Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81493.t1 | GAU48477.1 | 100 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 7.70E-51 | 209.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81493.t1 | Q9LZ57 | 82.7 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 4.0e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81493.t1 | A0A2Z6PQF7 | 100.0 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 5.6e-51 | 209.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene81493 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene81493 | 0.830545 | 2.77E-55 | -1.69E-46 |
| MS.gene050290 | MS.gene81493 | 0.825398 | 4.79E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene81493 | 0.830478 | 2.87E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene81493 | 0.809094 | 2.24E-50 | -1.69E-46 |
| MS.gene050916 | MS.gene81493 | 0.8519 | 6.56E-61 | -1.69E-46 |
| MS.gene050955 | MS.gene81493 | 0.835732 | 1.41E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene81493 | 0.802505 | 5.44E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene81493 | 0.866867 | 2.08E-65 | -1.69E-46 |
| MS.gene05134 | MS.gene81493 | 0.818836 | 1.59E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene81493 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene81493 | 0.823084 | 1.68E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene81493 | 0.873014 | 2.04E-67 | -1.69E-46 |
| MS.gene052947 | MS.gene81493 | 0.893952 | 3.89E-75 | -1.69E-46 |
| MS.gene054403 | MS.gene81493 | 0.836815 | 7.50E-57 | -1.69E-46 |
| MS.gene054937 | MS.gene81493 | 0.859739 | 3.36E-63 | -1.69E-46 |
| MS.gene055555 | MS.gene81493 | 0.836575 | 8.63E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene81493 | 0.824977 | 6.02E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene81493 | 0.860217 | 2.41E-63 | -1.69E-46 |
| MS.gene056091 | MS.gene81493 | 0.816665 | 4.92E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene81493 | 0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene81493 | 0.873771 | 1.14E-67 | -1.69E-46 |
| MS.gene056917 | MS.gene81493 | 0.813935 | 1.99E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene81493 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene81493 | 0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene057206 | MS.gene81493 | 0.820153 | 7.97E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene81493 | 0.861298 | 1.13E-63 | -1.69E-46 |
| MS.gene058354 | MS.gene81493 | 0.827429 | 1.57E-54 | -1.69E-46 |
| MS.gene058364 | MS.gene81493 | 0.821782 | 3.36E-53 | -1.69E-46 |
| MS.gene059227 | MS.gene81493 | 0.81589 | 7.33E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene81493 | 0.874527 | 6.30E-68 | -1.69E-46 |
| MS.gene06011 | MS.gene81493 | 0.814738 | 1.32E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene81493 | 0.879338 | 1.35E-69 | -1.69E-46 |
| MS.gene060917 | MS.gene81493 | 0.846111 | 2.67E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92142 | MS.gene81493 | PPI |
| MS.gene81493 | MS.gene34149 | PPI |
| MS.gene59609 | MS.gene81493 | PPI |
| MS.gene81493 | MS.gene98171 | PPI |
| MS.gene006276 | MS.gene81493 | PPI |
| MS.gene87309 | MS.gene81493 | PPI |
| MS.gene49109 | MS.gene81493 | PPI |
| MS.gene95828 | MS.gene81493 | PPI |
| MS.gene81493 | MS.gene95828 | PPI |
| MS.gene061166 | MS.gene81493 | PPI |
| MS.gene79721 | MS.gene81493 | PPI |
| MS.gene83961 | MS.gene81493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81493.t1 | MTR_1g100960 | 96.396 | 111 | 3 | 1 | 1 | 110 | 1 | 111 | 3.83e-71 | 207 |
| MS.gene81493.t1 | MTR_6g053730 | 98.198 | 111 | 1 | 1 | 1 | 110 | 1 | 111 | 9.95e-71 | 206 |
| MS.gene81493.t1 | MTR_1g100960 | 97.030 | 101 | 3 | 0 | 1 | 101 | 1 | 101 | 9.27e-67 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81493.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene81493.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene81493.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene81493.t1 | AT5G02450 | 82.692 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 3.67e-56 | 169 |
| MS.gene81493.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene81493.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene81493.t1 | AT3G53740 | 72.727 | 110 | 21 | 1 | 1 | 110 | 1 | 101 | 1.05e-48 | 150 |
Find 33 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6.4:-20980908 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6.4:-20980907 | None:intergenic |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6.4:-20980919 | None:intergenic |
| CCTTTACGGCTAGAGGGTTT+AGG | 0.305250 | 6.4:-20979217 | None:intergenic |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6.4:+20981066 | MS.gene81493:intron |
| CTAAACCCTCTAGCCGTAAA+GGG | 0.402747 | 6.4:+20979218 | MS.gene81493:CDS |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6.4:-20980889 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6.4:+20979141 | MS.gene81493:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6.4:-20980953 | None:intergenic |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6.4:+20980795 | MS.gene81493:CDS |
| CCTAAACCCTCTAGCCGTAA+AGG | 0.488599 | 6.4:+20979217 | MS.gene81493:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6.4:-20979145 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6.4:+20979142 | MS.gene81493:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6.4:+20980840 | MS.gene81493:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6.4:+20980853 | MS.gene81493:CDS |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6.4:+20980772 | MS.gene81493:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6.4:-20980797 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6.4:-20980825 | None:intergenic |
| TCATACCCCTTTACGGCTAG+AGG | 0.525898 | 6.4:-20979224 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.545489 | 6.4:+20979192 | MS.gene81493:CDS |
| GGGTCATGTTGTTACTAAGA+AGG | 0.556387 | 6.4:+20979186 | MS.gene81493:CDS |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6.4:+20980845 | MS.gene81493:CDS |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6.4:+20980882 | MS.gene81493:CDS |
| CATACCCCTTTACGGCTAGA+GGG | 0.582186 | 6.4:-20979223 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6.4:-20980943 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6.4:+20980854 | MS.gene81493:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6.4:+20980836 | MS.gene81493:CDS |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6.4:+20980943 | MS.gene81493:CDS |
| TAAACCCTCTAGCCGTAAAG+GGG | 0.659101 | 6.4:+20979219 | MS.gene81493:CDS |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6.4:-20980950 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6.4:-20980803 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6.4:+20980914 | MS.gene81493:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6.4:+20980788 | MS.gene81493:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAAAGACATTATTT+GGG | + | chr6.4:20980539-20980558 | MS.gene81493:intron | 10.0% |
| !! | CTTATTTAAAAGACATTATT+TGG | + | chr6.4:20980538-20980557 | MS.gene81493:intron | 15.0% |
| !! | TAAGAAAATTAACGAAAATA+TGG | - | chr6.4:20980522-20980541 | None:intergenic | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | + | chr6.4:20980086-20980105 | MS.gene81493:intron | 15.0% |
| !!! | GGTATGATTTTTTATTTTTA+GGG | + | chr6.4:20979240-20979259 | MS.gene81493:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | + | chr6.4:20981010-20981029 | MS.gene81493:intron | 15.0% |
| !!! | TTCAAGTTTAGTTAATTTTT+GGG | + | chr6.4:20979700-20979719 | MS.gene81493:intron | 15.0% |
| !!! | TTTAGGTTTAGTTAATTTTT+GGG | + | chr6.4:20979347-20979366 | MS.gene81493:intron | 15.0% |
| !!! | TTTCAAGTTTAGTTAATTTT+TGG | + | chr6.4:20979699-20979718 | MS.gene81493:intron | 15.0% |
| !!! | TTTTAATTTTCATTTGTGTT+TGG | + | chr6.4:20979394-20979413 | MS.gene81493:intron | 15.0% |
| !!! | TTTTAGGTTTAGTTAATTTT+TGG | + | chr6.4:20979346-20979365 | MS.gene81493:intron | 15.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | - | chr6.4:20981004-20981023 | None:intergenic | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | + | chr6.4:20980683-20980702 | MS.gene81493:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | - | chr6.4:20981003-20981022 | None:intergenic | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | + | chr6.4:20980570-20980589 | MS.gene81493:intron | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | + | chr6.4:20979454-20979473 | MS.gene81493:intron | 20.0% |
| !! | GTTATTAATTGTAATAGTGA+AGG | + | chr6.4:20979782-20979801 | MS.gene81493:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | + | chr6.4:20980682-20980701 | MS.gene81493:intron | 20.0% |
| !! | TCACTAATATTTAAATACCT+TGG | - | chr6.4:20979623-20979642 | None:intergenic | 20.0% |
| !!! | AGTTTAGTTTTAAGTTTTGT+TGG | + | chr6.4:20979887-20979906 | MS.gene81493:intron | 20.0% |
| !!! | ATTGTTCATTTTTCATCTAA+TGG | - | chr6.4:20979966-20979985 | None:intergenic | 20.0% |
| !!! | GAGGAATTTTTTTTATAGTT+AGG | + | chr6.4:20979987-20980006 | MS.gene81493:intron | 20.0% |
| !!! | GATAAATGAGAATCTATTTT+AGG | + | chr6.4:20979330-20979349 | MS.gene81493:intron | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | + | chr6.4:20979239-20979258 | MS.gene81493:intron | 20.0% |
| !!! | TGAAACTATTTTGTGATTTT+TGG | + | chr6.4:20980372-20980391 | MS.gene81493:intron | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | + | chr6.4:20980320-20980339 | MS.gene81493:intron | 20.0% |
| !!! | TTTTGATTTTGGTTAATGTT+TGG | + | chr6.4:20979650-20979669 | MS.gene81493:intron | 20.0% |
| ! | AATAAGTTGTTTATCCAAAG+AGG | - | chr6.4:20980014-20980033 | None:intergenic | 25.0% |
| ! | ACATCAAATCACATAACAAA+TGG | - | chr6.4:20980272-20980291 | None:intergenic | 25.0% |
| ! | AGATGAAAAATGAACAATTG+AGG | + | chr6.4:20979968-20979987 | MS.gene81493:intron | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | - | chr6.4:20980359-20980378 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAAGA+GGG | - | chr6.4:20980013-20980032 | None:intergenic | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | - | chr6.4:20979234-20979253 | None:intergenic | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | - | chr6.4:20980460-20980479 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | - | chr6.4:20980360-20980379 | None:intergenic | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | + | chr6.4:20980711-20980730 | MS.gene81493:intron | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+TGG | + | chr6.4:20980583-20980602 | MS.gene81493:intron | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | + | chr6.4:20979308-20979327 | MS.gene81493:intron | 25.0% |
| !! | TTTGGTTAATGTTTGGAATT+TGG | + | chr6.4:20979657-20979676 | MS.gene81493:intron | 25.0% |
| !!! | CTATTTTGTGATTTTTGGAA+TGG | + | chr6.4:20980377-20980396 | MS.gene81493:intron | 25.0% |
| !!! | GTTTTTTATTGAAAATGCCA+AGG | + | chr6.4:20979603-20979622 | MS.gene81493:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | + | chr6.4:20981053-20981072 | MS.gene81493:intron | 25.0% |
| !!! | TTAATTTTTGGGTATAGTGA+TGG | + | chr6.4:20979358-20979377 | MS.gene81493:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | + | chr6.4:20980983-20981002 | MS.gene81493:intron | 25.0% |
| ATATGAAAATGCAACAGCTT+TGG | + | chr6.4:20980485-20980504 | MS.gene81493:intron | 30.0% | |
| TTAGATATTAGTGATGCGTT+TGG | + | chr6.4:20979264-20979283 | MS.gene81493:intron | 30.0% | |
| ! | AAGCTGTTGCATTTTCATAT+AGG | - | chr6.4:20980485-20980504 | None:intergenic | 30.0% |
| ! | CGTCTTTTGAGCTAATTTTT+GGG | + | chr6.4:20979526-20979545 | MS.gene81493:intron | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | + | chr6.4:20979166-20979185 | MS.gene81493:CDS | 30.0% |
| ! | TCGTCTTTTGAGCTAATTTT+TGG | + | chr6.4:20979525-20979544 | MS.gene81493:intron | 30.0% |
| ! | TCTTTTTGTTGGATTGAACA+AGG | + | chr6.4:20979165-20979184 | MS.gene81493:CDS | 30.0% |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | + | chr6.4:20981052-20981071 | MS.gene81493:intron | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+TGG | + | chr6.4:20979639-20979658 | MS.gene81493:intron | 30.0% |
| TCAAATAAGCTCATCCAAAC+AGG | + | chr6.4:20980246-20980265 | MS.gene81493:intron | 35.0% | |
| TGTTGTTACTAAGAAGGAGT+TGG | + | chr6.4:20979192-20979211 | MS.gene81493:CDS | 35.0% | |
| ! | CATTTTCGTTGCAATGCAAA+TGG | + | chr6.4:20979933-20979952 | MS.gene81493:intron | 35.0% |
| ! | GGCACTGTTTTACAATAACA+TGG | + | chr6.4:20980312-20980331 | MS.gene81493:intron | 35.0% |
| ! | GTTTAGATTTTGCGTTGTGT+TGG | + | chr6.4:20979833-20979852 | MS.gene81493:intron | 35.0% |
| ! | TTTTATAGTTAGGCCCTCTT+TGG | + | chr6.4:20979997-20980016 | MS.gene81493:intron | 35.0% |
| AAAGTTGCCAAGAGAAAGCT+CGG | + | chr6.4:20980882-20980901 | MS.gene81493:CDS | 40.0% | |
| AGATCGTTTGTGAGACTGTT+TGG | - | chr6.4:20980210-20980229 | None:intergenic | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | + | chr6.4:20980840-20980859 | MS.gene81493:CDS | 40.0% | |
| CACATAACAAATGGCCTGTT+TGG | - | chr6.4:20980263-20980282 | None:intergenic | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | - | chr6.4:20980910-20980929 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | - | chr6.4:20980956-20980975 | None:intergenic | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | + | chr6.4:20980854-20980873 | MS.gene81493:CDS | 40.0% | |
| GATCGTTTGTGAGACTGTTT+GGG | - | chr6.4:20980209-20980228 | None:intergenic | 40.0% | |
| GGGTCATGTTGTTACTAAGA+AGG | + | chr6.4:20979186-20979205 | MS.gene81493:CDS | 40.0% | |
| TCAGTGATACGCTTCTCATA+AGG | - | chr6.4:20980828-20980847 | None:intergenic | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | + | chr6.4:20980853-20980872 | MS.gene81493:CDS | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | + | chr6.4:20980845-20980864 | MS.gene81493:CDS | 40.0% | |
| TTGGTCCTAGTCCTAATATG+CGG | + | chr6.4:20980730-20980749 | MS.gene81493:intron | 40.0% | |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | + | chr6.4:20980291-20980310 | MS.gene81493:intron | 40.0% |
| !! | GCTGTTTTCATGAGCTGTTT+TGG | + | chr6.4:20980121-20980140 | MS.gene81493:intron | 40.0% |
| !!! | GAGCTAATTTTTGGGTTCAG+AGG | + | chr6.4:20979534-20979553 | MS.gene81493:intron | 40.0% |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | - | chr6.4:20980758-20980777 | None:intergenic | 40.0% |
| !!! | GGAGTCTATTTTTTGCCCTT+TGG | + | chr6.4:20980341-20980360 | MS.gene81493:intron | 40.0% |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | + | chr6.4:20981057-20981076 | MS.gene81493:intron | 40.0% |
| CCAACAAAAAGACCCGTACT+TGG | - | chr6.4:20979157-20979176 | None:intergenic | 45.0% | |
| CTAAACCCTCTAGCCGTAAA+GGG | + | chr6.4:20979218-20979237 | MS.gene81493:CDS | 45.0% | |
| GCGTATCACTGAATTGCTGA+AGG | + | chr6.4:20980836-20980855 | MS.gene81493:CDS | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | - | chr6.4:20980911-20980930 | None:intergenic | 45.0% | |
| TAAACCCTCTAGCCGTAAAG+GGG | + | chr6.4:20979219-20979238 | MS.gene81493:CDS | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | + | chr6.4:20979154-20979173 | MS.gene81493:CDS | 45.0% |
| !! | TGTTCAAGGCACCGCATATT+AGG | - | chr6.4:20980744-20980763 | None:intergenic | 45.0% |
| ATGGGTTCCGAGCTTTCTCT+TGG | - | chr6.4:20980892-20980911 | None:intergenic | 50.0% | |
| CATACCCCTTTACGGCTAGA+GGG | - | chr6.4:20979226-20979245 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | - | chr6.4:20980922-20980941 | None:intergenic | 50.0% | |
| CCTAAACCCTCTAGCCGTAA+AGG | + | chr6.4:20979217-20979236 | MS.gene81493:CDS | 50.0% | |
| CCTTTACGGCTAGAGGGTTT+AGG | - | chr6.4:20979220-20979239 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | - | chr6.4:20980953-20980972 | None:intergenic | 50.0% | |
| GCAAGCGTGTGCACTTTGTA+AGG | + | chr6.4:20980772-20980791 | MS.gene81493:CDS | 50.0% | |
| TCATACCCCTTTACGGCTAG+AGG | - | chr6.4:20979227-20979246 | None:intergenic | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | - | chr6.4:20980738-20980757 | None:intergenic | 50.0% |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | + | chr6.4:20981060-20981079 | MS.gene81493:intron | 50.0% |
| AGACCCGTACTTGGCTGCTT+CGG | - | chr6.4:20979148-20979167 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | + | chr6.4:20980943-20980962 | MS.gene81493:CDS | 55.0% | |
| CCTCATCTTTCGGAGGACGT+TGG | - | chr6.4:20980946-20980965 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | + | chr6.4:20980788-20980807 | MS.gene81493:CDS | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | + | chr6.4:20980914-20980933 | MS.gene81493:CDS | 55.0% |
| AACCTCATCCGCGAGGTAGC+TGG | + | chr6.4:20980795-20980814 | MS.gene81493:CDS | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | - | chr6.4:20980806-20980825 | None:intergenic | 60.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | - | chr6.4:20980800-20980819 | None:intergenic | 65.0% | |
| GCGCCGAAGCAGCCAAGTAC+GGG | + | chr6.4:20979142-20979161 | MS.gene81493:CDS | 65.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | + | chr6.4:20979141-20979160 | MS.gene81493:CDS | 65.0% |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | + | chr6.4:20981066-20981085 | MS.gene81493:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 20979139 | 20981104 | 20979139 | ID=MS.gene81493 |
| chr6.4 | mRNA | 20979139 | 20981104 | 20979139 | ID=MS.gene81493.t1;Parent=MS.gene81493 |
| chr6.4 | exon | 20979139 | 20979240 | 20979139 | ID=MS.gene81493.t1.exon1;Parent=MS.gene81493.t1 |
| chr6.4 | CDS | 20979139 | 20979240 | 20979139 | ID=cds.MS.gene81493.t1;Parent=MS.gene81493.t1 |
| chr6.4 | exon | 20980765 | 20980964 | 20980765 | ID=MS.gene81493.t1.exon2;Parent=MS.gene81493.t1 |
| chr6.4 | CDS | 20980765 | 20980964 | 20980765 | ID=cds.MS.gene81493.t1;Parent=MS.gene81493.t1 |
| chr6.4 | exon | 20981074 | 20981104 | 20981074 | ID=MS.gene81493.t1.exon3;Parent=MS.gene81493.t1 |
| chr6.4 | CDS | 20981074 | 20981104 | 20981074 | ID=cds.MS.gene81493.t1;Parent=MS.gene81493.t1 |
| Gene Sequence |
| Protein sequence |
