AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91400.t1 MTR_1g105495 99.000 300 3 0 1 300 1 300 0.0 624
MS.gene91400.t1 MTR_4g097700 51.439 278 131 2 17 294 51 324 3.80e-101 300
MS.gene91400.t1 MTR_4g097640 53.435 262 118 2 33 294 30 287 1.87e-99 294
MS.gene91400.t1 MTR_4g097670 53.435 262 118 2 33 294 30 287 1.87e-99 294
MS.gene91400.t1 MTR_1g105900 46.367 289 149 3 11 296 8 293 2.58e-97 288
MS.gene91400.t1 MTR_7g084770 49.481 289 141 3 7 294 3 287 2.42e-94 281
MS.gene91400.t1 MTR_7g084760 48.966 290 143 3 7 295 3 288 3.68e-93 278
MS.gene91400.t1 MTR_6g033055 47.751 289 147 2 7 295 4 288 6.28e-93 277
MS.gene91400.t1 MTR_6g033085 48.592 284 142 2 12 295 9 288 7.81e-93 277
MS.gene91400.t1 MTR_7g084750 48.227 282 142 2 13 294 10 287 1.08e-92 276
MS.gene91400.t1 MTR_2g089140 49.265 272 126 4 30 294 20 286 2.26e-91 273
MS.gene91400.t1 MTR_4g045853 48.339 271 128 4 31 294 23 288 5.30e-88 265
MS.gene91400.t1 MTR_4g128410 48.727 275 133 4 25 297 15 283 1.17e-86 261
MS.gene91400.t1 MTR_7g093530 47.079 291 141 5 8 296 2 281 3.36e-86 260
MS.gene91400.t1 MTR_4g128570 46.758 293 131 6 6 297 7 275 5.99e-84 254
MS.gene91400.t1 MTR_8g081040 44.792 288 143 6 9 295 10 282 1.04e-83 253
MS.gene91400.t1 MTR_3g084620 43.929 280 145 3 16 294 9 277 1.44e-82 251
MS.gene91400.t1 MTR_3g084630 44.245 278 143 3 18 294 11 277 2.02e-82 250
MS.gene91400.t1 MTR_8g479340 64.179 201 12 2 100 300 1 141 5.68e-82 244
MS.gene91400.t1 MTR_4g128580 46.931 277 133 5 28 297 19 288 1.17e-80 246
MS.gene91400.t1 MTR_4g126920 45.055 273 139 4 29 297 19 284 1.63e-80 245
MS.gene91400.t1 MTR_2g089140 52.000 225 98 3 77 294 2 223 7.96e-80 241
MS.gene91400.t1 MTR_8g013055 46.360 261 133 4 35 294 31 285 1.41e-79 243
MS.gene91400.t1 MTR_2g038860 43.986 291 149 4 11 297 9 289 1.48e-79 243
MS.gene91400.t1 MTR_2g038705 43.986 291 149 4 11 297 9 289 1.48e-79 243
MS.gene91400.t1 MTR_6g088320 41.958 286 152 5 12 294 9 283 1.75e-78 240
MS.gene91400.t1 MTR_8g102220 43.060 281 136 5 18 297 12 269 2.41e-77 237
MS.gene91400.t1 MTR_4g128400 42.807 285 151 4 14 294 7 283 8.53e-77 236
MS.gene91400.t1 MTR_8g102910 42.642 265 144 4 33 294 20 279 5.44e-76 234
MS.gene91400.t1 MTR_4g128590 41.638 293 146 5 9 297 7 278 8.43e-74 228
MS.gene91400.t1 MTR_7g056090 40.956 293 161 7 4 296 3 283 1.49e-71 223
MS.gene91400.t1 MTR_5g091730 41.065 263 144 4 33 294 26 278 4.74e-68 214
MS.gene91400.t1 MTR_3g089540 42.803 264 140 5 33 294 28 282 1.89e-65 207
MS.gene91400.t1 MTR_2g049130 36.861 274 164 7 9 281 3 268 3.97e-61 196
MS.gene91400.t1 MTR_2g049030 35.473 296 172 9 5 298 2 280 4.79e-59 190
MS.gene91400.t1 MTR_5g029100 38.686 274 156 6 35 300 42 311 1.80e-58 191
MS.gene91400.t1 MTR_8g064180 36.940 268 160 5 34 294 45 310 2.25e-58 189
MS.gene91400.t1 MTR_4g057450 37.956 274 153 8 27 294 42 304 3.38e-58 189
MS.gene91400.t1 MTR_2g095800 38.043 276 151 8 27 294 46 309 3.09e-56 184
MS.gene91400.t1 MTR_1g063020 34.768 302 165 9 9 294 9 294 7.89e-55 180
MS.gene91400.t1 MTR_8g090100 35.316 269 169 4 35 300 21 287 2.21e-54 179
MS.gene91400.t1 MTR_7g102260 37.037 270 147 7 35 295 37 292 1.52e-53 176
MS.gene91400.t1 MTR_1g033420 36.704 267 158 6 35 296 33 293 1.61e-53 177
MS.gene91400.t1 MTR_5g029100 39.419 241 134 6 68 300 44 280 1.77e-52 174
MS.gene91400.t1 MTR_8g032640 34.682 173 106 4 59 231 35 200 6.33e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91400.t1 AT1G11545 82.492 297 46 4 6 299 11 304 0.0 516
MS.gene91400.t1 AT5G13870 50.859 291 138 3 4 294 2 287 8.70e-98 290
MS.gene91400.t1 AT5G13870 50.859 291 138 3 4 294 2 287 8.70e-98 290
MS.gene91400.t1 AT5G13870 50.859 291 138 3 4 294 2 287 8.70e-98 290
MS.gene91400.t1 AT5G65730 47.279 294 151 2 1 294 1 290 1.02e-96 287
MS.gene91400.t1 AT4G37800 50.741 270 128 3 27 295 25 290 4.40e-96 285
MS.gene91400.t1 AT2G06850 53.846 260 116 2 35 294 35 290 3.54e-93 278
MS.gene91400.t1 AT2G06850 57.143 231 95 2 65 295 5 231 3.67e-90 268
MS.gene91400.t1 AT2G14620 45.675 289 151 3 11 296 11 296 1.13e-89 269
MS.gene91400.t1 AT4G03210 46.528 288 142 5 9 294 7 284 2.94e-89 268
MS.gene91400.t1 AT5G57560 44.369 293 142 5 8 294 4 281 7.96e-86 259
MS.gene91400.t1 AT3G23730 47.037 270 133 4 33 297 25 289 2.39e-84 255
MS.gene91400.t1 AT5G57540 48.881 268 127 5 33 297 24 284 1.72e-83 253
MS.gene91400.t1 AT5G57550 46.021 289 145 6 7 294 4 282 2.04e-83 253
MS.gene91400.t1 AT5G57530 47.794 272 132 5 29 297 21 285 3.75e-83 252
MS.gene91400.t1 AT4G25810 43.310 284 157 2 12 294 3 283 1.28e-82 251
MS.gene91400.t1 AT4G03210 52.174 230 104 3 67 294 31 256 1.45e-82 250
MS.gene91400.t1 AT4G30270 43.151 292 140 5 7 297 2 268 3.06e-81 247
MS.gene91400.t1 AT4G25820 46.520 273 134 4 28 296 23 287 6.48e-80 244
MS.gene91400.t1 AT4G14130 43.243 296 156 6 4 297 2 287 2.57e-79 243
MS.gene91400.t1 AT2G14620 49.138 232 114 2 66 296 18 246 6.23e-79 240
MS.gene91400.t1 AT4G13090 42.955 291 157 4 5 294 6 288 3.86e-78 239
MS.gene91400.t1 AT2G14620 49.776 223 108 2 75 296 16 235 2.64e-76 233
MS.gene91400.t1 AT5G48070 40.614 293 158 6 5 295 4 282 7.72e-75 231
MS.gene91400.t1 AT3G25050 41.221 262 147 4 34 294 34 289 2.46e-74 230
MS.gene91400.t1 AT4G28850 40.690 290 159 6 10 295 8 288 8.09e-74 229
MS.gene91400.t1 AT4G13080 40.000 285 164 4 10 294 14 291 7.34e-73 226
MS.gene91400.t1 AT2G18800 40.132 304 150 7 9 295 9 297 9.99e-72 224
MS.gene91400.t1 AT4G30280 40.550 291 156 6 7 295 7 282 6.44e-70 218
MS.gene91400.t1 AT1G65310 43.019 265 140 5 33 295 27 282 3.78e-68 214
MS.gene91400.t1 AT1G65310 43.019 265 140 5 33 295 49 304 4.25e-68 214
MS.gene91400.t1 AT4G30290 40.070 287 152 6 11 295 9 277 3.19e-67 211
MS.gene91400.t1 AT2G01850 35.714 294 181 4 11 300 7 296 1.58e-61 198
MS.gene91400.t1 AT1G32170 38.000 300 176 6 7 300 4 299 3.71e-61 198
MS.gene91400.t1 AT3G44990 37.542 301 158 7 12 294 5 293 8.15e-60 192
MS.gene91400.t1 AT1G14720 35.548 301 184 5 4 300 2 296 2.18e-59 193
MS.gene91400.t1 AT1G10550 35.740 277 160 4 35 294 34 309 8.68e-57 186
MS.gene91400.t1 AT4G18990 35.714 280 165 3 35 300 40 318 3.63e-55 182
MS.gene91400.t1 AT2G36870 34.114 299 175 8 7 294 10 297 4.44e-52 173
MS.gene91400.t1 AT3G48580 33.977 259 149 8 37 294 36 273 5.15e-48 162
MS.gene91400.t1 AT3G48580 36.364 231 126 7 65 294 4 214 1.91e-46 156
MS.gene91400.t1 AT4G18990 35.021 237 133 5 84 300 9 244 6.89e-41 144
MS.gene91400.t1 AT3G48580 28.571 259 143 9 37 294 36 253 2.12e-31 118
MS.gene91400.t1 AT2G36870 35.260 173 98 4 6 167 9 178 1.51e-27 105

Find 64 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATGCTTGGCATCTTTC+AGG 0.170390 1.3:+71915674 MS.gene91400:CDS
AAATCAAGCTCATCTCTTTC+TGG 0.222310 1.3:-71914775 None:intergenic
TTGTTCTTGAACACCCTTAT+TGG 0.227899 1.3:-71915431 None:intergenic
AAGTACATTGGTTTCTCATT+TGG 0.290156 1.3:-71915476 None:intergenic
ACATTTGTTTGAATCAAATA+TGG 0.300118 1.3:-71914826 None:intergenic
GATACCTGTGTCATTGTCTA+AGG 0.305085 1.3:-71914007 None:intergenic
TTGTGGATAGAGTTCCAATA+AGG 0.315911 1.3:+71915417 MS.gene91400:CDS
TCTTTCAGGTGATCAGAAAA+TGG 0.325557 1.3:+71915688 MS.gene91400:CDS
AAGATTGAACTTACACTATC+TGG 0.346292 1.3:-71914945 None:intergenic
CATCTGTAGAAGTAGTAAAA+TGG 0.347942 1.3:-71913966 None:intergenic
AGTACATTGGTTTCTCATTT+GGG 0.354048 1.3:-71915475 None:intergenic
AGCAGAAGCAGCTATGTCTA+AGG 0.356338 1.3:+71913903 MS.gene91400:CDS
GTTGAAACACATTTAGGAAA+TGG 0.376286 1.3:-71915626 None:intergenic
ATGTCTCATCTCACGATTAC+CGG 0.385651 1.3:-71914863 None:intergenic
TCATTTGGGAAGAAATTGTT+TGG 0.386974 1.3:-71915461 None:intergenic
ACAAAACAAAGATATAGATT+TGG 0.393001 1.3:+71914541 MS.gene91400:CDS
GTTGTGGTTGAAACACATTT+AGG 0.398748 1.3:-71915632 None:intergenic
ATCACACCTATTCTATTCTC+TGG 0.408329 1.3:+71914914 MS.gene91400:CDS
ATCAGAAAATGGATTATGCT+TGG 0.410696 1.3:+71915699 MS.gene91400:CDS
CAAACAAATGTGTACAAGAA+TGG 0.414124 1.3:+71914838 MS.gene91400:CDS
TTGCAGATGTGTACAGAAAA+TGG 0.418568 1.3:+71914745 MS.gene91400:intron
ATCAACACTAAAGTCTTTGT+AGG 0.426921 1.3:-71915585 None:intergenic
GTGAGATGAGACATATGCTT+TGG 0.427321 1.3:+71914872 MS.gene91400:CDS
AGTATGAAGCTGAAATTAGT+TGG 0.433947 1.3:+71914571 MS.gene91400:CDS
AAACAAATGTGTACAAGAAT+GGG 0.444792 1.3:+71914839 MS.gene91400:CDS
TGTGGATAGAGTTCCAATAA+GGG 0.449235 1.3:+71915418 MS.gene91400:CDS
GAGCACTCCTCAGGCAAAGT+TGG 0.451574 1.3:-71915773 None:intergenic
ATGATGATAAGCAGCTACTA+TGG 0.459398 1.3:-71913878 None:intergenic
TCAGAAAATGGATTATGCTT+GGG 0.479320 1.3:+71915700 MS.gene91400:CDS
AGGAGTGCTCATTGAGTCCA+TGG 0.481061 1.3:+71915786 MS.gene91400:CDS
GTTATTCCAGAGAATAGAAT+AGG 0.498751 1.3:-71914920 None:intergenic
GGCTGCAAGGAAAAGAAGAA+TGG 0.506963 1.3:-71913857 None:intergenic
GTGTATGGAATGCAGATGAT+TGG 0.516261 1.3:+71915507 MS.gene91400:CDS
ATGTGTACAGAAAATGGTGC+AGG 0.516508 1.3:+71914751 MS.gene91400:CDS
GGACTCAATGAGCACTCCTC+AGG 0.517455 1.3:-71915782 None:intergenic
TTAGTGTTGATGCTTGTCAA+TGG 0.533968 1.3:+71915597 MS.gene91400:CDS
CTTCTACAGATGGACAGATC+TGG 0.534707 1.3:+71913977 MS.gene91400:CDS
ACACTTGAAAACAAGTACAT+TGG 0.541308 1.3:-71915488 None:intergenic
TAGTGTTGATGCTTGTCAAT+GGG 0.548485 1.3:+71915598 MS.gene91400:CDS
TGTATGGAATGCAGATGATT+GGG 0.552558 1.3:+71915508 MS.gene91400:CDS
CCCATGATACATTACTCCCA+TGG 0.558590 1.3:-71915803 None:intergenic
TTAGTTGGAGGTGATTCTGC+TGG 0.558670 1.3:+71914586 MS.gene91400:CDS
GATGATTGGGCCACAAGAGG+TGG 0.559220 1.3:+71915521 MS.gene91400:CDS
GCAGAAGCAGCTATGTCTAA+GGG 0.571565 1.3:+71913904 MS.gene91400:CDS
CTCCTCCTAACCAAAATGGA+TGG 0.573738 1.3:+71913814 None:intergenic
AACAAAGATATAGATTTGGA+TGG 0.576215 1.3:+71914545 MS.gene91400:CDS
TCCTAACCAAAATGGATGGA+GGG 0.577703 1.3:+71913818 None:intergenic
CTCCTAACCAAAATGGATGG+AGG 0.578804 1.3:+71913817 None:intergenic
TGCAATAGTCATAGATGACA+AGG 0.582934 1.3:-71915733 None:intergenic
GGTGGGATCAATATGATGCT+TGG 0.593619 1.3:+71915663 MS.gene91400:CDS
GCAGATGATTGGGCCACAAG+AGG 0.605501 1.3:+71915518 MS.gene91400:CDS
AATGTGTACAAGAATGGGAC+CGG 0.607915 1.3:+71914844 MS.gene91400:CDS
TTGAATGTTTGACAGGATGT+GGG 0.608921 1.3:+71914512 MS.gene91400:intron
ATGAAGCTGAAATTAGTTGG+AGG 0.611631 1.3:+71914574 MS.gene91400:CDS
TAGGTGTGATAGTCCTCAGT+GGG 0.619254 1.3:-71914901 None:intergenic
AAGACAACTTCAGCATAATG+TGG 0.628622 1.3:+71913935 MS.gene91400:CDS
ATTGAACTTACACTATCTGG+TGG 0.629178 1.3:-71914942 None:intergenic
TCTTTGTAGGATGACACAAA+TGG 0.631516 1.3:-71915572 None:intergenic
AAGCAGCTACTATGGCTGCA+AGG 0.637837 1.3:-71913870 None:intergenic
GGAGTGCTCATTGAGTCCAT+GGG 0.646187 1.3:+71915787 MS.gene91400:CDS
TGTGTACAGAAAATGGTGCA+GGG 0.655933 1.3:+71914752 MS.gene91400:CDS
CTCTCCTTAGACAATGACAC+AGG 0.665868 1.3:+71914003 MS.gene91400:CDS
GCTTTGGTTTGATCCCACTG+AGG 0.724888 1.3:+71914888 MS.gene91400:CDS
ATAGGTGTGATAGTCCTCAG+TGG 0.744401 1.3:-71914902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATTCAATACTTAAAAAA+TGG - chr1.3:71914501-71914520 None:intergenic 15.0%
!! AAAAAGACCTTATATTTCAA+CGG + chr1.3:71915305-71915324 MS.gene91400:intron 20.0%
!! ACAAAACAAAGATATAGATT+TGG + chr1.3:71914541-71914560 MS.gene91400:CDS 20.0%
!! ACATTTGTTTGAATCAAATA+TGG - chr1.3:71914829-71914848 None:intergenic 20.0%
!! ACCTTAATTCAAGATATTTA+TGG + chr1.3:71915345-71915364 MS.gene91400:intron 20.0%
!! AGTAAAATGTATGTACAATA+TGG + chr1.3:71915196-71915215 MS.gene91400:intron 20.0%
!! ATGAATATGATTATGTCATA+TGG + chr1.3:71915254-71915273 MS.gene91400:intron 20.0%
!! ATGCTAACAATTAAAACATT+CGG - chr1.3:71914455-71914474 None:intergenic 20.0%
!! TCCATAAATATCTTGAATTA+AGG - chr1.3:71915349-71915368 None:intergenic 20.0%
!!! AAAGTTGAGAGTATAATTTA+TGG + chr1.3:71914364-71914383 MS.gene91400:intron 20.0%
!!! AGTTTAAGACTTTTTGTTTT+TGG + chr1.3:71915120-71915139 MS.gene91400:intron 20.0%
!!! GATTTACATAAACTTACTTT+TGG + chr1.3:71914259-71914278 MS.gene91400:intron 20.0%
!!! TAATTAATGTTGAGATTTTG+AGG + chr1.3:71914475-71914494 MS.gene91400:intron 20.0%
!!! TTGATGTCATTTTTTAACTT+GGG - chr1.3:71915004-71915023 None:intergenic 20.0%
!!! TTTGATGTCATTTTTTAACT+TGG - chr1.3:71915005-71915024 None:intergenic 20.0%
!!! TTTTCGATAGAATTGATTTT+GGG + chr1.3:71914326-71914345 MS.gene91400:intron 20.0%
! AAAATGTATGTACAATATGG+TGG + chr1.3:71915199-71915218 MS.gene91400:intron 25.0%
! AAACAAATGTGTACAAGAAT+GGG + chr1.3:71914839-71914858 MS.gene91400:CDS 25.0%
! AACAAAGATATAGATTTGGA+TGG + chr1.3:71914545-71914564 MS.gene91400:CDS 25.0%
! CAATCTTATATTGCTCTTAT+TGG + chr1.3:71914961-71914980 MS.gene91400:intron 25.0%
! CTAGCAATGATAATTAAACT+AGG - chr1.3:71915226-71915245 None:intergenic 25.0%
! GGATTCATAAAAACACAAAA+AGG - chr1.3:71914692-71914711 None:intergenic 25.0%
! TGTTTGCAAATATGGTAATA+GGG + chr1.3:71915026-71915045 MS.gene91400:intron 25.0%
! TTTCAACCACAACAAAAAAT+TGG + chr1.3:71915642-71915661 MS.gene91400:CDS 25.0%
!! AAATACTCTAAGAGTTTGTT+CGG + chr1.3:71914154-71914173 MS.gene91400:intron 25.0%
!!! AAACTTACTTTTGGATAGTT+TGG + chr1.3:71914268-71914287 MS.gene91400:intron 25.0%
!!! CTTTTCGATAGAATTGATTT+TGG + chr1.3:71914325-71914344 MS.gene91400:intron 25.0%
!!! TGTGTTTTTATGAATCCAAT+TGG + chr1.3:71914695-71914714 MS.gene91400:intron 25.0%
!!! TTAAGACTTTTTGTTTTTGG+TGG + chr1.3:71915123-71915142 MS.gene91400:intron 25.0%
!!! TTAAGTATTGAATGTTTGAC+AGG + chr1.3:71914505-71914524 MS.gene91400:intron 25.0%
AACCACAACAAAAAATTGGT+GGG + chr1.3:71915646-71915665 MS.gene91400:CDS 30.0%
AAGATTGAACTTACACTATC+TGG - chr1.3:71914948-71914967 None:intergenic 30.0%
AAGTCAAACATTATTCTGGA+AGG + chr1.3:71914404-71914423 MS.gene91400:intron 30.0%
ACACTTGAAAACAAGTACAT+TGG - chr1.3:71915491-71915510 None:intergenic 30.0%
ACTGAATGTTGCAAATGAAT+TGG + chr1.3:71915383-71915402 MS.gene91400:intron 30.0%
AGTATGAAGCTGAAATTAGT+TGG + chr1.3:71914571-71914590 MS.gene91400:CDS 30.0%
ATCAACACTAAAGTCTTTGT+AGG - chr1.3:71915588-71915607 None:intergenic 30.0%
ATCTGTACCGTTGAAATATA+AGG - chr1.3:71915315-71915334 None:intergenic 30.0%
CAAACAAATGTGTACAAGAA+TGG + chr1.3:71914838-71914857 MS.gene91400:CDS 30.0%
CATCTGTAGAAGTAGTAAAA+TGG - chr1.3:71913969-71913988 None:intergenic 30.0%
CTGAAATTTAGTACTAGATG+TGG + chr1.3:71914651-71914670 MS.gene91400:intron 30.0%
GAGTAAGTCAAACATTATTC+TGG + chr1.3:71914400-71914419 MS.gene91400:intron 30.0%
GTGTTTGCAAATATGGTAAT+AGG + chr1.3:71915025-71915044 MS.gene91400:intron 30.0%
GTTATTCCAGAGAATAGAAT+AGG - chr1.3:71914923-71914942 None:intergenic 30.0%
GTTGAAACACATTTAGGAAA+TGG - chr1.3:71915629-71915648 None:intergenic 30.0%
TCATTTGGGAAGAAATTGTT+TGG - chr1.3:71915464-71915483 None:intergenic 30.0%
TTGACAATTGAGAAAAGAGA+AGG - chr1.3:71915094-71915113 None:intergenic 30.0%
TTTGGTGGAAATAATAGTGT+AGG + chr1.3:71915138-71915157 MS.gene91400:intron 30.0%
! ACACATCTTTATGCTTTTGT+CGG + chr1.3:71915059-71915078 MS.gene91400:intron 30.0%
! CATCAAAGTGTTTGCAAATA+TGG + chr1.3:71915018-71915037 MS.gene91400:intron 30.0%
! CATTTTACTACTTCTACAGA+TGG + chr1.3:71913967-71913986 MS.gene91400:CDS 30.0%
! GTTTTTATGAATCCAATTGG+TGG + chr1.3:71914698-71914717 MS.gene91400:intron 30.0%
!! AAGTACATTGGTTTCTCATT+TGG - chr1.3:71915479-71915498 None:intergenic 30.0%
!! AGTACATTGGTTTCTCATTT+GGG - chr1.3:71915478-71915497 None:intergenic 30.0%
!! ATCAGAAAATGGATTATGCT+TGG + chr1.3:71915699-71915718 MS.gene91400:CDS 30.0%
!! TCAGAAAATGGATTATGCTT+GGG + chr1.3:71915700-71915719 MS.gene91400:CDS 30.0%
!!! AATTGGAAACAGGTTTTTTG+TGG + chr1.3:71915400-71915419 MS.gene91400:intron 30.0%
!!! ATAGAATTGATTTTGGGACT+AGG + chr1.3:71914332-71914351 MS.gene91400:intron 30.0%
!!! GAGCTTGATTTTGAGTTTTT+GGG + chr1.3:71914787-71914806 MS.gene91400:CDS 30.0%
!!! TGAGCTTGATTTTGAGTTTT+TGG + chr1.3:71914786-71914805 MS.gene91400:CDS 30.0%
!!! TGTACTTGTTTTCAAGTGTA+TGG + chr1.3:71915492-71915511 MS.gene91400:CDS 30.0%
!!! TTATGCTTTTGTCGGTTTAA+GGG + chr1.3:71915067-71915086 MS.gene91400:intron 30.0%
!!! TTTATGCTTTTGTCGGTTTA+AGG + chr1.3:71915066-71915085 MS.gene91400:intron 30.0%
AAATCAAGCTCATCTCTTTC+TGG - chr1.3:71914778-71914797 None:intergenic 35.0%
AAGACAACTTCAGCATAATG+TGG + chr1.3:71913935-71913954 MS.gene91400:CDS 35.0%
ATATGGTAATAGGGCTAAGT+TGG + chr1.3:71915035-71915054 MS.gene91400:intron 35.0%
ATCACACCTATTCTATTCTC+TGG + chr1.3:71914914-71914933 MS.gene91400:CDS 35.0%
ATGAAGCTGAAATTAGTTGG+AGG + chr1.3:71914574-71914593 MS.gene91400:CDS 35.0%
ATGATGATAAGCAGCTACTA+TGG - chr1.3:71913881-71913900 None:intergenic 35.0%
ATGTCATATGGACAGTAACA+AGG + chr1.3:71915266-71915285 MS.gene91400:intron 35.0%
ATTGAACTTACACTATCTGG+TGG - chr1.3:71914945-71914964 None:intergenic 35.0%
ATTGAATGTTTGACAGGATG+TGG + chr1.3:71914511-71914530 MS.gene91400:intron 35.0%
CAACCACAACAAAAAATTGG+TGG + chr1.3:71915645-71915664 MS.gene91400:CDS 35.0%
GTGGACTTGAAAAAACAAAC+TGG + chr1.3:71915540-71915559 MS.gene91400:CDS 35.0%
GTTGCAAATGAATTGGAAAC+AGG + chr1.3:71915390-71915409 MS.gene91400:intron 35.0%
GTTGTGGTTGAAACACATTT+AGG - chr1.3:71915635-71915654 None:intergenic 35.0%
TCTTTGTAGGATGACACAAA+TGG - chr1.3:71915575-71915594 None:intergenic 35.0%
TGCAATAGTCATAGATGACA+AGG - chr1.3:71915736-71915755 None:intergenic 35.0%
TGTATGGAATGCAGATGATT+GGG + chr1.3:71915508-71915527 MS.gene91400:CDS 35.0%
TGTGGATAGAGTTCCAATAA+GGG + chr1.3:71915418-71915437 MS.gene91400:CDS 35.0%
TTGAATGTTTGACAGGATGT+GGG + chr1.3:71914512-71914531 MS.gene91400:intron 35.0%
TTGCAGATGTGTACAGAAAA+TGG + chr1.3:71914745-71914764 MS.gene91400:intron 35.0%
TTGTGGATAGAGTTCCAATA+AGG + chr1.3:71915417-71915436 MS.gene91400:CDS 35.0%
TTGTTCTTGAACACCCTTAT+TGG - chr1.3:71915434-71915453 None:intergenic 35.0%
! CTTTTGGATAGTTTGGATCA+AGG + chr1.3:71914275-71914294 MS.gene91400:intron 35.0%
! GTGGAGTGTTAACAAGAATA+GGG + chr1.3:71914717-71914736 MS.gene91400:intron 35.0%
! TATTCTGGAAGGTACAAATG+TGG + chr1.3:71914415-71914434 MS.gene91400:intron 35.0%
! TCTTTCAGGTGATCAGAAAA+TGG + chr1.3:71915688-71915707 MS.gene91400:CDS 35.0%
! TGGAGTGTTAACAAGAATAG+GGG + chr1.3:71914718-71914737 MS.gene91400:intron 35.0%
!! TAGTGTTGATGCTTGTCAAT+GGG + chr1.3:71915598-71915617 MS.gene91400:CDS 35.0%
!! TTAGTGTTGATGCTTGTCAA+TGG + chr1.3:71915597-71915616 MS.gene91400:CDS 35.0%
!!! ATCCCACCAATTTTTTGTTG+TGG - chr1.3:71915651-71915670 None:intergenic 35.0%
AATGTGTACAAGAATGGGAC+CGG + chr1.3:71914844-71914863 MS.gene91400:CDS 40.0%
ATGTCTCATCTCACGATTAC+CGG - chr1.3:71914866-71914885 None:intergenic 40.0%
ATGTGTACAGAAAATGGTGC+AGG + chr1.3:71914751-71914770 MS.gene91400:CDS 40.0%
CTTGTTAACACTCCACCAAT+TGG - chr1.3:71914713-71914732 None:intergenic 40.0%
GTGAGATGAGACATATGCTT+TGG + chr1.3:71914872-71914891 MS.gene91400:CDS 40.0%
GTGTATGGAATGCAGATGAT+TGG + chr1.3:71915507-71915526 MS.gene91400:CDS 40.0%
TAGTGTAGGACAAGATTGTG+AGG + chr1.3:71915152-71915171 MS.gene91400:intron 40.0%
TATGATGCTTGGCATCTTTC+AGG + chr1.3:71915674-71915693 MS.gene91400:CDS 40.0%
TGTGTACAGAAAATGGTGCA+GGG + chr1.3:71914752-71914771 MS.gene91400:CDS 40.0%
! GATACCTGTGTCATTGTCTA+AGG - chr1.3:71914010-71914029 None:intergenic 40.0%
! GGTGGAGTGTTAACAAGAAT+AGG + chr1.3:71914716-71914735 MS.gene91400:intron 40.0%
!! GAGTTTTTGGGAAACAGAAC+AGG + chr1.3:71914799-71914818 MS.gene91400:CDS 40.0%
!!! TTTTTCAAGTCCACCTCTTG+TGG - chr1.3:71915534-71915553 None:intergenic 40.0%
AGCAGAAGCAGCTATGTCTA+AGG + chr1.3:71913903-71913922 MS.gene91400:CDS 45.0%
ATAGGTGTGATAGTCCTCAG+TGG - chr1.3:71914905-71914924 None:intergenic 45.0%
CTCTCCTTAGACAATGACAC+AGG + chr1.3:71914003-71914022 MS.gene91400:CDS 45.0%
CTTCTACAGATGGACAGATC+TGG + chr1.3:71913977-71913996 MS.gene91400:CDS 45.0%
GCAGAAGCAGCTATGTCTAA+GGG + chr1.3:71913904-71913923 MS.gene91400:CDS 45.0%
GGCTGCAAGGAAAAGAAGAA+TGG - chr1.3:71913860-71913879 None:intergenic 45.0%
GGTGGGATCAATATGATGCT+TGG + chr1.3:71915663-71915682 MS.gene91400:CDS 45.0%
TAGGTGTGATAGTCCTCAGT+GGG - chr1.3:71914904-71914923 None:intergenic 45.0%
TTAGTTGGAGGTGATTCTGC+TGG + chr1.3:71914586-71914605 MS.gene91400:CDS 45.0%
! ACGTTTTCCAACTTTGCCTG+AGG + chr1.3:71915766-71915785 MS.gene91400:CDS 45.0%
AAGCAGCTACTATGGCTGCA+AGG - chr1.3:71913873-71913892 None:intergenic 50.0%
! GGAGTGCTCATTGAGTCCAT+GGG + chr1.3:71915787-71915806 MS.gene91400:CDS 50.0%
!! AGGAGTGCTCATTGAGTCCA+TGG + chr1.3:71915786-71915805 MS.gene91400:CDS 50.0%
!! GCTTTGGTTTGATCCCACTG+AGG + chr1.3:71914888-71914907 MS.gene91400:CDS 50.0%
GAGCACTCCTCAGGCAAAGT+TGG - chr1.3:71915776-71915795 None:intergenic 55.0%
GATGATTGGGCCACAAGAGG+TGG + chr1.3:71915521-71915540 MS.gene91400:CDS 55.0%
GCAGATGATTGGGCCACAAG+AGG + chr1.3:71915518-71915537 MS.gene91400:CDS 55.0%
GGACTCAATGAGCACTCCTC+AGG - chr1.3:71915785-71915804 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 71913829 71915814 71913829 ID=MS.gene91400
chr1.3 mRNA 71913829 71915814 71913829 ID=MS.gene91400.t1;Parent=MS.gene91400
chr1.3 exon 71913829 71914024 71913829 ID=MS.gene91400.t1.exon1;Parent=MS.gene91400.t1
chr1.3 CDS 71913829 71914024 71913829 ID=cds.MS.gene91400.t1;Parent=MS.gene91400.t1
chr1.3 exon 71914527 71914627 71914527 ID=MS.gene91400.t1.exon2;Parent=MS.gene91400.t1
chr1.3 CDS 71914527 71914627 71914527 ID=cds.MS.gene91400.t1;Parent=MS.gene91400.t1
chr1.3 exon 71914751 71914953 71914751 ID=MS.gene91400.t1.exon3;Parent=MS.gene91400.t1
chr1.3 CDS 71914751 71914953 71914751 ID=cds.MS.gene91400.t1;Parent=MS.gene91400.t1
chr1.3 exon 71915412 71915814 71915412 ID=MS.gene91400.t1.exon4;Parent=MS.gene91400.t1
chr1.3 CDS 71915412 71915814 71915412 ID=cds.MS.gene91400.t1;Parent=MS.gene91400.t1
Gene Sequence

>MS.gene91400

ATGGATGGAGGGTACTGTTCTTCATTTTCCATTCTTCTTTTCCTTGCAGCCATAGTAGCTGCTTATCATCATTCAGCAGAAGCAGCTATGTCTAAGGGATCTTTTGAAGACAACTTCAGCATAATGTGGTCTGAAAACCATTTTACTACTTCTACAGATGGACAGATCTGGTATCTCTCCTTAGACAATGACACAGGTATCAAATCAAATGCATGAGCATAACATTAAAATGAGCATTTTGTTGCACTATACACTCTATTATTATGTTATGTTATGTTTTCATTTGATTATTTTATGTAATCTTAAGTATATTGAAAATAGTACAAAATACTCTAAGAGTTTGTTCGGTTCTGCTGTGATAAAAATTGTTTTTGATTGAAGTCGAGTTGAATGTACAGTGATTTGTGTTTCTATACATTCATTAAAAAATGATTTACATAAACTTACTTTTGGATAGTTTGGATCAAGGTTGCTTGTTTGTGTATGTATATATTAGCTTTTCGATAGAATTGATTTTGGGACTAGGATCAATTCTAAAGTTGAGAGTATAATTTATGGTCAAATCATGTTTGAGTAAGTCAAACATTATTCTGGAAGGTACAAATGTGGTTACTAAACATAGTCCGAATGTTTTAATTGTTAGCATTAATTAATGTTGAGATTTTGAGGCCATTTTTTAAGTATTGAATGTTTGACAGGATGTGGGTTTCAAACAAAACAAAGATATAGATTTGGATGGTTCAGTATGAAGCTGAAATTAGTTGGAGGTGATTCTGCTGGTGTTGTGACAGCTTATTATGTAAGTAAACAATTAAATTAGTACTGAAATTTAGTACTAGATGTGGATTCTTTGATGAGTTCCTTTTTGTGTTTTTATGAATCCAATTGGTGGAGTGTTAACAAGAATAGGGGATTGTTGCAGATGTGTACAGAAAATGGTGCAGGGCCAGAAAGAGATGAGCTTGATTTTGAGTTTTTGGGAAACAGAACAGGACAACCATATTTGATTCAAACAAATGTGTACAAGAATGGGACCGGTAATCGTGAGATGAGACATATGCTTTGGTTTGATCCCACTGAGGACTATCACACCTATTCTATTCTCTGGAATAACCACCAGATAGTGTAAGTTCAATCTTATATTGCTCTTATTGGTGTTCTTAATCTTATAACCCAAGTTAAAAAATGACATCAAAGTGTTTGCAAATATGGTAATAGGGCTAAGTTGGTACACATCTTTATGCTTTTGTCGGTTTAAGGGTCCTTCTCTTTTCTCAATTGTCAAAAAAGTAGTTTAAGACTTTTTGTTTTTGGTGGAAATAATAGTGTAGGACAAGATTGTGAGGTTAAAGAAACGAATCTAGTTCAGTAAAATGTATGTACAATATGGTGGACCTAGTTTAATTATCATTGCTAGCTGCTCATATGAATATGATTATGTCATATGGACAGTAACAAGGAAAGAGTGTTTCTTTTAAAAAGACCTTATATTTCAACGGTACAGATTATTTAAAATACCTTAATTCAAGATATTTATGGAATTTTTTTTTGTTAACTGAATGTTGCAAATGAATTGGAAACAGGTTTTTTGTGGATAGAGTTCCAATAAGGGTGTTCAAGAACAATGACAAACCAAACAATTTCTTCCCAAATGAGAAACCAATGTACTTGTTTTCAAGTGTATGGAATGCAGATGATTGGGCCACAAGAGGTGGACTTGAAAAAACAAACTGGAAATTAGCACCATTTGTGTCATCCTACAAAGACTTTAGTGTTGATGCTTGTCAATGGGAAGATCCATTTCCTAAATGTGTTTCAACCACAACAAAAAATTGGTGGGATCAATATGATGCTTGGCATCTTTCAGGTGATCAGAAAATGGATTATGCTTGGGTTCAAAGAAACCTTGTCATCTATGACTATTGCAATGATTCTGAACGTTTTCCAACTTTGCCTGAGGAGTGCTCATTGAGTCCATGGGAGTAA
Protein sequence

>MS.gene91400.t1

MDGGYCSSFSILLFLAAIVAAYHHSAEAAMSKGSFEDNFSIMWSENHFTTSTDGQIWYLSLDNDTGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPERDELDFEFLGNRTGQPYLIQTNVYKNGTGNREMRHMLWFDPTEDYHTYSILWNNHQIVFFVDRVPIRVFKNNDKPNNFFPNEKPMYLFSSVWNADDWATRGGLEKTNWKLAPFVSSYKDFSVDACQWEDPFPKCVSTTTKNWWDQYDAWHLSGDQKMDYAWVQRNLVIYDYCNDSERFPTLPEECSLSPWE