Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92666.t1 | XP_003599439.1 | 86.7 | 316 | 30 | 2 | 1 | 309 | 1 | 311 | 6.10E-136 | 493.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92666.t1 | Q9ZSL6 | 53.2 | 218 | 93 | 1 | 108 | 316 | 114 | 331 | 3.7e-57 | 223.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92666.t1 | G7J0X0 | 86.7 | 316 | 30 | 2 | 1 | 309 | 1 | 311 | 4.4e-136 | 493.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene92666 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene92666 | 0.823362 | 1.44E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene92666 | -0.815458 | 9.15E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene92666 | 0.826086 | 3.29E-54 | -1.69E-46 |
| MS.gene051240 | MS.gene92666 | 0.817754 | 2.80E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene92666 | 0.810129 | 1.34E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene92666 | 0.820362 | 7.14E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene92666 | 0.820828 | 5.58E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene92666 | 0.809763 | 1.61E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene92666 | -0.811266 | 7.63E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene92666 | 0.834723 | 2.54E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene92666 | 0.835498 | 1.62E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene92666 | 0.803413 | 3.53E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene92666 | 0.812077 | 5.08E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene92666 | 0.833363 | 5.57E-56 | -1.69E-46 |
| MS.gene056612 | MS.gene92666 | 0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene92666 | 0.824397 | 8.25E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene92666 | 0.814219 | 1.72E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene92666 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene92666 | 0.839966 | 1.16E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene92666 | 0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene92666 | 0.802399 | 5.71E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene92666 | 0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene92666 | 0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene92666 | 0.835943 | 1.25E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene92666 | 0.840604 | 7.87E-58 | -1.69E-46 |
| MS.gene060407 | MS.gene92666 | 0.828624 | 8.11E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene92666 | 0.847864 | 8.83E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052009 | MS.gene92666 | PPI |
| MS.gene032180 | MS.gene92666 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92666.t1 | MTR_3g033420 | 88.291 | 316 | 25 | 2 | 1 | 309 | 1 | 311 | 2.37e-179 | 502 |
| MS.gene92666.t1 | MTR_7g101840 | 35.610 | 205 | 120 | 2 | 113 | 305 | 254 | 458 | 5.43e-34 | 131 |
| MS.gene92666.t1 | MTR_3g033150 | 98.387 | 62 | 1 | 0 | 248 | 309 | 1 | 62 | 1.29e-33 | 121 |
| MS.gene92666.t1 | MTR_3g118290 | 37.267 | 161 | 101 | 0 | 165 | 325 | 335 | 495 | 1.16e-27 | 113 |
| MS.gene92666.t1 | MTR_0172s0030 | 34.137 | 249 | 140 | 6 | 71 | 298 | 149 | 394 | 2.14e-27 | 112 |
| MS.gene92666.t1 | MTR_1g063850 | 29.258 | 229 | 145 | 3 | 93 | 309 | 243 | 466 | 1.08e-26 | 110 |
| MS.gene92666.t1 | MTR_1g007370 | 33.824 | 136 | 90 | 0 | 165 | 300 | 317 | 452 | 4.62e-20 | 91.3 |
| MS.gene92666.t1 | MTR_1g007370 | 42.308 | 78 | 45 | 0 | 165 | 242 | 317 | 394 | 1.85e-16 | 79.7 |
| MS.gene92666.t1 | MTR_3g090900 | 30.488 | 164 | 109 | 3 | 148 | 307 | 260 | 422 | 9.09e-12 | 66.2 |
| MS.gene92666.t1 | MTR_3g090900 | 30.488 | 164 | 109 | 3 | 148 | 307 | 260 | 422 | 1.15e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92666.t1 | AT5G13730 | 53.211 | 218 | 93 | 1 | 108 | 316 | 114 | 331 | 4.50e-72 | 229 |
| MS.gene92666.t1 | AT1G08540 | 30.657 | 274 | 173 | 4 | 64 | 325 | 225 | 493 | 8.03e-31 | 122 |
| MS.gene92666.t1 | AT2G36990 | 32.127 | 221 | 134 | 4 | 110 | 317 | 241 | 458 | 2.27e-29 | 118 |
| MS.gene92666.t1 | AT1G64860 | 28.614 | 339 | 190 | 9 | 7 | 298 | 59 | 392 | 4.16e-28 | 114 |
| MS.gene92666.t1 | AT1G64860 | 28.614 | 339 | 190 | 9 | 7 | 298 | 59 | 392 | 6.92e-28 | 113 |
| MS.gene92666.t1 | AT3G53920 | 37.500 | 96 | 60 | 0 | 165 | 260 | 333 | 428 | 1.50e-15 | 77.8 |
| MS.gene92666.t1 | AT3G53920 | 33.088 | 136 | 79 | 2 | 119 | 242 | 275 | 410 | 3.77e-15 | 76.3 |
Find 56 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAGTTTGGTACAAATT+TGG | 0.185616 | 3.1:-23877182 | MS.gene92666:CDS |
| TTTGGTACAAATTTGGTTAA+TGG | 0.206590 | 3.1:-23877175 | MS.gene92666:CDS |
| GCTATAAATGTTGCAGCTTC+TGG | 0.215039 | 3.1:-23877088 | MS.gene92666:CDS |
| GACAGCTTACATCCTCTATT+TGG | 0.232809 | 3.1:+23876208 | None:intergenic |
| AATGTTGCAGCTTCTGGAAT+TGG | 0.284508 | 3.1:-23877082 | MS.gene92666:CDS |
| ACTATTATACCTTCAAAGTT+TGG | 0.325948 | 3.1:-23877193 | MS.gene92666:CDS |
| ACAAGGCATGATTAAAGCTT+TGG | 0.334814 | 3.1:-23876161 | MS.gene92666:CDS |
| TATATATAGGGAGAAAAGTA+TGG | 0.356876 | 3.1:-23875461 | MS.gene92666:intron |
| ATAGCTCTGTCCAAAGATAT+TGG | 0.370473 | 3.1:+23875302 | None:intergenic |
| GAGCAGACAACCAATATCTT+TGG | 0.381318 | 3.1:-23875312 | MS.gene92666:CDS |
| GAAGTCCAATGGTTCCTTCC+TGG | 0.383736 | 3.1:+23876254 | None:intergenic |
| GGAACCATTGGACTTCTTCA+TGG | 0.384588 | 3.1:-23876247 | MS.gene92666:CDS |
| GTTGTAGGGTCTGTGACATC+AGG | 0.407779 | 3.1:-23876941 | MS.gene92666:CDS |
| AGCTGCATCTACAGCAGTAT+TGG | 0.416901 | 3.1:+23877108 | None:intergenic |
| AGCTGTCTACATATGTTTAC+TGG | 0.421708 | 3.1:-23876192 | MS.gene92666:CDS |
| CACCGGTAATCTGACTAATC+TGG | 0.431896 | 3.1:+23876129 | None:intergenic |
| ATGGCAACCATGCATGCATT+TGG | 0.436551 | 3.1:-23874587 | MS.gene92666:CDS |
| TGGTTGCCATTGATTGCATC+AGG | 0.442561 | 3.1:+23874600 | None:intergenic |
| GCCATTGATTGCATCAGGAT+TGG | 0.446496 | 3.1:+23874605 | None:intergenic |
| GTCCAGATTAGTCAGATTAC+CGG | 0.449365 | 3.1:-23876131 | MS.gene92666:intron |
| TTGAGACAGAAAGAGGTTGT+AGG | 0.453219 | 3.1:-23876956 | MS.gene92666:CDS |
| AAATTTGTACCAAACTTTGA+AGG | 0.464711 | 3.1:+23877184 | None:intergenic |
| CAATTTCTTGAGACAGAAAG+AGG | 0.469033 | 3.1:-23876963 | MS.gene92666:CDS |
| ATGATATGAGGAGGAAGAGA+AGG | 0.474045 | 3.1:-23877039 | MS.gene92666:CDS |
| CAATGGTTCCTTCCTGGATG+AGG | 0.475578 | 3.1:+23876260 | None:intergenic |
| GAGAAATTTGATCCAAATAG+AGG | 0.478360 | 3.1:-23876220 | MS.gene92666:CDS |
| GCAATGGAATTGATGATATG+AGG | 0.483651 | 3.1:-23877051 | MS.gene92666:CDS |
| GCAGCACGTTATCAAGGAAA+AGG | 0.498318 | 3.1:-23876298 | MS.gene92666:CDS |
| TCCAATCCTGATGCAATCAA+TGG | 0.501851 | 3.1:-23874606 | MS.gene92666:CDS |
| TGAGCTTTGTTTATGTCTCA+AGG | 0.505679 | 3.1:-23876894 | MS.gene92666:intron |
| TGAGACAGAAAGAGGTTGTA+GGG | 0.518402 | 3.1:-23876955 | MS.gene92666:CDS |
| CAGTATTAAGTTGCTCTGAT+CGG | 0.520178 | 3.1:+23875277 | None:intergenic |
| TCAATCGCAGCACGTTATCA+AGG | 0.523165 | 3.1:-23876304 | MS.gene92666:CDS |
| CTCATCCAGGAAGGAACCAT+TGG | 0.527839 | 3.1:-23876259 | MS.gene92666:CDS |
| CTGTAAAACTTGTTTCTGAA+AGG | 0.534187 | 3.1:-23875334 | MS.gene92666:CDS |
| AACTTTGAAGGTATAATAGT+AGG | 0.540873 | 3.1:+23877196 | None:intergenic |
| AGAGGAGCCAAATGCATGCA+TGG | 0.548403 | 3.1:+23874580 | None:intergenic |
| TCAGCAATTTCATTATATGT+CGG | 0.554776 | 3.1:+23875380 | None:intergenic |
| TTGTAGGGTCTGTGACATCA+GGG | 0.556165 | 3.1:-23876940 | MS.gene92666:CDS |
| CAAAGAATGACAGAACATGA+AGG | 0.577006 | 3.1:-23876418 | MS.gene92666:CDS |
| GGAATTGGAAAAGAGTGCAA+TGG | 0.594814 | 3.1:-23877067 | MS.gene92666:CDS |
| TGCTCCATGAAGAAGTCCAA+TGG | 0.596543 | 3.1:+23876243 | None:intergenic |
| AAAGAATGACAGAACATGAA+GGG | 0.599007 | 3.1:-23876417 | MS.gene92666:CDS |
| ATAGGGAGAAAAGTATGGAA+TGG | 0.600118 | 3.1:-23875456 | MS.gene92666:intron |
| AAGCATTCAAGACCTCATCC+AGG | 0.605269 | 3.1:-23876272 | MS.gene92666:CDS |
| TCAGAGCAACTTAATACTGA+AGG | 0.606839 | 3.1:-23875273 | MS.gene92666:intron |
| TGGTGATGCATTAGTCATTG+TGG | 0.612568 | 3.1:-23877155 | MS.gene92666:CDS |
| TGTCTACATATGTTTACTGG+TGG | 0.613609 | 3.1:-23876189 | MS.gene92666:CDS |
| GTTTACTGGTGGATTAAACA+AGG | 0.614224 | 3.1:-23876178 | MS.gene92666:CDS |
| TGGAAGTGATGTAAGAGACA+TGG | 0.620101 | 3.1:+23877264 | None:intergenic |
| ATTCAAGACCTCATCCAGGA+AGG | 0.641921 | 3.1:-23876268 | MS.gene92666:CDS |
| GACATATAATGAAATTGCTG+AGG | 0.644481 | 3.1:-23875378 | MS.gene92666:CDS |
| TCTTAAGACGAAGACTGAGG+CGG | 0.681542 | 3.1:-23875406 | MS.gene92666:CDS |
| AGATTAGCTCGTGATTATCG+CGG | 0.696504 | 3.1:-23876337 | MS.gene92666:CDS |
| ATGTCTTAAGACGAAGACTG+AGG | 0.725315 | 3.1:-23875409 | MS.gene92666:CDS |
| ATGGAATTGATGATATGAGG+AGG | 0.728394 | 3.1:-23877048 | MS.gene92666:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAACTTTTTTTG+GGG | - | chr3.1:23875741-23875760 | MS.gene92666:intron | 10.0% |
| !! | AATGATTAATGAATTTAACA+GGG | + | chr3.1:23875272-23875291 | None:intergenic | 15.0% |
| !! | AGAAAAAGAAGAAAAAATTT+GGG | - | chr3.1:23874824-23874843 | MS.gene92666:intron | 15.0% |
| !! | CTTAAAAATATTATGAAAAG+TGG | - | chr3.1:23875186-23875205 | MS.gene92666:intron | 15.0% |
| !! | TAATAAGAATAAGAATGTAT+AGG | + | chr3.1:23876625-23876644 | None:intergenic | 15.0% |
| !!! | CTTTTCATAATATTTTTAAG+TGG | + | chr3.1:23875186-23875205 | None:intergenic | 15.0% |
| !!! | TTTTTTATAACTTTTTTTGG+GGG | - | chr3.1:23875742-23875761 | MS.gene92666:intron | 15.0% |
| !! | ATAAACCGGAAAAATAAAAT+TGG | - | chr3.1:23876206-23876225 | MS.gene92666:CDS | 20.0% |
| !! | GAATGATTAATGAATTTAAC+AGG | + | chr3.1:23875273-23875292 | None:intergenic | 20.0% |
| !! | GAGAAAAAGAAGAAAAAATT+TGG | - | chr3.1:23874823-23874842 | MS.gene92666:intron | 20.0% |
| !! | GAGATTGTAATATTATACTT+TGG | - | chr3.1:23876779-23876798 | MS.gene92666:intron | 20.0% |
| !! | GTTTAGTAGATCAATTTAAT+TGG | + | chr3.1:23875331-23875350 | None:intergenic | 20.0% |
| !! | TAGATCAATTTAATTGGTTA+AGG | + | chr3.1:23875325-23875344 | None:intergenic | 20.0% |
| !! | TATAAAAAAAAATTCCTCAC+CGG | + | chr3.1:23875731-23875750 | None:intergenic | 20.0% |
| !! | TTCATAGAATAGTTGTAAAA+TGG | + | chr3.1:23875810-23875829 | None:intergenic | 20.0% |
| !! | TTGAACATAATTAACATACA+TGG | - | chr3.1:23875294-23875313 | MS.gene92666:CDS | 20.0% |
| !!! | AAAAAATTTGGGATGTATAA+TGG | - | chr3.1:23874835-23874854 | MS.gene92666:intron | 20.0% |
| !!! | AGTAACCAATTTTATTTTTC+CGG | + | chr3.1:23876214-23876233 | None:intergenic | 20.0% |
| !!! | ATTTTACAACTATTCTATGA+AGG | - | chr3.1:23875809-23875828 | MS.gene92666:intron | 20.0% |
| !!! | TGGTTAGTTTCTTATATATA+GGG | - | chr3.1:23876367-23876386 | MS.gene92666:CDS | 20.0% |
| !!! | TTGGTTAGTTTCTTATATAT+AGG | - | chr3.1:23876366-23876385 | MS.gene92666:CDS | 20.0% |
| !!! | TTTATTTTTCCGGTTTATAA+CGG | + | chr3.1:23876204-23876223 | None:intergenic | 20.0% |
| ! | AAACATGAAGCATACATAAA+TGG | + | chr3.1:23877152-23877171 | None:intergenic | 25.0% |
| ! | AAATTTGTACCAAACTTTGA+AGG | + | chr3.1:23874659-23874678 | None:intergenic | 25.0% |
| ! | ACTATTATACCTTCAAAGTT+TGG | - | chr3.1:23874647-23874666 | MS.gene92666:intron | 25.0% |
| ! | AGTGAATTGTGAAAACTTAA+CGG | + | chr3.1:23876033-23876052 | None:intergenic | 25.0% |
| ! | ATATTATACTTTGGACTCAA+TGG | - | chr3.1:23876788-23876807 | MS.gene92666:intron | 25.0% |
| ! | GACTGTTTATTATGAATGTT+TGG | - | chr3.1:23876347-23876366 | MS.gene92666:CDS | 25.0% |
| ! | TACTAAACAATGATATTTGC+TGG | - | chr3.1:23875343-23875362 | MS.gene92666:CDS | 25.0% |
| ! | TATATATAGGGAGAAAAGTA+TGG | - | chr3.1:23876379-23876398 | MS.gene92666:CDS | 25.0% |
| ! | TCAGCAATTTCATTATATGT+CGG | + | chr3.1:23876463-23876482 | None:intergenic | 25.0% |
| ! | TTCAAAGTTTGGTACAAATT+TGG | - | chr3.1:23874658-23874677 | MS.gene92666:intron | 25.0% |
| ! | TTTGGTACAAATTTGGTTAA+TGG | - | chr3.1:23874665-23874684 | MS.gene92666:intron | 25.0% |
| !! | AACTTTGAAGGTATAATAGT+AGG | + | chr3.1:23874647-23874666 | None:intergenic | 25.0% |
| !! | GTAAATTTTGTTGAAGTGAA+TGG | + | chr3.1:23874625-23874644 | None:intergenic | 25.0% |
| !! | GTTAACGATGTTTAAAATTG+TGG | - | chr3.1:23875208-23875227 | MS.gene92666:intron | 25.0% |
| !!! | TTCTGAAATTGTGACTAAAA+TGG | + | chr3.1:23875062-23875081 | None:intergenic | 25.0% |
| AAAGAATGACAGAACATGAA+GGG | - | chr3.1:23875423-23875442 | MS.gene92666:CDS | 30.0% | |
| AAAGCTGTTGAAACTATCAA+GGG | - | chr3.1:23876841-23876860 | MS.gene92666:intron | 30.0% | |
| ACGATGATGATATATAATGC+AGG | - | chr3.1:23876649-23876668 | MS.gene92666:intron | 30.0% | |
| AGTGATATACCGTTATAAAC+CGG | - | chr3.1:23876192-23876211 | MS.gene92666:CDS | 30.0% | |
| ATTGTGTGTTGAATAACAAC+AGG | - | chr3.1:23875373-23875392 | MS.gene92666:CDS | 30.0% | |
| CTTACTATGCAATACTTCTA+TGG | - | chr3.1:23876298-23876317 | MS.gene92666:CDS | 30.0% | |
| GAAATTGTGACTAAAATGGT+GGG | + | chr3.1:23875058-23875077 | None:intergenic | 30.0% | |
| GACATATAATGAAATTGCTG+AGG | - | chr3.1:23876462-23876481 | MS.gene92666:intron | 30.0% | |
| GAGAAATTTGATCCAAATAG+AGG | - | chr3.1:23875620-23875639 | MS.gene92666:intron | 30.0% | |
| GTCAGTAAAAGTGATAAGTA+AGG | - | chr3.1:23876145-23876164 | MS.gene92666:CDS | 30.0% | |
| GTCCTAGAATTGTAATCTTA+AGG | - | chr3.1:23875148-23875167 | MS.gene92666:intron | 30.0% | |
| GTCCTTAAGATTACAATTCT+AGG | + | chr3.1:23875153-23875172 | None:intergenic | 30.0% | |
| TAGTTGTAGCAAAAACAACA+TGG | - | chr3.1:23877091-23877110 | MS.gene92666:CDS | 30.0% | |
| TGAAATTGTGACTAAAATGG+TGG | + | chr3.1:23875059-23875078 | None:intergenic | 30.0% | |
| ! | ACTTTTACTGACGTATGTTT+CGG | + | chr3.1:23876137-23876156 | None:intergenic | 30.0% |
| ! | TTAACTAGACGAAGTTTGTT+AGG | - | chr3.1:23876067-23876086 | MS.gene92666:intron | 30.0% |
| !! | CTGTAAAACTTGTTTCTGAA+AGG | - | chr3.1:23876506-23876525 | MS.gene92666:intron | 30.0% |
| !! | GTTTTTAGAGATGGAAAAGT+TGG | + | chr3.1:23874599-23874618 | None:intergenic | 30.0% |
| !!! | CACTATTTTTGTAGTCTCTT+TGG | - | chr3.1:23876237-23876256 | MS.gene92666:CDS | 30.0% |
| AATGGTTGCAAAAATTGCAG+AGG | - | chr3.1:23876402-23876421 | MS.gene92666:CDS | 35.0% | |
| ACAAGGCATGATTAAAGCTT+TGG | - | chr3.1:23875679-23875698 | MS.gene92666:intron | 35.0% | |
| AGCTGTCTACATATGTTTAC+TGG | - | chr3.1:23875648-23875667 | MS.gene92666:intron | 35.0% | |
| ATAATGCAGGAGATTATACC+AGG | - | chr3.1:23876662-23876681 | MS.gene92666:intron | 35.0% | |
| CAAAGAATGACAGAACATGA+AGG | - | chr3.1:23875422-23875441 | MS.gene92666:CDS | 35.0% | |
| CAATTTCTTGAGACAGAAAG+AGG | - | chr3.1:23874877-23874896 | MS.gene92666:intron | 35.0% | |
| CATATCAAACTCGTATCTCA+AGG | + | chr3.1:23877002-23877021 | None:intergenic | 35.0% | |
| CTATCTCTTCAAAAGACAGA+GGG | + | chr3.1:23876820-23876839 | None:intergenic | 35.0% | |
| GAAAGCTGTTGAAACTATCA+AGG | - | chr3.1:23876840-23876859 | MS.gene92666:intron | 35.0% | |
| TAACTAAAGACAACCATGCA+CGG | + | chr3.1:23875967-23875986 | None:intergenic | 35.0% | |
| TATCTCTTCAAAAGACAGAG+GGG | + | chr3.1:23876819-23876838 | None:intergenic | 35.0% | |
| TCAGAGCAACTTAATACTGA+AGG | - | chr3.1:23876567-23876586 | MS.gene92666:intron | 35.0% | |
| TGTCTACATATGTTTACTGG+TGG | - | chr3.1:23875651-23875670 | MS.gene92666:intron | 35.0% | |
| TGTGGTTTGATTGTGTTATG+TGG | - | chr3.1:23875226-23875245 | MS.gene92666:intron | 35.0% | |
| TGTGTTGAATAACAACAGGA+GGG | - | chr3.1:23875377-23875396 | MS.gene92666:CDS | 35.0% | |
| ! | ATAGCTCTGTCCAAAGATAT+TGG | + | chr3.1:23876541-23876560 | None:intergenic | 35.0% |
| ! | ATAGGGAGAAAAGTATGGAA+TGG | - | chr3.1:23876384-23876403 | MS.gene92666:CDS | 35.0% |
| ! | ATGGAATTGATGATATGAGG+AGG | - | chr3.1:23874792-23874811 | MS.gene92666:intron | 35.0% |
| ! | CAGTATTAAGTTGCTCTGAT+CGG | + | chr3.1:23876566-23876585 | None:intergenic | 35.0% |
| ! | CTTTTACAGAAAGTGACTCT+TGG | - | chr3.1:23877062-23877081 | MS.gene92666:CDS | 35.0% |
| ! | GCAATGGAATTGATGATATG+AGG | - | chr3.1:23874789-23874808 | MS.gene92666:intron | 35.0% |
| !! | GTTTACTGGTGGATTAAACA+AGG | - | chr3.1:23875662-23875681 | MS.gene92666:intron | 35.0% |
| !! | TAGACGAAGTTTGTTAGGTA+TGG | - | chr3.1:23876072-23876091 | MS.gene92666:intron | 35.0% |
| !! | TGAGCTTTGTTTATGTCTCA+AGG | - | chr3.1:23874946-23874965 | MS.gene92666:intron | 35.0% |
| !!! | GAATGGTGTGTTTTTAGAGA+TGG | + | chr3.1:23874608-23874627 | None:intergenic | 35.0% |
| !!! | GTTTTTGAGTTCAACAGAAG+AGG | - | chr3.1:23874922-23874941 | MS.gene92666:intron | 35.0% |
| AGGACCAGTTGAAATGATTC+CGG | - | chr3.1:23876682-23876701 | MS.gene92666:intron | 40.0% | |
| ATGATATGAGGAGGAAGAGA+AGG | - | chr3.1:23874801-23874820 | MS.gene92666:intron | 40.0% | |
| ATGTCTTAAGACGAAGACTG+AGG | - | chr3.1:23876431-23876450 | MS.gene92666:CDS | 40.0% | |
| ATTAGTCAGATTACCGTGCA+TGG | - | chr3.1:23875951-23875970 | MS.gene92666:intron | 40.0% | |
| CCTATCTCTTCAAAAGACAG+AGG | + | chr3.1:23876821-23876840 | None:intergenic | 40.0% | |
| GACAGCTTACATCCTCTATT+TGG | + | chr3.1:23875635-23875654 | None:intergenic | 40.0% | |
| GAGAGAATCAGACAGATTCA+TGG | - | chr3.1:23876863-23876882 | MS.gene92666:intron | 40.0% | |
| GAGCAGACAACCAATATCTT+TGG | - | chr3.1:23876528-23876547 | MS.gene92666:intron | 40.0% | |
| GCTATAAATGTTGCAGCTTC+TGG | - | chr3.1:23874752-23874771 | MS.gene92666:intron | 40.0% | |
| GTGTGTTGAATAACAACAGG+AGG | - | chr3.1:23875376-23875395 | MS.gene92666:CDS | 40.0% | |
| GTGTTGAATAACAACAGGAG+GGG | - | chr3.1:23875378-23875397 | MS.gene92666:CDS | 40.0% | |
| TCCAATCCTGATGCAATCAA+TGG | - | chr3.1:23877234-23877253 | MS.gene92666:CDS | 40.0% | |
| TGAAATGATTCCGGAGAAGA+TGG | - | chr3.1:23876691-23876710 | MS.gene92666:intron | 40.0% | |
| TGAGACAGAAAGAGGTTGTA+GGG | - | chr3.1:23874885-23874904 | MS.gene92666:intron | 40.0% | |
| TGTTGAATAACAACAGGAGG+GGG | - | chr3.1:23875379-23875398 | MS.gene92666:CDS | 40.0% | |
| TTCTCCGGAATCATTTCAAC+TGG | + | chr3.1:23876689-23876708 | None:intergenic | 40.0% | |
| TTGAGACAGAAAGAGGTTGT+AGG | - | chr3.1:23874884-23874903 | MS.gene92666:intron | 40.0% | |
| TTTGTTAGGTATGGTGCATG+TGG | - | chr3.1:23876081-23876100 | MS.gene92666:intron | 40.0% | |
| ! | AGATTAGCTCGTGATTATCG+CGG | - | chr3.1:23875503-23875522 | MS.gene92666:intron | 40.0% |
| ! | GGAATTGGAAAAGAGTGCAA+TGG | - | chr3.1:23874773-23874792 | MS.gene92666:intron | 40.0% |
| ! | GTCCAGATTAGTCAGATTAC+CGG | - | chr3.1:23875709-23875728 | MS.gene92666:intron | 40.0% |
| ! | TGGTGATGCATTAGTCATTG+TGG | - | chr3.1:23874685-23874704 | MS.gene92666:intron | 40.0% |
| ! | TTTTTGAACCGTGTCTCTTG+AGG | - | chr3.1:23875833-23875852 | MS.gene92666:intron | 40.0% |
| !! | AATGTTGCAGCTTCTGGAAT+TGG | - | chr3.1:23874758-23874777 | MS.gene92666:intron | 40.0% |
| !! | CCTCTGTCTTTTGAAGAGAT+AGG | - | chr3.1:23876818-23876837 | MS.gene92666:intron | 40.0% |
| !!! | ATAACTTTTTTTGGGGGCGA+GGG | - | chr3.1:23875748-23875767 | MS.gene92666:intron | 40.0% |
| !!! | TATAACTTTTTTTGGGGGCG+AGG | - | chr3.1:23875747-23875766 | MS.gene92666:intron | 40.0% |
| AAGCATTCAAGACCTCATCC+AGG | - | chr3.1:23875568-23875587 | MS.gene92666:intron | 45.0% | |
| AGAGGCAGTTAGTGAAGCAA+GGG | - | chr3.1:23876717-23876736 | MS.gene92666:intron | 45.0% | |
| AGCTGCATCTACAGCAGTAT+TGG | + | chr3.1:23874735-23874754 | None:intergenic | 45.0% | |
| ATGGCAACCATGCATGCATT+TGG | - | chr3.1:23877253-23877272 | MS.gene92666:CDS | 45.0% | |
| ATTCAAGACCTCATCCAGGA+AGG | - | chr3.1:23875572-23875591 | MS.gene92666:intron | 45.0% | |
| CACCGGTAATCTGACTAATC+TGG | + | chr3.1:23875714-23875733 | None:intergenic | 45.0% | |
| CCTTGTAACCTCAAGAGACA+CGG | + | chr3.1:23875844-23875863 | None:intergenic | 45.0% | |
| GCAGCACGTTATCAAGGAAA+AGG | - | chr3.1:23875542-23875561 | MS.gene92666:intron | 45.0% | |
| GGAACCATTGGACTTCTTCA+TGG | - | chr3.1:23875593-23875612 | MS.gene92666:intron | 45.0% | |
| GGAATCATTTCAACTGGTCC+TGG | + | chr3.1:23876683-23876702 | None:intergenic | 45.0% | |
| TCAATCGCAGCACGTTATCA+AGG | - | chr3.1:23875536-23875555 | MS.gene92666:intron | 45.0% | |
| TCTTAAGACGAAGACTGAGG+CGG | - | chr3.1:23876434-23876453 | MS.gene92666:CDS | 45.0% | |
| TGCTCCATGAAGAAGTCCAA+TGG | + | chr3.1:23875600-23875619 | None:intergenic | 45.0% | |
| TTGTAGGGTCTGTGACATCA+GGG | - | chr3.1:23874900-23874919 | MS.gene92666:intron | 45.0% | |
| ! | GATTAGTCAGATTACCGGTG+AGG | - | chr3.1:23875714-23875733 | MS.gene92666:intron | 45.0% |
| ! | GCCATTGATTGCATCAGGAT+TGG | + | chr3.1:23877238-23877257 | None:intergenic | 45.0% |
| ! | TGGTTGCCATTGATTGCATC+AGG | + | chr3.1:23877243-23877262 | None:intergenic | 45.0% |
| !!! | TAACTTTTTTTGGGGGCGAG+GGG | - | chr3.1:23875749-23875768 | MS.gene92666:intron | 45.0% |
| !!! | TTTTTTTTATAACTTTTTTT+GGG | - | chr3.1:23875740-23875759 | MS.gene92666:intron | 5.0% |
| !!! | TTTTTTTTTATAACTTTTTT+TGG | - | chr3.1:23875739-23875758 | MS.gene92666:intron | 5.0% |
| AGAGGAGCCAAATGCATGCA+TGG | + | chr3.1:23877263-23877282 | None:intergenic | 50.0% | |
| CAATGGTTCCTTCCTGGATG+AGG | + | chr3.1:23875583-23875602 | None:intergenic | 50.0% | |
| CCGTGTCTCTTGAGGTTACA+AGG | - | chr3.1:23875841-23875860 | MS.gene92666:intron | 50.0% | |
| CTCATCCAGGAAGGAACCAT+TGG | - | chr3.1:23875581-23875600 | MS.gene92666:intron | 50.0% | |
| GAAGTCCAATGGTTCCTTCC+TGG | + | chr3.1:23875589-23875608 | None:intergenic | 50.0% | |
| GAGAGGCAGTTAGTGAAGCA+AGG | - | chr3.1:23876716-23876735 | MS.gene92666:intron | 50.0% | |
| GAGGCAGTTAGTGAAGCAAG+GGG | - | chr3.1:23876718-23876737 | MS.gene92666:intron | 50.0% | |
| GTTAGGTATGGTGCATGTGG+AGG | - | chr3.1:23876084-23876103 | MS.gene92666:intron | 50.0% | |
| GTTGTAGGGTCTGTGACATC+AGG | - | chr3.1:23874899-23874918 | MS.gene92666:intron | 50.0% | |
| TGCCTCTCAACCATCTTCTC+CGG | + | chr3.1:23876704-23876723 | None:intergenic | 50.0% | |
| TTCCGGAGAAGATGGTTGAG+AGG | - | chr3.1:23876699-23876718 | MS.gene92666:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 23874578 | 23877284 | 23874578 | ID=MS.gene92666 |
| chr3.1 | mRNA | 23874578 | 23877284 | 23874578 | ID=MS.gene92666.t1;Parent=MS.gene92666 |
| chr3.1 | exon | 23876895 | 23877284 | 23876895 | ID=MS.gene92666.t1.exon1;Parent=MS.gene92666.t1 |
| chr3.1 | CDS | 23876895 | 23877284 | 23876895 | ID=cds.MS.gene92666.t1;Parent=MS.gene92666.t1 |
| chr3.1 | exon | 23876132 | 23876467 | 23876132 | ID=MS.gene92666.t1.exon2;Parent=MS.gene92666.t1 |
| chr3.1 | CDS | 23876132 | 23876467 | 23876132 | ID=cds.MS.gene92666.t1;Parent=MS.gene92666.t1 |
| chr3.1 | exon | 23875274 | 23875474 | 23875274 | ID=MS.gene92666.t1.exon3;Parent=MS.gene92666.t1 |
| chr3.1 | CDS | 23875274 | 23875474 | 23875274 | ID=cds.MS.gene92666.t1;Parent=MS.gene92666.t1 |
| chr3.1 | exon | 23874578 | 23874637 | 23874578 | ID=MS.gene92666.t1.exon4;Parent=MS.gene92666.t1 |
| chr3.1 | CDS | 23874578 | 23874637 | 23874578 | ID=cds.MS.gene92666.t1;Parent=MS.gene92666.t1 |
| Gene Sequence |
| Protein sequence |
