Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90380.t1 | XP_013465630.1 | 81.5 | 384 | 17 | 10 | 1 | 353 | 1 | 361 | 7.70E-161 | 576.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90380.t1 | Q9S9M8 | 54.0 | 326 | 122 | 6 | 54 | 353 | 74 | 397 | 2.6e-88 | 327.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90380.t1 | G7ZYZ4 | 81.5 | 384 | 17 | 10 | 1 | 353 | 1 | 361 | 5.6e-161 | 576.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90380.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene90380 | 0.829947 | 3.87E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene90380 | 0.815979 | 7.01E-52 | -1.69E-46 |
| MS.gene051742 | MS.gene90380 | 0.818106 | 2.33E-52 | -1.69E-46 |
| MS.gene051816 | MS.gene90380 | 0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene90380 | 0.841447 | 4.73E-58 | -1.69E-46 |
| MS.gene052143 | MS.gene90380 | 0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene052308 | MS.gene90380 | 0.858291 | 9.11E-63 | -1.69E-46 |
| MS.gene052367 | MS.gene90380 | 0.867347 | 1.46E-65 | -1.69E-46 |
| MS.gene053348 | MS.gene90380 | 0.804604 | 1.99E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene90380 | 0.801699 | 7.96E-49 | -1.69E-46 |
| MS.gene053417 | MS.gene90380 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene90380 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene90380 | 0.815153 | 1.07E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene90380 | 0.831992 | 1.22E-55 | -1.69E-46 |
| MS.gene055578 | MS.gene90380 | 0.8515 | 8.52E-61 | -1.69E-46 |
| MS.gene055579 | MS.gene90380 | 0.834801 | 2.43E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene90380 | 0.836615 | 8.43E-57 | -1.69E-46 |
| MS.gene056041 | MS.gene90380 | 0.892252 | 1.88E-74 | -1.69E-46 |
| MS.gene056042 | MS.gene90380 | 0.850801 | 1.34E-60 | -1.69E-46 |
| MS.gene056526 | MS.gene90380 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene056528 | MS.gene90380 | 0.805777 | 1.13E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene90380 | 0.817599 | 3.03E-52 | -1.69E-46 |
| MS.gene058196 | MS.gene90380 | 0.825047 | 5.80E-54 | -1.69E-46 |
| MS.gene058827 | MS.gene90380 | 0.80668 | 7.31E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene90380 | 0.832495 | 9.15E-56 | -1.69E-46 |
| MS.gene059553 | MS.gene90380 | 0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene90380 | 0.87416 | 8.39E-68 | -1.69E-46 |
| MS.gene060565 | MS.gene90380 | 0.860981 | 1.41E-63 | -1.69E-46 |
| MS.gene06064 | MS.gene90380 | 0.810598 | 1.06E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene90380 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene061099 | MS.gene90380 | 0.849212 | 3.74E-60 | -1.69E-46 |
| MS.gene061260 | MS.gene90380 | 0.850151 | 2.04E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90380.t1 | MTR_2g105390 | 81.746 | 378 | 19 | 8 | 7 | 353 | 3 | 361 | 0.0 | 579 |
| MS.gene90380.t1 | MTR_1g022370 | 42.157 | 102 | 37 | 5 | 267 | 351 | 325 | 421 | 8.60e-13 | 69.3 |
| MS.gene90380.t1 | MTR_2g020280 | 53.226 | 62 | 22 | 2 | 297 | 351 | 232 | 293 | 9.32e-13 | 68.6 |
| MS.gene90380.t1 | MTR_2g020280 | 40.000 | 100 | 48 | 4 | 259 | 351 | 298 | 392 | 1.03e-12 | 68.9 |
| MS.gene90380.t1 | MTR_1g088960 | 50.000 | 62 | 24 | 1 | 297 | 351 | 340 | 401 | 2.12e-12 | 68.2 |
| MS.gene90380.t1 | MTR_2g007930 | 40.909 | 110 | 44 | 5 | 257 | 351 | 323 | 426 | 3.57e-12 | 67.4 |
| MS.gene90380.t1 | MTR_5g020580 | 38.947 | 95 | 44 | 3 | 266 | 351 | 326 | 415 | 6.53e-12 | 66.6 |
| MS.gene90380.t1 | MTR_8g077195 | 36.697 | 109 | 54 | 4 | 252 | 351 | 309 | 411 | 1.57e-11 | 65.5 |
| MS.gene90380.t1 | MTR_1g098790 | 36.207 | 116 | 47 | 4 | 257 | 351 | 321 | 430 | 1.91e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90380.t1 | AT1G16070 | 53.988 | 326 | 122 | 6 | 54 | 353 | 74 | 397 | 2.25e-116 | 343 |
| MS.gene90380.t1 | AT1G16070 | 51.439 | 278 | 107 | 6 | 54 | 305 | 74 | 349 | 1.84e-86 | 265 |
| MS.gene90380.t1 | AT1G16070 | 49.772 | 219 | 82 | 6 | 54 | 246 | 74 | 290 | 2.38e-61 | 198 |
| MS.gene90380.t1 | AT2G18280 | 37.838 | 111 | 55 | 3 | 250 | 351 | 287 | 392 | 5.69e-14 | 72.8 |
| MS.gene90380.t1 | AT2G18280 | 37.838 | 111 | 55 | 3 | 250 | 351 | 287 | 392 | 5.69e-14 | 72.8 |
| MS.gene90380.t1 | AT2G47900 | 53.226 | 62 | 22 | 2 | 297 | 351 | 345 | 406 | 2.24e-12 | 68.2 |
| MS.gene90380.t1 | AT2G47900 | 53.226 | 62 | 22 | 2 | 297 | 351 | 344 | 405 | 2.31e-12 | 68.2 |
| MS.gene90380.t1 | AT2G47900 | 53.226 | 62 | 22 | 2 | 297 | 351 | 344 | 405 | 2.31e-12 | 68.2 |
| MS.gene90380.t1 | AT1G25280 | 31.884 | 138 | 69 | 3 | 234 | 351 | 134 | 266 | 2.98e-12 | 66.6 |
| MS.gene90380.t1 | AT1G25280 | 31.884 | 138 | 69 | 3 | 234 | 351 | 134 | 266 | 2.98e-12 | 66.6 |
| MS.gene90380.t1 | AT1G47270 | 38.776 | 98 | 43 | 3 | 266 | 351 | 295 | 387 | 3.90e-12 | 67.4 |
| MS.gene90380.t1 | AT1G47270 | 38.776 | 98 | 43 | 3 | 266 | 351 | 319 | 411 | 3.96e-12 | 67.4 |
| MS.gene90380.t1 | AT1G47270 | 38.776 | 98 | 43 | 3 | 266 | 351 | 320 | 412 | 4.04e-12 | 67.4 |
| MS.gene90380.t1 | AT1G25280 | 31.884 | 138 | 69 | 3 | 234 | 351 | 312 | 444 | 9.14e-12 | 66.2 |
| MS.gene90380.t1 | AT3G06380 | 45.902 | 61 | 27 | 1 | 297 | 351 | 227 | 287 | 5.78e-11 | 63.2 |
Find 100 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAACTCTTTGAAGATT+TGG | 0.208848 | 2.1:-574109 | MS.gene90380:CDS |
| GTTGAAAATGAGTTGGATTT+TGG | 0.248838 | 2.1:+574215 | None:intergenic |
| GTTTACTACTGCGGGGCTTA+TGG | 0.274791 | 2.1:+573620 | None:intergenic |
| GGTTCAGGTACAACACATTA+AGG | 0.279223 | 2.1:-573297 | MS.gene90380:intron |
| TTCAAACTCTTTGAAGATTT+GGG | 0.291430 | 2.1:-574108 | MS.gene90380:CDS |
| AAACTTTCAGCTCACGTTAG+AGG | 0.301321 | 2.1:-573029 | MS.gene90380:intron |
| CCTGTACATGTTGCTATTGT+AGG | 0.305231 | 2.1:+573491 | None:intergenic |
| GGTATAAAGAGAGAAGAAAT+TGG | 0.306355 | 2.1:+573938 | None:intergenic |
| TACGACCAAGGGTTTGGTTT+TGG | 0.321955 | 2.1:+574339 | None:intergenic |
| GAGCTTGACTATAGAGATAA+AGG | 0.329596 | 2.1:-573085 | MS.gene90380:CDS |
| ATTATTATTGTAGGAAGGTC+AGG | 0.351343 | 2.1:-573824 | MS.gene90380:intron |
| AAAAGTATCATCATCAGAAT+TGG | 0.355965 | 2.1:+573708 | None:intergenic |
| AGACCATTGCCTATAGATAT+TGG | 0.366407 | 2.1:-574014 | MS.gene90380:CDS |
| TTAAGGGACTGCCAATGAAT+TGG | 0.380340 | 2.1:-573280 | MS.gene90380:CDS |
| GCAACAAAGCTTTGCATCAA+TGG | 0.384089 | 2.1:+572703 | None:intergenic |
| TCCCACTCCGGCGCTTGTGG+TGG | 0.398163 | 2.1:+573773 | None:intergenic |
| GTGTACTTGTGTTATTGTTA+AGG | 0.401096 | 2.1:-573988 | MS.gene90380:CDS |
| ACCTCCCACTCCGGCGCTTG+TGG | 0.404570 | 2.1:+573770 | None:intergenic |
| AAAGACATAGATTGATGATT+GGG | 0.409134 | 2.1:+573440 | None:intergenic |
| AAAACATACGACCAAGGGTT+TGG | 0.409386 | 2.1:+574333 | None:intergenic |
| ATATCCTTTGACTGGTTACC+AGG | 0.411071 | 2.1:-572747 | MS.gene90380:CDS |
| TTCCTACCCTCCCTAGCTGC+AGG | 0.422680 | 2.1:+572889 | None:intergenic |
| CTGCTGCTCCTGCTTCCTCC+TGG | 0.428096 | 2.1:-574067 | MS.gene90380:CDS |
| TGTTAAGGAACCAACTCCTC+AGG | 0.436248 | 2.1:-573973 | MS.gene90380:CDS |
| GAAAGACATAGATTGATGAT+TGG | 0.438091 | 2.1:+573439 | None:intergenic |
| TCTACATATCAAAGACTTGT+TGG | 0.438291 | 2.1:+574034 | None:intergenic |
| GTACACCTTCCAATATCTAT+AGG | 0.439094 | 2.1:+574005 | None:intergenic |
| TAAGGGACTGCCAATGAATT+GGG | 0.444518 | 2.1:-573279 | MS.gene90380:CDS |
| GTTTGCTATGATTAGGAGAA+TGG | 0.459646 | 2.1:-572924 | MS.gene90380:intron |
| GATAAAGGAAGGCCAGGACT+TGG | 0.466820 | 2.1:-573070 | MS.gene90380:CDS |
| AAGAGGTGGTTTACTACTGC+GGG | 0.474800 | 2.1:+573612 | None:intergenic |
| GGGACGGCAGAATAGGAAAC+TGG | 0.475585 | 2.1:-573803 | MS.gene90380:CDS |
| AAGGTCAGGGACGGCAGAAT+AGG | 0.479149 | 2.1:-573810 | MS.gene90380:CDS |
| CCCACTCCGGCGCTTGTGGT+GGG | 0.479209 | 2.1:+573774 | None:intergenic |
| GAAGAATCAGAAGAAGGAAT+AGG | 0.486222 | 2.1:+574137 | None:intergenic |
| CTTCAAAGAGTTTGAAAAGT+GGG | 0.488487 | 2.1:+574115 | None:intergenic |
| CTACATATCAAAGACTTGTT+GGG | 0.489447 | 2.1:+574035 | None:intergenic |
| GTATAAAGAGAGAAGAAATT+GGG | 0.490055 | 2.1:+573939 | None:intergenic |
| CGTGTTTGTTGAAAATGAGT+TGG | 0.490098 | 2.1:+574208 | None:intergenic |
| ATCTGCAGATATCCTTTGAC+TGG | 0.494012 | 2.1:-572755 | MS.gene90380:intron |
| CCAACTCCTCAGGGTCTCTC+CGG | 0.498571 | 2.1:-573963 | MS.gene90380:CDS |
| CCGGAGAGACCCTGAGGAGT+TGG | 0.514963 | 2.1:+573963 | None:intergenic |
| AAAGTAGACCAGGAGGAAGC+AGG | 0.520011 | 2.1:+574059 | None:intergenic |
| AAGTGGGAAGAATCAGAAGA+AGG | 0.520266 | 2.1:+574131 | None:intergenic |
| AGCAGACAATCCTGCAGCTA+GGG | 0.521878 | 2.1:-572899 | MS.gene90380:CDS |
| GGAAGCCAAACATATGCAAA+AGG | 0.524760 | 2.1:+572724 | None:intergenic |
| CCTCCTACCTTGTTATAGAG+TGG | 0.527819 | 2.1:+573215 | None:intergenic |
| TATAGAGATAAAGGAAGGCC+AGG | 0.527875 | 2.1:-573076 | MS.gene90380:CDS |
| AAGCAGACAATCCTGCAGCT+AGG | 0.533935 | 2.1:-572900 | MS.gene90380:CDS |
| CTTGTTGGGTAAAGTAGACC+AGG | 0.539180 | 2.1:+574049 | None:intergenic |
| TTTGCTATGATTAGGAGAAT+GGG | 0.539684 | 2.1:-572923 | MS.gene90380:intron |
| CAAAACCAAAACCAAACCCT+TGG | 0.542341 | 2.1:-574344 | MS.gene90380:CDS |
| CTGTGGCCCACCACAAGCGC+CGG | 0.547264 | 2.1:-573780 | MS.gene90380:CDS |
| AAGTGCATCAACTATTCTCA+AGG | 0.551216 | 2.1:-573241 | MS.gene90380:CDS |
| GTTCAGGTACAACACATTAA+GGG | 0.551230 | 2.1:-573296 | MS.gene90380:intron |
| GATCTCTGGATTCCAAGTCC+TGG | 0.553307 | 2.1:+573058 | None:intergenic |
| AAGAGAGAAGAAATTGGGAC+CGG | 0.559507 | 2.1:+573944 | None:intergenic |
| AGACAATCCTGCAGCTAGGG+AGG | 0.560928 | 2.1:-572896 | MS.gene90380:CDS |
| GTCTTTCAAGAACACCAACC+AGG | 0.561985 | 2.1:-573423 | MS.gene90380:intron |
| CCTACAATAGCAACATGTAC+AGG | 0.562677 | 2.1:-573491 | MS.gene90380:CDS |
| TTATTATTGTAGGAAGGTCA+GGG | 0.564327 | 2.1:-573823 | MS.gene90380:intron |
| ACCACAAGCGCCGGAGTGGG+AGG | 0.564951 | 2.1:-573771 | MS.gene90380:CDS |
| CCCACCACAAGCGCCGGAGT+GGG | 0.568859 | 2.1:-573774 | MS.gene90380:CDS |
| TCTTCAAAGAGTTTGAAAAG+TGG | 0.573900 | 2.1:+574114 | None:intergenic |
| TTGCATGCAGAACTGTAATG+AGG | 0.573968 | 2.1:+574169 | None:intergenic |
| GACAATCCTGCAGCTAGGGA+GGG | 0.574505 | 2.1:-572895 | MS.gene90380:CDS |
| CCAAACATATGCAAAAGGCC+TGG | 0.577415 | 2.1:+572729 | None:intergenic |
| AGCTTTGTTGCATAGTGTAG+TGG | 0.581324 | 2.1:-572691 | None:intergenic |
| GCCCACCACAAGCGCCGGAG+TGG | 0.582189 | 2.1:-573775 | MS.gene90380:CDS |
| AGGAGCAGCAGCTTCAGAGT+CGG | 0.586966 | 2.1:+574079 | None:intergenic |
| ATTTGAAAACATACGACCAA+GGG | 0.596408 | 2.1:+574328 | None:intergenic |
| GTTAAGGAACCAACTCCTCA+GGG | 0.602181 | 2.1:-573972 | MS.gene90380:CDS |
| CATTGCCTATAGATATTGGA+AGG | 0.608050 | 2.1:-574010 | MS.gene90380:CDS |
| TGAAGTGAGACCTCCCACTC+CGG | 0.610091 | 2.1:+573761 | None:intergenic |
| ACAGTAGCTCAGAATCTCAA+AGG | 0.612108 | 2.1:-573739 | MS.gene90380:CDS |
| AAGGCCTGGTAACCAGTCAA+AGG | 0.614442 | 2.1:+572743 | None:intergenic |
| TACTCAACAACAGCAAGAGG+TGG | 0.614584 | 2.1:+573598 | None:intergenic |
| GTTGGCATCAATCTCGCTGA+GGG | 0.614601 | 2.1:+574304 | None:intergenic |
| CTTCCAATATCTATAGGCAA+TGG | 0.616470 | 2.1:+574011 | None:intergenic |
| ATGAATCTAACTAACCTGGT+TGG | 0.618468 | 2.1:+573409 | None:intergenic |
| GCAGAATAGGAAACTGGCTG+TGG | 0.618843 | 2.1:-573797 | MS.gene90380:CDS |
| ATCCTGCAGCTAGGGAGGGT+AGG | 0.625245 | 2.1:-572891 | MS.gene90380:CDS |
| ATGCAGAACTGTAATGAGGA+AGG | 0.628521 | 2.1:+574173 | None:intergenic |
| TTGACTATAGAGATAAAGGA+AGG | 0.630332 | 2.1:-573081 | MS.gene90380:CDS |
| GCTTACTCAACAACAGCAAG+AGG | 0.633778 | 2.1:+573595 | None:intergenic |
| GGACTGCCAATGAATTGGGA+AGG | 0.634626 | 2.1:-573275 | MS.gene90380:CDS |
| CAAGAGGTGGTTTACTACTG+CGG | 0.635758 | 2.1:+573611 | None:intergenic |
| AGTGCATCAACTATTCTCAA+GGG | 0.640841 | 2.1:-573240 | MS.gene90380:CDS |
| CAGCAGCTTCAGAGTCGGAG+TGG | 0.644616 | 2.1:+574084 | None:intergenic |
| TTGATGCCAACGTTCAGCTG+AGG | 0.653807 | 2.1:-574292 | MS.gene90380:CDS |
| TATTGTAGGAAGGTCAGGGA+CGG | 0.654971 | 2.1:-573819 | MS.gene90380:intron |
| TAGCTACAACAACAAGAACA+AGG | 0.657649 | 2.1:-574261 | MS.gene90380:CDS |
| ACTATGCCTCAGCTGAACGT+TGG | 0.657801 | 2.1:+574286 | None:intergenic |
| CGTTGGCATCAATCTCGCTG+AGG | 0.662438 | 2.1:+574303 | None:intergenic |
| GATTTGAAAACATACGACCA+AGG | 0.673412 | 2.1:+574327 | None:intergenic |
| AAGGGATCCACTCTATAACA+AGG | 0.674607 | 2.1:-573222 | MS.gene90380:intron |
| AGAGGTGGTTTACTACTGCG+GGG | 0.697959 | 2.1:+573613 | None:intergenic |
| TTGGGACCGGAGAGACCCTG+AGG | 0.711109 | 2.1:+573957 | None:intergenic |
| TTGGCATCAATCTCGCTGAG+GGG | 0.720118 | 2.1:+574305 | None:intergenic |
| GTTGGGTAAAGTAGACCAGG+AGG | 0.744497 | 2.1:+574052 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATTATTATTATTATTGT+AGG | - | chr2.1:573223-573242 | MS.gene90380:CDS | 10.0% |
| !! | TATTACTAACAATAAAATTT+GGG | - | chr2.1:573737-573756 | MS.gene90380:CDS | 10.0% |
| !! | TTATTACTAACAATAAAATT+TGG | - | chr2.1:573736-573755 | MS.gene90380:CDS | 10.0% |
| !! | ATATAATACATTACATACAT+AGG | + | chr2.1:573142-573161 | None:intergenic | 15.0% |
| !! | ATTACTAACAATAAAATTTG+GGG | - | chr2.1:573738-573757 | MS.gene90380:CDS | 15.0% |
| !! | TTAATGAAAATCAATATCAA+TGG | + | chr2.1:573912-573931 | None:intergenic | 15.0% |
| !! | TTATTATTATTATTGTAGGA+AGG | - | chr2.1:573227-573246 | MS.gene90380:CDS | 15.0% |
| !! | ATACATAGAATAGAATAGAA+TGG | + | chr2.1:573174-573193 | None:intergenic | 20.0% |
| !!! | AGGAAAATCTAATTTTGTTA+TGG | - | chr2.1:574185-574204 | MS.gene90380:CDS | 20.0% |
| !!! | GTTTTTATGTTATAACAACT+CGG | - | chr2.1:574079-574098 | MS.gene90380:CDS | 20.0% |
| ! | GTATAAAGAGAGAAGAAATT+GGG | + | chr2.1:573120-573139 | None:intergenic | 25.0% |
| ! | TTATAACATAAAAACCCTTC+CGG | + | chr2.1:574074-574093 | None:intergenic | 25.0% |
| !! | AAAGACATAGATTGATGATT+GGG | + | chr2.1:573619-573638 | None:intergenic | 25.0% |
| !! | TTCAAACTCTTTGAAGATTT+GGG | - | chr2.1:572948-572967 | MS.gene90380:intron | 25.0% |
| !! | TTTCAAACTCTTTGAAGATT+TGG | - | chr2.1:572947-572966 | MS.gene90380:intron | 25.0% |
| !!! | AAAAGTATCATCATCAGAAT+TGG | + | chr2.1:573351-573370 | None:intergenic | 25.0% |
| AATGAATTGGGAAGGAAAAA+TGG | - | chr2.1:573789-573808 | MS.gene90380:CDS | 30.0% | |
| ATTATTATTGTAGGAAGGTC+AGG | - | chr2.1:573232-573251 | MS.gene90380:CDS | 30.0% | |
| ATTTGAAAACATACGACCAA+GGG | + | chr2.1:572731-572750 | None:intergenic | 30.0% | |
| CTTCAAAGAGTTTGAAAAGT+GGG | + | chr2.1:572944-572963 | None:intergenic | 30.0% | |
| GAAAATCAATATCAATGGCT+TGG | + | chr2.1:573907-573926 | None:intergenic | 30.0% | |
| GAAAATGAATCTAACTAACC+TGG | + | chr2.1:573654-573673 | None:intergenic | 30.0% | |
| GGTATAAAGAGAGAAGAAAT+TGG | + | chr2.1:573121-573140 | None:intergenic | 30.0% | |
| TATAACATAAAAACCCTTCC+GGG | + | chr2.1:574073-574092 | None:intergenic | 30.0% | |
| TCTACATATCAAAGACTTGT+TGG | + | chr2.1:573025-573044 | None:intergenic | 30.0% | |
| TCTTCAAAGAGTTTGAAAAG+TGG | + | chr2.1:572945-572964 | None:intergenic | 30.0% | |
| TTATTATTGTAGGAAGGTCA+GGG | - | chr2.1:573233-573252 | MS.gene90380:CDS | 30.0% | |
| TTGACTATAGAGATAAAGGA+AGG | - | chr2.1:573975-573994 | MS.gene90380:CDS | 30.0% | |
| ! | AACAATAAAATTTGGGGTTC+AGG | - | chr2.1:573744-573763 | MS.gene90380:CDS | 30.0% |
| ! | ATTTTTCCTTCCCAATTCAT+TGG | + | chr2.1:573790-573809 | None:intergenic | 30.0% |
| ! | CTACATATCAAAGACTTGTT+GGG | + | chr2.1:573024-573043 | None:intergenic | 30.0% |
| ! | GAAAGACATAGATTGATGAT+TGG | + | chr2.1:573620-573639 | None:intergenic | 30.0% |
| ! | GTGTACTTGTGTTATTGTTA+AGG | - | chr2.1:573068-573087 | MS.gene90380:CDS | 30.0% |
| ! | TAACTAGTACATCATTTTGC+AGG | - | chr2.1:573536-573555 | MS.gene90380:intron | 30.0% |
| ! | TTTGCTATGATTAGGAGAAT+GGG | - | chr2.1:574133-574152 | MS.gene90380:CDS | 30.0% |
| !! | CTAATTTTGTTATGGACTAC+AGG | - | chr2.1:574193-574212 | MS.gene90380:CDS | 30.0% |
| !! | GATTTGTGTTTGCTATGATT+AGG | - | chr2.1:574125-574144 | MS.gene90380:CDS | 30.0% |
| !! | GTTGAAAATGAGTTGGATTT+TGG | + | chr2.1:572844-572863 | None:intergenic | 30.0% |
| !! | TCTGATGATGATACTTTTCT+CGG | - | chr2.1:573353-573372 | MS.gene90380:intron | 30.0% |
| !! | TTTTGGAAGAGAAACAACAT+TGG | + | chr2.1:572827-572846 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTGGTTTTGGTTT+TGG | + | chr2.1:572702-572721 | None:intergenic | 30.0% |
| AAGTGCATCAACTATTCTCA+AGG | - | chr2.1:573815-573834 | MS.gene90380:intron | 35.0% | |
| AGACCATTGCCTATAGATAT+TGG | - | chr2.1:573042-573061 | MS.gene90380:CDS | 35.0% | |
| AGTGCATCAACTATTCTCAA+GGG | - | chr2.1:573816-573835 | MS.gene90380:intron | 35.0% | |
| ATGAATCTAACTAACCTGGT+TGG | + | chr2.1:573650-573669 | None:intergenic | 35.0% | |
| CATTGCCTATAGATATTGGA+AGG | - | chr2.1:573046-573065 | MS.gene90380:CDS | 35.0% | |
| CGGTTCAAAATACCACATTT+GGG | - | chr2.1:573397-573416 | MS.gene90380:intron | 35.0% | |
| CTTAATGTGTATTGAAGAGG+CGG | - | chr2.1:574247-574266 | MS.gene90380:CDS | 35.0% | |
| CTTCCAATATCTATAGGCAA+TGG | + | chr2.1:573048-573067 | None:intergenic | 35.0% | |
| GAAGAATCAGAAGAAGGAAT+AGG | + | chr2.1:572922-572941 | None:intergenic | 35.0% | |
| GACCTTAATGTGTATTGAAG+AGG | - | chr2.1:574244-574263 | MS.gene90380:CDS | 35.0% | |
| GAGCTTGACTATAGAGATAA+AGG | - | chr2.1:573971-573990 | MS.gene90380:CDS | 35.0% | |
| GATTTGAAAACATACGACCA+AGG | + | chr2.1:572732-572751 | None:intergenic | 35.0% | |
| GTACACCTTCCAATATCTAT+AGG | + | chr2.1:573054-573073 | None:intergenic | 35.0% | |
| GTTCAGGTACAACACATTAA+GGG | - | chr2.1:573760-573779 | MS.gene90380:CDS | 35.0% | |
| TAGCTACAACAACAAGAACA+AGG | - | chr2.1:572795-572814 | MS.gene90380:intron | 35.0% | |
| TTAATGTGTATTGAAGAGGC+GGG | - | chr2.1:574248-574267 | MS.gene90380:CDS | 35.0% | |
| TTAGTTAGCAGAGAAGAATG+AGG | + | chr2.1:573519-573538 | None:intergenic | 35.0% | |
| TTGCTTTGTACTCTTGATGA+AGG | + | chr2.1:573948-573967 | None:intergenic | 35.0% | |
| ! | AAAATACCACATTTGGGATC+AGG | - | chr2.1:573403-573422 | MS.gene90380:intron | 35.0% |
| ! | AAATACCACATTTGGGATCA+GGG | - | chr2.1:573404-573423 | MS.gene90380:intron | 35.0% |
| ! | ACTCATTTTCAACAAACACG+AGG | - | chr2.1:572851-572870 | MS.gene90380:intron | 35.0% |
| ! | CGTGAGCTGAAAGTTTTTAA+CGG | + | chr2.1:574023-574042 | None:intergenic | 35.0% |
| ! | CGTGTTTGTTGAAAATGAGT+TGG | + | chr2.1:572851-572870 | None:intergenic | 35.0% |
| !! | CCAAATGTGGTATTTTGAAC+CGG | + | chr2.1:573399-573418 | None:intergenic | 35.0% |
| !! | GAAAGTTTTTAACGGATCTC+TGG | + | chr2.1:574015-574034 | None:intergenic | 35.0% |
| !! | GTTTGCTATGATTAGGAGAA+TGG | - | chr2.1:574132-574151 | MS.gene90380:CDS | 35.0% |
| AAAACATACGACCAAGGGTT+TGG | + | chr2.1:572726-572745 | None:intergenic | 40.0% | |
| AAACTTTCAGCTCACGTTAG+AGG | - | chr2.1:574027-574046 | MS.gene90380:CDS | 40.0% | |
| AAAGAAACTTCCCCTAAGTG+AGG | + | chr2.1:573869-573888 | None:intergenic | 40.0% | |
| AAGAGAGAAGAAATTGGGAC+CGG | + | chr2.1:573115-573134 | None:intergenic | 40.0% | |
| AAGGGATCCACTCTATAACA+AGG | - | chr2.1:573834-573853 | MS.gene90380:intron | 40.0% | |
| AAGTGGGAAGAATCAGAAGA+AGG | + | chr2.1:572928-572947 | None:intergenic | 40.0% | |
| ACAGTAGCTCAGAATCTCAA+AGG | - | chr2.1:573317-573336 | MS.gene90380:intron | 40.0% | |
| AGGTGGAGATTGAGAGATTT+AGG | + | chr2.1:573486-573505 | None:intergenic | 40.0% | |
| ATCTGCAGATATCCTTTGAC+TGG | - | chr2.1:574301-574320 | MS.gene90380:CDS | 40.0% | |
| ATGCAGAACTGTAATGAGGA+AGG | + | chr2.1:572886-572905 | None:intergenic | 40.0% | |
| ATTGACAGAGGAAATGGTAC+TGG | + | chr2.1:574283-574302 | None:intergenic | 40.0% | |
| CAAAACCAAAACCAAACCCT+TGG | - | chr2.1:572712-572731 | MS.gene90380:CDS | 40.0% | |
| CCGGTTCAAAATACCACATT+TGG | - | chr2.1:573396-573415 | MS.gene90380:intron | 40.0% | |
| CCTACAATAGCAACATGTAC+AGG | - | chr2.1:573565-573584 | MS.gene90380:intron | 40.0% | |
| CGCCTCTTCAATACACATTA+AGG | + | chr2.1:574249-574268 | None:intergenic | 40.0% | |
| GATCCACTCTATAACAAGGT+AGG | - | chr2.1:573838-573857 | MS.gene90380:intron | 40.0% | |
| GCAACAAAGCTTTGCATCAA+TGG | + | chr2.1:574356-574375 | None:intergenic | 40.0% | |
| GGAAGCCAAACATATGCAAA+AGG | + | chr2.1:574335-574354 | None:intergenic | 40.0% | |
| GGTTCAGGTACAACACATTA+AGG | - | chr2.1:573759-573778 | MS.gene90380:CDS | 40.0% | |
| TAAATCTCTCAATCTCCACC+TGG | - | chr2.1:573485-573504 | MS.gene90380:CDS | 40.0% | |
| TAAGGGACTGCCAATGAATT+GGG | - | chr2.1:573777-573796 | MS.gene90380:CDS | 40.0% | |
| TAATGTGTATTGAAGAGGCG+GGG | - | chr2.1:574249-574268 | MS.gene90380:CDS | 40.0% | |
| TATAGAGATAAAGGAAGGCC+AGG | - | chr2.1:573980-573999 | MS.gene90380:CDS | 40.0% | |
| TTAAGGGACTGCCAATGAAT+TGG | - | chr2.1:573776-573795 | MS.gene90380:CDS | 40.0% | |
| TTGCATGCAGAACTGTAATG+AGG | + | chr2.1:572890-572909 | None:intergenic | 40.0% | |
| ! | ATATCCTTTGACTGGTTACC+AGG | - | chr2.1:574309-574328 | MS.gene90380:CDS | 40.0% |
| ! | CCTGTACATGTTGCTATTGT+AGG | + | chr2.1:573568-573587 | None:intergenic | 40.0% |
| !!! | CAAGGGTTTGGTTTTGGTTT+TGG | + | chr2.1:572714-572733 | None:intergenic | 40.0% |
| AAGAGGTGGTTTACTACTGC+GGG | + | chr2.1:573447-573466 | None:intergenic | 45.0% | |
| AGAGGTAACATCATTGACGC+CGG | - | chr2.1:574045-574064 | MS.gene90380:CDS | 45.0% | |
| ATAAAAACCCTTCCGGGTTC+CGG | + | chr2.1:574067-574086 | None:intergenic | 45.0% | |
| CAAGAGGTGGTTTACTACTG+CGG | + | chr2.1:573448-573467 | None:intergenic | 45.0% | |
| CCAAACATATGCAAAAGGCC+TGG | + | chr2.1:574330-574349 | None:intergenic | 45.0% | |
| CCACTCTATAACAAGGTAGG+AGG | - | chr2.1:573841-573860 | MS.gene90380:intron | 45.0% | |
| CTGCAGATTGACAGAGGAAA+TGG | + | chr2.1:574289-574308 | None:intergenic | 45.0% | |
| CTTGTTGGGTAAAGTAGACC+AGG | + | chr2.1:573010-573029 | None:intergenic | 45.0% | |
| GATATCCCTGATCCCAAATG+TGG | + | chr2.1:573412-573431 | None:intergenic | 45.0% | |
| GCTTACTCAACAACAGCAAG+AGG | + | chr2.1:573464-573483 | None:intergenic | 45.0% | |
| GGATATCTGCAGATTGACAG+AGG | + | chr2.1:574295-574314 | None:intergenic | 45.0% | |
| GTCTTTCAAGAACACCAACC+AGG | - | chr2.1:573633-573652 | MS.gene90380:CDS | 45.0% | |
| GTTAAGGAACCAACTCCTCA+GGG | - | chr2.1:573084-573103 | MS.gene90380:CDS | 45.0% | |
| GTTAGCAGAGAAGAATGAGG+CGG | + | chr2.1:573516-573535 | None:intergenic | 45.0% | |
| TACTCAACAACAGCAAGAGG+TGG | + | chr2.1:573461-573480 | None:intergenic | 45.0% | |
| TATTGTAGGAAGGTCAGGGA+CGG | - | chr2.1:573237-573256 | MS.gene90380:CDS | 45.0% | |
| TGTTAAGGAACCAACTCCTC+AGG | - | chr2.1:573083-573102 | MS.gene90380:CDS | 45.0% | |
| ! | CCAGGCCTTTTGCATATGTT+TGG | - | chr2.1:574327-574346 | MS.gene90380:CDS | 45.0% |
| ! | CCTCCTACCTTGTTATAGAG+TGG | + | chr2.1:573844-573863 | None:intergenic | 45.0% |
| ! | TTTTGAACCGGTGAGGTTAG+CGG | + | chr2.1:573387-573406 | None:intergenic | 45.0% |
| !! | TACGACCAAGGGTTTGGTTT+TGG | + | chr2.1:572720-572739 | None:intergenic | 45.0% |
| !! | TGTGGTATTTTGAACCGGTG+AGG | + | chr2.1:573394-573413 | None:intergenic | 45.0% |
| AAAGTAGACCAGGAGGAAGC+AGG | + | chr2.1:573000-573019 | None:intergenic | 50.0% | |
| AAGCAGACAATCCTGCAGCT+AGG | - | chr2.1:574156-574175 | MS.gene90380:CDS | 50.0% | |
| AAGGCCTGGTAACCAGTCAA+AGG | + | chr2.1:574316-574335 | None:intergenic | 50.0% | |
| ACAGTTACCGCTAACCTCAC+CGG | - | chr2.1:573377-573396 | MS.gene90380:intron | 50.0% | |
| ACTATGCCTCAGCTGAACGT+TGG | + | chr2.1:572773-572792 | None:intergenic | 50.0% | |
| AGAGGTGGTTTACTACTGCG+GGG | + | chr2.1:573446-573465 | None:intergenic | 50.0% | |
| AGCAGACAATCCTGCAGCTA+GGG | - | chr2.1:574157-574176 | MS.gene90380:CDS | 50.0% | |
| GATAAAGGAAGGCCAGGACT+TGG | - | chr2.1:573986-574005 | MS.gene90380:CDS | 50.0% | |
| GATCTCTGGATTCCAAGTCC+TGG | + | chr2.1:574001-574020 | None:intergenic | 50.0% | |
| GCAGAATAGGAAACTGGCTG+TGG | - | chr2.1:573259-573278 | MS.gene90380:CDS | 50.0% | |
| GGACTGCCAATGAATTGGGA+AGG | - | chr2.1:573781-573800 | MS.gene90380:CDS | 50.0% | |
| GTTGGCATCAATCTCGCTGA+GGG | + | chr2.1:572755-572774 | None:intergenic | 50.0% | |
| GTTGGGTAAAGTAGACCAGG+AGG | + | chr2.1:573007-573026 | None:intergenic | 50.0% | |
| GTTTACTACTGCGGGGCTTA+TGG | + | chr2.1:573439-573458 | None:intergenic | 50.0% | |
| TTGATGCCAACGTTCAGCTG+AGG | - | chr2.1:572764-572783 | MS.gene90380:intron | 50.0% | |
| TTGGCATCAATCTCGCTGAG+GGG | + | chr2.1:572754-572773 | None:intergenic | 50.0% | |
| AAGGTCAGGGACGGCAGAAT+AGG | - | chr2.1:573246-573265 | MS.gene90380:CDS | 55.0% | |
| ACATCATTGACGCCGGAACC+CGG | - | chr2.1:574052-574071 | MS.gene90380:CDS | 55.0% | |
| AGACAATCCTGCAGCTAGGG+AGG | - | chr2.1:574160-574179 | MS.gene90380:CDS | 55.0% | |
| AGGAGCAGCAGCTTCAGAGT+CGG | + | chr2.1:572980-572999 | None:intergenic | 55.0% | |
| AGGTAGGAGGAGCCTCACTT+AGG | - | chr2.1:573854-573873 | MS.gene90380:intron | 55.0% | |
| CGTTGGCATCAATCTCGCTG+AGG | + | chr2.1:572756-572775 | None:intergenic | 55.0% | |
| GACAATCCTGCAGCTAGGGA+GGG | - | chr2.1:574161-574180 | MS.gene90380:CDS | 55.0% | |
| GGGACGGCAGAATAGGAAAC+TGG | - | chr2.1:573253-573272 | MS.gene90380:CDS | 55.0% | |
| GGTAGGAGGAGCCTCACTTA+GGG | - | chr2.1:573855-573874 | MS.gene90380:intron | 55.0% | |
| GTAGGAGGAGCCTCACTTAG+GGG | - | chr2.1:573856-573875 | MS.gene90380:intron | 55.0% | |
| TGAAGTGAGACCTCCCACTC+CGG | + | chr2.1:573298-573317 | None:intergenic | 55.0% | |
| ATCCTGCAGCTAGGGAGGGT+AGG | - | chr2.1:574165-574184 | MS.gene90380:CDS | 60.0% | |
| ATTGACGCCGGAACCCGGAA+GGG | - | chr2.1:574057-574076 | MS.gene90380:CDS | 60.0% | |
| CAGAGAAGAATGAGGCGGCC+AGG | + | chr2.1:573511-573530 | None:intergenic | 60.0% | |
| CAGCAGCTTCAGAGTCGGAG+TGG | + | chr2.1:572975-572994 | None:intergenic | 60.0% | |
| CCAACTCCTCAGGGTCTCTC+CGG | - | chr2.1:573093-573112 | MS.gene90380:CDS | 60.0% | |
| CTCTCAATCTCCACCTGGCC+TGG | - | chr2.1:573490-573509 | MS.gene90380:CDS | 60.0% | |
| TTCCTACCCTCCCTAGCTGC+AGG | + | chr2.1:574170-574189 | None:intergenic | 60.0% | |
| AAGAATGAGGCGGCCAGGCC+AGG | + | chr2.1:573506-573525 | None:intergenic | 65.0% | |
| CATTGACGCCGGAACCCGGA+AGG | - | chr2.1:574056-574075 | MS.gene90380:CDS | 65.0% | |
| CCGGAGAGACCCTGAGGAGT+TGG | + | chr2.1:573096-573115 | None:intergenic | 65.0% | |
| CTGCTGCTCCTGCTTCCTCC+TGG | - | chr2.1:572989-573008 | MS.gene90380:intron | 65.0% | |
| TTGGGACCGGAGAGACCCTG+AGG | + | chr2.1:573102-573121 | None:intergenic | 65.0% | |
| AATGAGGCGGCCAGGCCAGG+TGG | + | chr2.1:573503-573522 | None:intergenic | 70.0% | |
| ACCTCCCACTCCGGCGCTTG+TGG | + | chr2.1:573289-573308 | None:intergenic | 70.0% | |
| CCCACTCCGGCGCTTGTGGT+GGG | + | chr2.1:573285-573304 | None:intergenic | 70.0% | |
| CTGTGGCCCACCACAAGCGC+CGG | - | chr2.1:573276-573295 | MS.gene90380:CDS | 70.0% | |
| TCCCACTCCGGCGCTTGTGG+TGG | + | chr2.1:573286-573305 | None:intergenic | 70.0% | |
| !! | ACCACAAGCGCCGGAGTGGG+AGG | - | chr2.1:573285-573304 | MS.gene90380:CDS | 70.0% |
| !! | CCCACCACAAGCGCCGGAGT+GGG | - | chr2.1:573282-573301 | MS.gene90380:CDS | 70.0% |
| !! | GCCCACCACAAGCGCCGGAG+TGG | - | chr2.1:573281-573300 | MS.gene90380:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 572694 | 574384 | 572694 | ID=MS.gene90380 |
| chr2.1 | mRNA | 572694 | 574384 | 572694 | ID=MS.gene90380.t1;Parent=MS.gene90380 |
| chr2.1 | exon | 573935 | 574384 | 573935 | ID=MS.gene90380.t1.exon1;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 573935 | 574384 | 573935 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 573699 | 573833 | 573699 | ID=MS.gene90380.t1.exon2;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 573699 | 573833 | 573699 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 573601 | 573653 | 573601 | ID=MS.gene90380.t1.exon3;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 573601 | 573653 | 573601 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 573424 | 573520 | 573424 | ID=MS.gene90380.t1.exon4;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 573424 | 573520 | 573424 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 573223 | 573312 | 573223 | ID=MS.gene90380.t1.exon5;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 573223 | 573312 | 573223 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 573030 | 573122 | 573030 | ID=MS.gene90380.t1.exon6;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 573030 | 573122 | 573030 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 572864 | 572931 | 572864 | ID=MS.gene90380.t1.exon7;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 572864 | 572931 | 572864 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| chr2.1 | exon | 572694 | 572769 | 572694 | ID=MS.gene90380.t1.exon8;Parent=MS.gene90380.t1 |
| chr2.1 | CDS | 572694 | 572769 | 572694 | ID=cds.MS.gene90380.t1;Parent=MS.gene90380.t1 |
| Gene Sequence |
| Protein sequence |
