AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93739

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93739.t1 MTR_8g107510 96.496 799 11 1 1 799 1 782 0.0 1575
MS.gene93739.t1 MTR_6g007697 45.786 795 386 11 13 796 13 773 0.0 707
MS.gene93739.t1 MTR_5g034500 45.125 800 396 12 10 796 10 779 0.0 682
MS.gene93739.t1 MTR_6g033165 45.386 791 398 10 14 796 52 816 0.0 680
MS.gene93739.t1 MTR_3g094090 42.929 799 422 9 12 796 13 791 0.0 659
MS.gene93739.t1 MTR_5g071860 41.944 782 388 13 23 796 28 751 0.0 605
MS.gene93739.t1 MTR_8g099090 40.127 785 435 10 22 795 28 788 0.0 577
MS.gene93739.t1 MTR_5g071630 40.996 783 380 18 23 796 13 722 0.0 563
MS.gene93739.t1 MTR_5g071827 41.331 721 360 12 81 796 1 663 0.0 549
MS.gene93739.t1 MTR_2g438150 38.065 775 439 9 23 796 52 786 3.55e-174 521
MS.gene93739.t1 MTR_2g438150 38.089 785 443 11 13 794 40 784 3.41e-173 521
MS.gene93739.t1 MTR_3g094090 42.620 603 333 5 205 796 6 606 1.69e-172 510
MS.gene93739.t1 MTR_4g094660 38.432 778 430 13 23 796 52 784 6.77e-171 513
MS.gene93739.t1 MTR_8g063840 35.132 797 471 9 8 795 77 836 9.72e-164 496
MS.gene93739.t1 MTR_4g099260 34.543 799 480 11 8 799 53 815 1.35e-163 494
MS.gene93739.t1 MTR_8g022130 34.772 788 436 12 10 795 51 762 5.66e-162 489
MS.gene93739.t1 MTR_7g108480 34.962 798 441 14 1 795 47 769 2.72e-158 479
MS.gene93739.t1 MTR_2g438160 42.440 582 315 4 29 610 58 619 7.22e-155 466
MS.gene93739.t1 MTR_2g008820 34.247 803 472 11 7 795 85 845 7.34e-146 450
MS.gene93739.t1 MTR_5g070670 33.127 806 477 12 7 795 85 845 1.90e-138 431
MS.gene93739.t1 MTR_8g063900 35.196 662 396 10 2 653 44 682 4.85e-138 426
MS.gene93739.t1 MTR_8g088200 31.579 798 496 12 10 799 27 782 4.00e-137 425
MS.gene93739.t1 MTR_4g094660 37.246 639 359 11 159 796 1 598 7.21e-132 405
MS.gene93739.t1 MTR_5g034590 38.994 318 141 4 435 752 86 350 2.39e-70 236
MS.gene93739.t1 MTR_8g022160 37.725 167 100 1 17 183 57 219 1.64e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93739.t1 AT1G70300 44.085 803 407 13 10 799 9 782 0.0 687
MS.gene93739.t1 AT2G40540 43.842 812 403 12 8 796 10 791 0.0 677
MS.gene93739.t1 AT2G40540 43.842 812 403 12 8 796 10 791 0.0 677
MS.gene93739.t1 AT2G40540 43.842 812 403 12 8 796 10 791 0.0 677
MS.gene93739.t1 AT2G40540 43.842 812 403 12 8 796 10 791 0.0 677
MS.gene93739.t1 AT2G40540 43.842 812 403 12 8 796 10 791 0.0 677
MS.gene93739.t1 AT5G14880 43.680 799 402 11 13 796 13 778 0.0 656
MS.gene93739.t1 AT3G02050 46.038 795 382 12 18 796 23 786 0.0 654
MS.gene93739.t1 AT4G23640 39.447 796 444 11 11 795 3 771 0.0 568
MS.gene93739.t1 AT2G30070 39.125 777 375 9 23 796 28 709 0.0 565
MS.gene93739.t1 AT1G31120 36.516 775 439 9 29 796 65 793 1.22e-168 507
MS.gene93739.t1 AT4G13420 36.061 782 442 10 17 795 55 781 5.64e-168 505
MS.gene93739.t1 AT1G60160 35.264 794 460 10 9 795 77 823 7.24e-164 496
MS.gene93739.t1 AT2G35060 36.352 773 438 13 29 796 66 789 3.00e-162 491
MS.gene93739.t1 AT2G35060 36.352 773 438 13 29 796 66 789 3.00e-162 491
MS.gene93739.t1 AT2G35060 36.352 773 438 13 29 796 66 789 3.00e-162 491
MS.gene93739.t1 AT2G35060 36.305 774 438 14 29 796 66 790 1.98e-160 486
MS.gene93739.t1 AT4G19960 37.387 773 453 9 25 796 62 804 4.64e-156 475
MS.gene93739.t1 AT2G30070 37.042 683 335 8 114 796 2 589 1.45e-154 464
MS.gene93739.t1 AT4G19960 36.629 789 453 10 25 796 62 820 5.49e-152 465
MS.gene93739.t1 AT4G19960 36.909 783 469 11 25 796 62 830 1.24e-151 464
MS.gene93739.t1 AT4G33530 34.271 782 477 10 18 795 103 851 3.36e-140 435
MS.gene93739.t1 AT5G09400 32.997 794 491 8 10 795 94 854 2.10e-136 426
MS.gene93739.t1 AT4G19960 37.265 585 355 6 213 796 10 583 6.56e-124 384
MS.gene93739.t1 AT4G33530 34.215 643 387 9 156 795 14 623 3.14e-115 363

Find 160 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGTCATTTCAAATTAT+TGG 0.097572 4.2:-109072 MS.gene93739:CDS
TAATACCTTGATTGATTTCT+TGG 0.133225 4.2:+107361 None:intergenic
CAAATTATTGGAATAGTTTA+TGG 0.171289 4.2:-109060 MS.gene93739:CDS
TCACTATTTGATATTGTTCT+TGG 0.177064 4.2:-108611 MS.gene93739:CDS
ATGAGATACCTTTCACTTTC+GGG 0.185728 4.2:+105967 None:intergenic
CCCTGCGGCACACATAAAAT+TGG 0.218769 4.2:-107708 MS.gene93739:CDS
TGCTAGTAGTAGTCCTAAAA+TGG 0.222069 4.2:-105575 MS.gene93739:CDS
CCCACCTGCTGCGCATAAAA+TGG 0.247149 4.2:+107518 None:intergenic
CTCAATGGCCCTTCGTGCTT+TGG 0.254731 4.2:+108648 None:intergenic
TTGCTTGATCTATCCGCTTC+TGG 0.258921 4.2:-107232 MS.gene93739:CDS
GATATTGTGATAATAATATA+AGG 0.265580 4.2:-105891 MS.gene93739:CDS
ATATTGTTCTTGGCCCTCTT+TGG 0.271760 4.2:-108601 MS.gene93739:CDS
AAAAGCCAAACAGCAATAAT+TGG 0.277240 4.2:+107672 None:intergenic
GCATGCTTTCTGTTATGTTT+TGG 0.280359 4.2:-106330 MS.gene93739:CDS
CACTAATCATTGCTTTGTAT+TGG 0.284123 4.2:-106374 MS.gene93739:CDS
TTGGTTCCTGTATGACAATT+GGG 0.284904 4.2:-108582 MS.gene93739:CDS
GTCATGCTTTCATGGCATTA+TGG 0.288725 4.2:-106216 MS.gene93739:CDS
GTCAAAAGATGGAGATTATT+AGG 0.292066 4.2:-107546 MS.gene93739:CDS
TTTGGTTCCTGTATGACAAT+TGG 0.295249 4.2:-108583 MS.gene93739:CDS
ACTAATCATTGCTTTGTATT+GGG 0.300084 4.2:-106373 MS.gene93739:CDS
ATTTCAAGGGTAGCTGGAAT+TGG 0.306668 4.2:-106114 MS.gene93739:CDS
CATTGTCCCGAATACATATA+AGG 0.308500 4.2:+109020 None:intergenic
ACGAATTTGAACAGGTATAG+TGG 0.308769 4.2:+107582 None:intergenic
ATGTGACTGTCCCAAGAAAT+AGG 0.320049 4.2:+105495 None:intergenic
TTGGTATCTAGTTGTCCTTT+TGG 0.329914 4.2:-106253 MS.gene93739:CDS
ACTGCTCCCTTATATGTATT+CGG 0.332081 4.2:-109027 MS.gene93739:CDS
CGCAGGGCTGCAGCACGAAC+AGG 0.333248 4.2:+107724 None:intergenic
TCCTGCTGCTCATGACTCTA+AGG 0.336816 4.2:-109235 MS.gene93739:intron
GAGTGGTAGTGCCTATTTCT+TGG 0.340865 4.2:-105506 MS.gene93739:CDS
AGTATTGTCCCTACTTTCTT+CGG 0.348739 4.2:-107012 MS.gene93739:CDS
TATGAGATACCTTTCACTTT+CGG 0.349566 4.2:+105966 None:intergenic
CTTGGGACAGTCACATTTAG+TGG 0.358649 4.2:-105488 MS.gene93739:CDS
TATCGTTGCATTGTGAGATA+TGG 0.370461 4.2:-105913 MS.gene93739:CDS
GGGACAGAGGCAATGTTTGC+AGG 0.371593 4.2:-107398 MS.gene93739:CDS
TTGCTCCAATTATTGCTGTT+TGG 0.374670 4.2:-107677 MS.gene93739:CDS
ATCCCAGAAGAAAATATTAT+AGG 0.374775 4.2:+107629 None:intergenic
AGCTGGCTGTTATAGTTGCT+TGG 0.383170 4.2:+106979 None:intergenic
GTGCTCAAAGCCGATGATAA+AGG 0.386986 4.2:-108898 MS.gene93739:CDS
CCAGTGTTATCAGCTTCATA+TGG 0.390257 4.2:-108444 MS.gene93739:intron
CGATGACAGTCATGCTTTCA+TGG 0.391628 4.2:-106224 MS.gene93739:CDS
CAATACTATGAATACATGTT+TGG 0.391978 4.2:+107028 None:intergenic
GAGAAAATCATTGGTGCTAT+AGG 0.397323 4.2:-105850 MS.gene93739:CDS
TTTCGTTTCTTTGAAAAGAA+TGG 0.402669 4.2:-105421 MS.gene93739:CDS
TTCAGAGACATGGTGAAGAT+TGG 0.404906 4.2:-106813 MS.gene93739:CDS
TGACATTGAATCAATGGTTT+CGG 0.408757 4.2:-105800 MS.gene93739:CDS
TCTGCGTGTGTTGTATTGAT+TGG 0.412990 4.2:-107747 MS.gene93739:CDS
CTGCTCCCTTATATGTATTC+GGG 0.427071 4.2:-109026 MS.gene93739:CDS
GATGAGTGACATTGAATCAA+TGG 0.427788 4.2:-105806 MS.gene93739:CDS
TTTCAAGGGTAGCTGGAATT+GGG 0.431440 4.2:-106113 MS.gene93739:CDS
GGTGATATGCTATGCGGGTC+AGG 0.433632 4.2:-107211 MS.gene93739:CDS
TGCTAGACATTGGTTAATGA+TGG 0.434347 4.2:+106953 None:intergenic
ATAGATGTCAGTCCAGGCCT+TGG 0.434506 4.2:-106138 MS.gene93739:CDS
AATGTCACTCATCTGTTCAA+TGG 0.442300 4.2:+105816 None:intergenic
TTTACATCTCCGATGTCAAC+TGG 0.442324 4.2:-106872 MS.gene93739:CDS
TCTCAAGAGATTCTTAATCA+TGG 0.442855 4.2:-105446 MS.gene93739:CDS
AGTGGTAGTGCCTATTTCTT+GGG 0.442863 4.2:-105505 MS.gene93739:CDS
TGCAATTTCACAAGGGAGCT+TGG 0.443081 4.2:-106272 MS.gene93739:CDS
TCACTTTCCTCAATTACTGC+TGG 0.445037 4.2:+105664 None:intergenic
GTCCAGGCCTTGGGATTTCA+AGG 0.446718 4.2:-106128 MS.gene93739:CDS
ATCTGTGAGGAAGGAGCTGT+TGG 0.455362 4.2:-105548 MS.gene93739:CDS
TATTCCTCACGAATTTGAAC+AGG 0.458746 4.2:+107574 None:intergenic
CATGTTTCATCATTCATCAA+AGG 0.462722 4.2:+105724 None:intergenic
ATGTTTCATCATTCATCAAA+GGG 0.464890 4.2:+105725 None:intergenic
GTCCTCACTCCAGCACTCTC+AGG 0.466444 4.2:-108553 MS.gene93739:intron
ATAAAATGTGAAAAGAAAGC+TGG 0.467438 4.2:+106060 None:intergenic
TCCCTACTTTCTTCGGCTGT+CGG 0.468003 4.2:-107005 MS.gene93739:CDS
AGGTATCTCATAGGAAGGAT+TGG 0.477155 4.2:-105955 MS.gene93739:CDS
ACCCTTGAAATCCCAAGGCC+TGG 0.485489 4.2:+106126 None:intergenic
GAGGCAATGTTTGCAGGCCT+AGG 0.489080 4.2:-107392 MS.gene93739:CDS
TGACATCGGAGATGTAAATC+TGG 0.489377 4.2:+106877 None:intergenic
ATTTCATCAAGTGTTGATCA+TGG 0.490098 4.2:-106022 MS.gene93739:CDS
GAAAGTGAAAGGTATCTCAT+AGG 0.491062 4.2:-105964 MS.gene93739:CDS
ACAGGACTTGTGTTTCTCAA+TGG 0.493275 4.2:+108633 None:intergenic
CTTGGGATTTCAAGGGTAGC+TGG 0.493441 4.2:-106120 MS.gene93739:CDS
ATATTGTGATAATAATATAA+GGG 0.493754 4.2:-105890 MS.gene93739:CDS
CGTACCCTCTCCTTTATCAT+CGG 0.494667 4.2:+108888 None:intergenic
TAGATGTCAGTCCAGGCCTT+GGG 0.495201 4.2:-106137 MS.gene93739:CDS
CACTTTCCTCAATTACTGCT+GGG 0.497373 4.2:+105665 None:intergenic
CGAATTTGAACAGGTATAGT+GGG 0.498758 4.2:+107583 None:intergenic
CATGCTGCTCTTGTAGAAGT+TGG 0.499402 4.2:-105367 MS.gene93739:CDS
CCTGCGGCACACATAAAATT+GGG 0.499524 4.2:-107707 MS.gene93739:CDS
GGTATCTCATAGGAAGGATT+GGG 0.500620 4.2:-105954 MS.gene93739:CDS
ATCAACACTTGATGAAATGC+AGG 0.501496 4.2:+106027 None:intergenic
TCAGAGATCCTTGTCAGACT+TGG 0.504330 4.2:-108418 MS.gene93739:CDS
ATTGTCCCGAATACATATAA+GGG 0.505493 4.2:+109021 None:intergenic
ACCTTAGAGTCATGAGCAGC+AGG 0.505650 4.2:+109234 None:intergenic
GGAAAGTGATCATACATTGT+TGG 0.507113 4.2:-105650 MS.gene93739:CDS
TAAAATGTGAAAAGAAAGCT+GGG 0.508339 4.2:+106061 None:intergenic
TGCGGCCCCAATTGTCATAC+AGG 0.516547 4.2:+108576 None:intergenic
GGAATATTGATGTCAAAAGA+TGG 0.518956 4.2:-107557 MS.gene93739:CDS
AACAATTTAGTGCTAGACAT+TGG 0.524283 4.2:+106943 None:intergenic
ACTATGAATACATGTTTGGA+TGG 0.524692 4.2:+107032 None:intergenic
ATCGGCTTTGAGCACTATGA+TGG 0.526999 4.2:+108906 None:intergenic
TTCAGTCTAGCTGTGACGGT+TGG 0.528040 4.2:-106837 MS.gene93739:CDS
GCTAGTAGTAGTCCTAAAAT+GGG 0.535308 4.2:-105574 MS.gene93739:CDS
TTTCATCGTCACAACATACT+CGG 0.535954 4.2:-108156 MS.gene93739:CDS
ACAACACACGCAGAGGGAAC+AGG 0.537656 4.2:+107756 None:intergenic
TTGTGTAGAAATGCAAAAGT+TGG 0.539250 4.2:-108754 MS.gene93739:CDS
GATTAGCCCAGCAGTAATTG+AGG 0.542723 4.2:-105671 MS.gene93739:CDS
AAAACAAGGTGTCAACTGAA+TGG 0.543678 4.2:-106164 MS.gene93739:CDS
ATTTACACAGACATAGTAGC+AGG 0.543683 4.2:-106087 MS.gene93739:CDS
CTGTCATCGACACAACCAAA+AGG 0.544019 4.2:+106238 None:intergenic
GAACAATATCAAATAGTGAC+AGG 0.547114 4.2:+108615 None:intergenic
TCAGTATTAATCTTAGAAGA+AGG 0.549138 4.2:+108673 None:intergenic
CTTCTGGTGATATGCTATGC+GGG 0.549853 4.2:-107216 MS.gene93739:CDS
TCCGACAGCCGAAGAAAGTA+GGG 0.550295 4.2:+107004 None:intergenic
TTCCGACAGCCGAAGAAAGT+AGG 0.550320 4.2:+107003 None:intergenic
CTGGACCAACTTACGTGGTA+CGG 0.552439 4.2:+107134 None:intergenic
TGGCTAATAGATGTCAGTCC+AGG 0.553837 4.2:-106144 MS.gene93739:CDS
CTTTCGGGAACATGAGGCAC+CGG 0.556705 4.2:+105982 None:intergenic
CTAATTGATGCAAGGGAGAG+TGG 0.560075 4.2:-105523 MS.gene93739:CDS
TACTGATTCCAAAGCACGAA+GGG 0.560127 4.2:-108656 MS.gene93739:CDS
GAGTTCATAAACAACTTCCT+CGG 0.565549 4.2:+108978 None:intergenic
TGGTTCCTGTATGACAATTG+GGG 0.565614 4.2:-108581 MS.gene93739:CDS
TTGGTTAATGATGGAGAAGC+TGG 0.565734 4.2:+106962 None:intergenic
CTTTCACTTTCGGGAACATG+AGG 0.566786 4.2:+105976 None:intergenic
CTCATGTTCCCGAAAGTGAA+AGG 0.575661 4.2:-105975 MS.gene93739:CDS
TGTATACCACCTGAGAGTGC+TGG 0.576733 4.2:+108544 None:intergenic
TGGTTCTATCACAAGGGAGT+AGG 0.578415 4.2:+108731 None:intergenic
ATAGTGGGAAATTCATCAGA+TGG 0.578894 4.2:-105760 MS.gene93739:CDS
GTTGGAACTAATTGATGCAA+GGG 0.584636 4.2:-105530 MS.gene93739:CDS
GTGAAAGGTATCTCATAGGA+AGG 0.585522 4.2:-105960 MS.gene93739:CDS
TGAGTTTGATTTGCAAAACA+AGG 0.593927 4.2:-106178 MS.gene93739:CDS
TTCATCGTCACAACATACTC+GGG 0.594104 4.2:-108155 MS.gene93739:CDS
AATGGGAGAATCTGTGAGGA+AGG 0.595349 4.2:-105557 MS.gene93739:CDS
TGTCATACAGGAACCAAAGA+GGG 0.597184 4.2:+108588 None:intergenic
CAGCTACCCTTGAAATCCCA+AGG 0.598668 4.2:+106121 None:intergenic
GGTCTCATTCAAGTCAATGC+CGG 0.599286 4.2:-106001 MS.gene93739:CDS
TGTTGGAACTAATTGATGCA+AGG 0.600387 4.2:-105531 MS.gene93739:CDS
GTGTATGCTGCAATTTCACA+AGG 0.605542 4.2:-106280 MS.gene93739:CDS
GCAGGTTTGGCTATAATATG+TGG 0.608232 4.2:-106423 MS.gene93739:intron
TGATAATAATATAAGGGACA+CGG 0.608313 4.2:-105884 MS.gene93739:CDS
TCACATTTAGTGGTTCGTGA+TGG 0.611078 4.2:-105478 MS.gene93739:CDS
GATAATAATATAAGGGACAC+GGG 0.611099 4.2:-105883 MS.gene93739:CDS
TCATCAGTGGTTCTATCACA+AGG 0.619268 4.2:+108724 None:intergenic
GCATAGCATATCACCAGAAG+CGG 0.619528 4.2:+107219 None:intergenic
AGCGCAAGATCTTGAATCCG+AGG 0.620300 4.2:-108995 MS.gene93739:CDS
TCCAGGCCTTGGGATTTCAA+GGG 0.627014 4.2:-106127 MS.gene93739:CDS
ATCAATACAACACACGCAGA+GGG 0.630541 4.2:+107750 None:intergenic
CTGTTCGTGCTGCAGCCCTG+CGG 0.631273 4.2:-107723 MS.gene93739:CDS
TTGTGATAGAACCACTGATG+AGG 0.635745 4.2:-108722 MS.gene93739:CDS
GACGGTTGGTTTCAGAGACA+TGG 0.641262 4.2:-106823 MS.gene93739:CDS
ACTTCTACAAGAGCAGCATG+AGG 0.642823 4.2:+105370 None:intergenic
CATCAATAACCAGTTGACAT+CGG 0.643303 4.2:+106863 None:intergenic
CTTCTACAAGAGCAGCATGA+GGG 0.644345 4.2:+105371 None:intergenic
CACCTGAGAGTGCTGGAGTG+AGG 0.647966 4.2:+108551 None:intergenic
AATCAATACAACACACGCAG+AGG 0.649984 4.2:+107749 None:intergenic
CAAAGCCGATGATAAAGGAG+AGG 0.656962 4.2:-108893 MS.gene93739:CDS
GCTTCTGGTGATATGCTATG+CGG 0.658421 4.2:-107217 MS.gene93739:CDS
TTGTCATACAGGAACCAAAG+AGG 0.661921 4.2:+108587 None:intergenic
TAACTGTGCCAAGTCTGACA+AGG 0.665484 4.2:+108410 None:intergenic
AAAGCCGATGATAAAGGAGA+GGG 0.682612 4.2:-108892 MS.gene93739:intron
TTAGGACTACTACTAGCAGG+AGG 0.682982 4.2:+105580 None:intergenic
TATACCTGTTCAAATTCGTG+AGG 0.684600 4.2:-107578 MS.gene93739:CDS
CATCAGTGGTTCTATCACAA+GGG 0.691255 4.2:+108725 None:intergenic
GAATTTGAACAGGTATAGTG+GGG 0.699929 4.2:+107584 None:intergenic
CTAAAATGGGAGAATCTGTG+AGG 0.712297 4.2:-105561 MS.gene93739:CDS
ATACTGATTCCAAAGCACGA+AGG 0.716209 4.2:-108657 MS.gene93739:CDS
GAGTGCTGGAGTGAGGACTG+CGG 0.718425 4.2:+108558 None:intergenic
TGTATGCTGCAATTTCACAA+GGG 0.732397 4.2:-106279 MS.gene93739:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGTGATAATAATATAA+GGG - chr4.2:108710-108729 MS.gene93739:CDS 10.0%
!!! TTTATTCTGAAAAAATAATA+GGG + chr4.2:105490-105509 None:intergenic 10.0%
!!! TTTTATTCTGAAAAAATAAT+AGG + chr4.2:105491-105510 None:intergenic 10.0%
!! GATATTGTGATAATAATATA+AGG - chr4.2:108709-108728 MS.gene93739:CDS 15.0%
!! GTAGCTAAAATAATAAATAT+AGG + chr4.2:106248-106267 None:intergenic 15.0%
!!! ATTGTTAATTAGAATTGTTT+TGG - chr4.2:107148-107167 MS.gene93739:CDS 15.0%
!!! CGATATATTTTATAATCTTT+TGG + chr4.2:108672-108691 None:intergenic 15.0%
!!! TATTTTTTCAGAATAAAAGA+TGG - chr4.2:105493-105512 MS.gene93739:CDS 15.0%
!! AAGAAAAGCAGTAAATATAT+TGG + chr4.2:106311-106330 None:intergenic 20.0%
!! AATTCTAATTAACAATCACT+TGG + chr4.2:107144-107163 None:intergenic 20.0%
!! CAAATTATTGGAATAGTTTA+TGG - chr4.2:105540-105559 MS.gene93739:CDS 20.0%
!! CTTGTGATTTGATTAAATTA+AGG - chr4.2:108057-108076 MS.gene93739:intron 20.0%
!! TGATTTGATTAAATTAAGGA+TGG - chr4.2:108061-108080 MS.gene93739:intron 20.0%
!! TTAAATTAAGGATGGTTATA+TGG - chr4.2:108069-108088 MS.gene93739:intron 20.0%
!! TTAATTAAGTTCACAATTTG+TGG - chr4.2:108155-108174 MS.gene93739:CDS 20.0%
!! TTCAATGTAGTGAATATAAT+TGG + chr4.2:105788-105807 None:intergenic 20.0%
!!! AAAAGTTGGTAAATTAAACA+GGG - chr4.2:107959-107978 MS.gene93739:intron 20.0%
!!! ATTTATTATTTTAGCTACCA+AGG - chr4.2:106250-106269 MS.gene93739:CDS 20.0%
!!! TTCTAGTTTAATGCAAAAAT+GGG + chr4.2:107897-107916 None:intergenic 20.0%
!!! TTTCTAGTTTAATGCAAAAA+TGG + chr4.2:107898-107917 None:intergenic 20.0%
!!! TTTTAGTTTTTGAAATCTGA+TGG - chr4.2:106699-106718 MS.gene93739:intron 20.0%
! AATCAATTTACTAGAACTAC+AGG + chr4.2:107280-107299 None:intergenic 25.0%
! ACCAAGAGAAATGAAAAAAA+TGG + chr4.2:107829-107848 None:intergenic 25.0%
! ACTAATCATTGCTTTGTATT+GGG - chr4.2:108227-108246 MS.gene93739:intron 25.0%
! AGAAGAAAAAATGATGATAG+TGG - chr4.2:108824-108843 MS.gene93739:intron 25.0%
! ATAAAATGTGAAAAGAAAGC+TGG + chr4.2:108543-108562 None:intergenic 25.0%
! ATCCCAGAAGAAAATATTAT+AGG + chr4.2:106974-106993 None:intergenic 25.0%
! ATGTTTCATCATTCATCAAA+GGG + chr4.2:108878-108897 None:intergenic 25.0%
! CAATACTATGAATACATGTT+TGG + chr4.2:107575-107594 None:intergenic 25.0%
! GAAGAAAAAATGATGATAGT+GGG - chr4.2:108825-108844 MS.gene93739:intron 25.0%
! GCAACAAAAGAAAAAAAGTA+CGG - chr4.2:108988-109007 MS.gene93739:CDS 25.0%
! GTCTTAAGAAAATGAAAAGT+TGG - chr4.2:107945-107964 MS.gene93739:intron 25.0%
! TAAAATGTGAAAAGAAAGCT+GGG + chr4.2:108542-108561 None:intergenic 25.0%
! TCACTATTTGATATTGTTCT+TGG - chr4.2:105989-106008 MS.gene93739:CDS 25.0%
! TCAGTATTAATCTTAGAAGA+AGG + chr4.2:105930-105949 None:intergenic 25.0%
! TGATAATAATATAAGGGACA+CGG - chr4.2:108716-108735 MS.gene93739:CDS 25.0%
! TTGAGTCCTTAATTTATGAA+GGG - chr4.2:107920-107939 MS.gene93739:intron 25.0%
! TTTGAGTCCTTAATTTATGA+AGG - chr4.2:107919-107938 MS.gene93739:intron 25.0%
!! AGCCTATAATATTTTCTTCT+GGG - chr4.2:106969-106988 MS.gene93739:CDS 25.0%
!! CTACATTGAAAATATTTTCC+AGG - chr4.2:105798-105817 MS.gene93739:CDS 25.0%
!! CTCTTGTCATTTCAAATTAT+TGG - chr4.2:105528-105547 MS.gene93739:CDS 25.0%
!! GCAGAAAGTATATAAATCTT+AGG + chr4.2:106129-106148 None:intergenic 25.0%
!! TAATACCTTGATTGATTTCT+TGG + chr4.2:107242-107261 None:intergenic 25.0%
!! TGATTGATTTCTTGGAAAAA+TGG + chr4.2:107234-107253 None:intergenic 25.0%
!! TTTCGTTTCTTTGAAAAGAA+TGG - chr4.2:109179-109198 MS.gene93739:intron 25.0%
!! TTTTTCCAAGAAATCAATCA+AGG - chr4.2:107234-107253 MS.gene93739:CDS 25.0%
!! TTTTTGTAGAACATTTGAGA+CGG + chr4.2:106474-106493 None:intergenic 25.0%
!!! AAAAGGCATCTTAGAAATAA+AGG + chr4.2:107502-107521 None:intergenic 25.0%
!!! AAAGGCATCTTAGAAATAAA+GGG + chr4.2:107501-107520 None:intergenic 25.0%
!!! GAAAAGTTGGTAAATTAAAC+AGG - chr4.2:107958-107977 MS.gene93739:intron 25.0%
!!! GTTAATTAGAATTGTTTTGG+AGG - chr4.2:107151-107170 MS.gene93739:CDS 25.0%
AAAAATATGCAACCTCAACA+AGG + chr4.2:108296-108315 None:intergenic 30.0%
AAAAGCCAAACAGCAATAAT+TGG + chr4.2:106931-106950 None:intergenic 30.0%
AAATCACAAGTACAGTAGTT+CGG + chr4.2:108047-108066 None:intergenic 30.0%
AACAATTTAGTGCTAGACAT+TGG + chr4.2:107660-107679 None:intergenic 30.0%
ACTATGAATACATGTTTGGA+TGG + chr4.2:107571-107590 None:intergenic 30.0%
AGACTTCCCTTCATAAATTA+AGG + chr4.2:107929-107948 None:intergenic 30.0%
ATTGTCCCGAATACATATAA+GGG + chr4.2:105582-105601 None:intergenic 30.0%
CACAATTATCCTCGATAAAT+TGG + chr4.2:106627-106646 None:intergenic 30.0%
CACTAATCATTGCTTTGTAT+TGG - chr4.2:108226-108245 MS.gene93739:intron 30.0%
CATGTTTCATCATTCATCAA+AGG + chr4.2:108879-108898 None:intergenic 30.0%
CTTCAGAAAAGAAAATGTCA+TGG + chr4.2:106365-106384 None:intergenic 30.0%
GAACAATATCAAATAGTGAC+AGG + chr4.2:105988-106007 None:intergenic 30.0%
GATAATAATATAAGGGACAC+GGG - chr4.2:108717-108736 MS.gene93739:CDS 30.0%
GGAATATTGATGTCAAAAGA+TGG - chr4.2:107043-107062 MS.gene93739:intron 30.0%
GTCAAAAGATGGAGATTATT+AGG - chr4.2:107054-107073 MS.gene93739:intron 30.0%
TATAAAGCAAAAATACCACC+TGG + chr4.2:105819-105838 None:intergenic 30.0%
TATGAGATACCTTTCACTTT+CGG + chr4.2:108637-108656 None:intergenic 30.0%
TCTCAAGAGATTCTTAATCA+TGG - chr4.2:109154-109173 MS.gene93739:intron 30.0%
TGACATTGAATCAATGGTTT+CGG - chr4.2:108800-108819 MS.gene93739:intron 30.0%
TGTTAGAGTCCAAAAAATGA+AGG + chr4.2:105652-105671 None:intergenic 30.0%
TTAATATATACTACCAGCAC+AGG - chr4.2:108005-108024 MS.gene93739:intron 30.0%
TTGTGTAGAAATGCAAAAGT+TGG - chr4.2:105846-105865 MS.gene93739:CDS 30.0%
TTTAGCAAAGCGACTAAAAA+AGG + chr4.2:107519-107538 None:intergenic 30.0%
! CATGACATTTTCTTTTCTGA+AGG - chr4.2:106363-106382 MS.gene93739:CDS 30.0%
! CATTGAAAATATTTTCCAGG+TGG - chr4.2:105801-105820 MS.gene93739:CDS 30.0%
! GAGCCTATAATATTTTCTTC+TGG - chr4.2:106968-106987 MS.gene93739:CDS 30.0%
! TGTTGAGGTTGCATATTTTT+CGG - chr4.2:108296-108315 MS.gene93739:intron 30.0%
!! ATTTCATCAAGTGTTGATCA+TGG - chr4.2:108578-108597 MS.gene93739:CDS 30.0%
!! GATTTTGAGGAGAAAATCAT+TGG - chr4.2:108741-108760 MS.gene93739:CDS 30.0%
!! TGAGTTTGATTTGCAAAACA+AGG - chr4.2:108422-108441 MS.gene93739:CDS 30.0%
!!! AACTCTTCTCCTTCATTTTT+TGG - chr4.2:105640-105659 MS.gene93739:CDS 30.0%
!!! GCCATTTTTTTCATTTCTCT+TGG - chr4.2:107825-107844 MS.gene93739:intron 30.0%
AAGAGTGAGACTGAATATGA+TGG + chr4.2:105400-105419 None:intergenic 35.0%
AATGTCACTCATCTGTTCAA+TGG + chr4.2:108787-108806 None:intergenic 35.0%
ACGAATTTGAACAGGTATAG+TGG + chr4.2:107021-107040 None:intergenic 35.0%
ACTATGCATCCAATTTATCG+AGG - chr4.2:106615-106634 MS.gene93739:intron 35.0%
ACTGCTCCCTTATATGTATT+CGG - chr4.2:105573-105592 MS.gene93739:CDS 35.0%
AGTATTGTCCCTACTTTCTT+CGG - chr4.2:107588-107607 MS.gene93739:CDS 35.0%
ATCAACACTTGATGAAATGC+AGG + chr4.2:108576-108595 None:intergenic 35.0%
ATGAGATACCTTTCACTTTC+GGG + chr4.2:108636-108655 None:intergenic 35.0%
ATTGGATGCATAGTGCTAAT+TGG + chr4.2:106609-106628 None:intergenic 35.0%
ATTTACACAGACATAGTAGC+AGG - chr4.2:108513-108532 MS.gene93739:intron 35.0%
ATTTCTTGGAAAAATGGCCT+AGG + chr4.2:107228-107247 None:intergenic 35.0%
CACACATCAAAAACGATACA+TGG - chr4.2:107700-107719 MS.gene93739:CDS 35.0%
CATCAATAACCAGTTGACAT+CGG + chr4.2:107740-107759 None:intergenic 35.0%
CATTGTCCCGAATACATATA+AGG + chr4.2:105583-105602 None:intergenic 35.0%
CGAATTTGAACAGGTATAGT+GGG + chr4.2:107020-107039 None:intergenic 35.0%
CTGGAAATCAATTGAGCAAA+AGG + chr4.2:106819-106838 None:intergenic 35.0%
GAATTTGAACAGGTATAGTG+GGG + chr4.2:107019-107038 None:intergenic 35.0%
GAGTTCATAAACAACTTCCT+CGG + chr4.2:105625-105644 None:intergenic 35.0%
GATGAGTGACATTGAATCAA+TGG - chr4.2:108794-108813 MS.gene93739:intron 35.0%
GCTAGTAGTAGTCCTAAAAT+GGG - chr4.2:109026-109045 MS.gene93739:CDS 35.0%
GGAAAGTGATCATACATTGT+TGG - chr4.2:108950-108969 MS.gene93739:CDS 35.0%
GTTGGAACTAATTGATGCAA+GGG - chr4.2:109070-109089 MS.gene93739:CDS 35.0%
TATACCTGTTCAAATTCGTG+AGG - chr4.2:107022-107041 MS.gene93739:CDS 35.0%
TATCGTTGCATTGTGAGATA+TGG - chr4.2:108687-108706 MS.gene93739:CDS 35.0%
TATTCCTCACGAATTTGAAC+AGG + chr4.2:107029-107048 None:intergenic 35.0%
TGCTAGTAGTAGTCCTAAAA+TGG - chr4.2:109025-109044 MS.gene93739:CDS 35.0%
TGTATGCTGCAATTTCACAA+GGG - chr4.2:108321-108340 MS.gene93739:intron 35.0%
TGTTGGAACTAATTGATGCA+AGG - chr4.2:109069-109088 MS.gene93739:CDS 35.0%
TTAAGTTCACAATTTGTGGC+AGG - chr4.2:108159-108178 MS.gene93739:CDS 35.0%
TTGGTTCCTGTATGACAATT+GGG - chr4.2:106018-106037 MS.gene93739:CDS 35.0%
TTTACTAGAACTACAGGACA+AGG + chr4.2:107274-107293 None:intergenic 35.0%
TTTCATCGTCACAACATACT+CGG - chr4.2:106444-106463 MS.gene93739:intron 35.0%
! AAAACAAGGTGTCAACTGAA+TGG - chr4.2:108436-108455 MS.gene93739:CDS 35.0%
! ATAGTGGGAAATTCATCAGA+TGG - chr4.2:108840-108859 MS.gene93739:intron 35.0%
! CATGCTCTACAAATTTTGCA+GGG - chr4.2:107182-107201 MS.gene93739:CDS 35.0%
! GCATGCTTTCTGTTATGTTT+TGG - chr4.2:108270-108289 MS.gene93739:intron 35.0%
! GTATTTAATTTAACCCGCCA+TGG + chr4.2:106653-106672 None:intergenic 35.0%
! GTGTGAATGACTTTTACTCT+GGG + chr4.2:107685-107704 None:intergenic 35.0%
! TCATGCTCTACAAATTTTGC+AGG - chr4.2:107181-107200 MS.gene93739:CDS 35.0%
! TGCTAGACATTGGTTAATGA+TGG + chr4.2:107650-107669 None:intergenic 35.0%
! TGTGTGAATGACTTTTACTC+TGG + chr4.2:107686-107705 None:intergenic 35.0%
! TTGCTCCAATTATTGCTGTT+TGG - chr4.2:106923-106942 MS.gene93739:CDS 35.0%
! TTGGTATCTAGTTGTCCTTT+TGG - chr4.2:108347-108366 MS.gene93739:intron 35.0%
! TTTGGTTCCTGTATGACAAT+TGG - chr4.2:106017-106036 MS.gene93739:CDS 35.0%
!! AATGATCTTTCTAGTTCCCT+AGG - chr4.2:105438-105457 MS.gene93739:CDS 35.0%
!! AATTGGTCGATTTGTGTGTT+TGG - chr4.2:106556-106575 MS.gene93739:intron 35.0%
!! ACCAATTGACTCGACATAAA+GGG + chr4.2:106543-106562 None:intergenic 35.0%
!! CATGTAGTTTGCTTCTAGTT+TGG - chr4.2:106672-106691 MS.gene93739:intron 35.0%
!! GAAAGTGAAAGGTATCTCAT+AGG - chr4.2:108636-108655 MS.gene93739:CDS 35.0%
!! GAGAAAATCATTGGTGCTAT+AGG - chr4.2:108750-108769 MS.gene93739:CDS 35.0%
!!! ATTTTAGGACTACTACTAGC+AGG + chr4.2:109026-109045 None:intergenic 35.0%
AAAGCCGATGATAAAGGAGA+GGG - chr4.2:105708-105727 MS.gene93739:CDS 40.0%
AATCAATACAACACACGCAG+AGG + chr4.2:106854-106873 None:intergenic 40.0%
ACAGGACTTGTGTTTCTCAA+TGG + chr4.2:105970-105989 None:intergenic 40.0%
AGCTGATAACACTGGTAAAC+AGG + chr4.2:106151-106170 None:intergenic 40.0%
AGGTATCTCATAGGAAGGAT+TGG - chr4.2:108645-108664 MS.gene93739:CDS 40.0%
ATATTGTTCTTGGCCCTCTT+TGG - chr4.2:105999-106018 MS.gene93739:CDS 40.0%
ATCAATACAACACACGCAGA+GGG + chr4.2:106853-106872 None:intergenic 40.0%
ATGTGACTGTCCCAAGAAAT+AGG + chr4.2:109108-109127 None:intergenic 40.0%
ATTTCAAGGGTAGCTGGAAT+TGG - chr4.2:108486-108505 MS.gene93739:intron 40.0%
CAATTGAGCAAAAGGTCAAG+AGG + chr4.2:106811-106830 None:intergenic 40.0%
CACTTTCCTCAATTACTGCT+GGG + chr4.2:108938-108957 None:intergenic 40.0%
CCAGTGTTATCAGCTTCATA+TGG - chr4.2:106156-106175 MS.gene93739:CDS 40.0%
CCATATGAAGCTGATAACAC+TGG + chr4.2:106159-106178 None:intergenic 40.0%
CGAGGATAATTGTGTATCCA+TGG - chr4.2:106633-106652 MS.gene93739:intron 40.0%
CTAAAATGGGAGAATCTGTG+AGG - chr4.2:109039-109058 MS.gene93739:CDS 40.0%
CTGCTCCCTTATATGTATTC+GGG - chr4.2:105574-105593 MS.gene93739:CDS 40.0%
GAACGATCATGCTAACTGAA+TGG + chr4.2:108105-108124 None:intergenic 40.0%
GATAATTGTGTATCCATGGC+GGG - chr4.2:106637-106656 MS.gene93739:intron 40.0%
GCAGGTTTGGCTATAATATG+TGG - chr4.2:108177-108196 MS.gene93739:intron 40.0%
GGATAATTGTGTATCCATGG+CGG - chr4.2:106636-106655 MS.gene93739:intron 40.0%
GGCATCTTAGAAATAAAGGG+TGG + chr4.2:107498-107517 None:intergenic 40.0%
GGGAGACAGAAATCATGAAA+AGG + chr4.2:105470-105489 None:intergenic 40.0%
GGTATCTCATAGGAAGGATT+GGG - chr4.2:108646-108665 MS.gene93739:CDS 40.0%
GTATGTTGTGACGATGAAAC+TGG + chr4.2:106443-106462 None:intergenic 40.0%
GTCATGCTTTCATGGCATTA+TGG - chr4.2:108384-108403 MS.gene93739:intron 40.0%
GTGTATGCTGCAATTTCACA+AGG - chr4.2:108320-108339 MS.gene93739:intron 40.0%
TATGCTGTAATCATGCTGCA+TGG - chr4.2:106782-106801 MS.gene93739:intron 40.0%
TCACATTTAGTGGTTCGTGA+TGG - chr4.2:109122-109141 MS.gene93739:intron 40.0%
TCACTTTCCTCAATTACTGC+TGG + chr4.2:108939-108958 None:intergenic 40.0%
TCCCTTTATGTCGAGTCAAT+TGG - chr4.2:106539-106558 MS.gene93739:intron 40.0%
TCCTTAACCAGTAGTATCCT+TGG + chr4.2:106270-106289 None:intergenic 40.0%
TCTTAGAAATAAAGGGTGGC+AGG + chr4.2:107494-107513 None:intergenic 40.0%
TGACATCGGAGATGTAAATC+TGG + chr4.2:107726-107745 None:intergenic 40.0%
TGGTTCCTGTATGACAATTG+GGG - chr4.2:106019-106038 MS.gene93739:CDS 40.0%
TGTCATACAGGAACCAAAGA+GGG + chr4.2:106015-106034 None:intergenic 40.0%
TTAGCTACCAAGGATACTAC+TGG - chr4.2:106260-106279 MS.gene93739:CDS 40.0%
TTCACAATTTGTGGCAGGTT+TGG - chr4.2:108164-108183 MS.gene93739:intron 40.0%
TTCAGAGACATGGTGAAGAT+TGG - chr4.2:107787-107806 MS.gene93739:intron 40.0%
TTCATCGTCACAACATACTC+GGG - chr4.2:106445-106464 MS.gene93739:intron 40.0%
TTGTCATACAGGAACCAAAG+AGG + chr4.2:106016-106035 None:intergenic 40.0%
TTGTGATAGAACCACTGATG+AGG - chr4.2:105878-105897 MS.gene93739:CDS 40.0%
TTTACATCTCCGATGTCAAC+TGG - chr4.2:107728-107747 MS.gene93739:CDS 40.0%
TTTCAAGGGTAGCTGGAATT+GGG - chr4.2:108487-108506 MS.gene93739:intron 40.0%
! ACCAAGGATACTACTGGTTA+AGG - chr4.2:106266-106285 MS.gene93739:CDS 40.0%
! AGTGGTAGTGCCTATTTCTT+GGG - chr4.2:109095-109114 MS.gene93739:CDS 40.0%
! CATCAGTGGTTCTATCACAA+GGG + chr4.2:105878-105897 None:intergenic 40.0%
! CTCACAGATTCTCCCATTTT+AGG + chr4.2:109041-109060 None:intergenic 40.0%
! GATTTTCAGTCTAGCTGTGA+CGG - chr4.2:107759-107778 MS.gene93739:CDS 40.0%
! GTGAGACTGAATATGATGGA+TGG + chr4.2:105396-105415 None:intergenic 40.0%
! TACAAATTTTGCAGGGACAG+AGG - chr4.2:107189-107208 MS.gene93739:CDS 40.0%
! TCATCAGTGGTTCTATCACA+AGG + chr4.2:105879-105898 None:intergenic 40.0%
! TCTGCGTGTGTTGTATTGAT+TGG - chr4.2:106853-106872 MS.gene93739:CDS 40.0%
! TTGGTTAATGATGGAGAAGC+TGG + chr4.2:107641-107660 None:intergenic 40.0%
!! ATACTGATTCCAAAGCACGA+AGG - chr4.2:105943-105962 MS.gene93739:CDS 40.0%
!! CTTTTGTTTGTTGGTGTGGT+GGG - chr4.2:106946-106965 MS.gene93739:CDS 40.0%
!! GACCAATTGACTCGACATAA+AGG + chr4.2:106544-106563 None:intergenic 40.0%
!! GTGAAAGGTATCTCATAGGA+AGG - chr4.2:108640-108659 MS.gene93739:CDS 40.0%
!! TACTGATTCCAAAGCACGAA+GGG - chr4.2:105944-105963 MS.gene93739:CDS 40.0%
!! TTGGCTTTTGTTTGTTGGTG+TGG - chr4.2:106942-106961 MS.gene93739:CDS 40.0%
!!! GCTGTTTGGCTTTTGTTTGT+TGG - chr4.2:106937-106956 MS.gene93739:CDS 40.0%
!!! GTTATGTTTTGGCCTTGTTG+AGG - chr4.2:108281-108300 MS.gene93739:intron 40.0%
AATGGGAGAATCTGTGAGGA+AGG - chr4.2:109043-109062 MS.gene93739:CDS 45.0%
ACTTCTACAAGAGCAGCATG+AGG + chr4.2:109233-109252 None:intergenic 45.0%
AGCTGGCTGTTATAGTTGCT+TGG + chr4.2:107624-107643 None:intergenic 45.0%
CAAAGCCGATGATAAAGGAG+AGG - chr4.2:105707-105726 MS.gene93739:CDS 45.0%
CATGCTGCTCTTGTAGAAGT+TGG - chr4.2:109233-109252 MS.gene93739:intron 45.0%
CCTGCGGCACACATAAAATT+GGG - chr4.2:106893-106912 MS.gene93739:CDS 45.0%
CGATGACAGTCATGCTTTCA+TGG - chr4.2:108376-108395 MS.gene93739:intron 45.0%
CGCTTTGCTAAAGTGATTGC+TGG - chr4.2:107527-107546 MS.gene93739:CDS 45.0%
CGTACCCTCTCCTTTATCAT+CGG + chr4.2:105715-105734 None:intergenic 45.0%
CTAATTGATGCAAGGGAGAG+TGG - chr4.2:109077-109096 MS.gene93739:CDS 45.0%
CTCATGTTCCCGAAAGTGAA+AGG - chr4.2:108625-108644 MS.gene93739:CDS 45.0%
CTGTCATCGACACAACCAAA+AGG + chr4.2:108365-108384 None:intergenic 45.0%
CTTCTACAAGAGCAGCATGA+GGG + chr4.2:109232-109251 None:intergenic 45.0%
CTTCTGGTGATATGCTATGC+GGG - chr4.2:107384-107403 MS.gene93739:CDS 45.0%
CTTGGGACAGTCACATTTAG+TGG - chr4.2:109112-109131 MS.gene93739:intron 45.0%
CTTTCACTTTCGGGAACATG+AGG + chr4.2:108627-108646 None:intergenic 45.0%
GCATAGCATATCACCAGAAG+CGG + chr4.2:107384-107403 None:intergenic 45.0%
GCTTCTGGTGATATGCTATG+CGG - chr4.2:107383-107402 MS.gene93739:CDS 45.0%
GGTCTCATTCAAGTCAATGC+CGG - chr4.2:108599-108618 MS.gene93739:CDS 45.0%
GTGCTCAAAGCCGATGATAA+AGG - chr4.2:105702-105721 MS.gene93739:CDS 45.0%
TAACTGTGCCAAGTCTGACA+AGG + chr4.2:106193-106212 None:intergenic 45.0%
TCAATCCGTACCACGTAAGT+TGG - chr4.2:107461-107480 MS.gene93739:intron 45.0%
TCAGAGATCCTTGTCAGACT+TGG - chr4.2:106182-106201 MS.gene93739:CDS 45.0%
TGCAATTTCACAAGGGAGCT+TGG - chr4.2:108328-108347 MS.gene93739:intron 45.0%
TGGCTAATAGATGTCAGTCC+AGG - chr4.2:108456-108475 MS.gene93739:intron 45.0%
TTAGGACTACTACTAGCAGG+AGG + chr4.2:109023-109042 None:intergenic 45.0%
TTGCTTGATCTATCCGCTTC+TGG - chr4.2:107368-107387 MS.gene93739:CDS 45.0%
! AAAAAGCACGACCTCATCAG+TGG + chr4.2:105892-105911 None:intergenic 45.0%
! CATGAAAAGGAGCTAGCCTA+GGG + chr4.2:105457-105476 None:intergenic 45.0%
! CCAATTTTATGTGTGCCGCA+GGG + chr4.2:106895-106914 None:intergenic 45.0%
! GAGTGGTAGTGCCTATTTCT+TGG - chr4.2:109094-109113 MS.gene93739:CDS 45.0%
! GATTAGCCCAGCAGTAATTG+AGG - chr4.2:108929-108948 MS.gene93739:CDS 45.0%
! TCATGAAAAGGAGCTAGCCT+AGG + chr4.2:105458-105477 None:intergenic 45.0%
! TGGTTCTATCACAAGGGAGT+AGG + chr4.2:105872-105891 None:intergenic 45.0%
!! ATCGGCTTTGAGCACTATGA+TGG + chr4.2:105697-105716 None:intergenic 45.0%
!! GCTTTTGTTTGTTGGTGTGG+TGG - chr4.2:106945-106964 MS.gene93739:CDS 45.0%
!! TGAGGGATTTTGAGAGCAAC+TGG + chr4.2:109215-109234 None:intergenic 45.0%
!! TGATGAGGTCGTGCTTTTTG+AGG - chr4.2:105893-105912 MS.gene93739:CDS 45.0%
!! AAAATGAAAATATAATTAAA+TGG + chr4.2:106088-106107 None:intergenic 5.0%
!! AAATGAAAATATAATTAAAT+GGG + chr4.2:106087-106106 None:intergenic 5.0%
AAATAAAGGGTGGCAGGCAC+TGG + chr4.2:107488-107507 None:intergenic 50.0%
ACCTTAGAGTCATGAGCAGC+AGG + chr4.2:105369-105388 None:intergenic 50.0%
AGCGCAAGATCTTGAATCCG+AGG - chr4.2:105605-105624 MS.gene93739:CDS 50.0%
ATAGATGTCAGTCCAGGCCT+TGG - chr4.2:108462-108481 MS.gene93739:intron 50.0%
ATCTGTGAGGAAGGAGCTGT+TGG - chr4.2:109052-109071 MS.gene93739:CDS 50.0%
CAGCTACCCTTGAAATCCCA+AGG + chr4.2:108482-108501 None:intergenic 50.0%
CCCTGCGGCACACATAAAAT+TGG - chr4.2:106892-106911 MS.gene93739:CDS 50.0%
CTGGACCAACTTACGTGGTA+CGG + chr4.2:107469-107488 None:intergenic 50.0%
CTTGGGATTTCAAGGGTAGC+TGG - chr4.2:108480-108499 MS.gene93739:intron 50.0%
TAGATGTCAGTCCAGGCCTT+GGG - chr4.2:108463-108482 MS.gene93739:intron 50.0%
TCCAGGCCTTGGGATTTCAA+GGG - chr4.2:108473-108492 MS.gene93739:intron 50.0%
TCCCTACTTTCTTCGGCTGT+CGG - chr4.2:107595-107614 MS.gene93739:CDS 50.0%
TCCGACAGCCGAAGAAAGTA+GGG + chr4.2:107599-107618 None:intergenic 50.0%
TCCTGCTGCTCATGACTCTA+AGG - chr4.2:105365-105384 MS.gene93739:CDS 50.0%
TTCAGTCTAGCTGTGACGGT+TGG - chr4.2:107763-107782 MS.gene93739:CDS 50.0%
TTCCGACAGCCGAAGAAAGT+AGG + chr4.2:107600-107619 None:intergenic 50.0%
! AAGGGACACGGGTGATTTTG+AGG - chr4.2:108728-108747 MS.gene93739:CDS 50.0%
! CCATTTTATGCGCAGCAGGT+GGG - chr4.2:107082-107101 MS.gene93739:intron 50.0%
! CCCAATTTTATGTGTGCCGC+AGG + chr4.2:106896-106915 None:intergenic 50.0%
! TGCTGGTGATGACATACTGC+AGG - chr4.2:107544-107563 MS.gene93739:CDS 50.0%
! TGTATACCACCTGAGAGTGC+TGG + chr4.2:106059-106078 None:intergenic 50.0%
!! GACGGTTGGTTTCAGAGACA+TGG - chr4.2:107777-107796 MS.gene93739:intron 50.0%
!! GGGATTTTGAGAGCAACTGG+AGG + chr4.2:109212-109231 None:intergenic 50.0%
ACAACACACGCAGAGGGAAC+AGG + chr4.2:106847-106866 None:intergenic 55.0%
ACCCTTGAAATCCCAAGGCC+TGG + chr4.2:108477-108496 None:intergenic 55.0%
CCCACCTGCTGCGCATAAAA+TGG + chr4.2:107085-107104 None:intergenic 55.0%
CTCAATGGCCCTTCGTGCTT+TGG + chr4.2:105955-105974 None:intergenic 55.0%
CTTTCGGGAACATGAGGCAC+CGG + chr4.2:108621-108640 None:intergenic 55.0%
GAGGCAATGTTTGCAGGCCT+AGG - chr4.2:107208-107227 MS.gene93739:CDS 55.0%
GCAGAGGGAACAGGTACATC+TGG + chr4.2:106838-106857 None:intergenic 55.0%
GGGACAGAGGCAATGTTTGC+AGG - chr4.2:107202-107221 MS.gene93739:CDS 55.0%
GGTGATATGCTATGCGGGTC+AGG - chr4.2:107389-107408 MS.gene93739:CDS 55.0%
GTCCAGGCCTTGGGATTTCA+AGG - chr4.2:108472-108491 MS.gene93739:intron 55.0%
TAACTGCACTGTGCCTGTGC+TGG + chr4.2:108021-108040 None:intergenic 55.0%
TGCGGCCCCAATTGTCATAC+AGG + chr4.2:106027-106046 None:intergenic 55.0%
!! AGCGCCATTTTATGCGCAGC+AGG - chr4.2:107078-107097 MS.gene93739:intron 55.0%
!! AGGCACTGGACCAACTTACG+TGG + chr4.2:107474-107493 None:intergenic 55.0%
!! GCCATTTTATGCGCAGCAGG+TGG - chr4.2:107081-107100 MS.gene93739:intron 55.0%
CTCACTCCAGCACTCTCAGG+TGG - chr4.2:106050-106069 MS.gene93739:CDS 60.0%
GTCCTCACTCCAGCACTCTC+AGG - chr4.2:106047-106066 MS.gene93739:CDS 60.0%
!! CACCTGAGAGTGCTGGAGTG+AGG + chr4.2:106052-106071 None:intergenic 60.0%
!! GAGTGCTGGAGTGAGGACTG+CGG + chr4.2:106045-106064 None:intergenic 60.0%
CTGTTCGTGCTGCAGCCCTG+CGG - chr4.2:106877-106896 MS.gene93739:CDS 65.0%
CGCAGGGCTGCAGCACGAAC+AGG + chr4.2:106879-106898 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 105348 109274 105348 ID=MS.gene93739
chr4.2 mRNA 105348 109274 105348 ID=MS.gene93739.t1;Parent=MS.gene93739
chr4.2 exon 109236 109274 109236 ID=MS.gene93739.t1.exon1;Parent=MS.gene93739.t1
chr4.2 CDS 109236 109274 109236 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 108893 109118 108893 ID=MS.gene93739.t1.exon2;Parent=MS.gene93739.t1
chr4.2 CDS 108893 109118 108893 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 108554 108802 108554 ID=MS.gene93739.t1.exon3;Parent=MS.gene93739.t1
chr4.2 CDS 108554 108802 108554 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 108409 108462 108409 ID=MS.gene93739.t1.exon4;Parent=MS.gene93739.t1
chr4.2 CDS 108409 108462 108409 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 108128 108178 108128 ID=MS.gene93739.t1.exon5;Parent=MS.gene93739.t1
chr4.2 CDS 108128 108178 108128 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 107523 107783 107523 ID=MS.gene93739.t1.exon6;Parent=MS.gene93739.t1
chr4.2 CDS 107523 107783 107523 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 107367 107419 107367 ID=MS.gene93739.t1.exon7;Parent=MS.gene93739.t1
chr4.2 CDS 107367 107419 107367 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 107148 107265 107148 ID=MS.gene93739.t1.exon8;Parent=MS.gene93739.t1
chr4.2 CDS 107148 107265 107148 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 106802 107056 106802 ID=MS.gene93739.t1.exon9;Parent=MS.gene93739.t1
chr4.2 CDS 106802 107056 106802 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
chr4.2 exon 105348 106441 105348 ID=MS.gene93739.t1.exon10;Parent=MS.gene93739.t1
chr4.2 CDS 105348 106441 105348 ID=cds.MS.gene93739.t1;Parent=MS.gene93739.t1
Gene Sequence

>MS.gene93739

ATGGCTTCTCAACTGCATCCTGCTGCTCATGACTCTAAGGTACATCCATCCATCATATTCAGTCTCACTCTTTTTTTTAATATACAAACAAATGATCTTTCTAGTTCCCTAGGCTAGCTCCTTTTCATGATTTCTGTCTCCCTATTATTTTTTCAGAATAAAAGATGGAATCAATCAATTCTCTTGTCATTTCAAATTATTGGAATAGTTTATGGTCAACTTAGCACTGCTCCCTTATATGTATTCGGGACAATGCAAGCGCAAGATCTTGAATCCGAGGAAGTTGTTTATGAACTCTTCTCCTTCATTTTTTGGACTCTAACAACTATTTCTTTGATCAAGTATGCCATCATAGTGCTCAAAGCCGATGATAAAGGAGAGGGTACGTAATAATAAATCAATTTTATTCACTTCACTTTCACTAAATATTATTTACTCCAATTATATTCACTACATTGAAAATATTTTCCAGGTGGTATTTTTGCTTTATACTCACTATTGTGTAGAAATGCAAAAGTTGGCCTACTCCCTTGTGATAGAACCACTGATGAGGTCGTGCTTTTTGAGGAGACAACAACTCCTTCTTCTAAGATTAATACTGATTCCAAAGCACGAAGGGCCATTGAGAAACACAAGTCCTGTCACTATTTGATATTGTTCTTGGCCCTCTTTGGTTCCTGTATGACAATTGGGGCCGCAGTCCTCACTCCAGCACTCTCAGGTGGTATACACAACTCCCATTTAATTATATTTTCATTTTCTTACAACTAACTTCATACCTAAGATTTATATACTTTCTGCCTGTTTACCAGTGTTATCAGCTTCATATGGTGTTCAGAGATCCTTGTCAGACTTGGCACAGTTATGTAAGTGTGTTTATTTAGACTACAAATAAAACCTATATTTATTATTTTAGCTACCAAGGATACTACTGGTTAAGGAACAATTGATTTAAAATAACCAATATATTTACTGCTTTTCTTGCTATTAAATTCTTTCGATTTTCGTTTGCTTCCATGACATTTTCTTTTCTGAAGGACATATCAATACTTATTTGATACTTCAAGTGTTTGATTGCTTTGTTGTTTATAACCAGTTTCATCGTCACAACATACTCGGGATTCCGTCTCAAATGTTCTACAAAAATGTAAGTACTTTATGTTCGTTTGATTGTTAAAGTTCTTTCAAATGTCCCTTTATGTCGAGTCAATTGGTCGATTTGTGTGTTTGGATAAAAGAAACTATAGCTTCTCACTTGCCAATTAGCACTATGCATCCAATTTATCGAGGATAATTGTGTATCCATGGCGGGTTAAATTAAATACATGTAGTTTGCTTCTAGTTTGGTGCATTTTAGTTTTTGAAATCTGATGGAACATTCGATTATTTTTATTTTTTAATAAAGTAAATGAAAAGTAGATAAATATTTATGAATATGCTGTAATCATGCTGCATGGAATCCTCTTGACCTTTTGCTCAATTGATTTCCAGATGTACCTGTTCCCTCTGCGTGTGTTGTATTGATTGGCCTGTTCGTGCTGCAGCCCTGCGGCACACATAAAATTGGGTTCATGTTTGCTCCAATTATTGCTGTTTGGCTTTTGTTTGTTGGTGTGGTGGGAGCCTATAATATTTTCTTCTGGGATGTCAAAATTATCTATAAAATATCCCCACTATACCTGTTCAAATTCGTGAGGAATATTGATGTCAAAAGATGGAGATTATTAGGAAGCGCCATTTTATGCGCAGCAGGTGGGATTTGTCTATTATTTTTTATGAACAAAAAATAATCACCAAGTGATTGTTAATTAGAATTGTTTTGGAGGACTAATATCATGCTCTACAAATTTTGCAGGGACAGAGGCAATGTTTGCAGGCCTAGGCCATTTTTCCAAGAAATCAATCAAGGTATTATAATGCATACCTTGTCCTGTAGTTCTAGTAAATTGATTGTAATAAAAAACTATTAGTAACAACTCGTGCATCGTGCATGTGTCTGTTGTTTGTAGATTACATTTATTTGCTTGATCTATCCGCTTCTGGTGATATGCTATGCGGGTCAGGCTGCATATATCTCTAAAAACTTGAACACTCGAGATTTTAATCATCTTAGTCAATCCGTACCACGTAAGTTGGTCCAGTGCCTGCCACCCTTTATTTCTAAGATGCCTTTTTTAGTCGCTTTGCTAAAGTGATTGCTGGTGATGACATACTGCAGGTCCATCCAAACATGTATTCATAGTATTGTCCCTACTTTCTTCGGCTGTCGGAAGCCAAGCAACTATAACAGCCAGCTTCTCCATCATTAACCAATGTCTAGCACTAAATTGTTTTCCCAGAGTAAAAGTCATTCACACATCAAAAACGATACATGGCCAGATTTACATCTCCGATGTCAACTGGTTATTGATGATTTTCAGTCTAGCTGTGACGGTTGGTTTCAGAGACATGGTGAAGATTGGCAACGCAACAAGTATGCCATTTTTTTCATTTCTCTTGGTGTTAATTAATGTTTTTTTCTTGAGTTATTAATCAAGAGAGTAGCTCCCATTTTTGCATTAAACTAGAAAATTTGAGTCCTTAATTTATGAAGGGAAGTCTTAAGAAAATGAAAAGTTGGTAAATTAAACAGGGAATGCAGATAAAAGAATTGATGTTTAATATATACTACCAGCACAGGCACAGTGCAGTTATGTCCGAACTACTGTACTTGTGATTTGATTAAATTAAGGATGGTTATATGGAACTTGTTTACCATTCAGTTAGCATGATCGTTCGTTAATGACATTAAAATCATAATAGTGTAATTAATTAAGTTCACAATTTGTGGCAGGTTTGGCTATAATATGTGGAATGCTTGTGACAACTAGTCTCATGTCACTAATCATTGCTTTGTATTGGGAGAAGAATTTGATGATATCTGCATGCTTTCTGTTATGTTTTGGCCTTGTTGAGGTTGCATATTTTTCGGCGTGTATGCTGCAATTTCACAAGGGAGCTTGGTATCTAGTTGTCCTTTTGGTTGTGTCGATGACAGTCATGCTTTCATGGCATTATGGAACAGTGAAGAAGTATGAGTTTGATTTGCAAAACAAGGTGTCAACTGAATGGCTAATAGATGTCAGTCCAGGCCTTGGGATTTCAAGGGTAGCTGGAATTGGGTTCATTTACACAGACATAGTAGCAGGAATCCCAGCTTTCTTTTCACATTTTATTACTAATCTTCCTGCATTTCATCAAGTGTTGATCATGGTCTCATTCAAGTCAATGCCGGTGCCTCATGTTCCCGAAAGTGAAAGGTATCTCATAGGAAGGATTGGGCCAAAAGATTATAAAATATATCGTTGCATTGTGAGATATGGATATTGTGATAATAATATAAGGGACACGGGTGATTTTGAGGAGAAAATCATTGGTGCTATAGGAGAATTCATTTCCATTGAACAGATGAGTGACATTGAATCAATGGTTTCGGCAGAAGAAAAAATGATGATAGTGGGAAATTCATCAGATGGAAATGCATTAGTCCCTTTGATGAATGATGAAACATGCAATGAAGTTAGCATTACTAATGAAGCTCAGATTAGCCCAGCAGTAATTGAGGAAAGTGATCATACATTGTTGGCGAGTAGTAGCTCTTGCAACAAAAGAAAAAAAGTACGGTTCATGTTGCCTCCTGCTAGTAGTAGTCCTAAAATGGGAGAATCTGTGAGGAAGGAGCTGTTGGAACTAATTGATGCAAGGGAGAGTGGTAGTGCCTATTTCTTGGGACAGTCACATTTAGTGGTTCGTGATGGCTCAAACTATCTCAAGAGATTCTTAATCATGGTTTTTCGTTTCTTTGAAAAGAATGGTCGTGAACCTCCAGTTGCTCTCAAAATCCCTCATGCTGCTCTTGTAGAAGTTGGTATGATATGTACTATATAA
Protein sequence

>MS.gene93739.t1

MASQLHPAAHDSKNKRWNQSILLSFQIIGIVYGQLSTAPLYVFGTMQAQDLESEEVVYELFSFIFWTLTTISLIKYAIIVLKADDKGEGGIFALYSLLCRNAKVGLLPCDRTTDEVVLFEETTTPSSKINTDSKARRAIEKHKSCHYLILFLALFGSCMTIGAAVLTPALSVLSASYGVQRSLSDLAQLFSSSQHTRDSVSNVLQKYVPVPSACVVLIGLFVLQPCGTHKIGFMFAPIIAVWLLFVGVVGAYNIFFWDVKIIYKISPLYLFKFVRNIDVKRWRLLGSAILCAAGTEAMFAGLGHFSKKSIKITFICLIYPLLVICYAGQAAYISKNLNTRDFNHLSQSVPRPSKHVFIVLSLLSSAVGSQATITASFSIINQCLALNCFPRVKVIHTSKTIHGQIYISDVNWLLMIFSLAVTVGFRDMVKIGNATSLAIICGMLVTTSLMSLIIALYWEKNLMISACFLLCFGLVEVAYFSACMLQFHKGAWYLVVLLVVSMTVMLSWHYGTVKKYEFDLQNKVSTEWLIDVSPGLGISRVAGIGFIYTDIVAGIPAFFSHFITNLPAFHQVLIMVSFKSMPVPHVPESERYLIGRIGPKDYKIYRCIVRYGYCDNNIRDTGDFEEKIIGAIGEFISIEQMSDIESMVSAEEKMMIVGNSSDGNALVPLMNDETCNEVSITNEAQISPAVIEESDHTLLASSSSCNKRKKVRFMLPPASSSPKMGESVRKELLELIDARESGSAYFLGQSHLVVRDGSNYLKRFLIMVFRFFEKNGREPPVALKIPHAALVEVGMICTI