Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83961.t1 | GAU48477.1 | 100 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 7.70E-51 | 209.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83961.t1 | Q9LZ57 | 82.7 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 4.0e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83961.t1 | A0A2Z6PQF7 | 100.0 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 5.6e-51 | 209.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene83961 | 0.815714 | 8.03E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene83961 | 0.844553 | 7.04E-59 | -1.69E-46 |
| MS.gene050290 | MS.gene83961 | 0.833923 | 4.03E-56 | -1.69E-46 |
| MS.gene050320 | MS.gene83961 | 0.808733 | 2.68E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene83961 | 0.838625 | 2.57E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene83961 | 0.817346 | 3.46E-52 | -1.69E-46 |
| MS.gene050916 | MS.gene83961 | 0.86447 | 1.19E-64 | -1.69E-46 |
| MS.gene050955 | MS.gene83961 | 0.8369 | 7.13E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene83961 | 0.804464 | 2.13E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene83961 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene83961 | 0.867419 | 1.39E-65 | -1.69E-46 |
| MS.gene05134 | MS.gene83961 | 0.821597 | 3.71E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene83961 | 0.829479 | 5.03E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene83961 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene83961 | 0.815809 | 7.64E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene83961 | 0.826367 | 2.82E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene83961 | 0.886999 | 2.10E-72 | -1.69E-46 |
| MS.gene052947 | MS.gene83961 | 0.893772 | 4.60E-75 | -1.69E-46 |
| MS.gene053109 | MS.gene83961 | 0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene83961 | 0.806607 | 7.58E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene83961 | 0.843444 | 1.40E-58 | -1.69E-46 |
| MS.gene054937 | MS.gene83961 | 0.871357 | 7.27E-67 | -1.69E-46 |
| MS.gene055555 | MS.gene83961 | 0.833708 | 4.57E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene83961 | 0.826939 | 2.06E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene83961 | 0.874683 | 5.58E-68 | -1.69E-46 |
| MS.gene056091 | MS.gene83961 | 0.825708 | 4.05E-54 | -1.69E-46 |
| MS.gene056215 | MS.gene83961 | 0.802071 | 6.67E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene83961 | 0.877311 | 6.96E-69 | -1.69E-46 |
| MS.gene056917 | MS.gene83961 | 0.816672 | 4.90E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene83961 | 0.806812 | 6.86E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene83961 | 0.838927 | 2.15E-57 | -1.69E-46 |
| MS.gene057206 | MS.gene83961 | 0.830959 | 2.19E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene83961 | 0.860514 | 1.96E-63 | -1.69E-46 |
| MS.gene058238 | MS.gene83961 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene058354 | MS.gene83961 | 0.814621 | 1.40E-51 | -1.69E-46 |
| MS.gene058364 | MS.gene83961 | 0.816688 | 4.86E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene83961 | 0.824634 | 7.26E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene83961 | 0.884444 | 1.91E-71 | -1.69E-46 |
| MS.gene06011 | MS.gene83961 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene83961 | 0.879619 | 1.07E-69 | -1.69E-46 |
| MS.gene060830 | MS.gene83961 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene83961 | 0.835404 | 1.71E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92142 | MS.gene83961 | PPI |
| MS.gene83961 | MS.gene34149 | PPI |
| MS.gene006276 | MS.gene83961 | PPI |
| MS.gene83961 | MS.gene59609 | PPI |
| MS.gene87309 | MS.gene83961 | PPI |
| MS.gene83961 | MS.gene49109 | PPI |
| MS.gene49109 | MS.gene83961 | PPI |
| MS.gene061166 | MS.gene83961 | PPI |
| MS.gene79721 | MS.gene83961 | PPI |
| MS.gene83961 | MS.gene98171 | PPI |
| MS.gene83961 | MS.gene95828 | PPI |
| MS.gene83961 | MS.gene81493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83961.t1 | MTR_1g100960 | 96.396 | 111 | 3 | 1 | 1 | 110 | 1 | 111 | 3.83e-71 | 207 |
| MS.gene83961.t1 | MTR_6g053730 | 98.198 | 111 | 1 | 1 | 1 | 110 | 1 | 111 | 9.95e-71 | 206 |
| MS.gene83961.t1 | MTR_1g100960 | 97.030 | 101 | 3 | 0 | 1 | 101 | 1 | 101 | 9.27e-67 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83961.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene83961.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene83961.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene83961.t1 | AT5G02450 | 82.692 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 3.67e-56 | 169 |
| MS.gene83961.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene83961.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene83961.t1 | AT3G53740 | 72.727 | 110 | 21 | 1 | 1 | 110 | 1 | 101 | 1.05e-48 | 150 |
Find 33 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6.1:-31299970 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6.1:-31299969 | None:intergenic |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6.1:-31299981 | None:intergenic |
| CCTTTACGGCTAGAGGGTTT+AGG | 0.305250 | 6.1:-31298175 | None:intergenic |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6.1:+31300128 | MS.gene83961:intron |
| CTAAACCCTCTAGCCGTAAA+GGG | 0.402747 | 6.1:+31298176 | MS.gene83961:CDS |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6.1:-31299951 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6.1:+31298099 | MS.gene83961:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6.1:-31300015 | None:intergenic |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6.1:+31299857 | MS.gene83961:CDS |
| CCTAAACCCTCTAGCCGTAA+AGG | 0.488599 | 6.1:+31298175 | MS.gene83961:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6.1:-31298103 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6.1:+31298100 | MS.gene83961:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6.1:+31299902 | MS.gene83961:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6.1:+31299915 | MS.gene83961:CDS |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6.1:+31299834 | MS.gene83961:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6.1:-31299859 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6.1:-31299887 | None:intergenic |
| TCATACCCCTTTACGGCTAG+AGG | 0.525898 | 6.1:-31298182 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.545489 | 6.1:+31298150 | MS.gene83961:CDS |
| GGGTCATGTTGTTACTAAGA+AGG | 0.556387 | 6.1:+31298144 | MS.gene83961:CDS |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6.1:+31299907 | MS.gene83961:CDS |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6.1:+31299944 | MS.gene83961:CDS |
| CATACCCCTTTACGGCTAGA+GGG | 0.582186 | 6.1:-31298181 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6.1:-31300005 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6.1:+31299916 | MS.gene83961:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6.1:+31299898 | MS.gene83961:CDS |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6.1:+31300005 | MS.gene83961:CDS |
| TAAACCCTCTAGCCGTAAAG+GGG | 0.659101 | 6.1:+31298177 | MS.gene83961:CDS |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6.1:-31300012 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6.1:-31299865 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6.1:+31299976 | MS.gene83961:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6.1:+31299850 | MS.gene83961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATTAACGAAAATA+TGG | - | chr6.1:31299587-31299606 | None:intergenic | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | + | chr6.1:31299149-31299168 | MS.gene83961:intron | 15.0% |
| !!! | GGTATGATTTTTTATTTTTA+GGG | + | chr6.1:31298198-31298217 | MS.gene83961:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | + | chr6.1:31300072-31300091 | MS.gene83961:intron | 15.0% |
| !!! | TTCTTATTTAAAAGACATTT+GGG | + | chr6.1:31299601-31299620 | MS.gene83961:intron | 15.0% |
| !!! | TTGAAGTTTAGTTAATTTTT+AGG | + | chr6.1:31298587-31298606 | MS.gene83961:intron | 15.0% |
| !!! | TTTAGGTTTAGTTAATTTTT+GGG | + | chr6.1:31298305-31298324 | MS.gene83961:intron | 15.0% |
| !!! | TTTCTTATTTAAAAGACATT+TGG | + | chr6.1:31299600-31299619 | MS.gene83961:intron | 15.0% |
| !!! | TTTTAATTTTCATTTGTGTT+TGG | + | chr6.1:31298352-31298371 | MS.gene83961:intron | 15.0% |
| !!! | TTTTAGGTTTAGTTAATTTT+TGG | + | chr6.1:31298304-31298323 | MS.gene83961:intron | 15.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | - | chr6.1:31300066-31300085 | None:intergenic | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | + | chr6.1:31299745-31299764 | MS.gene83961:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | - | chr6.1:31300065-31300084 | None:intergenic | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | + | chr6.1:31299632-31299651 | MS.gene83961:intron | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | + | chr6.1:31298412-31298431 | MS.gene83961:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | + | chr6.1:31299744-31299763 | MS.gene83961:intron | 20.0% |
| !! | TGGTTAATGTTTGAATTTAT+TGG | + | chr6.1:31298720-31298739 | MS.gene83961:intron | 20.0% |
| !!! | AGTTTAGTTTTAAGTTTTGT+TGG | + | chr6.1:31298950-31298969 | MS.gene83961:intron | 20.0% |
| !!! | ATTGTTCATTTTTCATCTAA+TGG | - | chr6.1:31299029-31299048 | None:intergenic | 20.0% |
| !!! | GAGGATTTTTTTTTATAGTT+AGG | + | chr6.1:31299050-31299069 | MS.gene83961:intron | 20.0% |
| !!! | GATAAATGAGAATCTATTTT+AGG | + | chr6.1:31298288-31298307 | MS.gene83961:intron | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | + | chr6.1:31298197-31298216 | MS.gene83961:intron | 20.0% |
| !!! | TTGATGTTTAGTTAACTTTT+GGG | + | chr6.1:31298763-31298782 | MS.gene83961:intron | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | + | chr6.1:31299383-31299402 | MS.gene83961:intron | 20.0% |
| !!! | TTTGATGTTTAGTTAACTTT+TGG | + | chr6.1:31298762-31298781 | MS.gene83961:intron | 20.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr6.1:31299077-31299096 | None:intergenic | 25.0% |
| ! | ACATCAAATCACATAACAAA+TGG | - | chr6.1:31299335-31299354 | None:intergenic | 25.0% |
| ! | AGATGAAAAATGAACAATTG+AGG | + | chr6.1:31299031-31299050 | MS.gene83961:intron | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | - | chr6.1:31299424-31299443 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr6.1:31299076-31299095 | None:intergenic | 25.0% |
| ! | GTTATTAGTTGTAATAGTGA+AGG | + | chr6.1:31298845-31298864 | MS.gene83961:intron | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | - | chr6.1:31298192-31298211 | None:intergenic | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | - | chr6.1:31299525-31299544 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | - | chr6.1:31299425-31299444 | None:intergenic | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | + | chr6.1:31299773-31299792 | MS.gene83961:intron | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+TGG | + | chr6.1:31299645-31299664 | MS.gene83961:intron | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | + | chr6.1:31298266-31298285 | MS.gene83961:intron | 25.0% |
| !! | TGAAACTATCTTGTGATTTT+TGG | + | chr6.1:31299437-31299456 | MS.gene83961:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | + | chr6.1:31300115-31300134 | MS.gene83961:intron | 25.0% |
| !!! | TGTTTGTTTTGATTTGTGTT+TGG | + | chr6.1:31298548-31298567 | MS.gene83961:intron | 25.0% |
| !!! | TTAATTTTTGGGTATAGTGA+TGG | + | chr6.1:31298316-31298335 | MS.gene83961:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | + | chr6.1:31300045-31300064 | MS.gene83961:intron | 25.0% |
| ATATGAAAATGCAACAGCTT+TGG | + | chr6.1:31299550-31299569 | MS.gene83961:intron | 30.0% | |
| TTAGATATTAGTGATGCGTT+TGG | + | chr6.1:31298222-31298241 | MS.gene83961:intron | 30.0% | |
| ! | AAGCTGTTGCATTTTCATAT+AGG | - | chr6.1:31299550-31299569 | None:intergenic | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | + | chr6.1:31298124-31298143 | MS.gene83961:CDS | 30.0% |
| ! | TCTTTTTGTTGGATTGAACA+AGG | + | chr6.1:31298123-31298142 | MS.gene83961:CDS | 30.0% |
| !! | CTATCTTGTGATTTTTGGAA+TGG | + | chr6.1:31299442-31299461 | MS.gene83961:intron | 30.0% |
| !!! | AGTCTTTATTTTTTGCCCTT+TGG | + | chr6.1:31299406-31299425 | MS.gene83961:intron | 30.0% |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | + | chr6.1:31300114-31300133 | MS.gene83961:intron | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+TGG | + | chr6.1:31298700-31298719 | MS.gene83961:intron | 30.0% |
| !!! | GTTTTTTATTGTCATAGCGA+AGG | + | chr6.1:31298664-31298683 | MS.gene83961:intron | 30.0% |
| GTAAACCATTTGCATTGCAA+CGG | - | chr6.1:31299004-31299023 | None:intergenic | 35.0% | |
| TACTCAACAAGATCGTTTGT+AGG | - | chr6.1:31299282-31299301 | None:intergenic | 35.0% | |
| TCAAATAAGCTCATCCAAAC+AGG | + | chr6.1:31299309-31299328 | MS.gene83961:intron | 35.0% | |
| TGTCTGTTGAGCTAATCTTT+GGG | + | chr6.1:31298466-31298485 | MS.gene83961:intron | 35.0% | |
| TGTTGTTACTAAGAAGGAGT+TGG | + | chr6.1:31298150-31298169 | MS.gene83961:CDS | 35.0% | |
| TTGTCTGTTGAGCTAATCTT+TGG | + | chr6.1:31298465-31298484 | MS.gene83961:intron | 35.0% | |
| ! | GGCACTGTTTTACAATAACA+TGG | + | chr6.1:31299375-31299394 | MS.gene83961:intron | 35.0% |
| ! | TTTTATAGTTAGGCCCTGTT+TGG | + | chr6.1:31299060-31299079 | MS.gene83961:intron | 35.0% |
| AAAGTTGCCAAGAGAAAGCT+CGG | + | chr6.1:31299944-31299963 | MS.gene83961:CDS | 40.0% | |
| AGATCGTTTGTAGGACTGTT+TGG | - | chr6.1:31299273-31299292 | None:intergenic | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | + | chr6.1:31299902-31299921 | MS.gene83961:CDS | 40.0% | |
| CACATAACAAATGGCCTGTT+TGG | - | chr6.1:31299326-31299345 | None:intergenic | 40.0% | |
| CATTTCCGTTGCAATGCAAA+TGG | + | chr6.1:31298996-31299015 | MS.gene83961:intron | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | - | chr6.1:31299972-31299991 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | - | chr6.1:31300018-31300037 | None:intergenic | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | + | chr6.1:31299916-31299935 | MS.gene83961:CDS | 40.0% | |
| GAGATTAGTGATGCATTTGC+TGG | + | chr6.1:31298790-31298809 | MS.gene83961:intron | 40.0% | |
| GATCGTTTGTAGGACTGTTT+GGG | - | chr6.1:31299272-31299291 | None:intergenic | 40.0% | |
| GGGTCATGTTGTTACTAAGA+AGG | + | chr6.1:31298144-31298163 | MS.gene83961:CDS | 40.0% | |
| TCAGTGATACGCTTCTCATA+AGG | - | chr6.1:31299890-31299909 | None:intergenic | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | + | chr6.1:31299915-31299934 | MS.gene83961:CDS | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | + | chr6.1:31299907-31299926 | MS.gene83961:CDS | 40.0% | |
| TTGGTCCTAGTCCTAATATG+CGG | + | chr6.1:31299792-31299811 | MS.gene83961:intron | 40.0% | |
| ! | GTTGAGCTAATCTTTGGGTT+CGG | + | chr6.1:31298471-31298490 | MS.gene83961:intron | 40.0% |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | + | chr6.1:31299354-31299373 | MS.gene83961:intron | 40.0% |
| !! | GCTGTTTTCATGAGCTGTTT+TGG | + | chr6.1:31299184-31299203 | MS.gene83961:intron | 40.0% |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | - | chr6.1:31299820-31299839 | None:intergenic | 40.0% |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | + | chr6.1:31300119-31300138 | MS.gene83961:intron | 40.0% |
| CCAACAAAAAGACCCGTACT+TGG | - | chr6.1:31298115-31298134 | None:intergenic | 45.0% | |
| CTAAACCCTCTAGCCGTAAA+GGG | + | chr6.1:31298176-31298195 | MS.gene83961:CDS | 45.0% | |
| GCGTATCACTGAATTGCTGA+AGG | + | chr6.1:31299898-31299917 | MS.gene83961:CDS | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | - | chr6.1:31299973-31299992 | None:intergenic | 45.0% | |
| TAAACCCTCTAGCCGTAAAG+GGG | + | chr6.1:31298177-31298196 | MS.gene83961:CDS | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | + | chr6.1:31298112-31298131 | MS.gene83961:CDS | 45.0% |
| !! | TGTTCAAGGCACCGCATATT+AGG | - | chr6.1:31299806-31299825 | None:intergenic | 45.0% |
| ATGGGTTCCGAGCTTTCTCT+TGG | - | chr6.1:31299954-31299973 | None:intergenic | 50.0% | |
| CATACCCCTTTACGGCTAGA+GGG | - | chr6.1:31298184-31298203 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | - | chr6.1:31299984-31300003 | None:intergenic | 50.0% | |
| CCTAAACCCTCTAGCCGTAA+AGG | + | chr6.1:31298175-31298194 | MS.gene83961:CDS | 50.0% | |
| CCTTTACGGCTAGAGGGTTT+AGG | - | chr6.1:31298178-31298197 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | - | chr6.1:31300015-31300034 | None:intergenic | 50.0% | |
| GCAAGCGTGTGCACTTTGTA+AGG | + | chr6.1:31299834-31299853 | MS.gene83961:CDS | 50.0% | |
| TCATACCCCTTTACGGCTAG+AGG | - | chr6.1:31298185-31298204 | None:intergenic | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | - | chr6.1:31299800-31299819 | None:intergenic | 50.0% |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | + | chr6.1:31300122-31300141 | MS.gene83961:intron | 50.0% |
| AGACCCGTACTTGGCTGCTT+CGG | - | chr6.1:31298106-31298125 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | + | chr6.1:31300005-31300024 | MS.gene83961:CDS | 55.0% | |
| CCTCATCTTTCGGAGGACGT+TGG | - | chr6.1:31300008-31300027 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | + | chr6.1:31299850-31299869 | MS.gene83961:CDS | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | + | chr6.1:31299976-31299995 | MS.gene83961:CDS | 55.0% |
| AACCTCATCCGCGAGGTAGC+TGG | + | chr6.1:31299857-31299876 | MS.gene83961:CDS | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | - | chr6.1:31299868-31299887 | None:intergenic | 60.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | - | chr6.1:31299862-31299881 | None:intergenic | 65.0% | |
| GCGCCGAAGCAGCCAAGTAC+GGG | + | chr6.1:31298100-31298119 | MS.gene83961:CDS | 65.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | + | chr6.1:31298099-31298118 | MS.gene83961:CDS | 65.0% |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | + | chr6.1:31300128-31300147 | MS.gene83961:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 31298097 | 31300166 | 31298097 | ID=MS.gene83961 |
| chr6.1 | mRNA | 31298097 | 31300166 | 31298097 | ID=MS.gene83961.t1;Parent=MS.gene83961 |
| chr6.1 | exon | 31298097 | 31298198 | 31298097 | ID=MS.gene83961.t1.exon1;Parent=MS.gene83961.t1 |
| chr6.1 | CDS | 31298097 | 31298198 | 31298097 | ID=cds.MS.gene83961.t1;Parent=MS.gene83961.t1 |
| chr6.1 | exon | 31299827 | 31300026 | 31299827 | ID=MS.gene83961.t1.exon2;Parent=MS.gene83961.t1 |
| chr6.1 | CDS | 31299827 | 31300026 | 31299827 | ID=cds.MS.gene83961.t1;Parent=MS.gene83961.t1 |
| chr6.1 | exon | 31300136 | 31300166 | 31300136 | ID=MS.gene83961.t1.exon3;Parent=MS.gene83961.t1 |
| chr6.1 | CDS | 31300136 | 31300166 | 31300136 | ID=cds.MS.gene83961.t1;Parent=MS.gene83961.t1 |
| Gene Sequence |
| Protein sequence |
