Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95828.t1 | GAU48477.1 | 100 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 7.70E-51 | 209.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95828.t1 | Q9LZ57 | 82.7 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 4.0e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95828.t1 | A0A2Z6PQF7 | 100.0 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 5.6e-51 | 209.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050290 | MS.gene95828 | 0.863671 | 2.11E-64 | -1.69E-46 |
| MS.gene050916 | MS.gene95828 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene95828 | 0.871757 | 5.36E-67 | -1.69E-46 |
| MS.gene056257 | MS.gene95828 | 0.806388 | 8.43E-50 | -1.69E-46 |
| MS.gene056917 | MS.gene95828 | 0.865756 | 4.69E-65 | -1.69E-46 |
| MS.gene060856 | MS.gene95828 | 0.838146 | 3.42E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92142 | MS.gene95828 | PPI |
| MS.gene95828 | MS.gene98171 | PPI |
| MS.gene49109 | MS.gene95828 | PPI |
| MS.gene87309 | MS.gene95828 | PPI |
| MS.gene061166 | MS.gene95828 | PPI |
| MS.gene79721 | MS.gene95828 | PPI |
| MS.gene95828 | MS.gene81493 | PPI |
| MS.gene83961 | MS.gene95828 | PPI |
| MS.gene81493 | MS.gene95828 | PPI |
| MS.gene95828 | MS.gene34149 | PPI |
| MS.gene59609 | MS.gene95828 | PPI |
| MS.gene006276 | MS.gene95828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95828.t1 | MTR_1g100960 | 96.396 | 111 | 3 | 1 | 1 | 110 | 1 | 111 | 3.83e-71 | 207 |
| MS.gene95828.t1 | MTR_6g053730 | 98.198 | 111 | 1 | 1 | 1 | 110 | 1 | 111 | 9.95e-71 | 206 |
| MS.gene95828.t1 | MTR_1g100960 | 97.030 | 101 | 3 | 0 | 1 | 101 | 1 | 101 | 9.27e-67 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95828.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene95828.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene95828.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene95828.t1 | AT5G02450 | 82.692 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 3.67e-56 | 169 |
| MS.gene95828.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene95828.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene95828.t1 | AT3G53740 | 72.727 | 110 | 21 | 1 | 1 | 110 | 1 | 101 | 1.05e-48 | 150 |
Find 33 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6.2:-44138603 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6.2:-44138602 | None:intergenic |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6.2:-44138614 | None:intergenic |
| CCTTTACGGCTAGAGGGTTT+AGG | 0.305250 | 6.2:-44136756 | None:intergenic |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6.2:+44138761 | MS.gene95828:intron |
| CTAAACCCTCTAGCCGTAAA+GGG | 0.402747 | 6.2:+44136757 | MS.gene95828:CDS |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6.2:-44138584 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6.2:+44136680 | MS.gene95828:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6.2:-44138648 | None:intergenic |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6.2:+44138490 | MS.gene95828:CDS |
| CCTAAACCCTCTAGCCGTAA+AGG | 0.488599 | 6.2:+44136756 | MS.gene95828:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6.2:-44136684 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6.2:+44136681 | MS.gene95828:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6.2:+44138535 | MS.gene95828:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6.2:+44138548 | MS.gene95828:CDS |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6.2:+44138467 | MS.gene95828:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6.2:-44138492 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6.2:-44138520 | None:intergenic |
| TCATACCCCTTTACGGCTAG+AGG | 0.525898 | 6.2:-44136763 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.562117 | 6.2:+44136731 | MS.gene95828:CDS |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6.2:+44138540 | MS.gene95828:CDS |
| GGGACATGTTGTTACTAAGA+AGG | 0.568112 | 6.2:+44136725 | MS.gene95828:CDS |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6.2:+44138577 | MS.gene95828:CDS |
| CATACCCCTTTACGGCTAGA+GGG | 0.582186 | 6.2:-44136762 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6.2:-44138638 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6.2:+44138549 | MS.gene95828:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6.2:+44138531 | MS.gene95828:CDS |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6.2:+44138638 | MS.gene95828:CDS |
| TAAACCCTCTAGCCGTAAAG+GGG | 0.659101 | 6.2:+44136758 | MS.gene95828:CDS |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6.2:-44138645 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6.2:-44138498 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6.2:+44138609 | MS.gene95828:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6.2:+44138483 | MS.gene95828:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATTAACAAAAATA+TGG | - | chr6.2:44138217-44138236 | None:intergenic | 10.0% |
| !! | TTATTTAAAAGACATTATTT+GGG | + | chr6.2:44138234-44138253 | MS.gene95828:intron | 10.0% |
| !!! | AGAAATTTTTTTTTATAGTT+AGG | + | chr6.2:44137648-44137667 | MS.gene95828:intron | 10.0% |
| !! | ATAATACAATTGAAATCAAA+AGG | - | chr6.2:44138024-44138043 | None:intergenic | 15.0% |
| !! | CTTATTTAAAAGACATTATT+TGG | + | chr6.2:44138233-44138252 | MS.gene95828:intron | 15.0% |
| !! | TAATACAATTGAAATCAAAA+GGG | - | chr6.2:44138023-44138042 | None:intergenic | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | + | chr6.2:44137748-44137767 | MS.gene95828:intron | 15.0% |
| !!! | AGTTTAGTTTTAATTTTTGT+TGG | + | chr6.2:44137547-44137566 | MS.gene95828:intron | 15.0% |
| !!! | ATTTTTTATTGTAATAGTGA+AGG | + | chr6.2:44137263-44137282 | MS.gene95828:intron | 15.0% |
| !!! | GGTATGATTTTTTATTTTTA+GGG | + | chr6.2:44136779-44136798 | MS.gene95828:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | + | chr6.2:44138705-44138724 | MS.gene95828:intron | 15.0% |
| !!! | TTCAAGTTTAGTTAATTTTT+GGG | + | chr6.2:44137360-44137379 | MS.gene95828:intron | 15.0% |
| !!! | TTTAGGTTTAGTTAATTTTT+GGG | + | chr6.2:44136886-44136905 | MS.gene95828:intron | 15.0% |
| !!! | TTTCAAGTTTAGTTAATTTT+TGG | + | chr6.2:44137359-44137378 | MS.gene95828:intron | 15.0% |
| !!! | TTTTAATTTTCATTTGTGTT+TGG | + | chr6.2:44136933-44136952 | MS.gene95828:intron | 15.0% |
| !!! | TTTTAGGTTTAGTTAATTTT+TGG | + | chr6.2:44136885-44136904 | MS.gene95828:intron | 15.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | - | chr6.2:44138699-44138718 | None:intergenic | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | + | chr6.2:44138378-44138397 | MS.gene95828:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | - | chr6.2:44138698-44138717 | None:intergenic | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | + | chr6.2:44138265-44138284 | MS.gene95828:intron | 20.0% |
| !! | ATTGTTCATTTATCATCTAA+TGG | - | chr6.2:44137626-44137645 | None:intergenic | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | + | chr6.2:44136993-44137012 | MS.gene95828:intron | 20.0% |
| !! | GTTATTAATTGTAATAGTGA+AGG | + | chr6.2:44137442-44137461 | MS.gene95828:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | + | chr6.2:44138377-44138396 | MS.gene95828:intron | 20.0% |
| !!! | ATTTGAAGTGTAGTTAATTT+TGG | + | chr6.2:44137196-44137215 | MS.gene95828:intron | 20.0% |
| !!! | GATAAATGAGAATCTATTTT+AGG | + | chr6.2:44136869-44136888 | MS.gene95828:intron | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | + | chr6.2:44136778-44136797 | MS.gene95828:intron | 20.0% |
| !!! | TGTTTTTTGAGCTAATTTTT+GGG | + | chr6.2:44137065-44137084 | MS.gene95828:intron | 20.0% |
| !!! | TTAATTTTTGGGTATATTGA+TGG | + | chr6.2:44136897-44136916 | MS.gene95828:intron | 20.0% |
| !!! | TTGTTTTTTGAGCTAATTTT+TGG | + | chr6.2:44137064-44137083 | MS.gene95828:intron | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | + | chr6.2:44137982-44138001 | MS.gene95828:intron | 20.0% |
| !!! | TTTGAAGTGTAGTTAATTTT+GGG | + | chr6.2:44137197-44137216 | MS.gene95828:intron | 20.0% |
| ! | ACATCAAATCACATAACAAA+TGG | - | chr6.2:44137934-44137953 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | - | chr6.2:44138053-44138072 | None:intergenic | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | - | chr6.2:44136773-44136792 | None:intergenic | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | - | chr6.2:44138154-44138173 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | - | chr6.2:44138054-44138073 | None:intergenic | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | + | chr6.2:44138406-44138425 | MS.gene95828:intron | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+AGG | + | chr6.2:44138278-44138297 | MS.gene95828:intron | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | + | chr6.2:44136847-44136866 | MS.gene95828:intron | 25.0% |
| !! | TGAAACTATCTTGTGATTTT+TGG | + | chr6.2:44138066-44138085 | MS.gene95828:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | + | chr6.2:44138748-44138767 | MS.gene95828:intron | 25.0% |
| !!! | TTGTATTATTTTTAGCCCTT+TGG | + | chr6.2:44138035-44138054 | MS.gene95828:intron | 25.0% |
| !!! | TTTTGACTTTGATTTGTGTT+TGG | + | chr6.2:44137153-44137172 | MS.gene95828:intron | 25.0% |
| !!! | TTTTGATTTCGGTTAATGTT+TGG | + | chr6.2:44137310-44137329 | MS.gene95828:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | + | chr6.2:44138678-44138697 | MS.gene95828:intron | 25.0% |
| ATAAAGTTGCTTATCCAAAC+AGG | - | chr6.2:44137675-44137694 | None:intergenic | 30.0% | |
| ATATGAAAATGCAACAGCTT+TGG | + | chr6.2:44138179-44138198 | MS.gene95828:intron | 30.0% | |
| TAAAGTTGCTTATCCAAACA+GGG | - | chr6.2:44137674-44137693 | None:intergenic | 30.0% | |
| ! | AAGCTGTTGCATTTTCATAT+AGG | - | chr6.2:44138179-44138198 | None:intergenic | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | + | chr6.2:44136705-44136724 | MS.gene95828:CDS | 30.0% |
| ! | GTTTAGATTTTGCTTTGTGT+TGG | + | chr6.2:44137493-44137512 | MS.gene95828:intron | 30.0% |
| ! | TCTTTTTGTTGGATTGAACA+AGG | + | chr6.2:44136704-44136723 | MS.gene95828:CDS | 30.0% |
| ! | TTCGGTTAATGTTTGGAATT+TGG | + | chr6.2:44137317-44137336 | MS.gene95828:intron | 30.0% |
| !! | CTATCTTGTGATTTTTGGAA+TGG | + | chr6.2:44138071-44138090 | MS.gene95828:intron | 30.0% |
| !! | CTTTGATTTGTGTTTGGAAT+TGG | + | chr6.2:44137159-44137178 | MS.gene95828:intron | 30.0% |
| !! | TTAGATTTTAGTGATGCGTT+TGG | + | chr6.2:44136803-44136822 | MS.gene95828:intron | 30.0% |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | + | chr6.2:44138747-44138766 | MS.gene95828:intron | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+CGG | + | chr6.2:44137299-44137318 | MS.gene95828:intron | 30.0% |
| TCAAATAAGCTCATCCAAAC+AGG | + | chr6.2:44137908-44137927 | MS.gene95828:intron | 35.0% | |
| TGTTGTTACTAAGAAGGAGT+TGG | + | chr6.2:44136731-44136750 | MS.gene95828:CDS | 35.0% | |
| ! | AGATAGTTTGTGAGACTGTT+TGG | - | chr6.2:44137872-44137891 | None:intergenic | 35.0% |
| ! | GATAGTTTGTGAGACTGTTT+GGG | - | chr6.2:44137871-44137890 | None:intergenic | 35.0% |
| ! | GGCACTGTTTTACAATAACA+TGG | + | chr6.2:44137974-44137993 | MS.gene95828:intron | 35.0% |
| ! | TTTTATAGTTAGGCCCTGTT+TGG | + | chr6.2:44137658-44137677 | MS.gene95828:intron | 35.0% |
| !! | CTTTTTCGTTGCAATGCAAA+TGG | + | chr6.2:44137593-44137612 | MS.gene95828:intron | 35.0% |
| AAAGTTGCCAAGAGAAAGCT+CGG | + | chr6.2:44138577-44138596 | MS.gene95828:CDS | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | + | chr6.2:44138535-44138554 | MS.gene95828:CDS | 40.0% | |
| CACATAACAAATGGCCTGTT+TGG | - | chr6.2:44137925-44137944 | None:intergenic | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | - | chr6.2:44138605-44138624 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | - | chr6.2:44138651-44138670 | None:intergenic | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | + | chr6.2:44138549-44138568 | MS.gene95828:CDS | 40.0% | |
| GAGATTAGTGATGCATTTGC+AGG | + | chr6.2:44137387-44137406 | MS.gene95828:intron | 40.0% | |
| GGGACATGTTGTTACTAAGA+AGG | + | chr6.2:44136725-44136744 | MS.gene95828:CDS | 40.0% | |
| TCAGTGATACGCTTCTCATA+AGG | - | chr6.2:44138523-44138542 | None:intergenic | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | + | chr6.2:44138548-44138567 | MS.gene95828:CDS | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | + | chr6.2:44138540-44138559 | MS.gene95828:CDS | 40.0% | |
| TTGGTCCTAGTCCTAATATG+CGG | + | chr6.2:44138425-44138444 | MS.gene95828:intron | 40.0% | |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | + | chr6.2:44137953-44137972 | MS.gene95828:intron | 40.0% |
| !! | GCTGTTTTCATGAGCTGTTT+TGG | + | chr6.2:44137783-44137802 | MS.gene95828:intron | 40.0% |
| !!! | GAGCTAATTTTTGGGTTCAG+AGG | + | chr6.2:44137073-44137092 | MS.gene95828:intron | 40.0% |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | - | chr6.2:44138453-44138472 | None:intergenic | 40.0% |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | + | chr6.2:44138752-44138771 | MS.gene95828:intron | 40.0% |
| CCAACAAAAAGACCCGTACT+TGG | - | chr6.2:44136696-44136715 | None:intergenic | 45.0% | |
| CTAAACCCTCTAGCCGTAAA+GGG | + | chr6.2:44136757-44136776 | MS.gene95828:CDS | 45.0% | |
| GCGTATCACTGAATTGCTGA+AGG | + | chr6.2:44138531-44138550 | MS.gene95828:CDS | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | - | chr6.2:44138606-44138625 | None:intergenic | 45.0% | |
| TAAACCCTCTAGCCGTAAAG+GGG | + | chr6.2:44136758-44136777 | MS.gene95828:CDS | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | + | chr6.2:44136693-44136712 | MS.gene95828:CDS | 45.0% |
| !! | TGTTCAAGGCACCGCATATT+AGG | - | chr6.2:44138439-44138458 | None:intergenic | 45.0% |
| ATGGGTTCCGAGCTTTCTCT+TGG | - | chr6.2:44138587-44138606 | None:intergenic | 50.0% | |
| CATACCCCTTTACGGCTAGA+GGG | - | chr6.2:44136765-44136784 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | - | chr6.2:44138617-44138636 | None:intergenic | 50.0% | |
| CCTAAACCCTCTAGCCGTAA+AGG | + | chr6.2:44136756-44136775 | MS.gene95828:CDS | 50.0% | |
| CCTTTACGGCTAGAGGGTTT+AGG | - | chr6.2:44136759-44136778 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | - | chr6.2:44138648-44138667 | None:intergenic | 50.0% | |
| GCAAGCGTGTGCACTTTGTA+AGG | + | chr6.2:44138467-44138486 | MS.gene95828:CDS | 50.0% | |
| TCATACCCCTTTACGGCTAG+AGG | - | chr6.2:44136766-44136785 | None:intergenic | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | - | chr6.2:44138433-44138452 | None:intergenic | 50.0% |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | + | chr6.2:44138755-44138774 | MS.gene95828:intron | 50.0% |
| AGACCCGTACTTGGCTGCTT+CGG | - | chr6.2:44136687-44136706 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | + | chr6.2:44138638-44138657 | MS.gene95828:CDS | 55.0% | |
| CCTCATCTTTCGGAGGACGT+TGG | - | chr6.2:44138641-44138660 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | + | chr6.2:44138483-44138502 | MS.gene95828:CDS | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | + | chr6.2:44138609-44138628 | MS.gene95828:CDS | 55.0% |
| AACCTCATCCGCGAGGTAGC+TGG | + | chr6.2:44138490-44138509 | MS.gene95828:CDS | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | - | chr6.2:44138501-44138520 | None:intergenic | 60.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | - | chr6.2:44138495-44138514 | None:intergenic | 65.0% | |
| GCGCCGAAGCAGCCAAGTAC+GGG | + | chr6.2:44136681-44136700 | MS.gene95828:CDS | 65.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | + | chr6.2:44136680-44136699 | MS.gene95828:CDS | 65.0% |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | + | chr6.2:44138761-44138780 | MS.gene95828:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 44136678 | 44138799 | 44136678 | ID=MS.gene95828 |
| chr6.2 | mRNA | 44136678 | 44138799 | 44136678 | ID=MS.gene95828.t1;Parent=MS.gene95828 |
| chr6.2 | exon | 44136678 | 44136779 | 44136678 | ID=MS.gene95828.t1.exon1;Parent=MS.gene95828.t1 |
| chr6.2 | CDS | 44136678 | 44136779 | 44136678 | ID=cds.MS.gene95828.t1;Parent=MS.gene95828.t1 |
| chr6.2 | exon | 44138460 | 44138659 | 44138460 | ID=MS.gene95828.t1.exon2;Parent=MS.gene95828.t1 |
| chr6.2 | CDS | 44138460 | 44138659 | 44138460 | ID=cds.MS.gene95828.t1;Parent=MS.gene95828.t1 |
| chr6.2 | exon | 44138769 | 44138799 | 44138769 | ID=MS.gene95828.t1.exon3;Parent=MS.gene95828.t1 |
| chr6.2 | CDS | 44138769 | 44138799 | 44138769 | ID=cds.MS.gene95828.t1;Parent=MS.gene95828.t1 |
| Gene Sequence |
| Protein sequence |