Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87309.t1 | GAU48477.1 | 100 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 7.70E-51 | 209.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87309.t1 | Q9LZ57 | 82.7 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 4.0e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87309.t1 | A0A2Z6PQF7 | 100.0 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 5.6e-51 | 209.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene87309 | 0.823647 | 1.24E-53 | -1.69E-46 |
| MS.gene050290 | MS.gene87309 | 0.884315 | 2.13E-71 | -1.69E-46 |
| MS.gene050916 | MS.gene87309 | 0.806619 | 7.53E-50 | -1.69E-46 |
| MS.gene054937 | MS.gene87309 | 0.893541 | 5.71E-75 | -1.69E-46 |
| MS.gene056917 | MS.gene87309 | 0.856531 | 3.02E-62 | -1.69E-46 |
| MS.gene057052 | MS.gene87309 | 0.823565 | 1.29E-53 | -1.69E-46 |
| MS.gene057092 | MS.gene87309 | 0.808394 | 3.17E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene87309 | 0.806283 | 8.87E-50 | -1.69E-46 |
| MS.gene057206 | MS.gene87309 | 0.810511 | 1.11E-50 | -1.69E-46 |
| MS.gene057235 | MS.gene87309 | 0.814464 | 1.52E-51 | -1.69E-46 |
| MS.gene058364 | MS.gene87309 | 0.804158 | 2.47E-49 | -1.69E-46 |
| MS.gene060856 | MS.gene87309 | 0.856802 | 2.51E-62 | -1.69E-46 |
| MS.gene061145 | MS.gene87309 | 0.844107 | 9.28E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061166 | MS.gene87309 | PPI |
| MS.gene87309 | MS.gene49109 | PPI |
| MS.gene87309 | MS.gene98171 | PPI |
| MS.gene87309 | MS.gene95828 | PPI |
| MS.gene87309 | MS.gene006276 | PPI |
| MS.gene87309 | MS.gene83961 | PPI |
| MS.gene87309 | MS.gene81493 | PPI |
| MS.gene92142 | MS.gene87309 | PPI |
| MS.gene87309 | MS.gene59609 | PPI |
| MS.gene87309 | MS.gene34149 | PPI |
| MS.gene87309 | MS.gene79721 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87309.t1 | MTR_1g100960 | 96.396 | 111 | 3 | 1 | 1 | 110 | 1 | 111 | 3.83e-71 | 207 |
| MS.gene87309.t1 | MTR_6g053730 | 98.198 | 111 | 1 | 1 | 1 | 110 | 1 | 111 | 9.95e-71 | 206 |
| MS.gene87309.t1 | MTR_1g100960 | 97.030 | 101 | 3 | 0 | 1 | 101 | 1 | 101 | 9.27e-67 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87309.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene87309.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene87309.t1 | AT3G53740 | 80.909 | 110 | 21 | 0 | 1 | 110 | 1 | 110 | 7.51e-58 | 174 |
| MS.gene87309.t1 | AT5G02450 | 82.692 | 104 | 18 | 0 | 7 | 110 | 3 | 106 | 3.67e-56 | 169 |
| MS.gene87309.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene87309.t1 | AT2G37600 | 83.654 | 104 | 16 | 1 | 8 | 110 | 8 | 111 | 1.77e-55 | 168 |
| MS.gene87309.t1 | AT3G53740 | 72.727 | 110 | 21 | 1 | 1 | 110 | 1 | 101 | 1.05e-48 | 150 |
Find 33 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6.1:+33014712 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6.1:+33014713 | None:intergenic |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6.1:+33014701 | None:intergenic |
| CCTTTACGGCTAGAGGGTTT+AGG | 0.305250 | 6.1:+33016559 | None:intergenic |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6.1:-33014554 | MS.gene87309:intron |
| CTAAACCCTCTAGCCGTAAA+GGG | 0.402747 | 6.1:-33016558 | MS.gene87309:CDS |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6.1:+33014731 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6.1:-33016635 | MS.gene87309:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6.1:+33014667 | None:intergenic |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6.1:-33014825 | MS.gene87309:CDS |
| CCTAAACCCTCTAGCCGTAA+AGG | 0.488599 | 6.1:-33016559 | MS.gene87309:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6.1:+33016631 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6.1:-33016634 | MS.gene87309:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6.1:-33014780 | MS.gene87309:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6.1:-33014767 | MS.gene87309:CDS |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6.1:-33014848 | MS.gene87309:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6.1:+33014823 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6.1:+33014795 | None:intergenic |
| TCATACCCCTTTACGGCTAG+AGG | 0.525898 | 6.1:+33016552 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.562117 | 6.1:-33016584 | MS.gene87309:CDS |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6.1:-33014775 | MS.gene87309:CDS |
| GGGACATGTTGTTACTAAGA+AGG | 0.568112 | 6.1:-33016590 | MS.gene87309:CDS |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6.1:-33014738 | MS.gene87309:CDS |
| CATACCCCTTTACGGCTAGA+GGG | 0.582186 | 6.1:+33016553 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6.1:+33014677 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6.1:-33014766 | MS.gene87309:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6.1:-33014784 | MS.gene87309:CDS |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6.1:-33014677 | MS.gene87309:intron |
| TAAACCCTCTAGCCGTAAAG+GGG | 0.659101 | 6.1:-33016557 | MS.gene87309:intron |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6.1:+33014670 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6.1:+33014817 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6.1:-33014706 | MS.gene87309:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6.1:-33014832 | MS.gene87309:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATTAACAAAAATA+TGG | + | chr6.1:33016077-33016096 | None:intergenic | 10.0% |
| !! | TTATTTAAAAGACATTATTT+GGG | - | chr6.1:33016094-33016113 | MS.gene87309:intron | 10.0% |
| !!! | AGAAATTTTTTTTTATAGTT+AGG | - | chr6.1:33015508-33015527 | MS.gene87309:intron | 10.0% |
| !! | ATAATACAATTGAAATCAAA+AGG | + | chr6.1:33015884-33015903 | None:intergenic | 15.0% |
| !! | CTTATTTAAAAGACATTATT+TGG | - | chr6.1:33016093-33016112 | MS.gene87309:intron | 15.0% |
| !! | TAATACAATTGAAATCAAAA+GGG | + | chr6.1:33015883-33015902 | None:intergenic | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | - | chr6.1:33015608-33015627 | MS.gene87309:intron | 15.0% |
| !!! | AGTTTAGTTTTAATTTTTGT+TGG | - | chr6.1:33015407-33015426 | MS.gene87309:intron | 15.0% |
| !!! | ATTTTTTATTGTAATAGTGA+AGG | - | chr6.1:33015123-33015142 | MS.gene87309:intron | 15.0% |
| !!! | GGTATGATTTTTTATTTTTA+GGG | - | chr6.1:33014639-33014658 | MS.gene87309:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | - | chr6.1:33016565-33016584 | MS.gene87309:CDS | 15.0% |
| !!! | TTCAAGTTTAGTTAATTTTT+GGG | - | chr6.1:33015220-33015239 | MS.gene87309:intron | 15.0% |
| !!! | TTTAGGTTTAGTTAATTTTT+GGG | - | chr6.1:33014746-33014765 | MS.gene87309:CDS | 15.0% |
| !!! | TTTCAAGTTTAGTTAATTTT+TGG | - | chr6.1:33015219-33015238 | MS.gene87309:intron | 15.0% |
| !!! | TTTTAATTTTCATTTGTGTT+TGG | - | chr6.1:33014793-33014812 | MS.gene87309:CDS | 15.0% |
| !!! | TTTTAGGTTTAGTTAATTTT+TGG | - | chr6.1:33014745-33014764 | MS.gene87309:CDS | 15.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | + | chr6.1:33016559-33016578 | None:intergenic | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | - | chr6.1:33016238-33016257 | MS.gene87309:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | + | chr6.1:33016558-33016577 | None:intergenic | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | - | chr6.1:33016125-33016144 | MS.gene87309:intron | 20.0% |
| !! | ATTGTTCATTTATCATCTAA+TGG | + | chr6.1:33015486-33015505 | None:intergenic | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | - | chr6.1:33014853-33014872 | MS.gene87309:CDS | 20.0% |
| !! | GTTATTAATTGTAATAGTGA+AGG | - | chr6.1:33015302-33015321 | MS.gene87309:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | - | chr6.1:33016237-33016256 | MS.gene87309:intron | 20.0% |
| !!! | ATTTGAAGTGTAGTTAATTT+TGG | - | chr6.1:33015056-33015075 | MS.gene87309:intron | 20.0% |
| !!! | GATAAATGAGAATCTATTTT+AGG | - | chr6.1:33014729-33014748 | MS.gene87309:CDS | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | - | chr6.1:33014638-33014657 | MS.gene87309:intron | 20.0% |
| !!! | TGTTTTTTGAGCTAATTTTT+GGG | - | chr6.1:33014925-33014944 | MS.gene87309:intron | 20.0% |
| !!! | TTAATTTTTGGGTATATTGA+TGG | - | chr6.1:33014757-33014776 | MS.gene87309:CDS | 20.0% |
| !!! | TTGTTTTTTGAGCTAATTTT+TGG | - | chr6.1:33014924-33014943 | MS.gene87309:intron | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | - | chr6.1:33015842-33015861 | MS.gene87309:intron | 20.0% |
| !!! | TTTGAAGTGTAGTTAATTTT+GGG | - | chr6.1:33015057-33015076 | MS.gene87309:intron | 20.0% |
| ! | ACATCAAATCACATAACAAA+TGG | + | chr6.1:33015794-33015813 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | + | chr6.1:33015913-33015932 | None:intergenic | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | + | chr6.1:33014633-33014652 | None:intergenic | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | + | chr6.1:33016014-33016033 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | + | chr6.1:33015914-33015933 | None:intergenic | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | - | chr6.1:33016266-33016285 | MS.gene87309:intron | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+AGG | - | chr6.1:33016138-33016157 | MS.gene87309:intron | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | - | chr6.1:33014707-33014726 | MS.gene87309:CDS | 25.0% |
| !! | TGAAACTATCTTGTGATTTT+TGG | - | chr6.1:33015926-33015945 | MS.gene87309:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | - | chr6.1:33016608-33016627 | MS.gene87309:CDS | 25.0% |
| !!! | TTGTATTATTTTTAGCCCTT+TGG | - | chr6.1:33015895-33015914 | MS.gene87309:intron | 25.0% |
| !!! | TTTTGACTTTGATTTGTGTT+TGG | - | chr6.1:33015013-33015032 | MS.gene87309:intron | 25.0% |
| !!! | TTTTGATTTCGGTTAATGTT+TGG | - | chr6.1:33015170-33015189 | MS.gene87309:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | - | chr6.1:33016538-33016557 | MS.gene87309:intron | 25.0% |
| ATAAAGTTGCTTATCCAAAC+AGG | + | chr6.1:33015535-33015554 | None:intergenic | 30.0% | |
| ATATGAAAATGCAACAGCTT+TGG | - | chr6.1:33016039-33016058 | MS.gene87309:intron | 30.0% | |
| TAAAGTTGCTTATCCAAACA+GGG | + | chr6.1:33015534-33015553 | None:intergenic | 30.0% | |
| ! | AAGCTGTTGCATTTTCATAT+AGG | + | chr6.1:33016039-33016058 | None:intergenic | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | - | chr6.1:33014565-33014584 | MS.gene87309:intron | 30.0% |
| ! | GTTTAGATTTTGCTTTGTGT+TGG | - | chr6.1:33015353-33015372 | MS.gene87309:intron | 30.0% |
| ! | TCTTTTTGTTGGATTGAACA+AGG | - | chr6.1:33014564-33014583 | MS.gene87309:intron | 30.0% |
| ! | TTCGGTTAATGTTTGGAATT+TGG | - | chr6.1:33015177-33015196 | MS.gene87309:intron | 30.0% |
| !! | CTATCTTGTGATTTTTGGAA+TGG | - | chr6.1:33015931-33015950 | MS.gene87309:intron | 30.0% |
| !! | CTTTGATTTGTGTTTGGAAT+TGG | - | chr6.1:33015019-33015038 | MS.gene87309:intron | 30.0% |
| !! | TTAGATTTTAGTGATGCGTT+TGG | - | chr6.1:33014663-33014682 | MS.gene87309:intron | 30.0% |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | - | chr6.1:33016607-33016626 | MS.gene87309:CDS | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+CGG | - | chr6.1:33015159-33015178 | MS.gene87309:intron | 30.0% |
| TCAAATAAGCTCATCCAAAC+AGG | - | chr6.1:33015768-33015787 | MS.gene87309:intron | 35.0% | |
| TGTTGTTACTAAGAAGGAGT+TGG | - | chr6.1:33014591-33014610 | MS.gene87309:intron | 35.0% | |
| ! | AGATAGTTTGTGAGACTGTT+TGG | + | chr6.1:33015732-33015751 | None:intergenic | 35.0% |
| ! | GATAGTTTGTGAGACTGTTT+GGG | + | chr6.1:33015731-33015750 | None:intergenic | 35.0% |
| ! | GGCACTGTTTTACAATAACA+TGG | - | chr6.1:33015834-33015853 | MS.gene87309:intron | 35.0% |
| ! | TTTTATAGTTAGGCCCTGTT+TGG | - | chr6.1:33015518-33015537 | MS.gene87309:intron | 35.0% |
| !! | CTTTTTCGTTGCAATGCAAA+TGG | - | chr6.1:33015453-33015472 | MS.gene87309:intron | 35.0% |
| AAAGTTGCCAAGAGAAAGCT+CGG | - | chr6.1:33016437-33016456 | MS.gene87309:intron | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | - | chr6.1:33016395-33016414 | MS.gene87309:intron | 40.0% | |
| CACATAACAAATGGCCTGTT+TGG | + | chr6.1:33015785-33015804 | None:intergenic | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | + | chr6.1:33016465-33016484 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | + | chr6.1:33016511-33016530 | None:intergenic | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | - | chr6.1:33016409-33016428 | MS.gene87309:intron | 40.0% | |
| GAGATTAGTGATGCATTTGC+AGG | - | chr6.1:33015247-33015266 | MS.gene87309:intron | 40.0% | |
| GGGACATGTTGTTACTAAGA+AGG | - | chr6.1:33014585-33014604 | MS.gene87309:intron | 40.0% | |
| TCAGTGATACGCTTCTCATA+AGG | + | chr6.1:33016383-33016402 | None:intergenic | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | - | chr6.1:33016408-33016427 | MS.gene87309:intron | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | - | chr6.1:33016400-33016419 | MS.gene87309:intron | 40.0% | |
| TTGGTCCTAGTCCTAATATG+CGG | - | chr6.1:33016285-33016304 | MS.gene87309:intron | 40.0% | |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | - | chr6.1:33015813-33015832 | MS.gene87309:intron | 40.0% |
| !! | GCTGTTTTCATGAGCTGTTT+TGG | - | chr6.1:33015643-33015662 | MS.gene87309:intron | 40.0% |
| !!! | GAGCTAATTTTTGGGTTCAG+AGG | - | chr6.1:33014933-33014952 | MS.gene87309:intron | 40.0% |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | + | chr6.1:33016313-33016332 | None:intergenic | 40.0% |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | - | chr6.1:33016612-33016631 | MS.gene87309:CDS | 40.0% |
| CCAACAAAAAGACCCGTACT+TGG | + | chr6.1:33014556-33014575 | None:intergenic | 45.0% | |
| CTAAACCCTCTAGCCGTAAA+GGG | - | chr6.1:33014617-33014636 | MS.gene87309:intron | 45.0% | |
| GCGTATCACTGAATTGCTGA+AGG | - | chr6.1:33016391-33016410 | MS.gene87309:intron | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | + | chr6.1:33016466-33016485 | None:intergenic | 45.0% | |
| TAAACCCTCTAGCCGTAAAG+GGG | - | chr6.1:33014618-33014637 | MS.gene87309:intron | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | - | chr6.1:33014553-33014572 | MS.gene87309:intron | 45.0% |
| !! | TGTTCAAGGCACCGCATATT+AGG | + | chr6.1:33016299-33016318 | None:intergenic | 45.0% |
| ATGGGTTCCGAGCTTTCTCT+TGG | + | chr6.1:33016447-33016466 | None:intergenic | 50.0% | |
| CATACCCCTTTACGGCTAGA+GGG | + | chr6.1:33014625-33014644 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | + | chr6.1:33016477-33016496 | None:intergenic | 50.0% | |
| CCTAAACCCTCTAGCCGTAA+AGG | - | chr6.1:33014616-33014635 | MS.gene87309:intron | 50.0% | |
| CCTTTACGGCTAGAGGGTTT+AGG | + | chr6.1:33014619-33014638 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | + | chr6.1:33016508-33016527 | None:intergenic | 50.0% | |
| GCAAGCGTGTGCACTTTGTA+AGG | - | chr6.1:33016327-33016346 | MS.gene87309:intron | 50.0% | |
| TCATACCCCTTTACGGCTAG+AGG | + | chr6.1:33014626-33014645 | None:intergenic | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | + | chr6.1:33016293-33016312 | None:intergenic | 50.0% |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | - | chr6.1:33016615-33016634 | MS.gene87309:CDS | 50.0% |
| AGACCCGTACTTGGCTGCTT+CGG | + | chr6.1:33014547-33014566 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | - | chr6.1:33016498-33016517 | MS.gene87309:intron | 55.0% | |
| CCTCATCTTTCGGAGGACGT+TGG | + | chr6.1:33016501-33016520 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | - | chr6.1:33016343-33016362 | MS.gene87309:intron | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | - | chr6.1:33016469-33016488 | MS.gene87309:intron | 55.0% |
| AACCTCATCCGCGAGGTAGC+TGG | - | chr6.1:33016350-33016369 | MS.gene87309:intron | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | + | chr6.1:33016361-33016380 | None:intergenic | 60.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | + | chr6.1:33016355-33016374 | None:intergenic | 65.0% | |
| GCGCCGAAGCAGCCAAGTAC+GGG | - | chr6.1:33014541-33014560 | MS.gene87309:CDS | 65.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | - | chr6.1:33014540-33014559 | MS.gene87309:CDS | 65.0% |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | - | chr6.1:33016621-33016640 | MS.gene87309:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 33014538 | 33016659 | 33014538 | ID=MS.gene87309 |
| chr6.1 | mRNA | 33014538 | 33016659 | 33014538 | ID=MS.gene87309.t1;Parent=MS.gene87309 |
| chr6.1 | exon | 33016558 | 33016659 | 33016558 | ID=MS.gene87309.t1.exon1;Parent=MS.gene87309.t1 |
| chr6.1 | CDS | 33016558 | 33016659 | 33016558 | ID=cds.MS.gene87309.t1;Parent=MS.gene87309.t1 |
| chr6.1 | exon | 33014678 | 33014877 | 33014678 | ID=MS.gene87309.t1.exon2;Parent=MS.gene87309.t1 |
| chr6.1 | CDS | 33014678 | 33014877 | 33014678 | ID=cds.MS.gene87309.t1;Parent=MS.gene87309.t1 |
| chr6.1 | exon | 33014538 | 33014568 | 33014538 | ID=MS.gene87309.t1.exon3;Parent=MS.gene87309.t1 |
| chr6.1 | CDS | 33014538 | 33014568 | 33014538 | ID=cds.MS.gene87309.t1;Parent=MS.gene87309.t1 |
| Gene Sequence |
| Protein sequence |
