AlfalfaGEDB | MS.gene96194

M. sativa cultivar XinJiangDaYe / MS.gene96194

KEGG: -
GO: GO:0003674 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0071704 GO:0072330 GO:0072341 GO:1901576
PFAM: PF00550.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96194.t1	XP_013462674.1	96.4	139	5	0	1	139	1	139	2.50E-62	248.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96194.t1	P93092	66.2	139	43	2	1	139	1	135	1.8e-37	156.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96194.t1	B7FHC3	96.4	139	5	0	1	139	1	139	1.8e-62	248.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049306	MS.gene96194	0.815922	7.21E-52	-1.69E-46
MS.gene050747	MS.gene96194	-0.80993	1.48E-50	-1.69E-46
MS.gene051838	MS.gene96194	-0.81675	4.71E-52	-1.69E-46
MS.gene052164	MS.gene96194	-0.816056	6.73E-52	-1.69E-46
MS.gene052664	MS.gene96194	0.824595	7.41E-54	-1.69E-46
MS.gene052666	MS.gene96194	0.816676	4.89E-52	-1.69E-46
MS.gene053626	MS.gene96194	-0.806826	6.81E-50	-1.69E-46
MS.gene054662	MS.gene96194	0.801133	1.04E-48	-1.69E-46
MS.gene056040	MS.gene96194	-0.810483	1.13E-50	-1.69E-46
MS.gene056166	MS.gene96194	-0.810518	1.11E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96194.t1	MTR_2g020360	96.403	139	5	0	1	139	1	139	1.38e-95	271
MS.gene96194.t1	MTR_2g020360	94.964	139	7	0	1	139	1	139	1.20e-93	266
MS.gene96194.t1	MTR_2g020360	94.245	139	8	0	1	139	1	139	1.74e-84	243
MS.gene96194.t1	MTR_4g118750	56.204	137	40	3	9	139	1	123	9.15e-42	136
MS.gene96194.t1	MTR_8g099920	47.518	141	66	3	1	138	1	136	7.53e-39	128
MS.gene96194.t1	MTR_8g099920	46.853	143	66	4	1	138	1	138	8.70e-37	123
MS.gene96194.t1	MTR_1g081920	66.667	78	21	2	58	133	12	86	4.00e-25	92.0
MS.gene96194.t1	MTR_8g099920	41.905	105	51	4	1	100	1	100	1.87e-16	70.5
MS.gene96194.t1	MTR_8g073750	96.774	31	1	0	87	117	23	53	1.50e-12	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96194.t1	AT4G25050	54.348	138	56	2	1	138	1	131	3.25e-40	131
MS.gene96194.t1	AT1G54630	51.049	143	58	3	1	139	1	135	6.02e-37	123
MS.gene96194.t1	AT4G25050	50.000	150	56	3	1	138	1	143	2.83e-36	122
MS.gene96194.t1	AT1G54580	58.333	108	37	1	32	139	36	135	5.33e-36	120
MS.gene96194.t1	AT5G27200	64.773	88	31	0	51	138	50	137	2.19e-34	117
MS.gene96194.t1	AT3G05020	53.571	112	44	2	27	138	33	136	4.95e-34	116
MS.gene96194.t1	AT1G54630	45.000	100	49	2	1	99	1	95	1.34e-16	70.9

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Find 44 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTTGAATCATCTGACA+GGG	0.652394	2.2:+64712578	None:intergenic
AAGAGAATCAGCTCCAAGTG+CGG	0.701784	2.2:+64712536	None:intergenic
ACATGAAACCGACGTCCTTT+TGG	0.380510	2.2:+64713370	None:intergenic
AGACATGGAGGTTGTGGTGA+TGG	0.479192	2.2:+64713799	None:intergenic
AGTTCCTTCCCTTAATTGAA+AGG	0.475850	2.2:+64713413	None:intergenic
ATACCATAGATTGGTTGGAG+AGG	0.645014	2.2:+64713768	None:intergenic
ATGGGACTTGAGGAGGAATT+TGG	0.306245	2.2:-64711314	MS.gene96194:CDS
ATTGAAAGGGAAACTGAACT+TGG	0.450513	2.2:+64713427	None:intergenic
CACACCTTCTGCACAGTCTC+TGG	0.366899	2.2:+64712624	None:intergenic
CATGTCAGCAGCTTCTTGAA+CGG	0.584545	2.2:+64711253	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAGAGACAAAAATAAC+AGG	+	chr2.2:64712705-64712724	None:intergenic	30.0%
AGAGACAAAAATAACAGGAA+GGG	+	chr2.2:64712700-64712719	None:intergenic	30.0%
TAAAAAACATCATGTCAAGC+AGG	+	chr2.2:64713483-64713502	None:intergenic	30.0%
TAAGTTCTCATATTTGACCA+TGG	-	chr2.2:64712797-64712816	MS.gene96194:intron	30.0%
TCAACAGATAACAACAAAAC+AGG	+	chr2.2:64712201-64712220	None:intergenic	30.0%
TCAGTTTCCCTTTCAATTAA+GGG	-	chr2.2:64711608-64711627	MS.gene96194:intron	30.0%
TGACATAGTCAAGAAACAAT+TGG	-	chr2.2:64712428-64712447	MS.gene96194:intron	30.0%
TGGGCTAATCTATAAATTTG+AGG	+	chr2.2:64711916-64711935	None:intergenic	30.0%
TTCAGTTTCCCTTTCAATTA+AGG	-	chr2.2:64711607-64711626	MS.gene96194:intron	30.0%
TTCTAACTTGAAGCTAGAAT+TGG	-	chr2.2:64711862-64711881	MS.gene96194:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	64711223	64713828	64711223	ID=MS.gene96194
chr2.2	mRNA	64711223	64713828	64711223	ID=MS.gene96194.t1;Parent=MS.gene96194
chr2.2	exon	64713772	64713828	64713772	ID=MS.gene96194.t1.exon1;Parent=MS.gene96194.t1
chr2.2	CDS	64713772	64713828	64713772	ID=cds.MS.gene96194.t1;Parent=MS.gene96194.t1
chr2.2	exon	64713360	64713473	64713360	ID=MS.gene96194.t1.exon2;Parent=MS.gene96194.t1
chr2.2	CDS	64713360	64713473	64713360	ID=cds.MS.gene96194.t1;Parent=MS.gene96194.t1
chr2.2	exon	64712530	64712652	64712530	ID=MS.gene96194.t1.exon3;Parent=MS.gene96194.t1
chr2.2	CDS	64712530	64712652	64712530	ID=cds.MS.gene96194.t1;Parent=MS.gene96194.t1
chr2.2	exon	64711223	64711348	64711223	ID=MS.gene96194.t1.exon4;Parent=MS.gene96194.t1
chr2.2	CDS	64711223	64711348	64711223	ID=cds.MS.gene96194.t1;Parent=MS.gene96194.t1

Gene Sequence

>MS.gene96194

ATGGCTTCCATCACCACAACCTCCATGTCTCTCATCTCCCTCTCCAACCAATCTATGGTATGCTGCAATAACCCCTTTTCATTTTCTTAATCTTTTTATCGATTAATTATTCACCCTTGTTTATTGGATCTGTTAAATCAAATGCTGTCATGTTAATTAACAATAAAGATTTGTTTTTATCTGTTTTGATGCTTGTCGGTGTAATTTGGATATGTTGGTATCATAGTGATTTTTTGTTGATTTATGATCCTGACAAATTATGATTAGTGATGTGTAATGTTTATGGTTATTGATCCTAATTATGTTTTAGTGGTTAGATTAATTTGGTTATTGTTGGATGTGAAAACAAAAACAGGTTTCTTGTGCTAGGATCTCTGGCCCAAGTTCAGTTTCCCTTTCAATTAAGGGAAGGAACTTTCCATCTATTGCTTTGCAGCCAAAAGGACGTCGGTTTCATGTCACATGCGCGGTAATATTTTAAGCCATAATCTTTATAGAGTTGTATAATTGATCTTGACATGTTTGGATATTGTTGTGTAAAATTGATCTTGACATGTTTGGATGTTGTTGTGTAAAATTGATTTTGACATGTTTAGTCGTTGTCGAATAAATTTGATTTTGCATCTAGATTAATCTTGATTCTAACTTGAAGCTAGAATTGGAGCTTTTGCCTCCACAATTGAATTTGAGCCTCAAATTTATAGATTAGCCCACTCTTACATGAATGTATATAAACGTAAATCACTTTACATTCAACTCATTTTAATCACAATCAATTTTACAAAATTAGTTTATTCAAAATCATTTTTATCACTGCAGAAGCAACCAAACACTTAGTTATATCATCTCTATTTCTTTCGTTTGAGTATCTTTATGCTTAGCCTGGGTTTTGGATTGTGGAGAGTTCATTTTTCGTCTTTAGTTTCTGGTAATGAAAGTCCATATTTGTACCGAGTTATCTGCATTACAAAATCTCCTGTTTTGTTGTTATCTGTTGAAGATTTTCATTTCTGTTGGAGTTATCAATGATGCCTTATGGTTATAATAACTATTGATTACATGCTTAGAATTCCAGAGAACTAAAACAAAATTATTGGGCAGTTGTAATGTGGACTGATGCTGACCTTTTGTGATATTTAAGATGATATAACAAGAATGGACGTTAATTTTGTGCAGGCTAAACCAGAGACTGTGCAGAAGGTGTGTGACATAGTCAAGAAACAATTGGCCCTGTCAGATGATTCAACTGTTACTGGAGAGTCTAAATTTACCGCACTTGGAGCTGATTCTCTTGACACGGTATATTTATATTTCTTATCTACTAATTACTGTAGTGGAAAATTGAGAATTTGCAATACTTAATCATTCAAAAAAATCTTAACTTTTCAGTTTTTGCTATTGTTGATTGTATCTACTAGCCACTTGATATTTGAACTATACATACACATGTTTTGATGTTAGTTAGATTTTTTTTCCCTTCCTGTTATTTTTGTCTCTCTTCTCATGATTTGTTGGAGCAAGAGGTTTTTTATAATGAGAAAGTGTCGATGCATTGTATAAAATACAAGCGCTTCTAAGTTCTCATATTTGACCATGGCATCCTGTGATGGGATTCTCTCCTGAAATCCATGATCATCCTTTTAGTGGTTATTAGTTTCTCTTTTAACATAAGTATTTGATGTTATGGTAAGAGAAAGAGTTAAGCTGCACTTCAGTACTGAAATAAACTGGAAATACATACAAGTAACTTCATGTGTTCATTGTTAACTATATGCAAGCAAGCTATATTTTAGTTTCTAATCTACAGCCTATATTTGTTGCGTCTCTGATAAGATAAAATGCCACTGATTGTCAATCGAGTCTCGTTAACAGTTTACTATTACTGTGTCAATTATAAAACATCTCAGTTTGTTTAAGCAATTTTAGTTTTTTTTCTTTCCTTGGTTGTCTGAGGGCATTTTGGATTGATTTATTTGAGCTTATCTACATGCATATAAGTTCTTGTGACTGTTTGAAAGAGCTTATGAAAACAACTTTTGACATGATCATAAGCTTTTTTCAGCTATTTTCATAAGCTCTCCTAGATACCTTATGAAAATAGCTTATATAGATTACATGAAAATGGATTGACTTGTTATTGGAAGATCATATACATTAACACTTATATGAAGAGCACTTGTGCTATAAACACCTTTTTTTACAAAATACTATAAGTGCTTAATTAAGTTGTTTATCCAAACAGAGTCCTGGTCTGTATCCTGCTTGACATGATGTTTTTTAAAGAAATATGTTACTTTTTTGTGAAGTACCTATATTTCTATATGCCCGTACATTACACGACCCTTACTGCTTGAGCTATATGATCAAATGGCATGCTATATGTGATTATTTGATTCATATCAGGAAAATCAAAACAGTGTCTGGTTTACATTTTACGATCTTTTACCCGATTATTTACTTACATTTCAAGTTTTGTGCAGGTTGAGATTGTGATGGGACTTGAGGAGGAATTTGGCATTAGTGTGGAAGAAGAAAGTGCCCAGAGCATCACCACCGTTCAAGAAGCTGCTGACATGATTGACAAGCTTCTTGAGACCAAGGCTTAA

Protein sequence

>MS.gene96194.t1

MASITTTSMSLISLSNQSMVSCARISGPSSVSLSIKGRNFPSIALQPKGRRFHVTCAAKPETVQKVCDIVKKQLALSDDSTVTGESKFTALGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIDKLLETKA