4:+17238983 | MS.gene88380:CDS |
| ATCAAGGGTTGTCTGCTTCA+AGG | 0.448531 | 2.4:-17238188 | None:intergenic |
| GGGGCATGAGCACGAATGTT+TGG | 0.455683 | 2.4:+17232716 | MS.gene88380:CDS |
| TTCATTTGTAGGCAAAATTG+AGG | 0.455831 | 2.4:+17236205 | MS.gene88380:intron |
| TGTAATCTAGTCAACTACTT+TGG | 0.456124 | 2.4:+17232010 | MS.gene88380:CDS |
| TCCAAATTGGAGAAGGGTGC+AGG | 0.460729 | 2.4:+17235476 | MS.gene88380:CDS |
| GTGCTACACAGTCTTCTAAA+CGG | 0.463803 | 2.4:+17239030 | MS.gene88380:CDS |
| ATAGCAACCGATTGTCACTT+AGG | 0.464852 | 2.4:+17229040 | MS.gene88380:CDS |
| TGATCGCTAACAACTTGAAA+AGG | 0.466142 | 2.4:-17229259 | None:intergenic |
| GAAGATCCGCATTTCAATGT+TGG | 0.469646 | 2.4:+17230055 | MS.gene88380:CDS |
| CAGAGGAAGAGGAAGGGGCA+GGG | 0.469663 | 2.4:+17238138 | MS.gene88380:CDS |
| ATTAAATACGTCTCAACCTC+GGG | 0.469977 | 2.4:+17239139 | MS.gene88380:CDS |
| CAATCCTATTCTCATAAAGA+AGG | 0.478266 | 2.4:+17232075 | MS.gene88380:CDS |
| CTTCAGGAAGTTCCAGGCAT+GGG | 0.480376 | 2.4:+17232830 | MS.gene88380:intron |
| CACGGAAAAGGGCTGCTCCA+AGG | 0.482529 | 2.4:+17238994 | MS.gene88380:CDS |
| TTTGTTCTAGGAACGTGTTA+AGG | 0.483769 | 2.4:+17237792 | MS.gene88380:intron |
| AAGGGTGTGAAGTTTCTGAT+TGG | 0.487928 | 2.4:+17232416 | MS.gene88380:CDS |
| GCTCCAAGGGGAAGAGGTAG+AGG | 0.491942 | 2.4:+17239008 | MS.gene88380:CDS |
| AGTGAACTGTGAAGAGTCCT+TGG | 0.492921 | 2.4:-17237830 | None:intergenic |
| CTGTAGCTCTATATGGCCTT+GGG | 0.495853 | 2.4:+17232224 | MS.gene88380:CDS |
| GTGGATGCGACCTGAATCTC+AGG | 0.496097 | 2.4:+17232393 | MS.gene88380:CDS |
| CTAACAACTTGAAAAGGAAC+AGG | 0.502105 | 2.4:-17229253 | None:intergenic |
| ATCATCAGCACCACTTTGGA+TGG | 0.502758 | 2.4:-17238711 | None:intergenic |
| TTTCAAGGCAGAAGTGCAGC+TGG | 0.505124 | 2.4:+17238007 | MS.gene88380:CDS |
| ATCCAAAGTGGTGCTGATGA+TGG | 0.506619 | 2.4:+17238713 | MS.gene88380:CDS |
| AAATCTTCCACATCAAGCTT+CGG | 0.507268 | 2.4:-17237421 | None:intergenic |
| GCACCTCTACCTCTTCCCCT+TGG | 0.512047 | 2.4:-17239011 | None:intergenic |
| CAAATGCTTGAAACGAATCA+TGG | 0.512507 | 2.4:-17229090 | None:intergenic |
| GACTCTTCACAGTTCACTCC+TGG | 0.513011 | 2.4:+17237835 | MS.gene88380:CDS |
| GGAAGAGATTGATGACAGTT+CGG | 0.518448 | 2.4:+17238778 | MS.gene88380:CDS |
| GCAATATCCAAATCATTGAC+TGG | 0.521490 | 2.4:-17237100 | None:intergenic |
| GAAATATGAAATCCCATGCC+TGG | 0.524740 | 2.4:-17232842 | None:intergenic |
| CAAACTACAACCAGAGGAAG+AGG | 0.527115 | 2.4:+17238127 | MS.gene88380:CDS |
| TAAAGTTGGAGAATGCTTTG+AGG | 0.530060 | 2.4:+17237450 | MS.gene88380:CDS |
| CATGTAACCTAAGTGACAAT+CGG | 0.533487 | 2.4:-17229047 | None:intergenic |
| CAGGGGTAGGGGAAGAGGCA+AGG | 0.534037 | 2.4:+17238156 | MS.gene88380:CDS |
| ACAACCAGAGGAAGAGGAAG+GGG | 0.535346 | 2.4:+17238133 | MS.gene88380:CDS |
| AAAGGCATCCAAATTGGAGA+AGG | 0.535738 | 2.4:+17235469 | MS.gene88380:CDS |
| TAGGGTTTCGCCCTTCTCAA+AGG | 0.536745 | 2.4:+17238218 | MS.gene88380:CDS |
| AGCAAATGCAACCTTTGAGA+AGG | 0.537592 | 2.4:-17238229 | None:intergenic |
| TGAAGTCTAGAAAGCGTGGC+AGG | 0.538720 | 2.4:-17232686 | None:intergenic |
| TTTCTAGACTTCATTGTATG+GGG | 0.538921 | 2.4:+17232696 | MS.gene88380:CDS |
| AGGGCTGCTCCAAGGGGAAG+AGG | 0.539837 | 2.4:+17239002 | MS.gene88380:CDS |
| TCCAAAGTGGTGCTGATGAT+GGG | 0.545752 | 2.4:+17238714 | MS.gene88380:CDS |
| TGCGCAGAACAAAATTGCTA+AGG | 0.546432 | 2.4:+17237387 | MS.gene88380:intron |
| GCTTCCACTAGTACGTATCA+AGG | 0.548376 | 2.4:+17234897 | MS.gene88380:CDS |
| GATGTTGCAACCGACGATCC+TGG | 0.552775 | 2.4:-17232869 | None:intergenic |
| AGATTTGGGCAGAAATATGT+AGG | 0.554436 | 2.4:+17235319 | MS.gene88380:CDS |
| CGCATCCACTGCACAGCATG+TGG | 0.557059 | 2.4:-17232379 | None:intergenic |
| GAAACCCTAAAGATCCATCA+AGG | 0.558816 | 2.4:-17238204 | None:intergenic |
| TGAAGAAATTTGCTCAATAG+CGG | 0.559616 | 2.4:+17229111 | MS.gene88380:CDS |
| ATGTTAAAGGTATCTTAGTA+GGG | 0.562457 | 2.4:-17233057 | None:intergenic |
| AGATACCTTTAACATCTGTC+CGG | 0.562560 | 2.4:+17233065 | MS.gene88380:CDS |
| TCTTGAACATCTTGACAAAG+TGG | 0.563668 | 2.4:+17234520 | MS.gene88380:CDS |
| GCAAATGCAACCTTTGAGAA+GGG | 0.569265 | 2.4:-17238228 | None:intergenic |
| GGCATCTTCATCATCGCTGA+AGG | 0.569407 | 2.4:-17238047 | None:intergenic |
| GGAAATCATGATGATCCTGC+TGG | 0.569997 | 2.4:+17230100 | MS.gene88380:CDS |
| GGATTTCATATTTCACAACC+AGG | 0.572759 | 2.4:+17232851 | MS.gene88380:CDS |
| CGGAAAAGGGCTGCTCCAAG+GGG | 0.574619 | 2.4:+17238996 | MS.gene88380:CDS |
| TTCTAGACTTCATTGTATGG+GGG | 0.576652 | 2.4:+17232697 | MS.gene88380:CDS |
| GATTAAATACGTCTCAACCT+CGG | 0.577464 | 2.4:+17239138 | MS.gene88380:CDS |
| GGAACGATCCACACGCTCCA+AGG | 0.577499 | 2.4:+17237813 | MS.gene88380:CDS |
| TCTTCAGGAAGTTCCAGGCA+TGG | 0.578864 | 2.4:+17232829 | MS.gene88380:intron |
| CCAAGCACCAGAGGTCGGAA+AGG | 0.579149 | 2.4:+17238091 | MS.gene88380:CDS |
| TGGGCAGAAATATGTAGGAA+AGG | 0.579944 | 2.4:+17235324 | MS.gene88380:CDS |
| GGACAATGAATCCAATCTAC+CGG | 0.580873 | 2.4:+17238971 | MS.gene88380:intron |
| ATGACACATACCACTCCAGC+AGG | 0.583755 | 2.4:-17230115 | None:intergenic |
| TTTCATCTCTAATGTTCCCA+AGG | 0.584085 | 2.4:-17232240 | None:intergenic |
| CTACAACCAGAGGAAGAGGA+AGG | 0.586751 | 2.4:+17238131 | MS.gene88380:CDS |
| GAAAATATAAGAATGTCTTG+CGG | 0.587904 | 2.4:-17235446 | None:intergenic |
| ATTTGTTGGATTTACCTCAA+AGG | 0.592825 | 2.4:-17237866 | None:intergenic |
| TACAACCAGAGGAAGAGGAA+GGG | 0.594910 | 2.4:+17238132 | MS.gene88380:CDS |
| TGCTGAGAGAATATCAACTA+CGG | 0.595254 | 2.4:-17231987 | None:intergenic |
| ATTAAATCAACAGAACATAG+AGG | 0.602192 | 2.4:+17236253 | MS.gene88380:CDS |
| CACGTCGATTTCATGCTACT+CGG | 0.602254 | 2.4:+17229142 | MS.gene88380:CDS |
| TGAAGAGTCCTTGGAGCGTG+TGG | 0.603569 | 2.4:-17237821 | None:intergenic |
| TATTTCACAACCAGGATCGT+CGG | 0.604266 | 2.4:+17232859 | MS.gene88380:CDS |
| CCTCTGTATACTCGAAAGGC+CGG | 0.606355 | 2.4:-17233084 | None:intergenic |
| TGCGACCTGAATCTCAGGAA+GGG | 0.609434 | 2.4:+17232398 | MS.gene88380:CDS |
| AGCTCAAAACCAAGCACCAG+AGG | 0.612912 | 2.4:+17238082 | MS.gene88380:CDS |
| AAATGAGCCGAAGCTTGATG+TGG | 0.621857 | 2.4:+17237414 | MS.gene88380:CDS |
| GTTGCAACATCACTTATCGA+TGG | 0.625758 | 2.4:+17232881 | MS.gene88380:CDS |
| TCATGATGATCCTGCTGGAG+TGG | 0.625967 | 2.4:+17230105 | MS.gene88380:CDS |
| AGAGAATATCAACTACGGAA+AGG | 0.631891 | 2.4:-17231982 | None:intergenic |
| CTGACCTCTGTATACTCGAA+AGG | 0.633276 | 2.4:-17233088 | None:intergenic |
| AAGGCATCCAAATTGGAGAA+GGG | 0.633969 | 2.4:+17235470 | MS.gene88380:CDS |
| CAAAACCAAGCACCAGAGGT+CGG | 0.635046 | 2.4:+17238086 | MS.gene88380:CDS |
| ATGCGACCTGAATCTCAGGA+AGG | 0.635988 | 2.4:+17232397 | MS.gene88380:CDS |
| ATTACCTTGATACGTACTAG+TGG | 0.637391 | 2.4:-17234901 | None:intergenic |
| ATGAATCCAATCTACCGGCA+CGG | 0.638112 | 2.4:+17238976 | MS.gene88380:CDS |
| GCAGCAACTTCCATCCAAAG+TGG | 0.643383 | 2.4:+17238701 | MS.gene88380:CDS |
| AGACGCCACATGCTGTGCAG+TGG | 0.645348 | 2.4:+17232374 | MS.gene88380:intron |
| TGCAGCTGGAGCTGATAGTG+CGG | 0.647636 | 2.4:+17238021 | MS.gene88380:CDS |
| GCTTCAAGTGACGATGCCAA+AGG | 0.650911 | 2.4:+17238746 | MS.gene88380:CDS |
| AGTACAATATTGATGAAACA+CGG | 0.651026 | 2.4:+17237176 | MS.gene88380:CDS |
| GTACAATATTGATGAAACAC+GGG | 0.651638 | 2.4:+17237177 | MS.gene88380:CDS |
| CCAAAGTGGTGCTGATGATG+GGG | 0.653522 | 2.4:+17238715 | MS.gene88380:CDS |
| ACAATGAAGTCTAGAAAGCG+TGG | 0.653525 | 2.4:-17232690 | None:intergenic |
| CGATGCCAAAGGAAATGCAG+TGG | 0.653686 | 2.4:+17238757 | MS.gene88380:CDS |
| TTTCCATGAATAGTAAACAC+AGG | 0.658477 | 2.4:-17230082 | None:intergenic |
| GGCAAACCAACATTGAAATG+CGG | 0.666565 | 2.4:-17230061 | None:intergenic |
| GCATCTCAAACTACAACCAG+AGG | 0.674182 | 2.4:+17238121 | MS.gene88380:CDS |
| AAACCCTAAAGATCCATCAA+GGG | 0.678157 | 2.4:-17238203 | None:intergenic |
| GCAAAATTGAGGATTCAGAA+CGG | 0.680935 | 2.4:+17236216 | MS.gene88380:CDS |
| TTAAAGGTATCTTAGTAGGG+CGG | 0.695776 | 2.4:-17233054 | None:intergenic |
| GCTACACAGTCTTCTAAACG+GGG | 0.703226 | 2.4:+17239032 | MS.gene88380:CDS |
| CCGGCCTTTCGAGTATACAG+AGG | 0.728303 | 2.4:+17233084 | MS.gene88380:CDS |
| GTCGATTTCATGCTACTCGG+TGG | 0.733967 | 2.4:+17229145 | MS.gene88380:CDS |
| CTACACAGTCTTCTAAACGG+GGG | 0.738244 | 2.4:+17239033 | MS.gene88380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 17229004 | 17239893 | 17229004 | ID=MS.gene88380 |
| chr2.4 | mRNA | 17229004 | 17239893 | 17229004 | ID=MS.gene88380.t1;Parent=MS.gene88380 |
| chr2.4 | exon | 17229004 | 17229302 | 17229004 | ID=MS.gene88380.t1.exon1;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17229004 | 17229302 | 17229004 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17230036 | 17230126 | 17230036 | ID=MS.gene88380.t1.exon2;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17230036 | 17230126 | 17230036 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17231977 | 17232096 | 17231977 | ID=MS.gene88380.t1.exon3;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17231977 | 17232096 | 17231977 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17232214 | 17232282 | 17232214 | ID=MS.gene88380.t1.exon4;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17232214 | 17232282 | 17232214 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17232376 | 17232467 | 17232376 | ID=MS.gene88380.t1.exon5;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17232376 | 17232467 | 17232376 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17232647 | 17232749 | 17232647 | ID=MS.gene88380.t1.exon6;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17232647 | 17232749 | 17232647 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17232836 | 17232943 | 17232836 | ID=MS.gene88380.t1.exon7;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17232836 | 17232943 | 17232836 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17233043 | 17233105 | 17233043 | ID=MS.gene88380.t1.exon8;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17233043 | 17233105 | 17233043 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17234470 | 17234541 | 17234470 | ID=MS.gene88380.t1.exon9;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17234470 | 17234541 | 17234470 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17234841 | 17234918 | 17234841 | ID=MS.gene88380.t1.exon10;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17234841 | 17234918 | 17234841 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17235283 | 17235345 | 17235283 | ID=MS.gene88380.t1.exon11;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17235283 | 17235345 | 17235283 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17235437 | 17235497 | 17235437 | ID=MS.gene88380.t1.exon12;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17235437 | 17235497 | 17235437 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17236216 | 17236298 | 17236216 | ID=MS.gene88380.t1.exon13;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17236216 | 17236298 | 17236216 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17237085 | 17237198 | 17237085 | ID=MS.gene88380.t1.exon14;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17237085 | 17237198 | 17237085 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17237394 | 17237471 | 17237394 | ID=MS.gene88380.t1.exon15;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17237394 | 17237471 | 17237394 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17237802 | 17237873 | 17237802 | ID=MS.gene88380.t1.exon16;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17237802 | 17237873 | 17237802 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17238004 | 17238239 | 17238004 | ID=MS.gene88380.t1.exon17;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17238004 | 17238239 | 17238004 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17238697 | 17238799 | 17238697 | ID=MS.gene88380.t1.exon18;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17238697 | 17238799 | 17238697 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17238972 | 17239160 | 17238972 | ID=MS.gene88380.t1.exon19;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17238972 | 17239160 | 17238972 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| chr2.4 | exon | 17239861 | 17239893 | 17239861 | ID=MS.gene88380.t1.exon20;Parent=MS.gene88380.t1 |
| chr2.4 | CDS | 17239861 | 17239893 | 17239861 | ID=cds.MS.gene88380.t1;Parent=MS.gene88380.t1 |
| Gene Sequence |
| Protein sequence |
