Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89552.t1 | XP_013468437.1 | 90.9 | 890 | 81 | 0 | 1 | 890 | 1 | 890 | 0.00E+00 | 1654.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89552.t1 | Q9SSE9 | 45.3 | 848 | 351 | 9 | 89 | 885 | 112 | 897 | 2.1e-203 | 710.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89552.t1 | A0A072VKD6 | 90.9 | 890 | 81 | 0 | 1 | 890 | 1 | 890 | 0.0e+00 | 1654.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene89552.t1 | TR | Jumonji |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene89552 | 0.842658 | 2.26E-58 | -1.69E-46 |
MS.gene049824 | MS.gene89552 | 0.841586 | 4.34E-58 | -1.69E-46 |
MS.gene050020 | MS.gene89552 | 0.811806 | 5.82E-51 | -1.69E-46 |
MS.gene050807 | MS.gene89552 | 0.808463 | 3.06E-50 | -1.69E-46 |
MS.gene05157 | MS.gene89552 | 0.815146 | 1.07E-51 | -1.69E-46 |
MS.gene051720 | MS.gene89552 | 0.810946 | 8.95E-51 | -1.69E-46 |
MS.gene051744 | MS.gene89552 | 0.80316 | 3.98E-49 | -1.69E-46 |
MS.gene052133 | MS.gene89552 | 0.814068 | 1.86E-51 | -1.69E-46 |
MS.gene052584 | MS.gene89552 | 0.801602 | 8.33E-49 | -1.69E-46 |
MS.gene053122 | MS.gene89552 | 0.83475 | 2.50E-56 | -1.69E-46 |
MS.gene053144 | MS.gene89552 | 0.808203 | 3.48E-50 | -1.69E-46 |
MS.gene053174 | MS.gene89552 | 0.809397 | 1.93E-50 | -1.69E-46 |
MS.gene053226 | MS.gene89552 | 0.823545 | 1.31E-53 | -1.69E-46 |
MS.gene053599 | MS.gene89552 | 0.808503 | 3.00E-50 | -1.69E-46 |
MS.gene054550 | MS.gene89552 | 0.800794 | 1.22E-48 | -1.69E-46 |
MS.gene054584 | MS.gene89552 | 0.817382 | 3.39E-52 | -1.69E-46 |
MS.gene055465 | MS.gene89552 | 0.814542 | 1.46E-51 | -1.69E-46 |
MS.gene055466 | MS.gene89552 | 0.802074 | 6.67E-49 | -1.69E-46 |
MS.gene055512 | MS.gene89552 | 0.805694 | 1.18E-49 | -1.69E-46 |
MS.gene055580 | MS.gene89552 | -0.831456 | 1.65E-55 | -1.69E-46 |
MS.gene055890 | MS.gene89552 | 0.829798 | 4.21E-55 | -1.69E-46 |
MS.gene055891 | MS.gene89552 | 0.813081 | 3.07E-51 | -1.69E-46 |
MS.gene056043 | MS.gene89552 | -0.808012 | 3.82E-50 | -1.69E-46 |
MS.gene056507 | MS.gene89552 | 0.800167 | 1.64E-48 | -1.69E-46 |
MS.gene058216 | MS.gene89552 | 0.821846 | 3.25E-53 | -1.69E-46 |
MS.gene05978 | MS.gene89552 | 0.832615 | 8.55E-56 | -1.69E-46 |
MS.gene060194 | MS.gene89552 | 0.819304 | 1.25E-52 | -1.69E-46 |
MS.gene060355 | MS.gene89552 | 0.801721 | 7.88E-49 | -1.69E-46 |
MS.gene060519 | MS.gene89552 | 0.815765 | 7.82E-52 | -1.69E-46 |
MS.gene060587 | MS.gene89552 | 0.848849 | 4.71E-60 | -1.69E-46 |
MS.gene061176 | MS.gene89552 | 0.805987 | 1.02E-49 | -1.69E-46 |
MS.gene061177 | MS.gene89552 | 0.805761 | 1.14E-49 | -1.69E-46 |
MS.gene061178 | MS.gene89552 | 0.806162 | 9.40E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89552.t1 | MTR_1g069565 | 93.258 | 890 | 60 | 0 | 1 | 890 | 1 | 890 | 0.0 | 1654 |
MS.gene89552.t1 | MTR_1g069565 | 86.589 | 947 | 70 | 3 | 1 | 890 | 1 | 947 | 0.0 | 1598 |
MS.gene89552.t1 | MTR_1g114150 | 79.412 | 782 | 114 | 6 | 119 | 890 | 315 | 1059 | 0.0 | 1272 |
MS.gene89552.t1 | MTR_1g114130 | 79.545 | 748 | 125 | 3 | 144 | 890 | 327 | 1047 | 0.0 | 1241 |
MS.gene89552.t1 | MTR_1g114070 | 69.673 | 765 | 187 | 5 | 124 | 888 | 212 | 931 | 0.0 | 1081 |
MS.gene89552.t1 | MTR_5g065200 | 67.754 | 797 | 188 | 7 | 99 | 883 | 97 | 836 | 0.0 | 1063 |
MS.gene89552.t1 | MTR_1g114150 | 77.190 | 662 | 104 | 6 | 119 | 770 | 315 | 939 | 0.0 | 1039 |
MS.gene89552.t1 | MTR_5g047620 | 69.412 | 680 | 185 | 9 | 207 | 882 | 138 | 798 | 0.0 | 939 |
MS.gene89552.t1 | MTR_0020s0100 | 64.253 | 663 | 181 | 11 | 207 | 864 | 80 | 691 | 0.0 | 829 |
MS.gene89552.t1 | MTR_7g117445 | 42.985 | 891 | 397 | 23 | 91 | 888 | 61 | 933 | 0.0 | 664 |
MS.gene89552.t1 | MTR_7g117445 | 43.868 | 848 | 384 | 20 | 106 | 880 | 97 | 925 | 0.0 | 662 |
MS.gene89552.t1 | MTR_7g117445 | 43.148 | 883 | 391 | 23 | 91 | 880 | 61 | 925 | 0.0 | 662 |
MS.gene89552.t1 | MTR_4g132540 | 47.122 | 747 | 334 | 15 | 144 | 879 | 168 | 864 | 0.0 | 640 |
MS.gene89552.t1 | MTR_2g024270 | 47.432 | 740 | 311 | 13 | 143 | 879 | 153 | 817 | 0.0 | 620 |
MS.gene89552.t1 | MTR_2g024140 | 45.087 | 743 | 312 | 12 | 143 | 879 | 33 | 685 | 0.0 | 592 |
MS.gene89552.t1 | MTR_7g117445 | 41.107 | 849 | 388 | 24 | 65 | 820 | 36 | 865 | 0.0 | 585 |
MS.gene89552.t1 | MTR_1g083120 | 36.835 | 752 | 405 | 17 | 143 | 880 | 197 | 892 | 2.05e-148 | 462 |
MS.gene89552.t1 | MTR_1g083120 | 36.835 | 752 | 405 | 17 | 143 | 880 | 214 | 909 | 2.88e-148 | 462 |
MS.gene89552.t1 | MTR_1g008060 | 45.506 | 534 | 254 | 11 | 140 | 669 | 866 | 1366 | 1.95e-132 | 435 |
MS.gene89552.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1551 | 1686 | 1.72e-58 | 219 |
MS.gene89552.t1 | MTR_1g008060 | 45.506 | 534 | 254 | 11 | 140 | 669 | 857 | 1357 | 2.59e-132 | 434 |
MS.gene89552.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1542 | 1677 | 2.02e-58 | 218 |
MS.gene89552.t1 | MTR_2g011630 | 34.788 | 779 | 444 | 16 | 144 | 884 | 207 | 959 | 5.93e-131 | 417 |
MS.gene89552.t1 | MTR_1g083120 | 36.508 | 693 | 370 | 17 | 144 | 822 | 198 | 834 | 2.36e-130 | 412 |
MS.gene89552.t1 | MTR_1g083120 | 36.508 | 693 | 370 | 17 | 144 | 822 | 198 | 834 | 3.88e-130 | 411 |
MS.gene89552.t1 | MTR_2g011630 | 34.626 | 696 | 393 | 13 | 226 | 884 | 45 | 715 | 1.12e-118 | 377 |
MS.gene89552.t1 | MTR_2g011630 | 34.626 | 696 | 393 | 13 | 226 | 884 | 77 | 747 | 2.50e-118 | 378 |
MS.gene89552.t1 | MTR_8g062940 | 50.000 | 398 | 161 | 6 | 113 | 510 | 8 | 367 | 1.48e-116 | 360 |
MS.gene89552.t1 | MTR_2g024240 | 53.086 | 324 | 103 | 3 | 521 | 844 | 114 | 388 | 5.30e-107 | 336 |
MS.gene89552.t1 | MTR_4g091520 | 37.077 | 561 | 296 | 14 | 367 | 880 | 727 | 1277 | 1.13e-97 | 333 |
MS.gene89552.t1 | MTR_4g091520 | 33.014 | 209 | 122 | 5 | 139 | 338 | 255 | 454 | 2.06e-27 | 120 |
MS.gene89552.t1 | MTR_8g013920 | 70.414 | 169 | 31 | 3 | 546 | 714 | 40 | 189 | 1.69e-61 | 207 |
MS.gene89552.t1 | MTR_4g091520 | 41.667 | 300 | 158 | 8 | 367 | 659 | 657 | 946 | 7.38e-60 | 222 |
MS.gene89552.t1 | MTR_4g091520 | 33.014 | 209 | 122 | 5 | 139 | 338 | 255 | 454 | 1.99e-27 | 120 |
MS.gene89552.t1 | MTR_4g091520 | 55.738 | 61 | 26 | 1 | 734 | 794 | 1062 | 1121 | 2.54e-12 | 71.6 |
MS.gene89552.t1 | MTR_4g091520 | 41.667 | 300 | 158 | 8 | 367 | 659 | 692 | 981 | 8.28e-60 | 222 |
MS.gene89552.t1 | MTR_4g091520 | 33.014 | 209 | 122 | 5 | 139 | 338 | 255 | 454 | 1.95e-27 | 120 |
MS.gene89552.t1 | MTR_4g091520 | 55.738 | 61 | 26 | 1 | 734 | 794 | 1097 | 1156 | 2.38e-12 | 71.6 |
MS.gene89552.t1 | MTR_4g091520 | 41.667 | 300 | 158 | 8 | 367 | 659 | 727 | 1016 | 9.14e-60 | 222 |
MS.gene89552.t1 | MTR_4g091520 | 33.971 | 209 | 120 | 6 | 139 | 338 | 255 | 454 | 2.29e-27 | 120 |
MS.gene89552.t1 | MTR_4g091520 | 55.738 | 61 | 26 | 1 | 734 | 794 | 1132 | 1191 | 2.09e-12 | 72.0 |
MS.gene89552.t1 | MTR_0295s0020 | 61.585 | 164 | 63 | 0 | 512 | 675 | 12 | 175 | 1.40e-59 | 201 |
MS.gene89552.t1 | MTR_8g465700 | 52.247 | 178 | 81 | 1 | 456 | 633 | 4 | 177 | 1.16e-55 | 194 |
MS.gene89552.t1 | MTR_8g465720 | 77.528 | 89 | 19 | 1 | 734 | 822 | 52 | 139 | 1.70e-42 | 152 |
MS.gene89552.t1 | MTR_3g080750 | 69.841 | 63 | 19 | 0 | 633 | 695 | 86 | 148 | 1.03e-20 | 89.7 |
MS.gene89552.t1 | MTR_6g051930 | 89.655 | 29 | 3 | 0 | 275 | 303 | 45 | 73 | 6.91e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89552.t1 | AT3G07610 | 43.492 | 922 | 399 | 11 | 27 | 885 | 35 | 897 | 0.0 | 714 |
MS.gene89552.t1 | AT3G07610 | 42.295 | 941 | 405 | 12 | 27 | 885 | 35 | 919 | 0.0 | 692 |
MS.gene89552.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
MS.gene89552.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
MS.gene89552.t1 | AT1G62310 | 49.108 | 729 | 313 | 12 | 144 | 868 | 209 | 883 | 0.0 | 680 |
MS.gene89552.t1 | AT4G00990 | 43.686 | 776 | 375 | 15 | 142 | 879 | 78 | 829 | 0.0 | 604 |
MS.gene89552.t1 | AT1G11950 | 46.736 | 674 | 289 | 13 | 144 | 812 | 193 | 801 | 0.0 | 585 |
MS.gene89552.t1 | AT4G00990 | 42.483 | 725 | 355 | 15 | 142 | 828 | 78 | 778 | 6.73e-179 | 536 |
MS.gene89552.t1 | AT4G00990 | 42.817 | 717 | 348 | 15 | 142 | 820 | 78 | 770 | 4.83e-178 | 534 |
MS.gene89552.t1 | AT3G07610 | 40.237 | 676 | 321 | 9 | 27 | 639 | 35 | 690 | 3.86e-153 | 469 |
MS.gene89552.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 206 | 891 | 3.10e-116 | 377 |
MS.gene89552.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 206 | 891 | 3.10e-116 | 377 |
MS.gene89552.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 220 | 905 | 6.70e-116 | 376 |
MS.gene89552.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 220 | 905 | 6.70e-116 | 376 |
MS.gene89552.t1 | AT4G21430 | 28.599 | 521 | 321 | 8 | 140 | 657 | 223 | 695 | 4.64e-59 | 218 |
MS.gene89552.t1 | AT4G21430 | 43.791 | 153 | 85 | 1 | 734 | 886 | 768 | 919 | 7.54e-35 | 144 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGGTCATTGTTGGTTTC+TGG | 0.066287 | 1.1:+51264314 | None:intergenic |
TTTAAATATTCTTCCAATTT+AGG | 0.124269 | 1.1:+51261043 | None:intergenic |
AGTACATTGCTGACAATTAT+AGG | 0.182829 | 1.1:+51263171 | None:intergenic |
TGATAAAGAAAATAGTTTAT+TGG | 0.211724 | 1.1:-51261122 | MS.gene89552:CDS |
TTGCTCGTATGAAGCCTTTA+TGG | 0.217000 | 1.1:+51261219 | None:intergenic |
AATTTGCACCAATTCTTTAC+TGG | 0.236831 | 1.1:-51262224 | MS.gene89552:CDS |
GAGAGAGGATGTACCTAAAT+TGG | 0.270507 | 1.1:-51261056 | MS.gene89552:CDS |
GTCCTTATTGGTCTGTAATA+AGG | 0.273383 | 1.1:-51265391 | MS.gene89552:CDS |
TCTGCAGACTTGTGATTTAC+TGG | 0.286546 | 1.1:+51259421 | None:intergenic |
TTTCTGCCACGTTTCTTTGC+CGG | 0.291268 | 1.1:+51265785 | None:intergenic |
AGTGTTCGATTTGTGGAAAA+TGG | 0.293306 | 1.1:-51261193 | MS.gene89552:CDS |
TGAAGTGAAGCTGGATTCTA+AGG | 0.294563 | 1.1:-51261359 | MS.gene89552:CDS |
ACAGCATCCTGGACATTTCT+TGG | 0.294851 | 1.1:+51264483 | None:intergenic |
GATTGAAGATGTGTCCTTAT+TGG | 0.294904 | 1.1:-51265403 | MS.gene89552:CDS |
TCACAATCATCATCGGCTTT+TGG | 0.295247 | 1.1:+51263483 | None:intergenic |
CTTCGTGGTGGGAAGCTTCT+AGG | 0.295572 | 1.1:-51263681 | MS.gene89552:CDS |
CTCGCCTGGACTGGCTTAAT+TGG | 0.302310 | 1.1:-51262190 | MS.gene89552:CDS |
TGTTGCTGTTCAATGCATTC+AGG | 0.310113 | 1.1:+51265548 | None:intergenic |
GCTGGAACTGAAGAAGATTA+AGG | 0.321087 | 1.1:-51265651 | MS.gene89552:CDS |
TATGTTATACCTTCAGATTT+CGG | 0.328391 | 1.1:+51259942 | None:intergenic |
TAATTCATCTTCTTCCATAA+AGG | 0.328727 | 1.1:-51261233 | MS.gene89552:CDS |
GCAAAATAGTGTTCGATTTG+TGG | 0.335906 | 1.1:-51261200 | MS.gene89552:CDS |
AAGAAAATAGTTTATTGGTT+GGG | 0.336358 | 1.1:-51261117 | MS.gene89552:CDS |
TTTGTCTCTCCTGAAAATAT+TGG | 0.339057 | 1.1:-51259481 | MS.gene89552:CDS |
TCTGGCTGTAAAACATCTTT+AGG | 0.339519 | 1.1:+51262020 | None:intergenic |
ATTATCAAGCATGTCAATCT+TGG | 0.359732 | 1.1:+51261252 | None:intergenic |
AGAAGCATTTCAGAGAGTTC+AGG | 0.360974 | 1.1:-51261021 | MS.gene89552:CDS |
AACGGAGAAGGAAGCCGAAA+AGG | 0.363667 | 1.1:-51265756 | MS.gene89552:CDS |
CTTTCCTCAAATAAATTAGA+AGG | 0.368022 | 1.1:+51262137 | None:intergenic |
AAGAGGCTTAAGGAGGAGTA+TGG | 0.382059 | 1.1:-51260137 | MS.gene89552:intron |
ATTCTTTAGACGGTGCTCTC+TGG | 0.384591 | 1.1:-51261090 | MS.gene89552:CDS |
AGAAAATAGTTTATTGGTTG+GGG | 0.387608 | 1.1:-51261116 | MS.gene89552:CDS |
TATGGATTTGCTCAGGAGCT+TGG | 0.388333 | 1.1:-51261972 | MS.gene89552:CDS |
GTGCTCTCTGGGATATCTTT+CGG | 0.394357 | 1.1:-51261078 | MS.gene89552:CDS |
TTATCAACGTCTTTGAGCTC+TGG | 0.394811 | 1.1:+51261139 | None:intergenic |
GGGAGCTACATGGTGATAAT+CGG | 0.399614 | 1.1:-51261285 | MS.gene89552:CDS |
GCCTCCTTCTAATTTATTTG+AGG | 0.400880 | 1.1:-51262141 | MS.gene89552:CDS |
ATTTGCTCAGGAGCTTGGGC+GGG | 0.402390 | 1.1:-51261967 | MS.gene89552:CDS |
CAAGTCTGCAGAGGACAAAT+TGG | 0.404949 | 1.1:-51259410 | MS.gene89552:CDS |
TGTGAAAACTATTGATTGCT+TGG | 0.405542 | 1.1:-51263058 | MS.gene89552:CDS |
GGTTTCTTGATTATCAAGAA+TGG | 0.405728 | 1.1:+51265850 | None:intergenic |
ATACCTTCAGATTTCGGACT+TGG | 0.410789 | 1.1:+51259948 | None:intergenic |
TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.1:-51263197 | MS.gene89552:CDS |
CTCAACCTCATGGTCATTGT+TGG | 0.418130 | 1.1:+51264307 | None:intergenic |
TTTGCTCAGGAGCTTGGGCG+GGG | 0.418489 | 1.1:-51261966 | MS.gene89552:CDS |
ATGGATTTGCTCAGGAGCTT+GGG | 0.418850 | 1.1:-51261971 | MS.gene89552:CDS |
TACATACCAACTGTTAATAC+AGG | 0.419767 | 1.1:+51265284 | None:intergenic |
AACTAATGTGGAGGAGGAGC+TGG | 0.421014 | 1.1:-51265669 | MS.gene89552:CDS |
AATGTACTTGAATGTACATC+AGG | 0.426491 | 1.1:-51263156 | MS.gene89552:CDS |
GTCCTTATTACAGACCAATA+AGG | 0.427034 | 1.1:+51265389 | None:intergenic |
TCATCCAATCGTCTTAAATA+CGG | 0.427692 | 1.1:+51264254 | None:intergenic |
TGGGTACACAAAGGCTCGCC+TGG | 0.428484 | 1.1:-51262204 | MS.gene89552:CDS |
TCAAATAAAACGTCTGATCA+TGG | 0.431981 | 1.1:+51260174 | None:intergenic |
TATGAACTCGGCACAATGAC+GGG | 0.437450 | 1.1:+51262109 | None:intergenic |
AACAACACAGTTGCTTTCAC+AGG | 0.439858 | 1.1:-51265881 | MS.gene89552:CDS |
CTGGAACTGAAGAAGATTAA+GGG | 0.442023 | 1.1:-51265650 | MS.gene89552:CDS |
TTCTTTAGACGGTGCTCTCT+GGG | 0.443773 | 1.1:-51261089 | MS.gene89552:CDS |
GGACTGGCTTAATTGGCCTC+AGG | 0.444813 | 1.1:-51262183 | MS.gene89552:CDS |
TTGCAATTGCAAAGCATGCT+TGG | 0.446682 | 1.1:-51264455 | MS.gene89552:CDS |
TTGTGTACCCAGTAAAGAAT+TGG | 0.446939 | 1.1:+51262216 | None:intergenic |
TCTTGACCATTCACGAATCT+CGG | 0.449180 | 1.1:+51263545 | None:intergenic |
AATGTACATCAGGTTTAAGC+TGG | 0.453673 | 1.1:-51263146 | MS.gene89552:CDS |
GACAAAATCAAGTGCAACCT+TGG | 0.456526 | 1.1:+51259498 | None:intergenic |
TGAGAAGGAGTGAGCGTGCT+AGG | 0.457513 | 1.1:-51265724 | MS.gene89552:CDS |
ATGTCAGATGCATTCAAAAC+AGG | 0.458193 | 1.1:+51263321 | None:intergenic |
AGGAAGAAGAAGGTGGCAAT+TGG | 0.459943 | 1.1:-51265617 | MS.gene89552:CDS |
TGAAATGCACGGAATGCAAC+CGG | 0.461269 | 1.1:-51265323 | MS.gene89552:CDS |
GAAGTATGCTTCTCAGTTCA+AGG | 0.462341 | 1.1:+51263451 | None:intergenic |
ACACAAAGGCTCGCCTGGAC+TGG | 0.464280 | 1.1:-51262199 | MS.gene89552:CDS |
CTTTGTTGCTGCGAGCTTCG+TGG | 0.465758 | 1.1:-51263696 | MS.gene89552:CDS |
GCTTGATCTGGTCGAGAAGT+TGG | 0.466266 | 1.1:-51258825 | MS.gene89552:CDS |
ATTTGCACCAATTCTTTACT+GGG | 0.468225 | 1.1:-51262223 | MS.gene89552:CDS |
AAAGAAAATAGTTTATTGGT+TGG | 0.470270 | 1.1:-51261118 | MS.gene89552:CDS |
ATTCGTGAATGGTCAAGATC+TGG | 0.470424 | 1.1:-51263540 | MS.gene89552:CDS |
AGGGTATGCAAAATTTCTTC+CGG | 0.470503 | 1.1:+51265304 | None:intergenic |
TGTTGATGCTGCCGCTCCTC+CGG | 0.475825 | 1.1:-51265804 | MS.gene89552:CDS |
TTATCAAGCATGTCAATCTT+GGG | 0.478672 | 1.1:+51261253 | None:intergenic |
GCCGATGATGATTGTGATCA+TGG | 0.480443 | 1.1:-51263477 | MS.gene89552:CDS |
TCATATTGCTGAAGTGAAGC+TGG | 0.481347 | 1.1:-51261368 | MS.gene89552:CDS |
ATGTCCTCCTCTTTCAAGTC+AGG | 0.481667 | 1.1:+51264508 | None:intergenic |
ACGATTGGATGAAGAACAAA+TGG | 0.482210 | 1.1:-51264243 | MS.gene89552:CDS |
ACGGAGAAGGAAGCCGAAAA+GGG | 0.482416 | 1.1:-51265755 | MS.gene89552:CDS |
AGCTTCATCAGGAGCAGCTA+TGG | 0.485026 | 1.1:+51265829 | None:intergenic |
TGTGATTTACTGGAAGTTTG+CGG | 0.485220 | 1.1:+51259431 | None:intergenic |
TATTGCTTATGGATTTGCTC+AGG | 0.486399 | 1.1:-51261979 | MS.gene89552:CDS |
CCATTCACGAATCTCGGGTT+GGG | 0.489370 | 1.1:+51263551 | None:intergenic |
AAGATAAACTCAAACTCGAT+TGG | 0.491141 | 1.1:+51263648 | None:intergenic |
GATTTGCTCAGGAGCTTGGG+CGG | 0.493090 | 1.1:-51261968 | MS.gene89552:CDS |
TATGTATGCTATGCTTGATC+TGG | 0.494282 | 1.1:-51258837 | MS.gene89552:CDS |
TGATGAAATCAATGCTGCTC+AGG | 0.495231 | 1.1:-51265582 | MS.gene89552:CDS |
TCTTCCGTATTTAAGACGAT+TGG | 0.495391 | 1.1:-51264258 | MS.gene89552:CDS |
CTTGACCATTCACGAATCTC+GGG | 0.495468 | 1.1:+51263546 | None:intergenic |
GTAAAAGAAATGACAAGGGC+AGG | 0.498499 | 1.1:-51265350 | MS.gene89552:CDS |
CAGCTTCTGAACAAAAGTCC+AGG | 0.502730 | 1.1:+51260006 | None:intergenic |
CCTTCAGATTTCGGACTTGG+TGG | 0.506047 | 1.1:+51259951 | None:intergenic |
TGAAGAACAAATGGCTGAGA+AGG | 0.507808 | 1.1:-51264234 | MS.gene89552:CDS |
GCATCAACAGAAGCTTCATC+AGG | 0.508288 | 1.1:+51265818 | None:intergenic |
GGAGCTACATGGTGATAATC+GGG | 0.514858 | 1.1:-51261284 | MS.gene89552:CDS |
TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.1:-51263198 | MS.gene89552:CDS |
ACCATTCACGAATCTCGGGT+TGG | 0.516372 | 1.1:+51263550 | None:intergenic |
GCTCCCTCTTGTCTTGCTCA+AGG | 0.519343 | 1.1:+51261302 | None:intergenic |
GACATTGCCAAGAAATGTCC+AGG | 0.520062 | 1.1:-51264490 | MS.gene89552:CDS |
ACTTGGTGGGGACAACCAGC+TGG | 0.521593 | 1.1:+51259965 | None:intergenic |
AGATTAAGGGGAAACGTGGT+AGG | 0.523807 | 1.1:-51265637 | MS.gene89552:CDS |
TACAGTTTACATAGGAACCT+TGG | 0.524108 | 1.1:+51258591 | None:intergenic |
AAACTATTGATTGCTTGGAT+TGG | 0.524576 | 1.1:-51263053 | MS.gene89552:CDS |
GCATACCCTGTATTAACAGT+TGG | 0.527233 | 1.1:-51265290 | MS.gene89552:intron |
CTGTGGAGACTTCTGATAGT+AGG | 0.527371 | 1.1:-51263359 | MS.gene89552:CDS |
AGAACTTCTTATACTGTCCC+AGG | 0.529232 | 1.1:-51263254 | MS.gene89552:CDS |
GAATATACAGATCCTTTCAA+TGG | 0.530031 | 1.1:-51262068 | MS.gene89552:CDS |
GGACTCACCTGCACTTATCA+AGG | 0.530918 | 1.1:-51264434 | MS.gene89552:intron |
CGATTTGTGGAAAATGGAAG+TGG | 0.534768 | 1.1:-51261187 | MS.gene89552:CDS |
ATAAAACGTCTGATCATGGA+TGG | 0.535414 | 1.1:+51260178 | None:intergenic |
CCATTGCTCTCCTTTAAAGC+AGG | 0.538406 | 1.1:-51260993 | MS.gene89552:intron |
TTCAGATTTCGGACTTGGTG+GGG | 0.539205 | 1.1:+51259953 | None:intergenic |
GGATCTGTATATTCTTTGAA+CGG | 0.541600 | 1.1:+51262077 | None:intergenic |
ATGACGTAGATTTACTGCCC+TGG | 0.541910 | 1.1:+51263236 | None:intergenic |
TTGCAATTACCACAGCATCC+TGG | 0.543302 | 1.1:+51264472 | None:intergenic |
CTGCCACGTTTCTTTGCCGG+AGG | 0.549368 | 1.1:+51265788 | None:intergenic |
CGAGGGCGTGATTATCTGCA+TGG | 0.550325 | 1.1:-51263624 | MS.gene89552:CDS |
GACTTGTAGGAATTGAACCC+TGG | 0.555009 | 1.1:-51260024 | MS.gene89552:intron |
GCTTGGTATTACGTATCTGA+CGG | 0.555671 | 1.1:+51263097 | None:intergenic |
GAACTGACCTTGATAAGTGC+AGG | 0.556203 | 1.1:+51264427 | None:intergenic |
ACAACACAGTTGCTTTCACA+GGG | 0.556589 | 1.1:-51265880 | MS.gene89552:CDS |
CTTCAGATTTCGGACTTGGT+GGG | 0.557725 | 1.1:+51259952 | None:intergenic |
TAAAACGTCTGATCATGGAT+GGG | 0.558437 | 1.1:+51260179 | None:intergenic |
TGACGTAGATTTACTGCCCT+GGG | 0.558873 | 1.1:+51263237 | None:intergenic |
AATGCACGCCACATGACAAA+CGG | 0.559884 | 1.1:+51263120 | None:intergenic |
GAAATCAATGCTGCTCAGGA+GGG | 0.560506 | 1.1:-51265578 | MS.gene89552:CDS |
GCTGGGAACCGTTTGTCATG+TGG | 0.563485 | 1.1:-51263128 | MS.gene89552:CDS |
CTGGGATATCTTTCGGAGAG+AGG | 0.564748 | 1.1:-51261071 | MS.gene89552:CDS |
TTACTTAACTAATGTGGAGG+AGG | 0.564991 | 1.1:-51265675 | MS.gene89552:CDS |
AAATCAATGCTGCTCAGGAG+GGG | 0.565311 | 1.1:-51265577 | MS.gene89552:CDS |
CACGAAGCTCGCAGCAACAA+AGG | 0.565525 | 1.1:+51263697 | None:intergenic |
AATTAAGCTTCAAGTTGCTG+TGG | 0.566902 | 1.1:-51263376 | MS.gene89552:CDS |
TGAAATCAATGCTGCTCAGG+AGG | 0.567663 | 1.1:-51265579 | MS.gene89552:CDS |
GCACCTTGAGCAAGACAAGA+GGG | 0.570458 | 1.1:-51261305 | MS.gene89552:CDS |
ACAGTATAAGAAGTTCTCAC+TGG | 0.571064 | 1.1:+51263260 | None:intergenic |
AAGTGGAATATGTGATGAAA+AGG | 0.573587 | 1.1:-51261170 | MS.gene89552:CDS |
GAGGCCAATTAAGCCAGTCC+AGG | 0.578924 | 1.1:+51262186 | None:intergenic |
AATCAATGCTGCTCAGGAGG+GGG | 0.580226 | 1.1:-51265576 | MS.gene89552:CDS |
TGAGGATTACTTAACTAATG+TGG | 0.581603 | 1.1:-51265681 | MS.gene89552:CDS |
GAATAGTAGATCGTTGAATG+AGG | 0.582028 | 1.1:-51265699 | MS.gene89552:CDS |
TGTATATTCTTTGAACGGCA+AGG | 0.583089 | 1.1:+51262082 | None:intergenic |
CCTGCTTTAAAGGAGAGCAA+TGG | 0.584616 | 1.1:+51260993 | None:intergenic |
GAGTTTGAGTTTATCTTCCG+AGG | 0.584896 | 1.1:-51263642 | MS.gene89552:CDS |
TGGAACTGAAGAAGATTAAG+GGG | 0.585226 | 1.1:-51265649 | MS.gene89552:CDS |
GAAAATAGTTTATTGGTTGG+GGG | 0.586081 | 1.1:-51261115 | MS.gene89552:CDS |
GTTGCTGCGAGCTTCGTGGT+GGG | 0.586137 | 1.1:-51263692 | MS.gene89552:CDS |
GAAACGTGGTAGGAAGAAGA+AGG | 0.586757 | 1.1:-51265627 | MS.gene89552:CDS |
ATATGAACTCGGCACAATGA+CGG | 0.586817 | 1.1:+51262108 | None:intergenic |
AAGGTATCCTGACTTGAAAG+AGG | 0.587569 | 1.1:-51264515 | MS.gene89552:CDS |
AGGTTTAGAACACCATTGAA+AGG | 0.588651 | 1.1:+51262056 | None:intergenic |
CAAGACAAGAGGGAGCTACA+TGG | 0.591607 | 1.1:-51261295 | MS.gene89552:CDS |
GTCTGCAGAGGACAAATTGG+AGG | 0.593405 | 1.1:-51259407 | MS.gene89552:intron |
TGTTGCTGCGAGCTTCGTGG+TGG | 0.594415 | 1.1:-51263693 | MS.gene89552:CDS |
TGATCTGGTCGAGAAGTTGG+AGG | 0.595507 | 1.1:-51258822 | MS.gene89552:CDS |
TGATTGCTTGGATTGGTGTG+AGG | 0.595645 | 1.1:-51263046 | MS.gene89552:intron |
ACTTGGAGAGCTCAACCTCA+TGG | 0.596456 | 1.1:+51264297 | None:intergenic |
AAAACGTCTGATCATGGATG+GGG | 0.596952 | 1.1:+51260180 | None:intergenic |
CCCAACCCGAGATTCGTGAA+TGG | 0.597529 | 1.1:-51263551 | MS.gene89552:CDS |
ACGTTTCTTTGCCGGAGGAG+CGG | 0.599042 | 1.1:+51265793 | None:intergenic |
CTTTAGGCAACTTCACAGCA+AGG | 0.600321 | 1.1:+51262036 | None:intergenic |
AAGAAGGTGGCAATTGGTGT+CGG | 0.600696 | 1.1:-51265611 | MS.gene89552:CDS |
ATGTACATCAGGTTTAAGCT+GGG | 0.604955 | 1.1:-51263145 | MS.gene89552:CDS |
ACCATGATCACAATCATCAT+CGG | 0.605104 | 1.1:+51263476 | None:intergenic |
CGAGTGCTTTCGTTTGACAG+AGG | 0.605461 | 1.1:-51259458 | MS.gene89552:CDS |
GGCAGTAAATCTACGTCATG+AGG | 0.606103 | 1.1:-51263232 | MS.gene89552:CDS |
TAAAAGAAATGACAAGGGCA+GGG | 0.606870 | 1.1:-51265349 | MS.gene89552:CDS |
TCCTCAAATAAATTAGAAGG+AGG | 0.607054 | 1.1:+51262140 | None:intergenic |
TGGAATATGTGATGAAAAGG+TGG | 0.607337 | 1.1:-51261167 | MS.gene89552:CDS |
AGTTTGAGTTTATCTTCCGA+GGG | 0.609136 | 1.1:-51263641 | MS.gene89552:CDS |
GATACATCTACAGTTTACAT+AGG | 0.609345 | 1.1:+51258583 | None:intergenic |
TCTTTCAGTTTCAAAACCTG+AGG | 0.609559 | 1.1:+51262167 | None:intergenic |
AGCTTCTGAACAAAAGTCCA+GGG | 0.617796 | 1.1:+51260007 | None:intergenic |
AGCACCTTGAGCAAGACAAG+AGG | 0.618569 | 1.1:-51261306 | MS.gene89552:CDS |
GAGATAGAAGCAAAGAGACA+AGG | 0.619116 | 1.1:-51264212 | MS.gene89552:intron |
TCGGGTTGGGCAGCAGCACG+AGG | 0.619296 | 1.1:+51263564 | None:intergenic |
ATGCATTGAACAGCAACAGA+TGG | 0.621495 | 1.1:-51265543 | MS.gene89552:intron |
CGGCAAGGAAGATATGAACT+CGG | 0.631163 | 1.1:+51262097 | None:intergenic |
TCGAGAAGTTGGAGGAAGCA+AGG | 0.632086 | 1.1:-51258814 | MS.gene89552:intron |
CATACACAATAGCACAAGGA+AGG | 0.637072 | 1.1:-51263301 | MS.gene89552:CDS |
GCTCCTCCGGCAAAGAAACG+TGG | 0.637351 | 1.1:-51265791 | MS.gene89552:CDS |
CATGCAGATAATCACGCCCT+CGG | 0.639805 | 1.1:+51263625 | None:intergenic |
TTACAGGTCTGGAGAAACCA+AGG | 0.639931 | 1.1:-51258608 | MS.gene89552:intron |
CCACCAAGTCCGAAATCTGA+AGG | 0.644909 | 1.1:-51259951 | MS.gene89552:intron |
GAAGTGAAGCTGGATTCTAA+GGG | 0.652860 | 1.1:-51261358 | MS.gene89552:CDS |
AAAAGGGCGAAAGTGTGAGA+AGG | 0.653518 | 1.1:-51265739 | MS.gene89552:CDS |
CGATTTGCAGTCATGCACCA+AGG | 0.654677 | 1.1:-51259515 | MS.gene89552:intron |
CTGACATACACAATAGCACA+AGG | 0.658068 | 1.1:-51263305 | MS.gene89552:CDS |
GGGCAGGGTTGTGAAATGCA+CGG | 0.660572 | 1.1:-51265334 | MS.gene89552:CDS |
GGATGGCTTGCAGACAGTGA+TGG | 0.662046 | 1.1:-51263519 | MS.gene89552:CDS |
ATTCTTTACTGGGTACACAA+AGG | 0.662591 | 1.1:-51262213 | MS.gene89552:CDS |
ATGAACTCGGCACAATGACG+GGG | 0.667242 | 1.1:+51262110 | None:intergenic |
GTATCCTGACTTGAAAGAGG+AGG | 0.668706 | 1.1:-51264512 | MS.gene89552:CDS |
TCAATGTAAAAGAAATGACA+AGG | 0.668906 | 1.1:-51265355 | MS.gene89552:CDS |
CGTGGTGGGAAGCTTCTAGG+TGG | 0.669451 | 1.1:-51263678 | MS.gene89552:CDS |
CTACATGGTGATAATCGGGA+CGG | 0.669945 | 1.1:-51261280 | MS.gene89552:CDS |
GTGAATGGTCAAGATCTGGA+TGG | 0.677090 | 1.1:-51263536 | MS.gene89552:CDS |
AGTAAATCACAAGTCTGCAG+AGG | 0.679551 | 1.1:-51259419 | MS.gene89552:CDS |
ACATACCAACTGTTAATACA+GGG | 0.682457 | 1.1:+51265285 | None:intergenic |
GGATTACTTAACTAATGTGG+AGG | 0.684192 | 1.1:-51265678 | MS.gene89552:CDS |
AAGAAATGTCCAGGATGCTG+TGG | 0.691596 | 1.1:-51264481 | MS.gene89552:CDS |
GAACTTCTTATACTGTCCCA+GGG | 0.693482 | 1.1:-51263253 | MS.gene89552:CDS |
GGGCGTGATTATCTGCATGG+TGG | 0.701277 | 1.1:-51263621 | MS.gene89552:CDS |
CTGCATCTGACATATCACAA+TGG | 0.702155 | 1.1:+51261925 | None:intergenic |
ACGTGGTAGGAAGAAGAAGG+TGG | 0.709702 | 1.1:-51265624 | MS.gene89552:CDS |
AAGAAGATTAAGGGGAAACG+TGG | 0.711553 | 1.1:-51265641 | MS.gene89552:CDS |
CAATGTAAAAGAAATGACAA+GGG | 0.715489 | 1.1:-51265354 | MS.gene89552:CDS |
AGAAACCAACAATGACCATG+AGG | 0.730663 | 1.1:-51264312 | MS.gene89552:CDS |
TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.1:-51263196 | MS.gene89552:CDS |
CAACACAGTTGCTTTCACAG+GGG | 0.779411 | 1.1:-51265879 | MS.gene89552:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 51258597 | 51265927 | 51258597 | ID=MS.gene89552 |
chr1.1 | mRNA | 51258597 | 51265927 | 51258597 | ID=MS.gene89552.t1;Parent=MS.gene89552 |
chr1.1 | exon | 51265544 | 51265927 | 51265544 | ID=MS.gene89552.t1.exon1;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51265544 | 51265927 | 51265544 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51265291 | 51265427 | 51265291 | ID=MS.gene89552.t1.exon2;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51265291 | 51265427 | 51265291 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51264435 | 51264534 | 51264435 | ID=MS.gene89552.t1.exon3;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51264435 | 51264534 | 51264435 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51264213 | 51264351 | 51264213 | ID=MS.gene89552.t1.exon4;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51264213 | 51264351 | 51264213 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51263867 | 51263930 | 51263867 | ID=MS.gene89552.t1.exon5;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51263867 | 51263930 | 51263867 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51263047 | 51263788 | 51263047 | ID=MS.gene89552.t1.exon6;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51263047 | 51263788 | 51263047 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51261926 | 51262255 | 51261926 | ID=MS.gene89552.t1.exon7;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51261926 | 51262255 | 51261926 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51260994 | 51261404 | 51260994 | ID=MS.gene89552.t1.exon8;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51260994 | 51261404 | 51260994 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51260138 | 51260210 | 51260138 | ID=MS.gene89552.t1.exon9;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51260138 | 51260210 | 51260138 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51259952 | 51260037 | 51259952 | ID=MS.gene89552.t1.exon10;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51259952 | 51260037 | 51259952 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51259408 | 51259527 | 51259408 | ID=MS.gene89552.t1.exon11;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51259408 | 51259527 | 51259408 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51258815 | 51258873 | 51258815 | ID=MS.gene89552.t1.exon12;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51258815 | 51258873 | 51258815 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
chr1.1 | exon | 51258597 | 51258624 | 51258597 | ID=MS.gene89552.t1.exon13;Parent=MS.gene89552.t1 |
chr1.1 | CDS | 51258597 | 51258624 | 51258597 | ID=cds.MS.gene89552.t1;Parent=MS.gene89552.t1 |
Gene Sequence |
Protein sequence |