Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94604.t1 | XP_024632360.1 | 76.3 | 245 | 38 | 2 | 1 | 226 | 15 | 258 | 3.60E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94604.t1 | Q9MAT6 | 52.9 | 51 | 24 | 0 | 176 | 226 | 158 | 208 | 1.2e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94604.t1 | A0A072VBD4 | 76.3 | 245 | 38 | 2 | 1 | 226 | 15 | 258 | 2.6e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene94604 | 0.808692 | 2.73E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene94604 | 0.808752 | 2.65E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene94604 | 0.839315 | 1.71E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene94604 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene94604 | 0.814853 | 1.25E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene94604 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene94604 | 0.816631 | 5.01E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene94604 | 0.813045 | 3.12E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene94604 | 0.822264 | 2.60E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene94604 | 0.825706 | 4.05E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene94604 | 0.826877 | 2.13E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene94604 | 0.824953 | 6.10E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene94604 | 0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene94604 | 0.823258 | 1.53E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene94604 | 0.811925 | 5.49E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene94604 | 0.818332 | 2.07E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene94604 | 0.823586 | 1.28E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene94604 | 0.819737 | 9.93E-53 | -1.69E-46 |
| MS.gene053621 | MS.gene94604 | 0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene94604 | 0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene94604 | 0.823493 | 1.34E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene94604 | 0.803209 | 3.89E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene94604 | 0.852393 | 4.76E-61 | -1.69E-46 |
| MS.gene054775 | MS.gene94604 | 0.813141 | 2.97E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene94604 | 0.808852 | 2.53E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene94604 | 0.809969 | 1.45E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene94604 | 0.825684 | 4.10E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene94604 | 0.833551 | 5.00E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene94604 | 0.821369 | 4.19E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene94604 | 0.800636 | 1.31E-48 | -1.69E-46 |
| MS.gene057921 | MS.gene94604 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene94604 | 0.817408 | 3.35E-52 | -1.69E-46 |
| MS.gene058294 | MS.gene94604 | 0.811785 | 5.88E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene94604 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene94604 | 0.815878 | 7.38E-52 | -1.69E-46 |
| MS.gene059272 | MS.gene94604 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene94604 | 0.805142 | 1.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94604.t1 | MTR_2g084410 | 82.927 | 246 | 20 | 3 | 1 | 226 | 15 | 258 | 5.63e-141 | 395 |
| MS.gene94604.t1 | MTR_2g084375 | 82.114 | 246 | 22 | 3 | 1 | 226 | 1 | 244 | 3.03e-139 | 390 |
| MS.gene94604.t1 | MTR_2g084425 | 86.577 | 149 | 15 | 1 | 3 | 151 | 220 | 363 | 1.10e-79 | 256 |
| MS.gene94604.t1 | MTR_2g084425 | 86.577 | 149 | 15 | 1 | 3 | 151 | 220 | 363 | 2.74e-79 | 256 |
| MS.gene94604.t1 | MTR_2g072760 | 74.242 | 132 | 31 | 1 | 3 | 131 | 4 | 135 | 1.93e-63 | 194 |
| MS.gene94604.t1 | MTR_2g072770 | 66.154 | 130 | 15 | 1 | 3 | 132 | 54 | 154 | 1.32e-52 | 167 |
| MS.gene94604.t1 | MTR_7g102610 | 38.281 | 128 | 75 | 1 | 10 | 137 | 249 | 372 | 3.77e-22 | 94.7 |
| MS.gene94604.t1 | MTR_3g009890 | 78.571 | 56 | 12 | 0 | 171 | 226 | 156 | 211 | 2.17e-21 | 89.7 |
| MS.gene94604.t1 | MTR_1g062330 | 33.562 | 146 | 93 | 2 | 7 | 152 | 95 | 236 | 4.18e-20 | 89.0 |
| MS.gene94604.t1 | MTR_1g062330 | 33.562 | 146 | 93 | 2 | 7 | 152 | 95 | 236 | 4.64e-20 | 88.6 |
| MS.gene94604.t1 | MTR_7g023750 | 39.450 | 109 | 61 | 1 | 9 | 117 | 404 | 507 | 7.04e-19 | 85.1 |
| MS.gene94604.t1 | MTR_7g023750 | 39.450 | 109 | 61 | 1 | 9 | 117 | 401 | 504 | 7.43e-19 | 85.1 |
| MS.gene94604.t1 | MTR_7g023750 | 39.450 | 109 | 61 | 1 | 9 | 117 | 358 | 461 | 8.13e-19 | 84.7 |
| MS.gene94604.t1 | MTR_1g067750 | 36.207 | 116 | 69 | 1 | 2 | 117 | 385 | 495 | 4.71e-18 | 82.8 |
| MS.gene94604.t1 | MTR_1g067750 | 37.615 | 109 | 63 | 1 | 9 | 117 | 401 | 504 | 5.03e-18 | 82.4 |
| MS.gene94604.t1 | MTR_1g068930 | 33.588 | 131 | 80 | 2 | 9 | 139 | 254 | 377 | 1.09e-15 | 75.9 |
| MS.gene94604.t1 | MTR_1g068930 | 33.588 | 131 | 80 | 2 | 9 | 139 | 254 | 377 | 1.16e-15 | 75.9 |
| MS.gene94604.t1 | MTR_4g063150 | 33.028 | 109 | 67 | 1 | 9 | 117 | 318 | 420 | 2.76e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94604.t1 | AT2G27980 | 52.448 | 143 | 67 | 1 | 9 | 151 | 377 | 518 | 8.12e-43 | 154 |
| MS.gene94604.t1 | AT2G36720 | 34.507 | 142 | 90 | 1 | 10 | 151 | 261 | 399 | 1.49e-20 | 90.1 |
| MS.gene94604.t1 | AT2G36720 | 34.507 | 142 | 90 | 1 | 10 | 151 | 261 | 399 | 1.49e-20 | 90.1 |
| MS.gene94604.t1 | AT5G13660 | 38.400 | 125 | 72 | 2 | 2 | 125 | 391 | 511 | 3.12e-20 | 89.0 |
| MS.gene94604.t1 | AT5G13660 | 38.400 | 125 | 71 | 2 | 2 | 125 | 391 | 510 | 6.91e-20 | 88.2 |
| MS.gene94604.t1 | AT5G59830 | 35.780 | 109 | 64 | 1 | 9 | 117 | 290 | 392 | 2.84e-17 | 80.1 |
| MS.gene94604.t1 | AT5G59830 | 35.780 | 109 | 64 | 1 | 9 | 117 | 290 | 392 | 2.84e-17 | 80.1 |
| MS.gene94604.t1 | AT5G59830 | 35.780 | 109 | 64 | 1 | 9 | 117 | 290 | 392 | 2.84e-17 | 80.1 |
| MS.gene94604.t1 | AT3G53680 | 37.615 | 109 | 63 | 1 | 9 | 117 | 182 | 285 | 1.55e-16 | 78.6 |
| MS.gene94604.t1 | AT3G53680 | 37.615 | 109 | 63 | 1 | 9 | 117 | 182 | 285 | 1.55e-16 | 78.6 |
| MS.gene94604.t1 | AT2G37520 | 28.141 | 199 | 123 | 4 | 9 | 199 | 172 | 358 | 4.17e-15 | 74.3 |
Find 58 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCAACTGGGATTC+TGG | 0.215141 | 2.4:+15120472 | MS.gene94604:CDS |
| TAATCCGGAGGACGTTTATT+AGG | 0.284155 | 2.4:-15120887 | None:intergenic |
| CAAGGTGTGATCAAAGATTC+AGG | 0.313892 | 2.4:+15120682 | MS.gene94604:CDS |
| AGAGGATGTGCTCTTGGTTT+CGG | 0.333260 | 2.4:+15121244 | MS.gene94604:intron |
| CTGAAGGATCTTCTTGCAAC+TGG | 0.333826 | 2.4:+15120464 | MS.gene94604:CDS |
| TGGGAGTTGTAAGGGGAATC+AGG | 0.356202 | 2.4:+15120720 | MS.gene94604:CDS |
| CAAACAATGAAGGGAGGTTC+TGG | 0.363982 | 2.4:+15120422 | None:intergenic |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.366436 | 2.4:-15122178 | None:intergenic |
| TGAAATCACCCAGGACCATT+TGG | 0.397269 | 2.4:-15120994 | None:intergenic |
| TGAGAATGGAAAACTCCTTC+GGG | 0.415866 | 2.4:+15120919 | MS.gene94604:CDS |
| GATTATACTTACCTTGAGAA+TGG | 0.429569 | 2.4:+15120905 | MS.gene94604:CDS |
| GGCGCGTAAACCGGAAGAAA+AGG | 0.434518 | 2.4:+15120654 | MS.gene94604:intron |
| AGAAGATCCTTCAGCTTGAC+AGG | 0.436708 | 2.4:-15120455 | None:intergenic |
| ATCCAATGGAAGACTTGAAC+AGG | 0.446319 | 2.4:-15120954 | None:intergenic |
| AAAAGAAGAGGATGTGCTCT+TGG | 0.451018 | 2.4:+15121238 | MS.gene94604:intron |
| ACTTCTTCCAAGAAAATAAG+AGG | 0.454192 | 2.4:+15121319 | MS.gene94604:CDS |
| TTGAGAATGGAAAACTCCTT+CGG | 0.454228 | 2.4:+15120918 | MS.gene94604:CDS |
| ATTGGATACATTGGATAAAG+AGG | 0.455338 | 2.4:+15120970 | MS.gene94604:CDS |
| GTCTCTTTCAACTCCATGCA+TGG | 0.468548 | 2.4:-15121193 | None:intergenic |
| TGATGTGTAGGCGCGTAAAC+CGG | 0.469006 | 2.4:+15120645 | MS.gene94604:intron |
| ATATATAGTCACGGTGGACC+TGG | 0.469482 | 2.4:+15122246 | MS.gene94604:CDS |
| TAAAGAGGTCCAAATGGTCC+TGG | 0.476200 | 2.4:+15120985 | MS.gene94604:CDS |
| TGAAGGGAGGTTCTGGTAAG+TGG | 0.478664 | 2.4:+15120429 | MS.gene94604:CDS |
| CTTGCAACTGGGATTCTGGA+GGG | 0.487680 | 2.4:+15120476 | MS.gene94604:CDS |
| TGCCTGTTCAAGTCTTCCAT+TGG | 0.493775 | 2.4:+15120952 | MS.gene94604:CDS |
| TCAGTGCATGGAACAATTGA+CGG | 0.496206 | 2.4:+15122208 | MS.gene94604:CDS |
| AAGTCTTCCATTGGATACAT+TGG | 0.498881 | 2.4:+15120961 | MS.gene94604:CDS |
| TTCTCAAGGTAAGTATAATC+CGG | 0.505601 | 2.4:-15120902 | None:intergenic |
| ATTGGATAAAGAGGTCCAAA+TGG | 0.516952 | 2.4:+15120979 | MS.gene94604:CDS |
| TAGTCCTAATAAACGTCCTC+CGG | 0.530968 | 2.4:+15120883 | MS.gene94604:CDS |
| TGAAGGATCTTCTTGCAACT+GGG | 0.557026 | 2.4:+15120465 | MS.gene94604:CDS |
| AATATCTGTTTCAACTGCAG+AGG | 0.560462 | 2.4:+15121031 | MS.gene94604:CDS |
| TCTTTATCCAATGTATCCAA+TGG | 0.560928 | 2.4:-15120968 | None:intergenic |
| CCGGAAGAAAAGGATTTACA+AGG | 0.568192 | 2.4:+15120664 | MS.gene94604:CDS |
| ATTGAAAGTGAGATATGTCA+AGG | 0.573844 | 2.4:+15120499 | MS.gene94604:CDS |
| GAAGAACCGAGTGTCTGTGC+TGG | 0.576107 | 2.4:-15122187 | None:intergenic |
| TCTTGTGACCAAACAATGAA+GGG | 0.576525 | 2.4:+15120413 | None:intergenic |
| GTCAATTACTGAATCTAACA+AGG | 0.580889 | 2.4:+15121147 | MS.gene94604:CDS |
| CAGTGCATGGAACAATTGAC+GGG | 0.580953 | 2.4:+15122209 | MS.gene94604:CDS |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 2.4:+15122265 | MS.gene94604:CDS |
| TATATAGTCACGGTGGACCT+GGG | 0.588733 | 2.4:+15122247 | MS.gene94604:CDS |
| GAGATATGTCAAGGGACAGA+AGG | 0.592127 | 2.4:+15120508 | MS.gene94604:CDS |
| ACTAGTATGCAATCCATGCA+TGG | 0.592882 | 2.4:+15121180 | MS.gene94604:CDS |
| TCTTGCAACTGGGATTCTGG+AGG | 0.593767 | 2.4:+15120475 | MS.gene94604:CDS |
| AAAGAGGTCCAAATGGTCCT+GGG | 0.599169 | 2.4:+15120986 | MS.gene94604:CDS |
| GTGGTTTCCTGTCAAGCTGA+AGG | 0.601332 | 2.4:+15120448 | MS.gene94604:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 2.4:-15122264 | None:intergenic |
| ATTGACGGGAAATTTGATGA+CGG | 0.626327 | 2.4:+15122223 | MS.gene94604:CDS |
| ACACTCGGTTCTTCAGTGCA+TGG | 0.628634 | 2.4:+15122196 | MS.gene94604:CDS |
| ATTAGTCCAGCACAGACACT+CGG | 0.635032 | 2.4:+15122181 | MS.gene94604:CDS |
| TTGAAAGTGAGATATGTCAA+GGG | 0.671458 | 2.4:+15120500 | MS.gene94604:CDS |
| TCAATTACTGAATCTAACAA+GGG | 0.676694 | 2.4:+15121148 | MS.gene94604:CDS |
| TGATGACGGATATATAGTCA+CGG | 0.676944 | 2.4:+15122237 | MS.gene94604:CDS |
| TGTGACCAAACAATGAAGGG+AGG | 0.679689 | 2.4:+15120416 | None:intergenic |
| AGGCATTCATGACATCCCGA+AGG | 0.693693 | 2.4:-15120934 | None:intergenic |
| TCAAGGTAAGTATAATCCGG+AGG | 0.695456 | 2.4:-15120899 | None:intergenic |
| TCTGCATTGTGAAATCACCC+AGG | 0.713370 | 2.4:-15121003 | None:intergenic |
| TGACGGATATATAGTCACGG+TGG | 0.799576 | 2.4:+15122240 | MS.gene94604:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTGTTTTGAAAC+TGG | + | chr2.4:15121599-15121618 | MS.gene94604:intron | 15.0% |
| !!! | AGTTTTTTTTTTCTTTCTTG+TGG | + | chr2.4:15120591-15120610 | MS.gene94604:intron | 20.0% |
| !!! | GTATATTGTTTTGAACTTTT+CGG | + | chr2.4:15120530-15120549 | MS.gene94604:intron | 20.0% |
| ! | AACAAAGTTCTTATCTATGT+TGG | + | chr2.4:15122095-15122114 | MS.gene94604:intron | 25.0% |
| ! | ATTATGACATCGTTTAATCT+GGG | + | chr2.4:15121756-15121775 | MS.gene94604:intron | 25.0% |
| ! | TCAAAAAATAAGAGAGAAGA+AGG | + | chr2.4:15121268-15121287 | MS.gene94604:CDS | 25.0% |
| ! | TCAATTACTGAATCTAACAA+GGG | + | chr2.4:15121148-15121167 | MS.gene94604:CDS | 25.0% |
| ! | TTGTATGTTTACAAGTTTCT+AGG | - | chr2.4:15121355-15121374 | None:intergenic | 25.0% |
| !! | AATTTTCATGAACTGTTTGT+AGG | + | chr2.4:15121124-15121143 | MS.gene94604:intron | 25.0% |
| !! | ATTTTCATGAACTGTTTGTA+GGG | + | chr2.4:15121125-15121144 | MS.gene94604:intron | 25.0% |
| !! | TCGTTTCTTTAATTTAGACT+TGG | + | chr2.4:15121659-15121678 | MS.gene94604:intron | 25.0% |
| !! | TGAAATATTTTTCTGTGATG+TGG | + | chr2.4:15121492-15121511 | MS.gene94604:intron | 25.0% |
| !!! | AGCTGAAAAGAGTTTTTTAA+CGG | - | chr2.4:15121898-15121917 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTTTGCTTGTGT+GGG | + | chr2.4:15120763-15120782 | MS.gene94604:intron | 25.0% |
| !!! | TGTAATACCTCTTATTTTCT+TGG | - | chr2.4:15121329-15121348 | None:intergenic | 25.0% |
| !!! | TTATTGTTTTTTTGCTTGTG+TGG | + | chr2.4:15120762-15120781 | MS.gene94604:intron | 25.0% |
| ACGAATCATCTATGAATGAA+TGG | - | chr2.4:15121643-15121662 | None:intergenic | 30.0% | |
| ACTTCTTCCAAGAAAATAAG+AGG | + | chr2.4:15121319-15121338 | MS.gene94604:CDS | 30.0% | |
| ATTGAAAGTGAGATATGTCA+AGG | + | chr2.4:15120499-15120518 | MS.gene94604:CDS | 30.0% | |
| ATTGGATACATTGGATAAAG+AGG | + | chr2.4:15120970-15120989 | MS.gene94604:CDS | 30.0% | |
| CATTATGACATCGTTTAATC+TGG | + | chr2.4:15121755-15121774 | MS.gene94604:intron | 30.0% | |
| GATTATACTTACCTTGAGAA+TGG | + | chr2.4:15120905-15120924 | MS.gene94604:CDS | 30.0% | |
| GGACGTATAGTCAATATTAT+TGG | - | chr2.4:15121398-15121417 | None:intergenic | 30.0% | |
| GTCAATTACTGAATCTAACA+AGG | + | chr2.4:15121147-15121166 | MS.gene94604:CDS | 30.0% | |
| GTGAAATTGTGAATGATGTT+AGG | + | chr2.4:15120568-15120587 | MS.gene94604:intron | 30.0% | |
| TCTTTATCCAATGTATCCAA+TGG | - | chr2.4:15120971-15120990 | None:intergenic | 30.0% | |
| TTCTCAAGGTAAGTATAATC+CGG | - | chr2.4:15120905-15120924 | None:intergenic | 30.0% | |
| TTGAAAGTGAGATATGTCAA+GGG | + | chr2.4:15120500-15120519 | MS.gene94604:CDS | 30.0% | |
| TTTATTCGTGAATGATGTGT+AGG | + | chr2.4:15120633-15120652 | MS.gene94604:intron | 30.0% | |
| !! | GTTTTGAACTTTTCGGATTT+TGG | + | chr2.4:15120537-15120556 | MS.gene94604:intron | 30.0% |
| !!! | GAGTTTTGATTGACTTCTTT+TGG | + | chr2.4:15121534-15121553 | MS.gene94604:intron | 30.0% |
| !!! | TGTTGTTTTTTGTTGAGAGT+AGG | + | chr2.4:15120826-15120845 | MS.gene94604:intron | 30.0% |
| !!! | TTCTGCAGAAGTAGTTTTTT+CGG | - | chr2.4:15121299-15121318 | None:intergenic | 30.0% |
| AAACTCTCCTAGAGAACTAA+TGG | + | chr2.4:15121927-15121946 | MS.gene94604:intron | 35.0% | |
| AAGTCTTCCATTGGATACAT+TGG | + | chr2.4:15120961-15120980 | MS.gene94604:CDS | 35.0% | |
| AATATCTGTTTCAACTGCAG+AGG | + | chr2.4:15121031-15121050 | MS.gene94604:CDS | 35.0% | |
| AATTACATAGTGTCACAGCT+AGG | - | chr2.4:15121080-15121099 | None:intergenic | 35.0% | |
| ACTTCTTCCAAGAAAAGAAG+AGG | + | chr2.4:15121226-15121245 | MS.gene94604:intron | 35.0% | |
| ATGTATACCCTAACTCATGA+TGG | - | chr2.4:15121419-15121438 | None:intergenic | 35.0% | |
| ATTGACGGGAAATTTGATGA+CGG | + | chr2.4:15122223-15122242 | MS.gene94604:CDS | 35.0% | |
| ATTGGATAAAGAGGTCCAAA+TGG | + | chr2.4:15120979-15120998 | MS.gene94604:CDS | 35.0% | |
| GCATGCAACTCAAAAACATT+CGG | - | chr2.4:15120860-15120879 | None:intergenic | 35.0% | |
| GTGATGTGGAAATAGAAGTA+AGG | + | chr2.4:15121506-15121525 | MS.gene94604:intron | 35.0% | |
| TATACGTCCATCATGAGTTA+GGG | + | chr2.4:15121409-15121428 | MS.gene94604:intron | 35.0% | |
| TCTATCATAAGTTGTGTCGA+TGG | - | chr2.4:15121734-15121753 | None:intergenic | 35.0% | |
| TTGAGAATGGAAAACTCCTT+CGG | + | chr2.4:15120918-15120937 | MS.gene94604:CDS | 35.0% | |
| ! | CAGGAATTTTGTGCTTTTGT+GGG | + | chr2.4:15120701-15120720 | MS.gene94604:CDS | 35.0% |
| ! | CCTTGTAAATCCTTTTCTTC+CGG | - | chr2.4:15120667-15120686 | None:intergenic | 35.0% |
| ! | TCAGGAATTTTGTGCTTTTG+TGG | + | chr2.4:15120700-15120719 | MS.gene94604:CDS | 35.0% |
| !! | ATCGAAAGCTTTATTGCACT+AGG | - | chr2.4:15121794-15121813 | None:intergenic | 35.0% |
| !! | TGATGACGGATATATAGTCA+CGG | + | chr2.4:15122237-15122256 | MS.gene94604:CDS | 35.0% |
| !!! | AATGTTTTTGAGTTGCATGC+TGG | + | chr2.4:15120860-15120879 | MS.gene94604:CDS | 35.0% |
| AAAAGAAGAGGATGTGCTCT+TGG | + | chr2.4:15121238-15121257 | MS.gene94604:intron | 40.0% | |
| AAGCACATAGGTGACTGTTT+GGG | + | chr2.4:15121842-15121861 | MS.gene94604:intron | 40.0% | |
| ACTAGTATGCAATCCATGCA+TGG | + | chr2.4:15121180-15121199 | MS.gene94604:CDS | 40.0% | |
| ATCCAATGGAAGACTTGAAC+AGG | - | chr2.4:15120957-15120976 | None:intergenic | 40.0% | |
| ATTTACTGCCACAAGCACAT+AGG | + | chr2.4:15121830-15121849 | MS.gene94604:intron | 40.0% | |
| CAAGGTGTGATCAAAGATTC+AGG | + | chr2.4:15120682-15120701 | MS.gene94604:CDS | 40.0% | |
| CCGGAAGAAAAGGATTTACA+AGG | + | chr2.4:15120664-15120683 | MS.gene94604:CDS | 40.0% | |
| CTATACGTCCATCATGAGTT+AGG | + | chr2.4:15121408-15121427 | MS.gene94604:intron | 40.0% | |
| GAATCAGGCAAGTAAATGGA+GGG | + | chr2.4:15120735-15120754 | MS.gene94604:intron | 40.0% | |
| TAATCCGGAGGACGTTTATT+AGG | - | chr2.4:15120890-15120909 | None:intergenic | 40.0% | |
| TAGTCCTAATAAACGTCCTC+CGG | + | chr2.4:15120883-15120902 | MS.gene94604:CDS | 40.0% | |
| TCAAGGTAAGTATAATCCGG+AGG | - | chr2.4:15120902-15120921 | None:intergenic | 40.0% | |
| TCAGTGCATGGAACAATTGA+CGG | + | chr2.4:15122208-15122227 | MS.gene94604:CDS | 40.0% | |
| TGAAGGATCTTCTTGCAACT+GGG | + | chr2.4:15120465-15120484 | MS.gene94604:CDS | 40.0% | |
| TGAGAATGGAAAACTCCTTC+GGG | + | chr2.4:15120919-15120938 | MS.gene94604:CDS | 40.0% | |
| TTGGGAGAGCTTATGGATAT+TGG | + | chr2.4:15121860-15121879 | MS.gene94604:intron | 40.0% | |
| ! | AGCACATCCTCTTCTTTTCT+TGG | - | chr2.4:15121236-15121255 | None:intergenic | 40.0% |
| ! | GAAGGAGTTTTCCATTCTCA+AGG | - | chr2.4:15120919-15120938 | None:intergenic | 40.0% |
| ! | GCTGTTTCCATTAGTTCTCT+AGG | - | chr2.4:15121937-15121956 | None:intergenic | 40.0% |
| ! | TGCTTTTGTGGGAGTTGTAA+GGG | + | chr2.4:15120712-15120731 | MS.gene94604:CDS | 40.0% |
| !! | GAACTTTTCGGATTTTGGTC+TGG | + | chr2.4:15120542-15120561 | MS.gene94604:intron | 40.0% |
| !!! | GCAGAAGTAGTTTTTTCGGA+AGG | - | chr2.4:15121295-15121314 | None:intergenic | 40.0% |
| AAAGAGGTCCAAATGGTCCT+GGG | + | chr2.4:15120986-15121005 | MS.gene94604:CDS | 45.0% | |
| AACAGTCACCTATGTGCTTG+TGG | - | chr2.4:15121841-15121860 | None:intergenic | 45.0% | |
| AGAAGATCCTTCAGCTTGAC+AGG | - | chr2.4:15120458-15120477 | None:intergenic | 45.0% | |
| AGAGGATGTGCTCTTGGTTT+CGG | + | chr2.4:15121244-15121263 | MS.gene94604:intron | 45.0% | |
| AGGGGAATCAGGCAAGTAAA+TGG | + | chr2.4:15120731-15120750 | MS.gene94604:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | - | chr2.4:15122181-15122200 | None:intergenic | 45.0% | |
| ATATATAGTCACGGTGGACC+TGG | + | chr2.4:15122246-15122265 | MS.gene94604:CDS | 45.0% | |
| ATTAGTCCAGCACAGACACT+CGG | + | chr2.4:15122181-15122200 | MS.gene94604:CDS | 45.0% | |
| CAAGCACATAGGTGACTGTT+TGG | + | chr2.4:15121841-15121860 | MS.gene94604:intron | 45.0% | |
| CAGTGCATGGAACAATTGAC+GGG | + | chr2.4:15122209-15122228 | MS.gene94604:CDS | 45.0% | |
| CTGAAGGATCTTCTTGCAAC+TGG | + | chr2.4:15120464-15120483 | MS.gene94604:CDS | 45.0% | |
| GAGATATGTCAAGGGACAGA+AGG | + | chr2.4:15120508-15120527 | MS.gene94604:CDS | 45.0% | |
| GAGTTGAAAGAGACTTCTGC+AGG | + | chr2.4:15121202-15121221 | MS.gene94604:intron | 45.0% | |
| GGAATCAGGCAAGTAAATGG+AGG | + | chr2.4:15120734-15120753 | MS.gene94604:intron | 45.0% | |
| GTCTCTTTCAACTCCATGCA+TGG | - | chr2.4:15121196-15121215 | None:intergenic | 45.0% | |
| GTGTGGGTTTAGCATCTTGT+AGG | + | chr2.4:15120779-15120798 | MS.gene94604:intron | 45.0% | |
| TAAAGAGGTCCAAATGGTCC+TGG | + | chr2.4:15120985-15121004 | MS.gene94604:CDS | 45.0% | |
| TATATAGTCACGGTGGACCT+GGG | + | chr2.4:15122247-15122266 | MS.gene94604:CDS | 45.0% | |
| TCTGCATTGTGAAATCACCC+AGG | - | chr2.4:15121006-15121025 | None:intergenic | 45.0% | |
| TCTTCTTGCAACTGGGATTC+TGG | + | chr2.4:15120472-15120491 | MS.gene94604:CDS | 45.0% | |
| TGAAATCACCCAGGACCATT+TGG | - | chr2.4:15120997-15121016 | None:intergenic | 45.0% | |
| TGACTGTTTGGGAGAGCTTA+TGG | + | chr2.4:15121853-15121872 | MS.gene94604:intron | 45.0% | |
| TGCCTGTTCAAGTCTTCCAT+TGG | + | chr2.4:15120952-15120971 | MS.gene94604:CDS | 45.0% | |
| ! | GCTTTTGTGGGAGTTGTAAG+GGG | + | chr2.4:15120713-15120732 | MS.gene94604:CDS | 45.0% |
| ! | GTGCTTTTGTGGGAGTTGTA+AGG | + | chr2.4:15120711-15120730 | MS.gene94604:CDS | 45.0% |
| ! | TGACGGATATATAGTCACGG+TGG | + | chr2.4:15122240-15122259 | MS.gene94604:CDS | 45.0% |
| ACACTCGGTTCTTCAGTGCA+TGG | + | chr2.4:15122196-15122215 | MS.gene94604:CDS | 50.0% | |
| AGGCATTCATGACATCCCGA+AGG | - | chr2.4:15120937-15120956 | None:intergenic | 50.0% | |
| CAGGCAAGTAAATGGAGGGA+TGG | + | chr2.4:15120739-15120758 | MS.gene94604:intron | 50.0% | |
| CTTGCAACTGGGATTCTGGA+GGG | + | chr2.4:15120476-15120495 | MS.gene94604:CDS | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | - | chr2.4:15122267-15122286 | None:intergenic | 50.0% | |
| GTGGTTTCCTGTCAAGCTGA+AGG | + | chr2.4:15120448-15120467 | MS.gene94604:CDS | 50.0% | |
| TCTTGCAACTGGGATTCTGG+AGG | + | chr2.4:15120475-15120494 | MS.gene94604:CDS | 50.0% | |
| TGATGTGTAGGCGCGTAAAC+CGG | + | chr2.4:15120645-15120664 | MS.gene94604:intron | 50.0% | |
| TGGGAGTTGTAAGGGGAATC+AGG | + | chr2.4:15120720-15120739 | MS.gene94604:CDS | 50.0% | |
| ! | TGAAGGGAGGTTCTGGTAAG+TGG | + | chr2.4:15120429-15120448 | MS.gene94604:CDS | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | + | chr2.4:15122265-15122284 | MS.gene94604:CDS | 50.0% |
| GAAGAACCGAGTGTCTGTGC+TGG | - | chr2.4:15122190-15122209 | None:intergenic | 55.0% | |
| GGCGCGTAAACCGGAAGAAA+AGG | + | chr2.4:15120654-15120673 | MS.gene94604:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 15120428 | 15122306 | 15120428 | ID=MS.gene94604 |
| chr2.4 | mRNA | 15120428 | 15122306 | 15120428 | ID=MS.gene94604.t1;Parent=MS.gene94604 |
| chr2.4 | exon | 15120428 | 15120529 | 15120428 | ID=MS.gene94604.t1.exon1;Parent=MS.gene94604.t1 |
| chr2.4 | CDS | 15120428 | 15120529 | 15120428 | ID=cds.MS.gene94604.t1;Parent=MS.gene94604.t1 |
| chr2.4 | exon | 15120655 | 15120741 | 15120655 | ID=MS.gene94604.t1.exon2;Parent=MS.gene94604.t1 |
| chr2.4 | CDS | 15120655 | 15120741 | 15120655 | ID=cds.MS.gene94604.t1;Parent=MS.gene94604.t1 |
| chr2.4 | exon | 15120848 | 15121052 | 15120848 | ID=MS.gene94604.t1.exon3;Parent=MS.gene94604.t1 |
| chr2.4 | CDS | 15120848 | 15121052 | 15120848 | ID=cds.MS.gene94604.t1;Parent=MS.gene94604.t1 |
| chr2.4 | exon | 15121146 | 15121203 | 15121146 | ID=MS.gene94604.t1.exon4;Parent=MS.gene94604.t1 |
| chr2.4 | CDS | 15121146 | 15121203 | 15121146 | ID=cds.MS.gene94604.t1;Parent=MS.gene94604.t1 |
| chr2.4 | exon | 15121246 | 15121340 | 15121246 | ID=MS.gene94604.t1.exon5;Parent=MS.gene94604.t1 |
| chr2.4 | CDS | 15121246 | 15121340 | 15121246 | ID=cds.MS.gene94604.t1;Parent=MS.gene94604.t1 |
| chr2.4 | exon | 15122173 | 15122306 | 15122173 | ID=MS.gene94604.t1.exon6;Parent=MS.gene94604.t1 |
| chr2.4 | CDS | 15122173 | 15122306 | 15122173 | ID=cds.MS.gene94604.t1;Parent=MS.gene94604.t1 |
| Gene Sequence |
| Protein sequence |
