Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06064.t1 | XP_013447183.1 | 96.1 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 2.30E-121 | 444.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06064.t1 | Q499B3 | 34.5 | 145 | 83 | 3 | 83 | 225 | 334 | 468 | 1.9e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06064.t1 | A0A072U5T9 | 96.1 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 1.6e-121 | 444.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055957 | MS.gene06064 | 0.832434 | 9.47E-56 | -1.69E-46 |
| MS.gene06064 | MS.gene063037 | 0.803529 | 3.34E-49 | -1.69E-46 |
| MS.gene06064 | MS.gene07051 | 0.822593 | 2.18E-53 | -1.69E-46 |
| MS.gene06064 | MS.gene072702 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene06064 | MS.gene08836 | 0.817956 | 2.52E-52 | -1.69E-46 |
| MS.gene06064 | MS.gene08988 | 0.805662 | 1.20E-49 | -1.69E-46 |
| MS.gene06064 | MS.gene09258 | 0.80443 | 2.17E-49 | -1.69E-46 |
| MS.gene06064 | MS.gene09540 | 0.817107 | 3.91E-52 | -1.69E-46 |
| MS.gene06064 | MS.gene09543 | 0.820421 | 6.92E-53 | -1.69E-46 |
| MS.gene06064 | MS.gene22500 | 0.817889 | 2.61E-52 | -1.69E-46 |
| MS.gene06064 | MS.gene23888 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene06064 | MS.gene28807 | 0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene06064 | MS.gene28867 | 0.814964 | 1.18E-51 | -1.69E-46 |
| MS.gene06064 | MS.gene35150 | 0.806206 | 9.20E-50 | -1.69E-46 |
| MS.gene06064 | MS.gene36485 | 0.802781 | 4.77E-49 | -1.69E-46 |
| MS.gene06064 | MS.gene40405 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene06064 | MS.gene47007 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene06064 | MS.gene50484 | 0.814389 | 1.58E-51 | -1.69E-46 |
| MS.gene06064 | MS.gene50736 | 0.83692 | 7.05E-57 | -1.69E-46 |
| MS.gene06064 | MS.gene52703 | 0.831387 | 1.72E-55 | -1.69E-46 |
| MS.gene06064 | MS.gene57751 | 0.828217 | 1.02E-54 | -1.69E-46 |
| MS.gene06064 | MS.gene58234 | 0.830992 | 2.15E-55 | -1.69E-46 |
| MS.gene06064 | MS.gene58754 | 0.834759 | 2.49E-56 | -1.69E-46 |
| MS.gene06064 | MS.gene58835 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene06064 | MS.gene63320 | 0.810478 | 1.13E-50 | -1.69E-46 |
| MS.gene06064 | MS.gene90302 | 0.80425 | 2.36E-49 | -1.69E-46 |
| MS.gene06064 | MS.gene90380 | 0.810598 | 1.06E-50 | -1.69E-46 |
| MS.gene06064 | MS.gene97703 | 0.802405 | 5.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06064.t1 | MTR_8g099380 | 96.087 | 230 | 9 | 0 | 1 | 230 | 1 | 230 | 5.46e-167 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06064.t1 | AT5G41850 | 69.507 | 223 | 63 | 3 | 7 | 228 | 2 | 220 | 1.03e-113 | 325 |
Find 63 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGATTAAACCTTTAA+TGG | 0.116000 | 4.1:-4714785 | None:intergenic |
| ATGCTTGGGCTACCCATTAA+AGG | 0.224197 | 4.1:+4714772 | MS.gene06064:CDS |
| CCATTGTTCCAGGGAATTAA+TGG | 0.232308 | 4.1:+4715603 | MS.gene06064:intron |
| TCATCATCCTTCAAGAGATT+TGG | 0.295222 | 4.1:-4716065 | None:intergenic |
| CCTTGAACCCATTGATTTGC+CGG | 0.305697 | 4.1:-4714576 | None:intergenic |
| GTGCTCCTTCCTCTTCTGAT+TGG | 0.352949 | 4.1:+4713878 | MS.gene06064:CDS |
| TTCATTTCCAAATCTCTTGA+AGG | 0.365586 | 4.1:+4716058 | MS.gene06064:CDS |
| GGGAATTAATGGTGCGGTTA+GGG | 0.366007 | 4.1:+4715614 | MS.gene06064:intron |
| ATAAAGATTAAACCTTTAAT+GGG | 0.373740 | 4.1:-4714784 | None:intergenic |
| AGGGAATTAATGGTGCGGTT+AGG | 0.374671 | 4.1:+4715613 | MS.gene06064:intron |
| TGTTTCCGCTGTACTATGCT+TGG | 0.395576 | 4.1:+4714757 | MS.gene06064:CDS |
| CGTACTGGCCGGCAAATCAA+TGG | 0.407387 | 4.1:+4714568 | MS.gene06064:CDS |
| CGCTTTCATCTTCTTTCGAG+TGG | 0.442942 | 4.1:-4715912 | None:intergenic |
| TTTCATTTGCTAGACATGTC+TGG | 0.446481 | 4.1:+4714449 | MS.gene06064:intron |
| CCCTGGTCATCCTCTCGTAC+TGG | 0.456451 | 4.1:+4714553 | MS.gene06064:CDS |
| AATGAGCTGCATGTCATTGA+TGG | 0.457649 | 4.1:+4715938 | MS.gene06064:CDS |
| GTTTCCGCTGTACTATGCTT+GGG | 0.459114 | 4.1:+4714758 | MS.gene06064:CDS |
| CCTCTTCTGATTGGATGCTA+AGG | 0.463132 | 4.1:+4713887 | MS.gene06064:CDS |
| GTTATCTTCGCTCACGGTGC+CGG | 0.468658 | 4.1:+4713856 | MS.gene06064:CDS |
| TGACGACGTCGCTTTGCAGC+AGG | 0.475549 | 4.1:-4713778 | None:intergenic |
| GACAACATCAGTAGCATGTA+AGG | 0.476523 | 4.1:-4714023 | None:intergenic |
| TCTACCTGGACAAACATTGT+AGG | 0.478984 | 4.1:-4715663 | None:intergenic |
| CCGGCAAATCAATGGGTTCA+AGG | 0.480096 | 4.1:+4714576 | MS.gene06064:CDS |
| GCGGCGTTGATGATTCAATC+TGG | 0.483143 | 4.1:-4713813 | None:intergenic |
| TTATTGTAGAGTTGGATGTA+TGG | 0.486088 | 4.1:+4714712 | MS.gene06064:intron |
| CTTGAGCAGGGCAGCAAGGA+TGG | 0.491768 | 4.1:+4715863 | MS.gene06064:intron |
| TCCTCCTAAGGCAGAAAAGT+TGG | 0.503669 | 4.1:+4714487 | MS.gene06064:CDS |
| AGTTCCTACAATGTTTGTCC+AGG | 0.535493 | 4.1:+4715659 | MS.gene06064:CDS |
| TGGATGTATGGTGGCTAGCA+TGG | 0.536453 | 4.1:+4714724 | MS.gene06064:CDS |
| TAGATGGAAGAGTATGTTGA+AGG | 0.539873 | 4.1:+4713997 | MS.gene06064:intron |
| GTACTGGCCGGCAAATCAAT+GGG | 0.541862 | 4.1:+4714569 | MS.gene06064:CDS |
| TCCTAAGGCAGAAAAGTTGG+TGG | 0.544615 | 4.1:+4714490 | MS.gene06064:CDS |
| TTTGGAAATGAAAGCGGCAA+TGG | 0.545771 | 4.1:-4716047 | None:intergenic |
| GGCCTTCACAGCAGCAACTT+CGG | 0.546141 | 4.1:-4716026 | None:intergenic |
| AAGAAGCATCTGCAAGCAAA+GGG | 0.546181 | 4.1:+4715986 | MS.gene06064:CDS |
| GCCAGTACGAGAGGATGACC+AGG | 0.550318 | 4.1:-4714554 | None:intergenic |
| ATCAGAAGAGGAAGGAGCAC+CGG | 0.562808 | 4.1:-4713875 | None:intergenic |
| TGCAGCAGGCAATGAATCCA+TGG | 0.567186 | 4.1:-4713764 | None:intergenic |
| GCCGCTAAAACAACTGTCAC+CGG | 0.570168 | 4.1:+4713831 | MS.gene06064:CDS |
| GCAAGCAAAGGGTTCCACTC+AGG | 0.581589 | 4.1:+4715997 | MS.gene06064:CDS |
| CATTTGCTAGACATGTCTGG+TGG | 0.582466 | 4.1:+4714452 | MS.gene06064:intron |
| GGTCATCCTCTCGTACTGGC+CGG | 0.583683 | 4.1:+4714557 | MS.gene06064:CDS |
| GAAACTGCAACTAAGTTCCC+TGG | 0.588797 | 4.1:+4714536 | MS.gene06064:CDS |
| TAAGAAGCATCTGCAAGCAA+AGG | 0.590904 | 4.1:+4715985 | MS.gene06064:CDS |
| TTGTAGAGTTGGATGTATGG+TGG | 0.595979 | 4.1:+4714715 | MS.gene06064:intron |
| TCTTACCAACCTTAAAAGAG+TGG | 0.598472 | 4.1:-4715967 | None:intergenic |
| AAGAGATTTGGAAATGAAAG+CGG | 0.606643 | 4.1:-4716053 | None:intergenic |
| CCGGTGGTTATCTTCGCTCA+CGG | 0.607459 | 4.1:+4713850 | MS.gene06064:CDS |
| ATTTGCTAGACATGTCTGGT+GGG | 0.610571 | 4.1:+4714453 | MS.gene06064:intron |
| GTGGTCTCTAACTTCTCAAG+TGG | 0.615459 | 4.1:-4715893 | None:intergenic |
| AGCCGAAGTTGCTGCTGTGA+AGG | 0.616142 | 4.1:+4716024 | MS.gene06064:CDS |
| GATTTGCCGGCCAGTACGAG+AGG | 0.620100 | 4.1:-4714563 | None:intergenic |
| CCTTAGCATCCAATCAGAAG+AGG | 0.629184 | 4.1:-4713887 | None:intergenic |
| GTTTCATTCACATATCGTGA+AGG | 0.636747 | 4.1:+4714514 | MS.gene06064:CDS |
| AGCATCCAATCAGAAGAGGA+AGG | 0.643596 | 4.1:-4713883 | None:intergenic |
| GTGTCTTGAGCAGGGCAGCA+AGG | 0.654400 | 4.1:+4715859 | MS.gene06064:intron |
| CCGTGAGCGAAGATAACCAC+CGG | 0.665893 | 4.1:-4713850 | None:intergenic |
| GAGCTGCATGTCATTGATGG+TGG | 0.695412 | 4.1:+4715941 | MS.gene06064:CDS |
| GTTCCAGGGAATTAATGGTG+CGG | 0.699484 | 4.1:+4715608 | MS.gene06064:intron |
| GCTAAAACAACTGTCACCGG+TGG | 0.706372 | 4.1:+4713834 | MS.gene06064:CDS |
| AACTTCGGCTTCATCCTGAG+TGG | 0.718969 | 4.1:-4716011 | None:intergenic |
| CCAGTACGAGAGGATGACCA+GGG | 0.741907 | 4.1:-4714553 | None:intergenic |
| GTAGCCCAAGCATAGTACAG+CGG | 0.776936 | 4.1:-4714762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGAAGTTTTAATT+TGG | + | chr4.1:4714619-4714638 | MS.gene06064:intron | 10.0% |
| !! | AAACTTTAATTATCAACAAA+GGG | - | chr4.1:4715202-4715221 | None:intergenic | 15.0% |
| !! | AAATGAATGAATAAAGAAAA+TGG | - | chr4.1:4713915-4713934 | None:intergenic | 15.0% |
| !! | ATAAAGATTAAACCTTTAAT+GGG | - | chr4.1:4714787-4714806 | None:intergenic | 15.0% |
| !! | TAAACTTTAATTATCAACAA+AGG | - | chr4.1:4715203-4715222 | None:intergenic | 15.0% |
| !! | TGTTGAATCTTATTATAATT+AGG | + | chr4.1:4713958-4713977 | MS.gene06064:intron | 15.0% |
| !! | AAAAAATCAACGAACTTATA+AGG | - | chr4.1:4714304-4714323 | None:intergenic | 20.0% |
| !! | ATAAGTTAAATGAAATGGAT+TGG | - | chr4.1:4714082-4714101 | None:intergenic | 20.0% |
| !! | CATAAAGATTAAACCTTTAA+TGG | - | chr4.1:4714788-4714807 | None:intergenic | 20.0% |
| !! | GAATGATAAGTTAAATGAAA+TGG | - | chr4.1:4714087-4714106 | None:intergenic | 20.0% |
| !! | TTTCTATAGCATTTATTCAT+AGG | + | chr4.1:4715264-4715283 | MS.gene06064:intron | 20.0% |
| !!! | ATTTTCAACAAAATCACAAA+TGG | - | chr4.1:4714943-4714962 | None:intergenic | 20.0% |
| !!! | CATTTATTTTATTGTAGAGT+TGG | + | chr4.1:4714704-4714723 | MS.gene06064:intron | 20.0% |
| !!! | TGCTAGCAATAATTTTTATT+AGG | - | chr4.1:4714669-4714688 | None:intergenic | 20.0% |
| !!! | TTCGTTGATTTTTTTTATCT+AGG | + | chr4.1:4714310-4714329 | MS.gene06064:intron | 20.0% |
| !!! | TTTTCAACAAAATCACAAAT+GGG | - | chr4.1:4714942-4714961 | None:intergenic | 20.0% |
| ! | AAAATTCATTAGATTCGCTT+CGG | - | chr4.1:4714431-4714450 | None:intergenic | 25.0% |
| ! | AAGATATCATAGAGATCTTA+TGG | - | chr4.1:4714195-4714214 | None:intergenic | 25.0% |
| ! | ACATCAAACAAGTAATCTAA+AGG | - | chr4.1:4714393-4714412 | None:intergenic | 25.0% |
| ! | CACTTGTATATTTATCCAAA+CGG | + | chr4.1:4714276-4714295 | MS.gene06064:intron | 25.0% |
| ! | TTTCAACAAAATCACAAATG+GGG | - | chr4.1:4714941-4714960 | None:intergenic | 25.0% |
| !! | GTAATGCACAGATAAATTTT+TGG | + | chr4.1:4715814-4715833 | MS.gene06064:intron | 25.0% |
| !!! | TTAAATGAAATGGATTGGAT+TGG | - | chr4.1:4714077-4714096 | None:intergenic | 25.0% |
| AAGAGATTTGGAAATGAAAG+CGG | - | chr4.1:4716056-4716075 | None:intergenic | 30.0% | |
| ATTACAGAATGTCATACTGA+TGG | - | chr4.1:4715799-4715818 | None:intergenic | 30.0% | |
| ATTGATGAAGTTGTCATTCT+TGG | + | chr4.1:4715328-4715347 | MS.gene06064:intron | 30.0% | |
| ATTTCCACATATCACATTCT+AGG | - | chr4.1:4715098-4715117 | None:intergenic | 30.0% | |
| CATTTATTCATAGGTGAGTT+TGG | + | chr4.1:4715273-4715292 | MS.gene06064:intron | 30.0% | |
| GAAACTGTCATTACTACATA+TGG | + | chr4.1:4715536-4715555 | MS.gene06064:intron | 30.0% | |
| TTATTGTAGAGTTGGATGTA+TGG | + | chr4.1:4714712-4714731 | MS.gene06064:intron | 30.0% | |
| TTCATTTCCAAATCTCTTGA+AGG | + | chr4.1:4716058-4716077 | MS.gene06064:CDS | 30.0% | |
| TTTCCACATATCACATTCTA+GGG | - | chr4.1:4715097-4715116 | None:intergenic | 30.0% | |
| ! | GTTTTCTGTTCAGAAATTGT+TGG | + | chr4.1:4715451-4715470 | MS.gene06064:intron | 30.0% |
| ! | TATTTTCTCCATGTGATAGA+TGG | + | chr4.1:4713981-4714000 | MS.gene06064:intron | 30.0% |
| ! | TTCATACACTGTTAGTCTAT+TGG | + | chr4.1:4715747-4715766 | MS.gene06064:intron | 30.0% |
| ! | TTTTCCTCTTCATTTCTTCA+TGG | + | chr4.1:4715395-4715414 | MS.gene06064:intron | 30.0% |
| !! | AAACTAAGATGACTAGCTTA+AGG | - | chr4.1:4715299-4715318 | None:intergenic | 30.0% |
| !! | TTAGTTTTCTTAGGGTGTTT+TGG | + | chr4.1:4715506-4715525 | MS.gene06064:intron | 30.0% |
| !!! | TTGGTGCATTAGTTTTCTTA+GGG | + | chr4.1:4715498-4715517 | MS.gene06064:intron | 30.0% |
| ACAAAATCACAAATGGGGTA+AGG | - | chr4.1:4714936-4714955 | None:intergenic | 35.0% | |
| ACTAACAGTGTATGAAACTG+AGG | - | chr4.1:4715743-4715762 | None:intergenic | 35.0% | |
| AGAGCTCTCAAATATGTACT+AGG | + | chr4.1:4715360-4715379 | MS.gene06064:intron | 35.0% | |
| ATACTCTTCCATCTATCACA+TGG | - | chr4.1:4713992-4714011 | None:intergenic | 35.0% | |
| ATTCGACATCCACTTTAGTT+TGG | + | chr4.1:4714961-4714980 | MS.gene06064:intron | 35.0% | |
| ATTTCTTCAAACTGTTGGAC+CGG | + | chr4.1:4715018-4715037 | MS.gene06064:intron | 35.0% | |
| CTTCCATTTCTTCAAACTGT+TGG | + | chr4.1:4715013-4715032 | MS.gene06064:intron | 35.0% | |
| GATAAGCTGAAAATCAAGGA+TGG | - | chr4.1:4715052-4715071 | None:intergenic | 35.0% | |
| GATTGGAAAGAAACTCACAA+GGG | - | chr4.1:4714060-4714079 | None:intergenic | 35.0% | |
| GGAAATTGAAAACACATCCA+TGG | - | chr4.1:4715778-4715797 | None:intergenic | 35.0% | |
| GTAATCTAAAGGTTCACACT+CGG | - | chr4.1:4714382-4714401 | None:intergenic | 35.0% | |
| GTTTCATTCACATATCGTGA+AGG | + | chr4.1:4714514-4714533 | MS.gene06064:CDS | 35.0% | |
| TAGAAAAAGAGAACTCTACC+TGG | - | chr4.1:4715680-4715699 | None:intergenic | 35.0% | |
| TCTTACCAACCTTAAAAGAG+TGG | - | chr4.1:4715970-4715989 | None:intergenic | 35.0% | |
| TGCAGATAAGCTGAAAATCA+AGG | - | chr4.1:4715056-4715075 | None:intergenic | 35.0% | |
| TGGACATATATGTTTGCATG+AGG | + | chr4.1:4714639-4714658 | MS.gene06064:intron | 35.0% | |
| TTAGTCTATTGGATGAACCA+TGG | + | chr4.1:4715758-4715777 | MS.gene06064:intron | 35.0% | |
| TTCCACATATCACATTCTAG+GGG | - | chr4.1:4715096-4715115 | None:intergenic | 35.0% | |
| ! | AATTTTGTTGCCATTGTTCC+AGG | + | chr4.1:4715593-4715612 | MS.gene06064:intron | 35.0% |
| ! | ATTTTGTTGCCATTGTTCCA+GGG | + | chr4.1:4715594-4715613 | MS.gene06064:intron | 35.0% |
| ! | TAGATGGAAGAGTATGTTGA+AGG | + | chr4.1:4713997-4714016 | MS.gene06064:intron | 35.0% |
| ! | TCTAACTTGTCATTGCAGTA+TGG | + | chr4.1:4715696-4715715 | MS.gene06064:intron | 35.0% |
| ! | TTCGACATCCACTTTAGTTT+GGG | + | chr4.1:4714962-4714981 | MS.gene06064:intron | 35.0% |
| ! | TTTCATTTGCTAGACATGTC+TGG | + | chr4.1:4714449-4714468 | MS.gene06064:intron | 35.0% |
| !! | TGAAGAAATGGAAGTACTGA+AGG | - | chr4.1:4715007-4715026 | None:intergenic | 35.0% |
| !!! | GTTGGTGCATTAGTTTTCTT+AGG | + | chr4.1:4715497-4715516 | MS.gene06064:intron | 35.0% |
| AATGAGCTGCATGTCATTGA+TGG | + | chr4.1:4715938-4715957 | MS.gene06064:CDS | 40.0% | |
| ACACACACAAGACTAGCATT+AGG | - | chr4.1:4715843-4715862 | None:intergenic | 40.0% | |
| AGTTCCTACAATGTTTGTCC+AGG | + | chr4.1:4715659-4715678 | MS.gene06064:CDS | 40.0% | |
| ATCAAGGATGGTTTCATAGC+CGG | - | chr4.1:4715040-4715059 | None:intergenic | 40.0% | |
| ATGCCACACTCAAGCAATTA+TGG | + | chr4.1:4715475-4715494 | MS.gene06064:intron | 40.0% | |
| CAACCATAATTGCTTGAGTG+TGG | - | chr4.1:4715481-4715500 | None:intergenic | 40.0% | |
| CAAGCCATGAAGAAATGAAG+AGG | - | chr4.1:4715402-4715421 | None:intergenic | 40.0% | |
| CACACTCAAGCAATTATGGT+TGG | + | chr4.1:4715479-4715498 | MS.gene06064:intron | 40.0% | |
| CCATTAATTCCCTGGAACAA+TGG | - | chr4.1:4715606-4715625 | None:intergenic | 40.0% | |
| CCATTGTTCCAGGGAATTAA+TGG | + | chr4.1:4715603-4715622 | MS.gene06064:intron | 40.0% | |
| GACAACATCAGTAGCATGTA+AGG | - | chr4.1:4714026-4714045 | None:intergenic | 40.0% | |
| GACAACTTCATCAATCGAGT+TGG | - | chr4.1:4715323-4715342 | None:intergenic | 40.0% | |
| GCACTATCATTTGCACTTGT+TGG | + | chr4.1:4715421-4715440 | MS.gene06064:intron | 40.0% | |
| GGATTGGAAAGAAACTCACA+AGG | - | chr4.1:4714061-4714080 | None:intergenic | 40.0% | |
| GGTCCAACAGTTTGAAGAAA+TGG | - | chr4.1:4715019-4715038 | None:intergenic | 40.0% | |
| GTGTTGAAATCCAATGAGTG+TGG | - | chr4.1:4715170-4715189 | None:intergenic | 40.0% | |
| TCCAAAGACCCAAACTAAAG+TGG | - | chr4.1:4714973-4714992 | None:intergenic | 40.0% | |
| TCTACCTGGACAAACATTGT+AGG | - | chr4.1:4715666-4715685 | None:intergenic | 40.0% | |
| TTGTAGAGTTGGATGTATGG+TGG | + | chr4.1:4714715-4714734 | MS.gene06064:intron | 40.0% | |
| TTTGGAAATGAAAGCGGCAA+TGG | - | chr4.1:4716050-4716069 | None:intergenic | 40.0% | |
| ! | ATTTGCTAGACATGTCTGGT+GGG | + | chr4.1:4714453-4714472 | MS.gene06064:intron | 40.0% |
| ! | TTTCTGCCCCTTTTACTTTG+TGG | + | chr4.1:4714858-4714877 | MS.gene06064:intron | 40.0% |
| !! | AAGAAGCATCTGCAAGCAAA+GGG | + | chr4.1:4715986-4716005 | MS.gene06064:CDS | 40.0% |
| !! | AGAAATGGAAGTACTGAAGG+TGG | - | chr4.1:4715004-4715023 | None:intergenic | 40.0% |
| !! | TAAGAAGCATCTGCAAGCAA+AGG | + | chr4.1:4715985-4716004 | MS.gene06064:CDS | 40.0% |
| !! | TCCACTTTAGTTTGGGTCTT+TGG | + | chr4.1:4714969-4714988 | MS.gene06064:intron | 40.0% |
| ACATGTCTGGTGGGAAAAAG+AGG | + | chr4.1:4714462-4714481 | MS.gene06064:CDS | 45.0% | |
| AGCATCCAATCAGAAGAGGA+AGG | - | chr4.1:4713886-4713905 | None:intergenic | 45.0% | |
| AGGGAATTAATGGTGCGGTT+AGG | + | chr4.1:4715613-4715632 | MS.gene06064:intron | 45.0% | |
| ATCGCCGCCACAAAGTAAAA+GGG | - | chr4.1:4714868-4714887 | None:intergenic | 45.0% | |
| ATGCTTGGGCTACCCATTAA+AGG | + | chr4.1:4714772-4714791 | MS.gene06064:CDS | 45.0% | |
| CACAAATGGGGTAAGGCATA+TGG | - | chr4.1:4714929-4714948 | None:intergenic | 45.0% | |
| CATGTCTGGTGGGAAAAAGA+GGG | + | chr4.1:4714463-4714482 | MS.gene06064:CDS | 45.0% | |
| CCTCTTCTGATTGGATGCTA+AGG | + | chr4.1:4713887-4713906 | MS.gene06064:CDS | 45.0% | |
| CCTTAGCATCCAATCAGAAG+AGG | - | chr4.1:4713890-4713909 | None:intergenic | 45.0% | |
| CGCTTTCATCTTCTTTCGAG+TGG | - | chr4.1:4715915-4715934 | None:intergenic | 45.0% | |
| CTCCCCTAGAATGTGATATG+TGG | + | chr4.1:4715091-4715110 | MS.gene06064:intron | 45.0% | |
| GAAACTGCAACTAAGTTCCC+TGG | + | chr4.1:4714536-4714555 | MS.gene06064:CDS | 45.0% | |
| GGGAATTAATGGTGCGGTTA+GGG | + | chr4.1:4715614-4715633 | MS.gene06064:intron | 45.0% | |
| GTGGTCTCTAACTTCTCAAG+TGG | - | chr4.1:4715896-4715915 | None:intergenic | 45.0% | |
| GTTCCAGGGAATTAATGGTG+CGG | + | chr4.1:4715608-4715627 | MS.gene06064:intron | 45.0% | |
| GTTTCCGCTGTACTATGCTT+GGG | + | chr4.1:4714758-4714777 | MS.gene06064:CDS | 45.0% | |
| TAACCGCACCATTAATTCCC+TGG | - | chr4.1:4715614-4715633 | None:intergenic | 45.0% | |
| TATCGCCGCCACAAAGTAAA+AGG | - | chr4.1:4714869-4714888 | None:intergenic | 45.0% | |
| TCCTAAGGCAGAAAAGTTGG+TGG | + | chr4.1:4714490-4714509 | MS.gene06064:CDS | 45.0% | |
| TCCTCCTAAGGCAGAAAAGT+TGG | + | chr4.1:4714487-4714506 | MS.gene06064:CDS | 45.0% | |
| TCTTGTGTGTGTCTTGAGCA+GGG | + | chr4.1:4715851-4715870 | MS.gene06064:intron | 45.0% | |
| TGTTTCCGCTGTACTATGCT+TGG | + | chr4.1:4714757-4714776 | MS.gene06064:CDS | 45.0% | |
| TTGCTAAGCTTGTACGTGAG+AGG | - | chr4.1:4715132-4715151 | None:intergenic | 45.0% | |
| ! | ACCAACTTTTCTGCCTTAGG+AGG | - | chr4.1:4714491-4714510 | None:intergenic | 45.0% |
| ! | CATTTGCTAGACATGTCTGG+TGG | + | chr4.1:4714452-4714471 | MS.gene06064:intron | 45.0% |
| ! | TCCACCAACTTTTCTGCCTT+AGG | - | chr4.1:4714494-4714513 | None:intergenic | 45.0% |
| !! | CCTTGAACCCATTGATTTGC+CGG | - | chr4.1:4714579-4714598 | None:intergenic | 45.0% |
| !! | CGAACTTATAAGGCACCGTT+TGG | - | chr4.1:4714294-4714313 | None:intergenic | 45.0% |
| !! | TGGTGGTGACCACTCTTTTA+AGG | + | chr4.1:4715958-4715977 | MS.gene06064:CDS | 45.0% |
| !!! | ACCGGTGACAGTTGTTTTAG+CGG | - | chr4.1:4713835-4713854 | None:intergenic | 45.0% |
| !!! | GGTGACCACTCTTTTAAGGT+TGG | + | chr4.1:4715962-4715981 | MS.gene06064:CDS | 45.0% |
| AACTTCGGCTTCATCCTGAG+TGG | - | chr4.1:4716014-4716033 | None:intergenic | 50.0% | |
| GAAAAAGAGGGCTCCTCCTA+AGG | + | chr4.1:4714475-4714494 | MS.gene06064:CDS | 50.0% | |
| GAGCTGCATGTCATTGATGG+TGG | + | chr4.1:4715941-4715960 | MS.gene06064:CDS | 50.0% | |
| GCCGCTAAAACAACTGTCAC+CGG | + | chr4.1:4713831-4713850 | MS.gene06064:CDS | 50.0% | |
| GCTAAAACAACTGTCACCGG+TGG | + | chr4.1:4713834-4713853 | MS.gene06064:CDS | 50.0% | |
| GTAGCCCAAGCATAGTACAG+CGG | - | chr4.1:4714765-4714784 | None:intergenic | 50.0% | |
| GTCTTGTGTGTGTCTTGAGC+AGG | + | chr4.1:4715850-4715869 | MS.gene06064:intron | 50.0% | |
| GTGCTCCTTCCTCTTCTGAT+TGG | + | chr4.1:4713878-4713897 | MS.gene06064:CDS | 50.0% | |
| TCCAATGAGTGTGGCTCAGT+TGG | - | chr4.1:4715161-4715180 | None:intergenic | 50.0% | |
| TCGCCGCCACAAAGTAAAAG+GGG | - | chr4.1:4714867-4714886 | None:intergenic | 50.0% | |
| TGGATGTATGGTGGCTAGCA+TGG | + | chr4.1:4714724-4714743 | MS.gene06064:CDS | 50.0% | |
| ! | ATCAGAAGAGGAAGGAGCAC+CGG | - | chr4.1:4713878-4713897 | None:intergenic | 50.0% |
| ! | CCGGCAAATCAATGGGTTCA+AGG | + | chr4.1:4714576-4714595 | MS.gene06064:CDS | 50.0% |
| ! | CTGCCCCTTTTACTTTGTGG+CGG | + | chr4.1:4714861-4714880 | MS.gene06064:intron | 50.0% |
| ! | GTACTGGCCGGCAAATCAAT+GGG | + | chr4.1:4714569-4714588 | MS.gene06064:CDS | 50.0% |
| !! | AAGTACTGAAGGTGGCACTG+AGG | - | chr4.1:4714996-4715015 | None:intergenic | 50.0% |
| !! | GCGGCGTTGATGATTCAATC+TGG | - | chr4.1:4713816-4713835 | None:intergenic | 50.0% |
| AGCCGAAGTTGCTGCTGTGA+AGG | + | chr4.1:4716024-4716043 | MS.gene06064:CDS | 55.0% | |
| CCAGTACGAGAGGATGACCA+GGG | - | chr4.1:4714556-4714575 | None:intergenic | 55.0% | |
| CCGGTGGTTATCTTCGCTCA+CGG | + | chr4.1:4713850-4713869 | MS.gene06064:CDS | 55.0% | |
| CCGTGAGCGAAGATAACCAC+CGG | - | chr4.1:4713853-4713872 | None:intergenic | 55.0% | |
| GCAAGCAAAGGGTTCCACTC+AGG | + | chr4.1:4715997-4716016 | MS.gene06064:CDS | 55.0% | |
| GCCAACTGAGCCACACTCAT+TGG | + | chr4.1:4715157-4715176 | MS.gene06064:intron | 55.0% | |
| GGCCTTCACAGCAGCAACTT+CGG | - | chr4.1:4716029-4716048 | None:intergenic | 55.0% | |
| GTTATCTTCGCTCACGGTGC+CGG | + | chr4.1:4713856-4713875 | MS.gene06064:CDS | 55.0% | |
| ! | CGTACTGGCCGGCAAATCAA+TGG | + | chr4.1:4714568-4714587 | MS.gene06064:CDS | 55.0% |
| CCCTGGTCATCCTCTCGTAC+TGG | + | chr4.1:4714553-4714572 | MS.gene06064:CDS | 60.0% | |
| CTTGAGCAGGGCAGCAAGGA+TGG | + | chr4.1:4715863-4715882 | MS.gene06064:intron | 60.0% | |
| GATTTGCCGGCCAGTACGAG+AGG | - | chr4.1:4714566-4714585 | None:intergenic | 60.0% | |
| GCCAGTACGAGAGGATGACC+AGG | - | chr4.1:4714557-4714576 | None:intergenic | 60.0% | |
| GTGTCTTGAGCAGGGCAGCA+AGG | + | chr4.1:4715859-4715878 | MS.gene06064:intron | 60.0% | |
| ! | GGTCATCCTCTCGTACTGGC+CGG | + | chr4.1:4714557-4714576 | MS.gene06064:CDS | 60.0% |
| ! | TGACGACGTCGCTTTGCAGC+AGG | - | chr4.1:4713781-4713800 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4713766 | 4716084 | 4713766 | ID=MS.gene06064 |
| chr4.1 | mRNA | 4713766 | 4716084 | 4713766 | ID=MS.gene06064.t1;Parent=MS.gene06064 |
| chr4.1 | exon | 4713766 | 4713908 | 4713766 | ID=MS.gene06064.t1.exon1;Parent=MS.gene06064.t1 |
| chr4.1 | CDS | 4713766 | 4713908 | 4713766 | ID=cds.MS.gene06064.t1;Parent=MS.gene06064.t1 |
| chr4.1 | exon | 4714000 | 4714061 | 4714000 | ID=MS.gene06064.t1.exon2;Parent=MS.gene06064.t1 |
| chr4.1 | CDS | 4714000 | 4714061 | 4714000 | ID=cds.MS.gene06064.t1;Parent=MS.gene06064.t1 |
| chr4.1 | exon | 4714462 | 4714597 | 4714462 | ID=MS.gene06064.t1.exon3;Parent=MS.gene06064.t1 |
| chr4.1 | CDS | 4714462 | 4714597 | 4714462 | ID=cds.MS.gene06064.t1;Parent=MS.gene06064.t1 |
| chr4.1 | exon | 4714721 | 4714793 | 4714721 | ID=MS.gene06064.t1.exon4;Parent=MS.gene06064.t1 |
| chr4.1 | CDS | 4714721 | 4714793 | 4714721 | ID=cds.MS.gene06064.t1;Parent=MS.gene06064.t1 |
| chr4.1 | exon | 4715615 | 4715680 | 4715615 | ID=MS.gene06064.t1.exon5;Parent=MS.gene06064.t1 |
| chr4.1 | CDS | 4715615 | 4715680 | 4715615 | ID=cds.MS.gene06064.t1;Parent=MS.gene06064.t1 |
| chr4.1 | exon | 4715872 | 4716084 | 4715872 | ID=MS.gene06064.t1.exon6;Parent=MS.gene06064.t1 |
| chr4.1 | CDS | 4715872 | 4716084 | 4715872 | ID=cds.MS.gene06064.t1;Parent=MS.gene06064.t1 |
| Gene Sequence |
| Protein sequence |
