Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90660.t1 | XP_003615482.1 | 99.3 | 146 | 1 | 0 | 1 | 146 | 8 | 153 | 1.30E-74 | 288.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90660.t1 | Q6AWV1 | 59.2 | 147 | 55 | 2 | 1 | 146 | 9 | 151 | 1.1e-42 | 174.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90660.t1 | G7K656 | 99.3 | 146 | 1 | 0 | 1 | 146 | 8 | 153 | 9.6e-75 | 288.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene90660 | 0.809627 | 1.72E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene90660 | 0.80284 | 4.64E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene90660 | 0.80545 | 1.33E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene90660 | 0.804925 | 1.71E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene90660 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene05134 | MS.gene90660 | 0.818445 | 1.95E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene90660 | 0.806048 | 9.94E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene90660 | 0.810839 | 9.44E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene90660 | 0.836744 | 7.82E-57 | -1.69E-46 |
| MS.gene056760 | MS.gene90660 | 0.803094 | 4.11E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene90660 | 0.810496 | 1.12E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene90660 | 0.800344 | 1.51E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene90660 | 0.808671 | 2.76E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene90660 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene90660 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene90660 | 0.80835 | 3.23E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene90660 | 0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene90660 | 0.80014 | 1.66E-48 | -1.69E-46 |
| MS.gene059830 | MS.gene90660 | 0.821036 | 5.00E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene90660 | 0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene90660 | 0.806949 | 6.41E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene90660 | 0.811483 | 6.84E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90660.t1 | MTR_5g068650 | 99.315 | 146 | 1 | 0 | 1 | 146 | 8 | 153 | 2.32e-107 | 302 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90660.t1 | AT1G04635 | 59.184 | 147 | 55 | 2 | 1 | 146 | 9 | 151 | 1.76e-60 | 184 |
Find 27 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGCATCTTGGTGAATTT+TGG | 0.109041 | 5.2:-58237632 | MS.gene90660:CDS |
| TGCATCACTGGGATCATTTC+AGG | 0.134096 | 5.2:-58237594 | MS.gene90660:CDS |
| GTGTGGTTTGGCTGCATCAC+TGG | 0.252366 | 5.2:-58237606 | MS.gene90660:CDS |
| TTTAATTTGCTTGATTTATC+TGG | 0.270551 | 5.2:-58237329 | MS.gene90660:intron |
| CTTTGGTTCAGGAAATTTAC+AGG | 0.272476 | 5.2:-58235329 | MS.gene90660:intron |
| ATTTGAGCAGTTCAAACTTA+TGG | 0.275431 | 5.2:-58235269 | MS.gene90660:CDS |
| TCTTGCTAAGATCGAAGTTT+TGG | 0.279590 | 5.2:-58235200 | MS.gene90660:CDS |
| TCACTAATGTGTGCATCATT+AGG | 0.290850 | 5.2:-58237427 | MS.gene90660:CDS |
| CCCGCCGCTTGGTCCTTGTT+AGG | 0.311025 | 5.2:+58237701 | None:intergenic |
| TCAAGCAAATTAAACACAAC+TGG | 0.340230 | 5.2:+58237338 | None:intergenic |
| CACTAATGTGTGCATCATTA+GGG | 0.362836 | 5.2:-58237426 | MS.gene90660:CDS |
| ATCACAATGGTCAGAAGTAT+TGG | 0.427749 | 5.2:-58237368 | MS.gene90660:CDS |
| ATGATGCACACATTAGTGAT+TGG | 0.442861 | 5.2:+58237431 | None:intergenic |
| TGTGGTTTGGCTGCATCACT+GGG | 0.515656 | 5.2:-58237605 | MS.gene90660:CDS |
| TTCTATAAAAGATAGCATCT+TGG | 0.526928 | 5.2:-58237642 | MS.gene90660:CDS |
| GAGCAGTTCAAACTTATGGT+TGG | 0.536131 | 5.2:-58235265 | MS.gene90660:CDS |
| TAATAGAATCACCCGCCGCT+TGG | 0.540293 | 5.2:+58237690 | None:intergenic |
| GCATCACTGGGATCATTTCA+GGG | 0.547289 | 5.2:-58237593 | MS.gene90660:intron |
| AATACTTCTGACCATTGTGA+TGG | 0.548904 | 5.2:+58237370 | None:intergenic |
| CCTAACAAGGACCAAGCGGC+GGG | 0.555344 | 5.2:-58237701 | MS.gene90660:CDS |
| GACTGCTGCATTAAAGTGTG+AGG | 0.576828 | 5.2:-58235299 | MS.gene90660:CDS |
| CAAGCAAATTAAACACAACT+GGG | 0.605699 | 5.2:+58237339 | None:intergenic |
| TCCTAACAAGGACCAAGCGG+CGG | 0.612927 | 5.2:-58237702 | MS.gene90660:CDS |
| AAACAGATACATGGTGATGG+AGG | 0.614082 | 5.2:-58237735 | None:intergenic |
| TGGTGATCGATTATCAGCTG+AGG | 0.675265 | 5.2:-58235245 | MS.gene90660:CDS |
| GAATCCTAACAAGGACCAAG+CGG | 0.677581 | 5.2:-58237705 | MS.gene90660:CDS |
| AGTATGGGCTTCCATCACAA+TGG | 0.688002 | 5.2:-58237381 | MS.gene90660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTATAATGTTTATT+TGG | + | chr5.2:58235964-58235983 | None:intergenic | 10.0% |
| !! | AAAAGTCTATATGTATAAAT+AGG | + | chr5.2:58236510-58236529 | None:intergenic | 15.0% |
| !! | TATTAATTGAAAAGTAAGAA+AGG | + | chr5.2:58237357-58237376 | None:intergenic | 15.0% |
| !! | TTATACAAAATATGAAATGA+AGG | - | chr5.2:58235972-58235991 | MS.gene90660:intron | 15.0% |
| !!! | GAAATAATTTAAAATCAGAT+AGG | + | chr5.2:58236911-58236930 | None:intergenic | 15.0% |
| !! | AAAAGAAAATTGAGAAATTC+TGG | - | chr5.2:58235728-58235747 | MS.gene90660:intron | 20.0% |
| !! | AAAATTAAAAATTCTCCTCA+TGG | - | chr5.2:58236662-58236681 | MS.gene90660:intron | 20.0% |
| !! | AAATTGATAAAACAGAGAAA+AGG | + | chr5.2:58237478-58237497 | None:intergenic | 20.0% |
| !! | ATATTGGAATAACAGAAAAA+AGG | - | chr5.2:58235680-58235699 | MS.gene90660:intron | 20.0% |
| !! | TATTGGAATAACAGAAAAAA+GGG | - | chr5.2:58235681-58235700 | MS.gene90660:intron | 20.0% |
| !! | TATTTCTTATACCAAAAGAA+AGG | + | chr5.2:58236310-58236329 | None:intergenic | 20.0% |
| !! | TTATTCCAATATTGTCATAA+AGG | + | chr5.2:58235672-58235691 | None:intergenic | 20.0% |
| !!! | AAGTTGGTTGAAATAAAATT+TGG | + | chr5.2:58236713-58236732 | None:intergenic | 20.0% |
| !!! | ATATTGGTTATGAAATATGA+AGG | + | chr5.2:58236254-58236273 | None:intergenic | 20.0% |
| !!! | CCAAAAATAATCTTGTTTTT+GGG | + | chr5.2:58236966-58236985 | None:intergenic | 20.0% |
| !!! | TTGATAATTTTCTCACTTTT+GGG | - | chr5.2:58235436-58235455 | MS.gene90660:intron | 20.0% |
| !!! | TTTAATTTGCTTGATTTATC+TGG | - | chr5.2:58235588-58235607 | MS.gene90660:intron | 20.0% |
| !!! | TTTGATAATTTTCTCACTTT+TGG | - | chr5.2:58235435-58235454 | MS.gene90660:intron | 20.0% |
| ! | AAAAAAGTCCTGTTATATAG+AGG | - | chr5.2:58236147-58236166 | MS.gene90660:intron | 25.0% |
| ! | AAAGGAATTCACAACAAAAA+AGG | + | chr5.2:58235654-58235673 | None:intergenic | 25.0% |
| ! | ATTAAAGAAAAGTCTATCTC+AGG | + | chr5.2:58236046-58236065 | None:intergenic | 25.0% |
| ! | ATTGGAATAACAGAAAAAAG+GGG | - | chr5.2:58235682-58235701 | MS.gene90660:intron | 25.0% |
| ! | GAATTCCTTTATGACAATAT+TGG | - | chr5.2:58235664-58235683 | MS.gene90660:intron | 25.0% |
| ! | GTAATATGCAAAACATGATA+AGG | + | chr5.2:58237407-58237426 | None:intergenic | 25.0% |
| ! | TAAGAAATAATTCCCAAAAC+CGG | - | chr5.2:58236321-58236340 | MS.gene90660:intron | 25.0% |
| ! | TATTTCTCTATAGTCTATCT+CGG | + | chr5.2:58236074-58236093 | None:intergenic | 25.0% |
| ! | TGAGAAAATTACTAAACAGA+AGG | + | chr5.2:58235394-58235413 | None:intergenic | 25.0% |
| ! | TGAGAAATGATAAAGAGAAT+AGG | - | chr5.2:58236383-58236402 | MS.gene90660:intron | 25.0% |
| ! | TTAAAGAAAAGTCTATCTCA+GGG | + | chr5.2:58236045-58236064 | None:intergenic | 25.0% |
| ! | TTCTATAAAAGATAGCATCT+TGG | - | chr5.2:58235275-58235294 | MS.gene90660:CDS | 25.0% |
| ! | TTCTATTACCTCTATATAAC+AGG | + | chr5.2:58236158-58236177 | None:intergenic | 25.0% |
| !! | AGAAGAGTATGAAAAAGTAT+GGG | - | chr5.2:58235521-58235540 | MS.gene90660:intron | 25.0% |
| !! | ATACTGGTTATGAAATATGA+AGG | + | chr5.2:58235897-58235916 | None:intergenic | 25.0% |
| !! | ATGATCAACACTATGTTTTT+AGG | - | chr5.2:58237158-58237177 | MS.gene90660:intron | 25.0% |
| !! | CCCAAAAACAAGATTATTTT+TGG | - | chr5.2:58236963-58236982 | MS.gene90660:intron | 25.0% |
| !! | GATGCTATCTTTTATAGAAT+TGG | + | chr5.2:58235274-58235293 | None:intergenic | 25.0% |
| !! | TGAGATAGACTTTTCTTTAA+TGG | - | chr5.2:58236045-58236064 | MS.gene90660:intron | 25.0% |
| !! | TGTGTTAGATACTATTTTCA+TGG | - | chr5.2:58235705-58235724 | MS.gene90660:intron | 25.0% |
| !!! | AATAATCTTGTTTTTGGGAA+AGG | + | chr5.2:58236961-58236980 | None:intergenic | 25.0% |
| !!! | GCCAAAAATAATCTTGTTTT+TGG | + | chr5.2:58236967-58236986 | None:intergenic | 25.0% |
| !!! | TGAAATTTTTGGCAGAAAAT+TGG | - | chr5.2:58237265-58237284 | MS.gene90660:intron | 25.0% |
| !!! | TTTTGAGAAATCTATATACC+AGG | + | chr5.2:58236130-58236149 | None:intergenic | 25.0% |
| !!! | TTTTTAGGTTACAACAATTC+AGG | - | chr5.2:58237173-58237192 | MS.gene90660:intron | 25.0% |
| AAAAGATGGTATCATGCATA+TGG | + | chr5.2:58237515-58237534 | None:intergenic | 30.0% | |
| AAGAAATAATTCCCAAAACC+GGG | - | chr5.2:58236322-58236341 | MS.gene90660:intron | 30.0% | |
| ACTAATAGATGACATGACTT+TGG | - | chr5.2:58237216-58237235 | MS.gene90660:intron | 30.0% | |
| AGTAATAGATTTCAACCTTG+AGG | + | chr5.2:58236611-58236630 | None:intergenic | 30.0% | |
| ATAGCGTGAGTAATAGTAAA+TGG | - | chr5.2:58236014-58236033 | MS.gene90660:intron | 30.0% | |
| ATTTCTCTATAGTCTATCTC+GGG | + | chr5.2:58236073-58236092 | None:intergenic | 30.0% | |
| ATTTGAGCAGTTCAAACTTA+TGG | - | chr5.2:58237648-58237667 | MS.gene90660:CDS | 30.0% | |
| CAAAAAAGGAAGGAGAAAAA+AGG | + | chr5.2:58235640-58235659 | None:intergenic | 30.0% | |
| CAAGCAAATTAAACACAACT+GGG | + | chr5.2:58235581-58235600 | None:intergenic | 30.0% | |
| CATAGTAGTTTGATATGGTT+TGG | - | chr5.2:58237290-58237309 | MS.gene90660:intron | 30.0% | |
| CTAAACAGAAGGAAAACAAT+AGG | + | chr5.2:58235383-58235402 | None:intergenic | 30.0% | |
| CTGATATGAAATTGTACCTT+TGG | - | chr5.2:58237571-58237590 | MS.gene90660:intron | 30.0% | |
| GAATTCACAACAAAAAAGGA+AGG | + | chr5.2:58235650-58235669 | None:intergenic | 30.0% | |
| TAAGAGTTGTTAGTTAGTTG+AGG | + | chr5.2:58236538-58236557 | None:intergenic | 30.0% | |
| TAGCGTGAGTAATAGTAAAT+GGG | - | chr5.2:58236015-58236034 | MS.gene90660:intron | 30.0% | |
| TATCAATTTGATCTTGCCAT+TGG | - | chr5.2:58237489-58237508 | MS.gene90660:intron | 30.0% | |
| TCAAGCAAATTAAACACAAC+TGG | + | chr5.2:58235582-58235601 | None:intergenic | 30.0% | |
| TCATCTTGGGTTATCATTAA+CGG | - | chr5.2:58235926-58235945 | MS.gene90660:intron | 30.0% | |
| TCGTTTCTCTGTAATAATGA+TGG | - | chr5.2:58237116-58237135 | MS.gene90660:intron | 30.0% | |
| TGGTTCATAGTAGTTTGATA+TGG | - | chr5.2:58237285-58237304 | MS.gene90660:intron | 30.0% | |
| TTAATGATAACCCAAGATGA+GGG | + | chr5.2:58235926-58235945 | None:intergenic | 30.0% | |
| TTTACTATTACTCACGCTAT+CGG | + | chr5.2:58236014-58236033 | None:intergenic | 30.0% | |
| ! | ATAGCATCTTGGTGAATTTT+GGG | - | chr5.2:58235286-58235305 | MS.gene90660:CDS | 30.0% |
| ! | CAAAGGTACAATTTCATATC+AGG | + | chr5.2:58237573-58237592 | None:intergenic | 30.0% |
| ! | GAGAAGAGTATGAAAAAGTA+TGG | - | chr5.2:58235520-58235539 | MS.gene90660:intron | 30.0% |
| ! | GGTTTTTATGAATCCTAACA+AGG | - | chr5.2:58235203-58235222 | MS.gene90660:CDS | 30.0% |
| ! | TTCTGTTTCTTCTACATAAC+AGG | + | chr5.2:58235795-58235814 | None:intergenic | 30.0% |
| !! | TAATTTTCTCACTTTTGGGT+CGG | - | chr5.2:58235440-58235459 | MS.gene90660:intron | 30.0% |
| !! | TAGTTTGATATGGTTTGGTA+GGG | - | chr5.2:58237295-58237314 | MS.gene90660:intron | 30.0% |
| !! | TTGATCATTCTTTTTAGCGA+TGG | + | chr5.2:58237146-58237165 | None:intergenic | 30.0% |
| AATACTTCTGACCATTGTGA+TGG | + | chr5.2:58235550-58235569 | None:intergenic | 35.0% | |
| AGATTTCAACCTTGAGGATA+AGG | + | chr5.2:58236605-58236624 | None:intergenic | 35.0% | |
| AGTAGTGACTCTATTGTGAA+GGG | + | chr5.2:58236434-58236453 | None:intergenic | 35.0% | |
| ATGATGCACACATTAGTGAT+TGG | + | chr5.2:58235489-58235508 | None:intergenic | 35.0% | |
| CACTAATGTGTGCATCATTA+GGG | - | chr5.2:58235491-58235510 | MS.gene90660:intron | 35.0% | |
| CCAACAATAATCCACAATGA+GGG | + | chr5.2:58236282-58236301 | None:intergenic | 35.0% | |
| CTGTAAATTTCCTGAACCAA+AGG | + | chr5.2:58237590-58237609 | None:intergenic | 35.0% | |
| GAATGATAGATTCAAGTGAC+AGG | + | chr5.2:58236214-58236233 | None:intergenic | 35.0% | |
| GCAACAATGCTGAAAAAACA+AGG | + | chr5.2:58236883-58236902 | None:intergenic | 35.0% | |
| GGCAAAGAGAACATTTATGA+AGG | + | chr5.2:58236995-58237014 | None:intergenic | 35.0% | |
| GTTAATGATAACCCAAGATG+AGG | + | chr5.2:58235927-58235946 | None:intergenic | 35.0% | |
| TAAGAGCAAATACTGCATGT+TGG | - | chr5.2:58235611-58235630 | MS.gene90660:intron | 35.0% | |
| TAATGATAACCCAAGATGAG+GGG | + | chr5.2:58235925-58235944 | None:intergenic | 35.0% | |
| TACTGTCTTCTTGTTCCATT+GGG | - | chr5.2:58236627-58236646 | MS.gene90660:intron | 35.0% | |
| TAGATCAGGATAACAAGCAT+CGG | + | chr5.2:58235841-58235860 | None:intergenic | 35.0% | |
| TATGAAGGCTTTCAATTGTG+TGG | + | chr5.2:58236239-58236258 | None:intergenic | 35.0% | |
| TCACTAATGTGTGCATCATT+AGG | - | chr5.2:58235490-58235509 | MS.gene90660:intron | 35.0% | |
| TCAGAGTTTCATTCAGATGA+TGG | + | chr5.2:58237455-58237474 | None:intergenic | 35.0% | |
| TCTCTGAGTGAAAGAAAAGA+TGG | + | chr5.2:58237529-58237548 | None:intergenic | 35.0% | |
| TCTCTGTAATCATAAAGTCC+TGG | - | chr5.2:58236109-58236128 | MS.gene90660:intron | 35.0% | |
| TGAGGTATACTGCTATTGAA+AGG | - | chr5.2:58236359-58236378 | MS.gene90660:intron | 35.0% | |
| TTACTGTCTTCTTGTTCCAT+TGG | - | chr5.2:58236626-58236645 | MS.gene90660:intron | 35.0% | |
| TTGCAAATGAGTGATAGATC+AGG | + | chr5.2:58235855-58235874 | None:intergenic | 35.0% | |
| TTTCTCTATAGTCTATCTCG+GGG | + | chr5.2:58236072-58236091 | None:intergenic | 35.0% | |
| ! | ATCACAATGGTCAGAAGTAT+TGG | - | chr5.2:58235549-58235568 | MS.gene90660:intron | 35.0% |
| ! | CCTCATTGTGGATTATTGTT+GGG | - | chr5.2:58236280-58236299 | MS.gene90660:intron | 35.0% |
| ! | CTTTGGTTCAGGAAATTTAC+AGG | - | chr5.2:58237588-58237607 | MS.gene90660:intron | 35.0% |
| ! | GATAGCATCTTGGTGAATTT+TGG | - | chr5.2:58235285-58235304 | MS.gene90660:CDS | 35.0% |
| ! | TAGCATCTTGGTGAATTTTG+GGG | - | chr5.2:58235287-58235306 | MS.gene90660:CDS | 35.0% |
| ! | TCTTGCTAAGATCGAAGTTT+TGG | - | chr5.2:58237717-58237736 | MS.gene90660:CDS | 35.0% |
| ! | TGAAATTGTACCTTTGGTTC+AGG | - | chr5.2:58237577-58237596 | MS.gene90660:intron | 35.0% |
| !! | GTAGTTTGATATGGTTTGGT+AGG | - | chr5.2:58237294-58237313 | MS.gene90660:intron | 35.0% |
| !! | TTGAGGATAAGGTTGTTTTG+CGG | + | chr5.2:58236594-58236613 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGGAAAGGAAGTT+AGG | + | chr5.2:58236953-58236972 | None:intergenic | 35.0% |
| !!! | TTTTTTTTCTCTGCACCCAA+TGG | + | chr5.2:58236645-58236664 | None:intergenic | 35.0% |
| AATTTCATCCCCCTCTTCAT+AGG | + | chr5.2:58237252-58237271 | None:intergenic | 40.0% | |
| ACAAAGCTTCCTATGAAGAG+GGG | - | chr5.2:58237240-58237259 | MS.gene90660:intron | 40.0% | |
| ACAACCTTCTCCAAAGATCT+TGG | + | chr5.2:58237024-58237043 | None:intergenic | 40.0% | |
| ACCTTGTTGGAACTGCAAAA+TGG | + | chr5.2:58237059-58237078 | None:intergenic | 40.0% | |
| ACTGCAAAATGGCAAGTTAG+AGG | + | chr5.2:58237048-58237067 | None:intergenic | 40.0% | |
| AGTGACAGGATGATAAGCAT+TGG | + | chr5.2:58236200-58236219 | None:intergenic | 40.0% | |
| CAATATTCGTTCCCTCATTG+TGG | - | chr5.2:58236268-58236287 | MS.gene90660:intron | 40.0% | |
| CACAAAGCTTCCTATGAAGA+GGG | - | chr5.2:58237239-58237258 | MS.gene90660:intron | 40.0% | |
| CACAATGAGGGAACGAATAT+TGG | + | chr5.2:58236270-58236289 | None:intergenic | 40.0% | |
| CAGTGCATAATTGCAGAAGT+TGG | + | chr5.2:58236848-58236867 | None:intergenic | 40.0% | |
| CATGATAAGGTGATGCATCA+AGG | + | chr5.2:58237394-58237413 | None:intergenic | 40.0% | |
| CCCAACAATAATCCACAATG+AGG | + | chr5.2:58236283-58236302 | None:intergenic | 40.0% | |
| CTCATTCTATCAATTCTGCC+CGG | + | chr5.2:58236343-58236362 | None:intergenic | 40.0% | |
| GAAATGAAGGTCAACACATC+AGG | - | chr5.2:58235985-58236004 | MS.gene90660:intron | 40.0% | |
| GAGCAGTTCAAACTTATGGT+TGG | - | chr5.2:58237652-58237671 | MS.gene90660:CDS | 40.0% | |
| GAGTAGTGACTCTATTGTGA+AGG | + | chr5.2:58236435-58236454 | None:intergenic | 40.0% | |
| GCAAAACAACCTTATCCTCA+AGG | - | chr5.2:58236593-58236612 | MS.gene90660:intron | 40.0% | |
| TATTGTGAAGGGAAAACCCT+TGG | + | chr5.2:58236423-58236442 | None:intergenic | 40.0% | |
| ! | CCCTCATTGTGGATTATTGT+TGG | - | chr5.2:58236279-58236298 | MS.gene90660:intron | 40.0% |
| ! | GAAGAGGGGGATGAAATTTT+TGG | - | chr5.2:58237254-58237273 | MS.gene90660:intron | 40.0% |
| ! | TATCAATTCTGCCCGGTTTT+GGG | + | chr5.2:58236336-58236355 | None:intergenic | 40.0% |
| ! | TGTTGGGAACACCTTTCTTT+TGG | - | chr5.2:58236296-58236315 | MS.gene90660:intron | 40.0% |
| !! | AGGTGATGGGTCTAATTCAA+TGG | + | chr5.2:58236933-58236952 | None:intergenic | 40.0% |
| AAGATGAGGGGACAACATAC+TGG | + | chr5.2:58235913-58235932 | None:intergenic | 45.0% | |
| AGGAGATAATCTCTCCTCCA+AGG | - | chr5.2:58236403-58236422 | MS.gene90660:intron | 45.0% | |
| AGTATGGGCTTCCATCACAA+TGG | - | chr5.2:58235536-58235555 | MS.gene90660:intron | 45.0% | |
| AGTATGTTGTCCCCTCATCT+TGG | - | chr5.2:58235912-58235931 | MS.gene90660:intron | 45.0% | |
| CAAAGCTTCCTATGAAGAGG+GGG | - | chr5.2:58237241-58237260 | MS.gene90660:intron | 45.0% | |
| CCTTCATTAGCAACAGCAGT+GGG | + | chr5.2:58236776-58236795 | None:intergenic | 45.0% | |
| CGGGCAGAATTGATAGAATG+AGG | - | chr5.2:58236341-58236360 | MS.gene90660:intron | 45.0% | |
| GAATCCTAACAAGGACCAAG+CGG | - | chr5.2:58235212-58235231 | MS.gene90660:CDS | 45.0% | |
| GACTGCTGCATTAAAGTGTG+AGG | - | chr5.2:58237618-58237637 | MS.gene90660:CDS | 45.0% | |
| GCACAAAGCTTCCTATGAAG+AGG | - | chr5.2:58237238-58237257 | MS.gene90660:intron | 45.0% | |
| GCATCACTGGGATCATTTCA+GGG | - | chr5.2:58235324-58235343 | MS.gene90660:intron | 45.0% | |
| GGAGATAATCTCTCCTCCAA+GGG | - | chr5.2:58236404-58236423 | MS.gene90660:intron | 45.0% | |
| GGGAAAGGAAGTTAGGTGAT+GGG | + | chr5.2:58236946-58236965 | None:intergenic | 45.0% | |
| GGTATCATGCATATGGCCAA+TGG | + | chr5.2:58237508-58237527 | None:intergenic | 45.0% | |
| GTATGTTGTCCCCTCATCTT+GGG | - | chr5.2:58235913-58235932 | MS.gene90660:intron | 45.0% | |
| TCCTTCATTAGCAACAGCAG+TGG | + | chr5.2:58236777-58236796 | None:intergenic | 45.0% | |
| TCTTGATCTGCTCCATGTCA+GGG | - | chr5.2:58237078-58237097 | MS.gene90660:intron | 45.0% | |
| TGCATCACTGGGATCATTTC+AGG | - | chr5.2:58235323-58235342 | MS.gene90660:intron | 45.0% | |
| TGGGAAAGGAAGTTAGGTGA+TGG | + | chr5.2:58236947-58236966 | None:intergenic | 45.0% | |
| TGGTGATCGATTATCAGCTG+AGG | - | chr5.2:58237672-58237691 | MS.gene90660:CDS | 45.0% | |
| ! | CTATCAATTCTGCCCGGTTT+TGG | + | chr5.2:58236337-58236356 | None:intergenic | 45.0% |
| ! | TGTGCCAAGATCTTTGGAGA+AGG | - | chr5.2:58237017-58237036 | MS.gene90660:intron | 45.0% |
| !! | GAATTTTGGGGAGTGTGGTT+TGG | - | chr5.2:58235299-58235318 | MS.gene90660:CDS | 45.0% |
| !! | GCCATTTTGCAGTTCCAACA+AGG | - | chr5.2:58237055-58237074 | MS.gene90660:intron | 45.0% |
| !! | TTGGTGAATTTTGGGGAGTG+TGG | - | chr5.2:58235294-58235313 | MS.gene90660:CDS | 45.0% |
| AACTTTCCCATGTGGCGCTT+GGG | + | chr5.2:58236808-58236827 | None:intergenic | 50.0% | |
| AATCATTCCCAAGCGCCACA+TGG | - | chr5.2:58236798-58236817 | MS.gene90660:intron | 50.0% | |
| ATCATTCCCAAGCGCCACAT+GGG | - | chr5.2:58236799-58236818 | MS.gene90660:intron | 50.0% | |
| CCCACTGCTGTTGCTAATGA+AGG | - | chr5.2:58236773-58236792 | MS.gene90660:intron | 50.0% | |
| CTCCAAAGATCTTGGCACAG+CGG | + | chr5.2:58237016-58237035 | None:intergenic | 50.0% | |
| GGAGCAGATCAAGACCTTGT+TGG | + | chr5.2:58237072-58237091 | None:intergenic | 50.0% | |
| GTCTTGATCTGCTCCATGTC+AGG | - | chr5.2:58237077-58237096 | MS.gene90660:intron | 50.0% | |
| TAATAGAATCACCCGCCGCT+TGG | + | chr5.2:58235230-58235249 | None:intergenic | 50.0% | |
| TCCAGCTGAACTTTCCCATG+TGG | + | chr5.2:58236816-58236835 | None:intergenic | 50.0% | |
| TGTGAAGGGAAAACCCTTGG+AGG | + | chr5.2:58236420-58236439 | None:intergenic | 50.0% | |
| TTCGTCAAGCTCTCAGCAGT+CGG | + | chr5.2:58236690-58236709 | None:intergenic | 50.0% | |
| ! | TGTGGTTTGGCTGCATCACT+GGG | - | chr5.2:58235312-58235331 | MS.gene90660:CDS | 50.0% |
| !! | GTTGTTTTGCGGACGAGTGA+CGG | + | chr5.2:58236583-58236602 | None:intergenic | 50.0% |
| CGGACGAGTGACGGTGTAAT+GGG | + | chr5.2:58236574-58236593 | None:intergenic | 55.0% | |
| GAACTTTCCCATGTGGCGCT+TGG | + | chr5.2:58236809-58236828 | None:intergenic | 55.0% | |
| GCCACATGGGAAAGTTCAGC+TGG | - | chr5.2:58236812-58236831 | MS.gene90660:intron | 55.0% | |
| TCCTAACAAGGACCAAGCGG+CGG | - | chr5.2:58235215-58235234 | MS.gene90660:CDS | 55.0% | |
| TGCCGCTGTGCCAAGATCTT+TGG | - | chr5.2:58237011-58237030 | MS.gene90660:intron | 55.0% | |
| ! | GCAAGTGCTGCAGCAAACTG+CGG | + | chr5.2:58236750-58236769 | None:intergenic | 55.0% |
| ! | GGACGACTGGGATCTGAAGT+TGG | + | chr5.2:58236729-58236748 | None:intergenic | 55.0% |
| ! | GTGTGGTTTGGCTGCATCAC+TGG | - | chr5.2:58235311-58235330 | MS.gene90660:CDS | 55.0% |
| CCATGTCAGGGACTCTGCTG+AGG | - | chr5.2:58237090-58237109 | MS.gene90660:intron | 60.0% | |
| CCTAACAAGGACCAAGCGGC+GGG | - | chr5.2:58235216-58235235 | MS.gene90660:CDS | 60.0% | |
| CCTCAGCAGAGTCCCTGACA+TGG | + | chr5.2:58237093-58237112 | None:intergenic | 60.0% | |
| GCAGCAAACTGCGGACGACT+GGG | + | chr5.2:58236741-58236760 | None:intergenic | 60.0% | |
| GCGGACGAGTGACGGTGTAA+TGG | + | chr5.2:58236575-58236594 | None:intergenic | 60.0% | |
| TGCAGCAAACTGCGGACGAC+TGG | + | chr5.2:58236742-58236761 | None:intergenic | 60.0% | |
| ! | TCTCAGCAGTCGGCTCCATG+AGG | + | chr5.2:58236680-58236699 | None:intergenic | 60.0% |
| CCCGCCGCTTGGTCCTTGTT+AGG | + | chr5.2:58235219-58235238 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 58235192 | 58237747 | 58235192 | ID=MS.gene90660 |
| chr5.2 | mRNA | 58235192 | 58237747 | 58235192 | ID=MS.gene90660.t1;Parent=MS.gene90660 |
| chr5.2 | exon | 58237594 | 58237747 | 58237594 | ID=MS.gene90660.t1.exon1;Parent=MS.gene90660.t1 |
| chr5.2 | CDS | 58237594 | 58237747 | 58237594 | ID=cds.MS.gene90660.t1;Parent=MS.gene90660.t1 |
| chr5.2 | exon | 58237330 | 58237467 | 58237330 | ID=MS.gene90660.t1.exon2;Parent=MS.gene90660.t1 |
| chr5.2 | CDS | 58237330 | 58237467 | 58237330 | ID=cds.MS.gene90660.t1;Parent=MS.gene90660.t1 |
| chr5.2 | exon | 58235192 | 58235340 | 58235192 | ID=MS.gene90660.t1.exon3;Parent=MS.gene90660.t1 |
| chr5.2 | CDS | 58235192 | 58235340 | 58235192 | ID=cds.MS.gene90660.t1;Parent=MS.gene90660.t1 |
| Gene Sequence |
| Protein sequence |
