Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94928.t1 | PNX79674.1 | 77.5 | 360 | 79 | 1 | 1 | 360 | 58 | 415 | 3.80E-147 | 531.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94928.t1 | A0A2K3LMC2 | 77.5 | 360 | 79 | 1 | 1 | 360 | 58 | 415 | 2.8e-147 | 531.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049404 | MS.gene94928 | 0.800084 | 1.70E-48 | -1.69E-46 |
| MS.gene050020 | MS.gene94928 | 0.848746 | 5.04E-60 | -1.69E-46 |
| MS.gene050780 | MS.gene94928 | 0.813844 | 2.08E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene94928 | 0.844324 | 8.11E-59 | -1.69E-46 |
| MS.gene050808 | MS.gene94928 | 0.814886 | 1.23E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene94928 | 0.800548 | 1.37E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene94928 | 0.802545 | 5.33E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene94928 | 0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene94928 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene94928 | 0.811625 | 6.37E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene94928 | 0.809608 | 1.74E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene94928 | 0.82617 | 3.14E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene94928 | 0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene94928 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene94928 | 0.812144 | 4.92E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene94928 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene94928 | 0.805675 | 1.19E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene94928 | 0.811697 | 6.15E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene94928 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene94928 | 0.805116 | 1.56E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene94928 | 0.805109 | 1.56E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene94928 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene94928 | 0.822287 | 2.57E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene94928 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene94928 | 0.84108 | 5.90E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94928.t1 | MTR_3g058570 | 72.800 | 375 | 87 | 2 | 1 | 360 | 1 | 375 | 0.0 | 533 |
| MS.gene94928.t1 | MTR_5g085340 | 49.871 | 389 | 164 | 3 | 2 | 360 | 348 | 735 | 5.30e-120 | 364 |
| MS.gene94928.t1 | MTR_5g085350 | 50.802 | 374 | 168 | 5 | 2 | 363 | 348 | 717 | 3.20e-116 | 353 |
| MS.gene94928.t1 | MTR_5g085350 | 50.646 | 387 | 162 | 6 | 2 | 363 | 348 | 730 | 6.20e-114 | 348 |
| MS.gene94928.t1 | MTR_3g051060 | 47.368 | 380 | 178 | 7 | 1 | 363 | 354 | 728 | 5.81e-110 | 338 |
| MS.gene94928.t1 | MTR_5g085360 | 43.719 | 398 | 172 | 9 | 2 | 363 | 348 | 729 | 2.11e-95 | 300 |
| MS.gene94928.t1 | MTR_2g020510 | 41.274 | 361 | 194 | 5 | 2 | 359 | 330 | 675 | 2.17e-83 | 267 |
| MS.gene94928.t1 | MTR_3g050500 | 45.246 | 305 | 156 | 4 | 65 | 363 | 424 | 723 | 2.20e-77 | 252 |
| MS.gene94928.t1 | MTR_2g020470 | 40.828 | 338 | 165 | 5 | 23 | 359 | 354 | 657 | 9.64e-74 | 241 |
| MS.gene94928.t1 | MTR_2g020450 | 43.692 | 325 | 166 | 5 | 45 | 359 | 360 | 677 | 1.46e-72 | 239 |
| MS.gene94928.t1 | MTR_2g438740 | 34.395 | 314 | 191 | 5 | 53 | 360 | 259 | 563 | 6.51e-45 | 162 |
| MS.gene94928.t1 | MTR_3g055310 | 32.484 | 314 | 203 | 4 | 52 | 363 | 40 | 346 | 1.81e-44 | 157 |
| MS.gene94928.t1 | MTR_3g055310 | 32.484 | 314 | 203 | 4 | 52 | 363 | 103 | 409 | 5.43e-44 | 157 |
| MS.gene94928.t1 | MTR_2g017930 | 38.356 | 292 | 165 | 5 | 69 | 357 | 359 | 638 | 7.48e-44 | 160 |
| MS.gene94928.t1 | MTR_3g055310 | 32.484 | 314 | 203 | 4 | 52 | 363 | 155 | 461 | 1.33e-43 | 157 |
| MS.gene94928.t1 | MTR_3g055310 | 32.484 | 314 | 203 | 4 | 52 | 363 | 183 | 489 | 2.13e-43 | 157 |
| MS.gene94928.t1 | MTR_3g055310 | 32.484 | 314 | 203 | 4 | 52 | 363 | 181 | 487 | 2.31e-43 | 157 |
| MS.gene94928.t1 | MTR_3g055310 | 32.484 | 314 | 203 | 4 | 52 | 363 | 208 | 514 | 5.10e-43 | 156 |
| MS.gene94928.t1 | MTR_2g438440 | 35.473 | 296 | 178 | 6 | 69 | 360 | 396 | 682 | 6.32e-43 | 158 |
| MS.gene94928.t1 | MTR_5g028190 | 33.333 | 306 | 195 | 5 | 60 | 361 | 229 | 529 | 8.05e-42 | 153 |
| MS.gene94928.t1 | MTR_5g091220 | 34.014 | 294 | 184 | 4 | 69 | 360 | 313 | 598 | 8.21e-42 | 154 |
| MS.gene94928.t1 | MTR_2g438400 | 33.220 | 295 | 186 | 5 | 69 | 360 | 255 | 541 | 1.49e-41 | 153 |
| MS.gene94928.t1 | MTR_5g028130 | 32.131 | 305 | 202 | 4 | 60 | 361 | 31 | 333 | 5.32e-41 | 147 |
| MS.gene94928.t1 | MTR_3g455790 | 31.157 | 337 | 216 | 6 | 18 | 349 | 256 | 581 | 2.42e-39 | 147 |
| MS.gene94928.t1 | MTR_2g438720 | 34.437 | 302 | 184 | 9 | 64 | 360 | 396 | 688 | 1.91e-38 | 145 |
| MS.gene94928.t1 | MTR_2g438700 | 34.098 | 305 | 181 | 10 | 64 | 360 | 394 | 686 | 4.23e-38 | 145 |
| MS.gene94928.t1 | MTR_5g028450 | 34.884 | 301 | 179 | 7 | 69 | 361 | 1 | 292 | 1.15e-37 | 137 |
| MS.gene94928.t1 | MTR_2g438640 | 32.781 | 302 | 188 | 8 | 64 | 360 | 396 | 687 | 4.31e-36 | 139 |
| MS.gene94928.t1 | MTR_3g452020 | 28.280 | 343 | 226 | 6 | 8 | 345 | 76 | 403 | 8.03e-34 | 130 |
| MS.gene94928.t1 | MTR_2g438640 | 32.119 | 302 | 164 | 8 | 64 | 360 | 396 | 661 | 2.05e-33 | 131 |
| MS.gene94928.t1 | MTR_3g452020 | 28.280 | 343 | 226 | 6 | 8 | 345 | 252 | 579 | 6.44e-33 | 129 |
| MS.gene94928.t1 | MTR_6g017215 | 34.595 | 185 | 120 | 1 | 174 | 358 | 6 | 189 | 1.84e-31 | 119 |
| MS.gene94928.t1 | MTR_2g438760 | 29.530 | 298 | 189 | 8 | 72 | 360 | 273 | 558 | 2.35e-29 | 119 |
| MS.gene94928.t1 | MTR_5g028930 | 33.333 | 258 | 152 | 4 | 69 | 318 | 321 | 566 | 2.66e-29 | 119 |
| MS.gene94928.t1 | MTR_2g438640 | 37.705 | 183 | 110 | 4 | 179 | 360 | 405 | 584 | 6.11e-28 | 115 |
| MS.gene94928.t1 | MTR_5g028690 | 38.514 | 148 | 91 | 0 | 174 | 321 | 41 | 188 | 2.78e-23 | 97.4 |
| MS.gene94928.t1 | MTR_5g028110 | 33.793 | 145 | 93 | 3 | 218 | 361 | 28 | 170 | 1.20e-18 | 82.8 |
| MS.gene94928.t1 | MTR_5g028900 | 35.211 | 142 | 80 | 3 | 189 | 330 | 17 | 146 | 3.03e-18 | 81.3 |
| MS.gene94928.t1 | MTR_5g028840 | 33.121 | 157 | 104 | 1 | 174 | 329 | 2 | 158 | 2.42e-16 | 77.0 |
| MS.gene94928.t1 | MTR_2g438580 | 44.304 | 79 | 43 | 1 | 189 | 267 | 3 | 80 | 5.92e-16 | 72.8 |
| MS.gene94928.t1 | MTR_2g438470 | 38.400 | 125 | 70 | 5 | 130 | 250 | 376 | 497 | 9.35e-16 | 79.0 |
| MS.gene94928.t1 | MTR_1g113760 | 27.778 | 306 | 206 | 9 | 62 | 360 | 234 | 531 | 9.50e-16 | 79.0 |
| MS.gene94928.t1 | MTR_1g113730 | 23.913 | 230 | 167 | 3 | 55 | 283 | 32 | 254 | 6.63e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94928.t1 | AT5G04730 | 37.308 | 260 | 150 | 4 | 113 | 360 | 327 | 585 | 2.97e-41 | 153 |
| MS.gene94928.t1 | AT3G18670 | 34.333 | 300 | 186 | 7 | 65 | 361 | 290 | 581 | 2.24e-40 | 150 |
| MS.gene94928.t1 | AT3G18670 | 34.333 | 300 | 186 | 7 | 65 | 361 | 345 | 636 | 2.64e-40 | 150 |
| MS.gene94928.t1 | AT5G35810 | 32.039 | 309 | 174 | 8 | 72 | 361 | 38 | 329 | 2.49e-39 | 143 |
| MS.gene94928.t1 | AT5G04700 | 33.968 | 315 | 194 | 6 | 54 | 360 | 344 | 652 | 1.57e-35 | 137 |
| MS.gene94928.t1 | AT3G54065 | 42.683 | 164 | 88 | 1 | 161 | 318 | 9 | 172 | 1.97e-35 | 129 |
| MS.gene94928.t1 | AT5G04690 | 34.661 | 251 | 149 | 5 | 123 | 360 | 360 | 608 | 7.86e-34 | 132 |
| MS.gene94928.t1 | AT5G04690 | 34.661 | 251 | 149 | 5 | 123 | 360 | 380 | 628 | 1.05e-33 | 132 |
| MS.gene94928.t1 | AT5G04690 | 34.661 | 251 | 149 | 5 | 123 | 360 | 394 | 642 | 1.11e-33 | 132 |
| MS.gene94928.t1 | AT5G04680 | 32.602 | 319 | 191 | 8 | 54 | 355 | 208 | 519 | 1.62e-28 | 116 |
| MS.gene94928.t1 | AT5G04680 | 32.099 | 324 | 196 | 8 | 54 | 360 | 331 | 647 | 2.08e-28 | 117 |
| MS.gene94928.t1 | AT5G04680 | 32.099 | 324 | 196 | 8 | 54 | 360 | 317 | 633 | 2.37e-28 | 116 |
| MS.gene94928.t1 | AT5G04680 | 32.099 | 324 | 196 | 8 | 54 | 360 | 360 | 676 | 2.55e-28 | 116 |
Find 73 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTCTTGGACATATTTA+TGG | 0.160673 | 3.1:+44120135 | MS.gene94928:CDS |
| TAGATACCTTGCTCTTGATT+TGG | 0.241578 | 3.1:-44120241 | None:intergenic |
| CAAGATTAGAACCAACAAAA+AGG | 0.260282 | 3.1:+44121409 | MS.gene94928:CDS |
| AGATACCTTGCTCTTGATTT+GGG | 0.276702 | 3.1:-44120240 | None:intergenic |
| CTTTATCAACCTCTTGGATT+AGG | 0.289985 | 3.1:-44120890 | None:intergenic |
| TTCCAAGTCAACTTCATATA+GGG | 0.290505 | 3.1:-44120763 | None:intergenic |
| CTGTTGAGGAATTAAGAAAA+TGG | 0.305580 | 3.1:+44120832 | MS.gene94928:CDS |
| GGCAGTGAACATTGCAATAA+TGG | 0.312232 | 3.1:-44121786 | None:intergenic |
| GATGAAGATTTGAACATTCC+TGG | 0.321602 | 3.1:+44120951 | MS.gene94928:CDS |
| ATTTCTTGCTGCAGTCAAAA+TGG | 0.335855 | 3.1:-44120694 | None:intergenic |
| TTTCCAAGTCAACTTCATAT+AGG | 0.340868 | 3.1:-44120764 | None:intergenic |
| CAAATCATTTCTGAAATCTC+TGG | 0.342850 | 3.1:-44121723 | None:intergenic |
| TCCCTTCTTTATCAACCTCT+TGG | 0.343304 | 3.1:-44120896 | None:intergenic |
| AAGAAGTGGTTGCATAAATT+AGG | 0.344306 | 3.1:-44121862 | None:intergenic |
| TTTGCTCTGTCATCGTTAAT+CGG | 0.353195 | 3.1:+44121638 | MS.gene94928:CDS |
| ACTACCCTCTTTCACTAATT+CGG | 0.373632 | 3.1:-44121468 | None:intergenic |
| ATGTTCACTGCCTTCTGCTC+TGG | 0.379997 | 3.1:+44121797 | MS.gene94928:CDS |
| TGCTGCATCAAGCACTGTGC+CGG | 0.384307 | 3.1:+44121556 | MS.gene94928:CDS |
| GTTGTAGCAGCACTCCTTGC+CGG | 0.389174 | 3.1:+44121524 | MS.gene94928:CDS |
| ACTCACATCTCGTATTGGTT+TGG | 0.399814 | 3.1:-44120191 | None:intergenic |
| GGTGGCAACAGAAGCGAAAC+AGG | 0.406661 | 3.1:+44121578 | MS.gene94928:CDS |
| AGATGAAGCAAAAGCACAAA+TGG | 0.424240 | 3.1:+44120107 | None:intergenic |
| CCCTGTGACTTTGTATGCAA+TGG | 0.430874 | 3.1:+44121886 | MS.gene94928:CDS |
| GTTCTAATCTTGAAATGCTC+TGG | 0.444737 | 3.1:-44121398 | None:intergenic |
| GTTCCACTCACATCTCGTAT+TGG | 0.445375 | 3.1:-44120196 | None:intergenic |
| GAATCCTTATGAATCGTACT+TGG | 0.447582 | 3.1:+44120159 | MS.gene94928:CDS |
| CAAATGGAGTGGTCAACTCT+TGG | 0.447992 | 3.1:+44120123 | MS.gene94928:CDS |
| AGAAATGTTTGTGTCTTCAC+TGG | 0.452690 | 3.1:-44120649 | None:intergenic |
| AATCCCACAAGAAGTTTCCT+TGG | 0.465377 | 3.1:-44121746 | None:intergenic |
| ATCCAAGAGGTTGATAAAGA+AGG | 0.473996 | 3.1:+44120894 | MS.gene94928:CDS |
| GCAGGCTTTCCTTCCAATGT+TGG | 0.475852 | 3.1:-44121605 | None:intergenic |
| ATCATTTGCAAGGCAGCTCC+AGG | 0.481063 | 3.1:-44120969 | None:intergenic |
| CACAAACATTTCTGAAACAA+AGG | 0.489247 | 3.1:+44120659 | MS.gene94928:CDS |
| TCAAGAAGATCAATGTAAAG+TGG | 0.494589 | 3.1:-44121917 | None:intergenic |
| TTCGAGAAGTGAGTATAGAA+AGG | 0.498713 | 3.1:-44121694 | None:intergenic |
| GCTGCATCAAGCACTGTGCC+GGG | 0.500343 | 3.1:+44121557 | MS.gene94928:CDS |
| AAAGAAATTGCCAGAGCAGA+AGG | 0.504129 | 3.1:-44121807 | None:intergenic |
| TTCCCTATATGAAGTTGACT+TGG | 0.504571 | 3.1:+44120761 | MS.gene94928:CDS |
| TCAACTTCATATAGGGAACT+TGG | 0.506531 | 3.1:-44120756 | None:intergenic |
| GCCATTGCATACAAAGTCAC+AGG | 0.510913 | 3.1:-44121887 | None:intergenic |
| TCCAAGAGGTTGATAAAGAA+GGG | 0.510966 | 3.1:+44120895 | MS.gene94928:CDS |
| TATGAATCGTACTTGGGATC+CGG | 0.512116 | 3.1:+44120166 | MS.gene94928:CDS |
| ATCTCGTATTGGTTTGGCGC+CGG | 0.516144 | 3.1:-44120185 | None:intergenic |
| TTCTGAAACAAAGGAAAATG+AGG | 0.518920 | 3.1:+44120668 | MS.gene94928:CDS |
| TTGCCAAGGAAACTTCTTGT+GGG | 0.520830 | 3.1:+44121743 | MS.gene94928:CDS |
| CGAAACAGGTGAACCAACAT+TGG | 0.523202 | 3.1:+44121592 | MS.gene94928:CDS |
| GATCCCAAGTACGATTCATA+AGG | 0.527038 | 3.1:-44120163 | None:intergenic |
| ACTTTACATTGATCTTCTTG+AGG | 0.543568 | 3.1:+44121919 | MS.gene94928:CDS |
| CACAGTGCTTGATGCAGCAA+AGG | 0.545307 | 3.1:-44121552 | None:intergenic |
| GCATGCCGAATTAGTGAAAG+AGG | 0.548391 | 3.1:+44121463 | MS.gene94928:CDS |
| ATTTCAGAAATGATTTGCCA+AGG | 0.551503 | 3.1:+44121729 | MS.gene94928:CDS |
| GTTTCGCTTCTGTTGCCACC+CGG | 0.555784 | 3.1:-44121575 | None:intergenic |
| AGAGCAAATGCATCAAATGC+AGG | 0.556184 | 3.1:-44121623 | None:intergenic |
| ACAGGTGAACCAACATTGGA+AGG | 0.573107 | 3.1:+44121596 | MS.gene94928:CDS |
| CAAGAGAATCACATCTGTTG+AGG | 0.583357 | 3.1:+44120818 | MS.gene94928:CDS |
| GCTATTCCACATCATTTGCA+AGG | 0.586289 | 3.1:-44120979 | None:intergenic |
| TTTGCCAAGGAAACTTCTTG+TGG | 0.590940 | 3.1:+44121742 | MS.gene94928:CDS |
| TGATGCAGCAAAGGAAACGC+CGG | 0.595058 | 3.1:-44121543 | None:intergenic |
| CAGCAAAGGAAACGCCGGCA+AGG | 0.596873 | 3.1:-44121538 | None:intergenic |
| GAGCTGCCTTGCAAATGATG+TGG | 0.597239 | 3.1:+44120973 | MS.gene94928:CDS |
| TACAACCCAAATCAAGAGCA+AGG | 0.601249 | 3.1:+44120235 | MS.gene94928:CDS |
| AATCCTTATGAATCGTACTT+GGG | 0.615940 | 3.1:+44120160 | MS.gene94928:CDS |
| TAGTGAAAGAGGGTAGTACA+TGG | 0.621718 | 3.1:+44121474 | MS.gene94928:CDS |
| ATTTGATCGCCTAATCCAAG+AGG | 0.622486 | 3.1:+44120881 | MS.gene94928:CDS |
| AGAGGGTAGTACATGGCTGA+AGG | 0.627756 | 3.1:+44121481 | MS.gene94928:CDS |
| CAAAGTCACAGGGAAAGAAG+TGG | 0.636128 | 3.1:-44121876 | None:intergenic |
| ACCATGGATCAGTATACAGA+AGG | 0.646060 | 3.1:+44121368 | MS.gene94928:intron |
| AAGCAAAAGCACAAATGGAG+TGG | 0.647330 | 3.1:+44120112 | MS.gene94928:CDS |
| CCATTGCATACAAAGTCACA+GGG | 0.652769 | 3.1:-44121886 | None:intergenic |
| AAACCAATACGAGATGTGAG+TGG | 0.666256 | 3.1:+44120193 | MS.gene94928:CDS |
| GCATCAAGCACTGTGCCGGG+TGG | 0.679464 | 3.1:+44121560 | MS.gene94928:CDS |
| CATGCCGAATTAGTGAAAGA+GGG | 0.688801 | 3.1:+44121464 | MS.gene94928:CDS |
| TGAACATAGGTACAAACACA+TGG | 0.690940 | 3.1:+44121835 | MS.gene94928:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACTTATAATATAAAC+AGG | + | chr3.1:44120384-44120403 | MS.gene94928:intron | 10.0% |
| !! | AAATAAAAATGTATTACTTG+TGG | + | chr3.1:44120785-44120804 | MS.gene94928:CDS | 15.0% |
| !! | CTAAATTTAGATGAATAAAA+GGG | + | chr3.1:44120300-44120319 | MS.gene94928:intron | 15.0% |
| !! | TAAAATGTATCAAATCAATT+TGG | - | chr3.1:44120419-44120438 | None:intergenic | 15.0% |
| !! | ATTAGATTAAACGTCTAAAT+TGG | - | chr3.1:44120463-44120482 | None:intergenic | 20.0% |
| !! | CAGTGTATTTAACATATTAT+TGG | + | chr3.1:44120579-44120598 | MS.gene94928:intron | 20.0% |
| !! | GCTAAATTTAGATGAATAAA+AGG | + | chr3.1:44120299-44120318 | MS.gene94928:intron | 20.0% |
| !! | TCTCAACTACAAAATATTTA+TGG | + | chr3.1:44120518-44120537 | MS.gene94928:intron | 20.0% |
| !!! | AAGATCTTCGAAATAAATTT+TGG | + | chr3.1:44121102-44121121 | MS.gene94928:intron | 20.0% |
| !!! | ATCTTATTTTGTACAAGTTT+GGG | - | chr3.1:44121087-44121106 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTTGATTGAACAT+AGG | + | chr3.1:44121822-44121841 | MS.gene94928:CDS | 20.0% |
| !!! | TAAATAAACTCTGAGATTTT+GGG | - | chr3.1:44121257-44121276 | None:intergenic | 20.0% |
| !!! | TTAAATAAACTCTGAGATTT+TGG | - | chr3.1:44121258-44121277 | None:intergenic | 20.0% |
| ! | AAGATTAGAACCAACAAAAA+GGG | + | chr3.1:44121410-44121429 | MS.gene94928:CDS | 25.0% |
| ! | AGGTATCTAAATCATTTAAG+TGG | + | chr3.1:44120255-44120274 | MS.gene94928:intron | 25.0% |
| ! | TATCTAAATCATTTAAGTGG+TGG | + | chr3.1:44120258-44120277 | MS.gene94928:intron | 25.0% |
| !! | TAGTATTTTCTCTTTCATCA+GGG | - | chr3.1:44121170-44121189 | None:intergenic | 25.0% |
| !! | TTAGTATTTTCTCTTTCATC+AGG | - | chr3.1:44121171-44121190 | None:intergenic | 25.0% |
| !!! | GATCTTATTTTGTACAAGTT+TGG | - | chr3.1:44121088-44121107 | None:intergenic | 25.0% |
| !!! | TATTTTGGATAGACAAATGT+TGG | - | chr3.1:44121209-44121228 | None:intergenic | 25.0% |
| AAATATTTACACATGCACAG+TGG | - | chr3.1:44120549-44120568 | None:intergenic | 30.0% | |
| AAGAAGTGGTTGCATAAATT+AGG | - | chr3.1:44121865-44121884 | None:intergenic | 30.0% | |
| AATCCTTATGAATCGTACTT+GGG | + | chr3.1:44120160-44120179 | MS.gene94928:CDS | 30.0% | |
| ACTTTACATTGATCTTCTTG+AGG | + | chr3.1:44121919-44121938 | MS.gene94928:CDS | 30.0% | |
| ATAGCAAAAATGAAACTTGC+AGG | + | chr3.1:44120618-44120637 | MS.gene94928:intron | 30.0% | |
| CAAGATTAGAACCAACAAAA+AGG | + | chr3.1:44121409-44121428 | MS.gene94928:CDS | 30.0% | |
| CTGTTGAGGAATTAAGAAAA+TGG | + | chr3.1:44120832-44120851 | MS.gene94928:CDS | 30.0% | |
| GTCAATAAGAATCGAGTATT+TGG | + | chr3.1:44120344-44120363 | MS.gene94928:intron | 30.0% | |
| TCAACTCTTGGACATATTTA+TGG | + | chr3.1:44120135-44120154 | MS.gene94928:CDS | 30.0% | |
| TCAAGAAGATCAATGTAAAG+TGG | - | chr3.1:44121920-44121939 | None:intergenic | 30.0% | |
| TTCCAAGTCAACTTCATATA+GGG | - | chr3.1:44120766-44120785 | None:intergenic | 30.0% | |
| TTTCCAAGTCAACTTCATAT+AGG | - | chr3.1:44120767-44120786 | None:intergenic | 30.0% | |
| ! | ATTTCAGAAATGATTTGCCA+AGG | + | chr3.1:44121729-44121748 | MS.gene94928:CDS | 30.0% |
| !! | ATGGTGCAAAAGTAGTTTTA+AGG | - | chr3.1:44121353-44121372 | None:intergenic | 30.0% |
| !! | CAAATCATTTCTGAAATCTC+TGG | - | chr3.1:44121726-44121745 | None:intergenic | 30.0% |
| !! | CACAAACATTTCTGAAACAA+AGG | + | chr3.1:44120659-44120678 | MS.gene94928:CDS | 30.0% |
| !! | TTAAAACTACTTTTGCACCA+TGG | + | chr3.1:44121352-44121371 | MS.gene94928:intron | 30.0% |
| !! | TTCTGAAACAAAGGAAAATG+AGG | + | chr3.1:44120668-44120687 | MS.gene94928:CDS | 30.0% |
| !! | TTGGTATTTTTGCTATAAGC+TGG | - | chr3.1:44120740-44120759 | None:intergenic | 30.0% |
| !!! | GGACGAGCTTATTTTTATTT+TGG | - | chr3.1:44121224-44121243 | None:intergenic | 30.0% |
| !!! | TGGTGCAAAAGTAGTTTTAA+GGG | - | chr3.1:44121352-44121371 | None:intergenic | 30.0% |
| AATCATTTAAGTGGTGGCTT+TGG | + | chr3.1:44120264-44120283 | MS.gene94928:intron | 35.0% | |
| ACTACCCTCTTTCACTAATT+CGG | - | chr3.1:44121471-44121490 | None:intergenic | 35.0% | |
| AGAAATGTTTGTGTCTTCAC+TGG | - | chr3.1:44120652-44120671 | None:intergenic | 35.0% | |
| AGATACCTTGCTCTTGATTT+GGG | - | chr3.1:44120243-44120262 | None:intergenic | 35.0% | |
| ATTTCTTGCTGCAGTCAAAA+TGG | - | chr3.1:44120697-44120716 | None:intergenic | 35.0% | |
| CAACAAAAAGGGTAAAACAG+CGG | + | chr3.1:44121421-44121440 | MS.gene94928:CDS | 35.0% | |
| CTTTATCAACCTCTTGGATT+AGG | - | chr3.1:44120893-44120912 | None:intergenic | 35.0% | |
| GAATCCTTATGAATCGTACT+TGG | + | chr3.1:44120159-44120178 | MS.gene94928:CDS | 35.0% | |
| GATGAAGATTTGAACATTCC+TGG | + | chr3.1:44120951-44120970 | MS.gene94928:CDS | 35.0% | |
| GTTCTAATCTTGAAATGCTC+TGG | - | chr3.1:44121401-44121420 | None:intergenic | 35.0% | |
| TAACCATTAGCTCAAACTAG+TGG | - | chr3.1:44121134-44121153 | None:intergenic | 35.0% | |
| TAGATACCTTGCTCTTGATT+TGG | - | chr3.1:44120244-44120263 | None:intergenic | 35.0% | |
| TCAACTTCATATAGGGAACT+TGG | - | chr3.1:44120759-44120778 | None:intergenic | 35.0% | |
| TGAACATAGGTACAAACACA+TGG | + | chr3.1:44121835-44121854 | MS.gene94928:CDS | 35.0% | |
| TTCCCTATATGAAGTTGACT+TGG | + | chr3.1:44120761-44120780 | MS.gene94928:CDS | 35.0% | |
| TTCGAGAAGTGAGTATAGAA+AGG | - | chr3.1:44121697-44121716 | None:intergenic | 35.0% | |
| TTTGCTCTGTCATCGTTAAT+CGG | + | chr3.1:44121638-44121657 | MS.gene94928:CDS | 35.0% | |
| ! | GTGGAATAGCAAATGTTTTC+AGG | + | chr3.1:44120992-44121011 | MS.gene94928:CDS | 35.0% |
| ! | TCGATTCTTATTGACTGTCA+CGG | - | chr3.1:44120339-44120358 | None:intergenic | 35.0% |
| !! | ATCCAAGAGGTTGATAAAGA+AGG | + | chr3.1:44120894-44120913 | MS.gene94928:CDS | 35.0% |
| !! | TCCAAGAGGTTGATAAAGAA+GGG | + | chr3.1:44120895-44120914 | MS.gene94928:CDS | 35.0% |
| !!! | ATTTTGACTGCAGCAAGAAA+TGG | + | chr3.1:44120696-44120715 | MS.gene94928:CDS | 35.0% |
| AAACCAATACGAGATGTGAG+TGG | + | chr3.1:44120193-44120212 | MS.gene94928:CDS | 40.0% | |
| AAAGAAATTGCCAGAGCAGA+AGG | - | chr3.1:44121810-44121829 | None:intergenic | 40.0% | |
| AATCCCACAAGAAGTTTCCT+TGG | - | chr3.1:44121749-44121768 | None:intergenic | 40.0% | |
| ACCATGGATCAGTATACAGA+AGG | + | chr3.1:44121368-44121387 | MS.gene94928:intron | 40.0% | |
| AGAGCAAATGCATCAAATGC+AGG | - | chr3.1:44121626-44121645 | None:intergenic | 40.0% | |
| ATTTGATCGCCTAATCCAAG+AGG | + | chr3.1:44120881-44120900 | MS.gene94928:CDS | 40.0% | |
| CAAGAGAATCACATCTGTTG+AGG | + | chr3.1:44120818-44120837 | MS.gene94928:CDS | 40.0% | |
| CATGCCGAATTAGTGAAAGA+GGG | + | chr3.1:44121464-44121483 | MS.gene94928:CDS | 40.0% | |
| CCATTGCATACAAAGTCACA+GGG | - | chr3.1:44121889-44121908 | None:intergenic | 40.0% | |
| GATCCCAAGTACGATTCATA+AGG | - | chr3.1:44120166-44120185 | None:intergenic | 40.0% | |
| GCTATTCCACATCATTTGCA+AGG | - | chr3.1:44120982-44121001 | None:intergenic | 40.0% | |
| GGCAGTGAACATTGCAATAA+TGG | - | chr3.1:44121789-44121808 | None:intergenic | 40.0% | |
| TACAACCCAAATCAAGAGCA+AGG | + | chr3.1:44120235-44120254 | MS.gene94928:CDS | 40.0% | |
| TAGTGAAAGAGGGTAGTACA+TGG | + | chr3.1:44121474-44121493 | MS.gene94928:CDS | 40.0% | |
| TATGAATCGTACTTGGGATC+CGG | + | chr3.1:44120166-44120185 | MS.gene94928:CDS | 40.0% | |
| TCCCTTCTTTATCAACCTCT+TGG | - | chr3.1:44120899-44120918 | None:intergenic | 40.0% | |
| TCCTTCTGTATACTGATCCA+TGG | - | chr3.1:44121372-44121391 | None:intergenic | 40.0% | |
| TTGCCAAGGAAACTTCTTGT+GGG | + | chr3.1:44121743-44121762 | MS.gene94928:CDS | 40.0% | |
| TTTGCCAAGGAAACTTCTTG+TGG | + | chr3.1:44121742-44121761 | MS.gene94928:CDS | 40.0% | |
| ! | AAGCAAAAGCACAAATGGAG+TGG | + | chr3.1:44120112-44120131 | MS.gene94928:CDS | 40.0% |
| !! | ACTCACATCTCGTATTGGTT+TGG | - | chr3.1:44120194-44120213 | None:intergenic | 40.0% |
| !! | CGCTGTTTTACCCTTTTTGT+TGG | - | chr3.1:44121423-44121442 | None:intergenic | 40.0% |
| !! | GAGATTTTGGGTGCGTTTAT+TGG | - | chr3.1:44121245-44121264 | None:intergenic | 40.0% |
| ACAGGTGAACCAACATTGGA+AGG | + | chr3.1:44121596-44121615 | MS.gene94928:CDS | 45.0% | |
| CAAAGTCACAGGGAAAGAAG+TGG | - | chr3.1:44121879-44121898 | None:intergenic | 45.0% | |
| CAAATGGAGTGGTCAACTCT+TGG | + | chr3.1:44120123-44120142 | MS.gene94928:CDS | 45.0% | |
| CCCTGTGACTTTGTATGCAA+TGG | + | chr3.1:44121886-44121905 | MS.gene94928:CDS | 45.0% | |
| CGAAACAGGTGAACCAACAT+TGG | + | chr3.1:44121592-44121611 | MS.gene94928:CDS | 45.0% | |
| GCATGCCGAATTAGTGAAAG+AGG | + | chr3.1:44121463-44121482 | MS.gene94928:CDS | 45.0% | |
| GCCATTGCATACAAAGTCAC+AGG | - | chr3.1:44121890-44121909 | None:intergenic | 45.0% | |
| GTTCCACTCACATCTCGTAT+TGG | - | chr3.1:44120199-44120218 | None:intergenic | 45.0% | |
| ! | GCTCCACTAGTTTGAGCTAA+TGG | + | chr3.1:44121128-44121147 | MS.gene94928:intron | 45.0% |
| AGAGGGTAGTACATGGCTGA+AGG | + | chr3.1:44121481-44121500 | MS.gene94928:CDS | 50.0% | |
| ATCATTTGCAAGGCAGCTCC+AGG | - | chr3.1:44120972-44120991 | None:intergenic | 50.0% | |
| ATGTTCACTGCCTTCTGCTC+TGG | + | chr3.1:44121797-44121816 | MS.gene94928:CDS | 50.0% | |
| CACAGTGCTTGATGCAGCAA+AGG | - | chr3.1:44121555-44121574 | None:intergenic | 50.0% | |
| GAGCTGCCTTGCAAATGATG+TGG | + | chr3.1:44120973-44120992 | MS.gene94928:CDS | 50.0% | |
| GCAGGCTTTCCTTCCAATGT+TGG | - | chr3.1:44121608-44121627 | None:intergenic | 50.0% | |
| TGATGCAGCAAAGGAAACGC+CGG | - | chr3.1:44121546-44121565 | None:intergenic | 50.0% | |
| !! | ATCTCGTATTGGTTTGGCGC+CGG | - | chr3.1:44120188-44120207 | None:intergenic | 50.0% |
| GGTGGCAACAGAAGCGAAAC+AGG | + | chr3.1:44121578-44121597 | MS.gene94928:CDS | 55.0% | |
| GTTGTAGCAGCACTCCTTGC+CGG | + | chr3.1:44121524-44121543 | MS.gene94928:CDS | 55.0% | |
| GTTTCGCTTCTGTTGCCACC+CGG | - | chr3.1:44121578-44121597 | None:intergenic | 55.0% | |
| ! | TGCTGCATCAAGCACTGTGC+CGG | + | chr3.1:44121556-44121575 | MS.gene94928:CDS | 55.0% |
| CAGCAAAGGAAACGCCGGCA+AGG | - | chr3.1:44121541-44121560 | None:intergenic | 60.0% | |
| ! | GCTGCATCAAGCACTGTGCC+GGG | + | chr3.1:44121557-44121576 | MS.gene94928:CDS | 60.0% |
| ! | GCATCAAGCACTGTGCCGGG+TGG | + | chr3.1:44121560-44121579 | MS.gene94928:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 44120109 | 44121949 | 44120109 | ID=MS.gene94928 |
| chr3.1 | mRNA | 44120109 | 44121949 | 44120109 | ID=MS.gene94928.t1;Parent=MS.gene94928 |
| chr3.1 | exon | 44120109 | 44120256 | 44120109 | ID=MS.gene94928.t1.exon1;Parent=MS.gene94928.t1 |
| chr3.1 | CDS | 44120109 | 44120256 | 44120109 | ID=cds.MS.gene94928.t1;Parent=MS.gene94928.t1 |
| chr3.1 | exon | 44120640 | 44121013 | 44120640 | ID=MS.gene94928.t1.exon2;Parent=MS.gene94928.t1 |
| chr3.1 | CDS | 44120640 | 44121013 | 44120640 | ID=cds.MS.gene94928.t1;Parent=MS.gene94928.t1 |
| chr3.1 | exon | 44121380 | 44121949 | 44121380 | ID=MS.gene94928.t1.exon3;Parent=MS.gene94928.t1 |
| chr3.1 | CDS | 44121380 | 44121949 | 44121380 | ID=cds.MS.gene94928.t1;Parent=MS.gene94928.t1 |
| Gene Sequence |
| Protein sequence |
