Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93206.t1 | XP_013447053.1 | 93.4 | 425 | 22 | 2 | 1 | 422 | 9 | 430 | 2.10E-120 | 442.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93206.t1 | Q9SZL5 | 57.8 | 102 | 28 | 2 | 189 | 290 | 84 | 170 | 2.5e-21 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93206.t1 | A0A072U5E3 | 93.4 | 425 | 22 | 2 | 1 | 422 | 9 | 430 | 1.5e-120 | 442.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene93206 | 0.809249 | 2.08E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene93206 | 0.819803 | 9.58E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene93206 | 0.822011 | 2.98E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene93206 | 0.817614 | 3.01E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene93206 | 0.83198 | 1.23E-55 | -1.69E-46 |
| MS.gene050808 | MS.gene93206 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene051328 | MS.gene93206 | 0.809774 | 1.60E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene93206 | 0.802725 | 4.89E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene93206 | 0.834256 | 3.33E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene93206 | 0.83448 | 2.93E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene93206 | 0.821193 | 4.60E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene93206 | 0.8059 | 1.07E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene93206 | 0.845702 | 3.44E-59 | -1.69E-46 |
| MS.gene052879 | MS.gene93206 | 0.801576 | 8.44E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene93206 | 0.82121 | 4.56E-53 | -1.69E-46 |
| MS.gene053221 | MS.gene93206 | 0.801274 | 9.73E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene93206 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene053599 | MS.gene93206 | 0.822151 | 2.76E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene93206 | 0.8254 | 4.79E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene93206 | 0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene93206 | 0.816278 | 6.01E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene93206 | 0.823079 | 1.68E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene93206 | 0.841798 | 3.82E-58 | -1.69E-46 |
| MS.gene055580 | MS.gene93206 | -0.831163 | 1.95E-55 | -1.69E-46 |
| MS.gene055890 | MS.gene93206 | 0.805601 | 1.23E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene93206 | 0.828993 | 6.60E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene93206 | -0.822 | 2.99E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene93206 | 0.81309 | 3.05E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene93206 | 0.807244 | 5.56E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene93206 | 0.819096 | 1.39E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene93206 | 0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene060194 | MS.gene93206 | 0.810031 | 1.41E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene93206 | 0.846031 | 2.80E-59 | -1.69E-46 |
| MS.gene060619 | MS.gene93206 | 0.820838 | 5.55E-53 | -1.69E-46 |
| MS.gene061176 | MS.gene93206 | 0.821601 | 3.70E-53 | -1.69E-46 |
| MS.gene061177 | MS.gene93206 | 0.822121 | 2.81E-53 | -1.69E-46 |
| MS.gene061178 | MS.gene93206 | 0.821166 | 4.67E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCTAATTTATTTAAAA+TGG | 0.144535 | 4.2:+6271803 | None:intergenic |
| GCAAATTGGTCTTGGATTTC+AGG | 0.164548 | 4.2:-6272635 | MS.gene93206:CDS |
| AAATTTGCTTAGAATTTAAA+AGG | 0.213710 | 4.2:+6273037 | None:intergenic |
| TCCATTTGGGAGGCCATCTT+TGG | 0.260119 | 4.2:-6271845 | MS.gene93206:CDS |
| GACAATAAATCTTCGCAAAT+TGG | 0.296101 | 4.2:-6272649 | MS.gene93206:CDS |
| GGTTATCATTAAAGCTAAAA+TGG | 0.297998 | 4.2:+6272989 | None:intergenic |
| ATTCTCCGGCAGCAGCTTTA+CGG | 0.324844 | 4.2:+6272959 | None:intergenic |
| GGTGTTATCAAGACATTAAC+AGG | 0.334603 | 4.2:-6271935 | MS.gene93206:CDS |
| ACTTTCGTTGGCTTGGTAGA+TGG | 0.335096 | 4.2:-6271992 | MS.gene93206:CDS |
| GGATTTCAGGGTAGAAATAT+TGG | 0.336407 | 4.2:-6272622 | MS.gene93206:CDS |
| CCGACCTTGCTTCTTCCAAT+TGG | 0.341967 | 4.2:+6272425 | None:intergenic |
| AAATCTTCGCAAATTGATCT+TGG | 0.348578 | 4.2:-6272574 | MS.gene93206:CDS |
| TCCCAAATGGAGGGTGAAAA+TGG | 0.351854 | 4.2:+6271857 | None:intergenic |
| AATAGAAATGAGGAAGGTTT+TGG | 0.354510 | 4.2:-6272880 | MS.gene93206:CDS |
| CTACAAATGTAGCAGATTAC+AGG | 0.354953 | 4.2:-6272071 | MS.gene93206:CDS |
| GGAAGAAATGTTGATGAAAC+TGG | 0.365594 | 4.2:-6272691 | MS.gene93206:CDS |
| GGCCACCTCGATCATATTCT+TGG | 0.366307 | 4.2:+6272776 | None:intergenic |
| AAATCTTCGCAAATTGGTCT+TGG | 0.367816 | 4.2:-6272643 | MS.gene93206:CDS |
| GCGGGAAAAGGGAACGATTC+CGG | 0.377445 | 4.2:-6272233 | MS.gene93206:CDS |
| ACAAGGCTGATGATGCTATA+AGG | 0.384180 | 4.2:-6272165 | MS.gene93206:CDS |
| AGATCGTCGCAAATTGATCT+TGG | 0.387206 | 4.2:-6272721 | MS.gene93206:CDS |
| CAAATTGATCTTGGATTTCA+AGG | 0.391395 | 4.2:-6272712 | MS.gene93206:CDS |
| CCATTTGGGAGGCCATCTTT+GGG | 0.392463 | 4.2:-6271844 | MS.gene93206:CDS |
| TGCAAAGTAGGTTGATTACT+TGG | 0.392764 | 4.2:+6272802 | None:intergenic |
| TTCAAGAAGATGAAGGAAAC+TGG | 0.393436 | 4.2:-6272340 | MS.gene93206:CDS |
| CGTAGGGTTAATAAATTTGA+AGG | 0.400547 | 4.2:-6273069 | None:intergenic |
| AATGCAGTGGCTATGCTTGA+TGG | 0.408634 | 4.2:-6272307 | MS.gene93206:CDS |
| CGGAGGAATTGAATCAAACT+AGG | 0.410333 | 4.2:-6272843 | MS.gene93206:CDS |
| ATCAAGACATTAACAGGAAA+GGG | 0.416729 | 4.2:-6271929 | MS.gene93206:CDS |
| TCAAGCATAGCCACTGCATT+AGG | 0.418952 | 4.2:+6272310 | None:intergenic |
| TTTCGGTTTGATGCGGGAAA+AGG | 0.419906 | 4.2:-6272245 | MS.gene93206:CDS |
| GATAGAGATGGTGGTCAGTC+AGG | 0.420393 | 4.2:-6272523 | MS.gene93206:CDS |
| AGACTGTTGCGCTGGTTCAT+TGG | 0.421003 | 4.2:+6272387 | None:intergenic |
| GCAAATTGATCTTGGACCTC+AGG | 0.428080 | 4.2:-6272566 | MS.gene93206:CDS |
| TGGAGCTTTCTTCCCAAAGA+TGG | 0.431489 | 4.2:+6271832 | None:intergenic |
| GGCCGTCGTCTGAAATTTGA+TGG | 0.445178 | 4.2:-6272757 | MS.gene93206:CDS |
| TGTTGAAGCAAGCAGCCAAT+TGG | 0.445648 | 4.2:-6272440 | MS.gene93206:CDS |
| ACAGTGTAACTAAAAGCATT+TGG | 0.453156 | 4.2:+6272109 | None:intergenic |
| AAATTCATCGTCAGATTCTC+CGG | 0.459652 | 4.2:+6272945 | None:intergenic |
| CCCAAAGATGGCCTCCCAAA+TGG | 0.461784 | 4.2:+6271844 | None:intergenic |
| CAAATTGGTCTTGGATTTCA+GGG | 0.467586 | 4.2:-6272634 | MS.gene93206:CDS |
| TTTATTTAAAATGGCATCTG+TGG | 0.474744 | 4.2:+6271812 | None:intergenic |
| GGTAGAAATATTGGTAGAGA+TGG | 0.476528 | 4.2:-6272613 | MS.gene93206:CDS |
| TTCGGTTTGATGCGGGAAAA+GGG | 0.484486 | 4.2:-6272244 | MS.gene93206:CDS |
| TTTCTCGATAAGTATAAGCT+TGG | 0.496796 | 4.2:-6272493 | MS.gene93206:CDS |
| AGTTACACTGTTCTTATACA+AGG | 0.499632 | 4.2:-6272097 | MS.gene93206:CDS |
| AATGGAATTGAAGAAGCAAA+AGG | 0.499894 | 4.2:-6271956 | MS.gene93206:CDS |
| CTTGATGGTTTATGTAAAGA+TGG | 0.502179 | 4.2:-6272292 | MS.gene93206:CDS |
| TATTCTTGGGAATGCAAAGT+AGG | 0.503706 | 4.2:+6272790 | None:intergenic |
| GCCACCTCGATCATATTCTT+GGG | 0.507961 | 4.2:+6272777 | None:intergenic |
| GCAGTGTAAATGACAATCTC+CGG | 0.509766 | 4.2:+6272214 | None:intergenic |
| TGTGTAGAGATGTTAGAAGC+AGG | 0.515949 | 4.2:-6272034 | MS.gene93206:CDS |
| AGAAATATTGGTAGAGATGG+TGG | 0.517152 | 4.2:-6272610 | MS.gene93206:CDS |
| TTCAGGAAAATGCAGAGTAA+TGG | 0.518339 | 4.2:-6272139 | MS.gene93206:CDS |
| GGTAGAGATGGTGGTCGTCT+TGG | 0.520100 | 4.2:-6272601 | MS.gene93206:CDS |
| CTAAATGTGACGACTTTCGT+TGG | 0.535206 | 4.2:-6272004 | MS.gene93206:CDS |
| TATCAAGACATTAACAGGAA+AGG | 0.535590 | 4.2:-6271930 | MS.gene93206:CDS |
| TGTGACGACTTTCGTTGGCT+TGG | 0.537500 | 4.2:-6271999 | MS.gene93206:CDS |
| TGTCATTTACACTGCTGTAG+TGG | 0.538969 | 4.2:-6272206 | MS.gene93206:CDS |
| AAGTCGTCACATTTAGAGAA+TGG | 0.539449 | 4.2:+6272011 | None:intergenic |
| AATTTGCTTAGAATTTAAAA+GGG | 0.543930 | 4.2:+6273038 | None:intergenic |
| CATTTACACTGCTGTAGTGG+AGG | 0.556135 | 4.2:-6272203 | MS.gene93206:CDS |
| CATCTTCTTGAAAATCTCAT+CGG | 0.558879 | 4.2:+6272351 | None:intergenic |
| GGAGGAATTGAATCAAACTA+GGG | 0.561115 | 4.2:-6272842 | MS.gene93206:CDS |
| CAAATTGATCTTGGACCTCA+GGG | 0.562191 | 4.2:-6272565 | MS.gene93206:CDS |
| GTAGGGTTAATAAATTTGAA+GGG | 0.580948 | 4.2:-6273068 | None:intergenic |
| TTCCATCAAATTTCAGACGA+CGG | 0.581614 | 4.2:+6272755 | None:intergenic |
| GGTGGCCGTAAAGCTGCTGC+CGG | 0.589710 | 4.2:-6272964 | MS.gene93206:CDS |
| TGAGGCATAGACTGTTGCGC+TGG | 0.594878 | 4.2:+6272379 | None:intergenic |
| AAAATCTCATCGGCATCTTG+AGG | 0.595281 | 4.2:+6272361 | None:intergenic |
| AAAGATGGCCTCCCAAATGG+AGG | 0.600846 | 4.2:+6271847 | None:intergenic |
| TAATGGTGGCAATAGAAATG+AGG | 0.601499 | 4.2:-6272890 | MS.gene93206:CDS |
| GGTGGCAATAGAAATGAGGA+AGG | 0.603306 | 4.2:-6272886 | MS.gene93206:CDS |
| GATGAAACTGGTAGAGATGT+TGG | 0.605069 | 4.2:-6272679 | MS.gene93206:CDS |
| GGGATACACAAAGGCACACA+AGG | 0.605565 | 4.2:-6272182 | MS.gene93206:CDS |
| CCAATTGGAAGAAGCAAGGT+CGG | 0.609013 | 4.2:-6272425 | MS.gene93206:CDS |
| ATTTACACTGCTGTAGTGGA+GGG | 0.610371 | 4.2:-6272202 | MS.gene93206:CDS |
| AGCTTTAATGATAACCGTGG+TGG | 0.616814 | 4.2:-6272982 | MS.gene93206:CDS |
| TTTAGCTTTAATGATAACCG+TGG | 0.626517 | 4.2:-6272985 | MS.gene93206:CDS |
| TGGTCTTATACCTAATGCAG+TGG | 0.628103 | 4.2:-6272320 | MS.gene93206:CDS |
| CTGAAATTTGATGGAAACCG+TGG | 0.629200 | 4.2:-6272748 | MS.gene93206:CDS |
| TGGTGTTCAACAACGTTCGG+AGG | 0.633034 | 4.2:-6272860 | MS.gene93206:CDS |
| TGGCGCATAGTAATAAGCCA+TGG | 0.634452 | 4.2:+6273009 | None:intergenic |
| GCAGCCAATTGGAAGAAGCA+AGG | 0.638935 | 4.2:-6272429 | MS.gene93206:CDS |
| AAGATGGCCTCCCAAATGGA+GGG | 0.652997 | 4.2:+6271848 | None:intergenic |
| CAGCAGCTTTACGGCCACCA+CGG | 0.657023 | 4.2:+6272968 | None:intergenic |
| TTTGCGACGATCTATTGCCA+CGG | 0.672402 | 4.2:+6272731 | None:intergenic |
| CATTCCCAAGAATATGATCG+AGG | 0.673598 | 4.2:-6272781 | MS.gene93206:CDS |
| TCAGCAACATTTCTACCCTG+AGG | 0.676686 | 4.2:+6272550 | None:intergenic |
| GTTGCTGAAACTGATAGAGA+TGG | 0.677713 | 4.2:-6272535 | MS.gene93206:CDS |
| GCTGAAACTGATAGAGATGG+TGG | 0.693019 | 4.2:-6272532 | MS.gene93206:CDS |
| TCCCAAGAATATGATCGAGG+TGG | 0.704327 | 4.2:-6272778 | MS.gene93206:CDS |
| TGTAGTGGAGGGATACACAA+AGG | 0.712002 | 4.2:-6272191 | MS.gene93206:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGCTTAGAATTTAAA+AGG | + | chr4.2:6271847-6271866 | None:intergenic | 15.0% |
| !!! | AATTTGCTTAGAATTTAAAA+GGG | + | chr4.2:6271846-6271865 | None:intergenic | 15.0% |
| ! | GGTTATCATTAAAGCTAAAA+TGG | + | chr4.2:6271895-6271914 | None:intergenic | 25.0% |
| !!! | ATGAGTTTTAATGATAATGG+TGG | - | chr4.2:6271977-6271996 | MS.gene93206:CDS | 25.0% |
| !!! | GACATGAGTTTTAATGATAA+TGG | - | chr4.2:6271974-6271993 | MS.gene93206:CDS | 25.0% |
| AAATCTTCGCAAATTGATCT+TGG | - | chr4.2:6272307-6272326 | MS.gene93206:CDS | 30.0% | |
| AATGGAATTGAAGAAGCAAA+AGG | - | chr4.2:6272925-6272944 | MS.gene93206:CDS | 30.0% | |
| AGTTACACTGTTCTTATACA+AGG | - | chr4.2:6272784-6272803 | MS.gene93206:CDS | 30.0% | |
| ATCAAGACATTAACAGGAAA+GGG | - | chr4.2:6272952-6272971 | MS.gene93206:CDS | 30.0% | |
| CAAATTGATCTTGGATTTCA+AGG | - | chr4.2:6272169-6272188 | MS.gene93206:CDS | 30.0% | |
| CATCTTCTTGAAAATCTCAT+CGG | + | chr4.2:6272533-6272552 | None:intergenic | 30.0% | |
| GACAATAAATCTTCGCAAAT+TGG | - | chr4.2:6272232-6272251 | MS.gene93206:CDS | 30.0% | |
| TATCAAGACATTAACAGGAA+AGG | - | chr4.2:6272951-6272970 | MS.gene93206:CDS | 30.0% | |
| TTTCTCGATAAGTATAAGCT+TGG | - | chr4.2:6272388-6272407 | MS.gene93206:CDS | 30.0% | |
| ! | AATAGAAATGAGGAAGGTTT+TGG | - | chr4.2:6272001-6272020 | MS.gene93206:CDS | 30.0% |
| ! | ATGATGCTATAAGGATTTTC+AGG | - | chr4.2:6272725-6272744 | MS.gene93206:CDS | 30.0% |
| ! | CTTGATGGTTTATGTAAAGA+TGG | - | chr4.2:6272589-6272608 | MS.gene93206:CDS | 30.0% |
| ! | GATGGTTTTTGCAAAGAAAA+TGG | - | chr4.2:6272907-6272926 | MS.gene93206:CDS | 30.0% |
| ! | TTTTGATGAGAAAGCTGTTA+GGG | - | chr4.2:6272981-6273000 | MS.gene93206:CDS | 30.0% |
| !! | ACAGTGTAACTAAAAGCATT+TGG | + | chr4.2:6272775-6272794 | None:intergenic | 30.0% |
| !! | TGAGATTTTCAAGAAGATGA+AGG | - | chr4.2:6272534-6272553 | MS.gene93206:CDS | 30.0% |
| !! | TTTAGCTTTAATGATAACCG+TGG | - | chr4.2:6271896-6271915 | MS.gene93206:CDS | 30.0% |
| !!! | ACGATGAATTTTTTCGTCAA+CGG | - | chr4.2:6271948-6271967 | MS.gene93206:CDS | 30.0% |
| !!! | TTGGTTTTGATGATGAAGTA+GGG | - | chr4.2:6272407-6272426 | MS.gene93206:CDS | 30.0% |
| AAATTCATCGTCAGATTCTC+CGG | + | chr4.2:6271939-6271958 | None:intergenic | 35.0% | |
| AAGTCGTCACATTTAGAGAA+TGG | + | chr4.2:6272873-6272892 | None:intergenic | 35.0% | |
| AGAAATATTGGTAGAGATGG+TGG | - | chr4.2:6272271-6272290 | MS.gene93206:CDS | 35.0% | |
| CTACAAATGTAGCAGATTAC+AGG | - | chr4.2:6272810-6272829 | MS.gene93206:CDS | 35.0% | |
| GGAGGAATTGAATCAAACTA+GGG | - | chr4.2:6272039-6272058 | MS.gene93206:CDS | 35.0% | |
| GGATTTCAGGGTAGAAATAT+TGG | - | chr4.2:6272259-6272278 | MS.gene93206:CDS | 35.0% | |
| GGTAGAAATATTGGTAGAGA+TGG | - | chr4.2:6272268-6272287 | MS.gene93206:CDS | 35.0% | |
| TAATGGTGGCAATAGAAATG+AGG | - | chr4.2:6271991-6272010 | MS.gene93206:CDS | 35.0% | |
| TATTCTTGGGAATGCAAAGT+AGG | + | chr4.2:6272094-6272113 | None:intergenic | 35.0% | |
| TTCAAGAAGATGAAGGAAAC+TGG | - | chr4.2:6272541-6272560 | MS.gene93206:CDS | 35.0% | |
| TTCAGGAAAATGCAGAGTAA+TGG | - | chr4.2:6272742-6272761 | MS.gene93206:CDS | 35.0% | |
| TTCCATCAAATTTCAGACGA+CGG | + | chr4.2:6272129-6272148 | None:intergenic | 35.0% | |
| ! | AAATCTTCGCAAATTGGTCT+TGG | - | chr4.2:6272238-6272257 | MS.gene93206:CDS | 35.0% |
| ! | CTAAGCAAATTTTGTCTCCA+TGG | - | chr4.2:6271855-6271874 | MS.gene93206:CDS | 35.0% |
| ! | CTTTTGATGAGAAAGCTGTT+AGG | - | chr4.2:6272980-6272999 | MS.gene93206:CDS | 35.0% |
| ! | GGAAGAAATGTTGATGAAAC+TGG | - | chr4.2:6272190-6272209 | MS.gene93206:CDS | 35.0% |
| ! | GGTGTTATCAAGACATTAAC+AGG | - | chr4.2:6272946-6272965 | MS.gene93206:CDS | 35.0% |
| !! | CAAATTGGTCTTGGATTTCA+GGG | - | chr4.2:6272247-6272266 | MS.gene93206:CDS | 35.0% |
| !! | TGCAAAGTAGGTTGATTACT+TGG | + | chr4.2:6272082-6272101 | None:intergenic | 35.0% |
| !!! | AATCAAACTAGGGTTTTGAG+AGG | - | chr4.2:6272049-6272068 | MS.gene93206:CDS | 35.0% |
| !!! | CAAGAAGCTTTGAAGCTTTT+CGG | - | chr4.2:6272619-6272638 | MS.gene93206:CDS | 35.0% |
| !!! | CGATGAATTTTTTCGTCAAC+GGG | - | chr4.2:6271949-6271968 | MS.gene93206:CDS | 35.0% |
| !!! | CTTGGTTTTGATGATGAAGT+AGG | - | chr4.2:6272406-6272425 | MS.gene93206:CDS | 35.0% |
| !!! | GATGAATTTTTTCGTCAACG+GGG | - | chr4.2:6271950-6271969 | MS.gene93206:CDS | 35.0% |
| !!! | TTTTGGTGTTCAACAACGTT+CGG | - | chr4.2:6272018-6272037 | MS.gene93206:CDS | 35.0% |
| AAAATCTCATCGGCATCTTG+AGG | + | chr4.2:6272523-6272542 | None:intergenic | 40.0% | |
| AGATCGTCGCAAATTGATCT+TGG | - | chr4.2:6272160-6272179 | MS.gene93206:CDS | 40.0% | |
| CAAATTGATCTTGGACCTCA+GGG | - | chr4.2:6272316-6272335 | MS.gene93206:CDS | 40.0% | |
| CATTCCCAAGAATATGATCG+AGG | - | chr4.2:6272100-6272119 | MS.gene93206:CDS | 40.0% | |
| CGGAGGAATTGAATCAAACT+AGG | - | chr4.2:6272038-6272057 | MS.gene93206:CDS | 40.0% | |
| CTAAATGTGACGACTTTCGT+TGG | - | chr4.2:6272877-6272896 | MS.gene93206:CDS | 40.0% | |
| CTGAAATTTGATGGAAACCG+TGG | - | chr4.2:6272133-6272152 | MS.gene93206:CDS | 40.0% | |
| GATGAAACTGGTAGAGATGT+TGG | - | chr4.2:6272202-6272221 | MS.gene93206:CDS | 40.0% | |
| GCAGTGTAAATGACAATCTC+CGG | + | chr4.2:6272670-6272689 | None:intergenic | 40.0% | |
| GTTGCTGAAACTGATAGAGA+TGG | - | chr4.2:6272346-6272365 | MS.gene93206:CDS | 40.0% | |
| TGTGTAGAGATGTTAGAAGC+AGG | - | chr4.2:6272847-6272866 | MS.gene93206:CDS | 40.0% | |
| ! | ACAAGGCTGATGATGCTATA+AGG | - | chr4.2:6272716-6272735 | MS.gene93206:CDS | 40.0% |
| ! | ACCATTTTCACCCTCCATTT+GGG | - | chr4.2:6273023-6273042 | MS.gene93206:CDS | 40.0% |
| ! | AGCTTTAATGATAACCGTGG+TGG | - | chr4.2:6271899-6271918 | MS.gene93206:CDS | 40.0% |
| ! | ATTTACACTGCTGTAGTGGA+GGG | - | chr4.2:6272679-6272698 | MS.gene93206:CDS | 40.0% |
| ! | TGTCATTTACACTGCTGTAG+TGG | - | chr4.2:6272675-6272694 | MS.gene93206:CDS | 40.0% |
| !! | GAAAGCTGTTAGGGTGTTTT+TGG | - | chr4.2:6272990-6273009 | MS.gene93206:CDS | 40.0% |
| !! | GCAAATTGGTCTTGGATTTC+AGG | - | chr4.2:6272246-6272265 | MS.gene93206:CDS | 40.0% |
| !! | TGAAGCTTTTCGGTTTGATG+CGG | - | chr4.2:6272629-6272648 | MS.gene93206:CDS | 40.0% |
| !! | TGGTCTTATACCTAATGCAG+TGG | - | chr4.2:6272561-6272580 | MS.gene93206:CDS | 40.0% |
| AATGCAGTGGCTATGCTTGA+TGG | - | chr4.2:6272574-6272593 | MS.gene93206:CDS | 45.0% | |
| CATTTACACTGCTGTAGTGG+AGG | - | chr4.2:6272678-6272697 | MS.gene93206:CDS | 45.0% | |
| CCAATTGGAAGAAGCAAGGT+CGG | - | chr4.2:6272456-6272475 | MS.gene93206:CDS | 45.0% | |
| GCAAATTGATCTTGGACCTC+AGG | - | chr4.2:6272315-6272334 | MS.gene93206:CDS | 45.0% | |
| GCCACCTCGATCATATTCTT+GGG | + | chr4.2:6272107-6272126 | None:intergenic | 45.0% | |
| GCTGAAACTGATAGAGATGG+TGG | - | chr4.2:6272349-6272368 | MS.gene93206:CDS | 45.0% | |
| GGTGGCAATAGAAATGAGGA+AGG | - | chr4.2:6271995-6272014 | MS.gene93206:CDS | 45.0% | |
| TCAAGCATAGCCACTGCATT+AGG | + | chr4.2:6272574-6272593 | None:intergenic | 45.0% | |
| TCAGCAACATTTCTACCCTG+AGG | + | chr4.2:6272334-6272353 | None:intergenic | 45.0% | |
| TCCCAAATGGAGGGTGAAAA+TGG | + | chr4.2:6273027-6273046 | None:intergenic | 45.0% | |
| TCCCAAGAATATGATCGAGG+TGG | - | chr4.2:6272103-6272122 | MS.gene93206:CDS | 45.0% | |
| TGGAGCTTTCTTCCCAAAGA+TGG | + | chr4.2:6273052-6273071 | None:intergenic | 45.0% | |
| TGGCGCATAGTAATAAGCCA+TGG | + | chr4.2:6271875-6271894 | None:intergenic | 45.0% | |
| TGTTGAAGCAAGCAGCCAAT+TGG | - | chr4.2:6272441-6272460 | MS.gene93206:CDS | 45.0% | |
| TTTGCGACGATCTATTGCCA+CGG | + | chr4.2:6272153-6272172 | None:intergenic | 45.0% | |
| ! | ATTTTCACCCTCCATTTGGG+AGG | - | chr4.2:6273026-6273045 | MS.gene93206:CDS | 45.0% |
| ! | CACCATTTTCACCCTCCATT+TGG | - | chr4.2:6273022-6273041 | MS.gene93206:CDS | 45.0% |
| ! | TGTAGTGGAGGGATACACAA+AGG | - | chr4.2:6272690-6272709 | MS.gene93206:CDS | 45.0% |
| ! | TTCGGTTTGATGCGGGAAAA+GGG | - | chr4.2:6272637-6272656 | MS.gene93206:CDS | 45.0% |
| ! | TTTCGGTTTGATGCGGGAAA+AGG | - | chr4.2:6272636-6272655 | MS.gene93206:CDS | 45.0% |
| !! | ACTTTCGTTGGCTTGGTAGA+TGG | - | chr4.2:6272889-6272908 | MS.gene93206:CDS | 45.0% |
| !! | GAAGCTTTTCGGTTTGATGC+GGG | - | chr4.2:6272630-6272649 | MS.gene93206:CDS | 45.0% |
| !!! | GCTCCACAGATGCCATTTTA+AGG | - | chr4.2:6273066-6273085 | MS.gene93206:CDS | 45.0% |
| AAAGATGGCCTCCCAAATGG+AGG | + | chr4.2:6273037-6273056 | None:intergenic | 50.0% | |
| AAGATGGCCTCCCAAATGGA+GGG | + | chr4.2:6273036-6273055 | None:intergenic | 50.0% | |
| ATTCTCCGGCAGCAGCTTTA+CGG | + | chr4.2:6271925-6271944 | None:intergenic | 50.0% | |
| CCATTTGGGAGGCCATCTTT+GGG | - | chr4.2:6273037-6273056 | MS.gene93206:CDS | 50.0% | |
| CCGACCTTGCTTCTTCCAAT+TGG | + | chr4.2:6272459-6272478 | None:intergenic | 50.0% | |
| GCAGCCAATTGGAAGAAGCA+AGG | - | chr4.2:6272452-6272471 | MS.gene93206:CDS | 50.0% | |
| GGCCACCTCGATCATATTCT+TGG | + | chr4.2:6272108-6272127 | None:intergenic | 50.0% | |
| TCCATTTGGGAGGCCATCTT+TGG | - | chr4.2:6273036-6273055 | MS.gene93206:CDS | 50.0% | |
| TGGTGTTCAACAACGTTCGG+AGG | - | chr4.2:6272021-6272040 | MS.gene93206:CDS | 50.0% | |
| ! | GATAGAGATGGTGGTCAGTC+AGG | - | chr4.2:6272358-6272377 | MS.gene93206:CDS | 50.0% |
| ! | GGCCGTCGTCTGAAATTTGA+TGG | - | chr4.2:6272124-6272143 | MS.gene93206:CDS | 50.0% |
| ! | GGGATACACAAAGGCACACA+AGG | - | chr4.2:6272699-6272718 | MS.gene93206:CDS | 50.0% |
| ! | TGTGACGACTTTCGTTGGCT+TGG | - | chr4.2:6272882-6272901 | MS.gene93206:CDS | 50.0% |
| !! | AGACTGTTGCGCTGGTTCAT+TGG | + | chr4.2:6272497-6272516 | None:intergenic | 50.0% |
| CCCAAAGATGGCCTCCCAAA+TGG | + | chr4.2:6273040-6273059 | None:intergenic | 55.0% | |
| GCGGGAAAAGGGAACGATTC+CGG | - | chr4.2:6272648-6272667 | MS.gene93206:CDS | 55.0% | |
| TGAGGCATAGACTGTTGCGC+TGG | + | chr4.2:6272505-6272524 | None:intergenic | 55.0% | |
| ! | GGTAGAGATGGTGGTCGTCT+TGG | - | chr4.2:6272280-6272299 | MS.gene93206:CDS | 55.0% |
| CAGCAGCTTTACGGCCACCA+CGG | + | chr4.2:6271916-6271935 | None:intergenic | 60.0% | |
| GGTGGCCGTAAAGCTGCTGC+CGG | - | chr4.2:6271917-6271936 | MS.gene93206:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6271817 | 6273086 | 6271817 | ID=MS.gene93206 |
| chr4.2 | mRNA | 6271817 | 6273086 | 6271817 | ID=MS.gene93206.t1;Parent=MS.gene93206 |
| chr4.2 | exon | 6271817 | 6273086 | 6271817 | ID=MS.gene93206.t1.exon1;Parent=MS.gene93206.t1 |
| chr4.2 | CDS | 6271817 | 6273086 | 6271817 | ID=cds.MS.gene93206.t1;Parent=MS.gene93206.t1 |
| Gene Sequence |
| Protein sequence |
