AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98466

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98466.t1 MTR_5g028190 85.119 336 47 1 404 736 199 534 0.0 597
MS.gene98466.t1 MTR_5g028190 70.000 200 57 2 139 335 1 200 6.18e-83 274
MS.gene98466.t1 MTR_5g028130 76.036 338 74 3 404 735 1 337 3.42e-178 513
MS.gene98466.t1 MTR_5g028930 42.274 686 313 18 61 734 2 616 1.52e-143 435
MS.gene98466.t1 MTR_5g028450 65.541 296 93 3 445 733 1 294 8.37e-124 372
MS.gene98466.t1 MTR_5g028110 70.745 188 37 1 548 735 5 174 2.79e-84 265
MS.gene98466.t1 MTR_5g091220 34.080 625 347 19 120 733 31 601 3.76e-77 260
MS.gene98466.t1 MTR_5g028510 44.444 333 150 7 24 332 6 327 1.72e-72 239
MS.gene98466.t1 MTR_3g455790 29.208 606 361 15 120 716 33 579 9.16e-64 224
MS.gene98466.t1 MTR_3g055310 31.549 523 292 12 215 729 12 476 1.84e-63 220
MS.gene98466.t1 MTR_3g055310 32.812 512 278 13 226 729 48 501 3.11e-63 220
MS.gene98466.t1 MTR_3g055310 32.812 512 278 13 226 729 21 474 4.05e-63 219
MS.gene98466.t1 MTR_6g017215 56.614 189 82 0 540 728 1 189 1.15e-62 210
MS.gene98466.t1 MTR_2g438740 35.467 375 211 8 369 735 217 568 1.68e-62 220
MS.gene98466.t1 MTR_2g438740 31.953 169 101 7 119 285 41 197 4.96e-13 72.8
MS.gene98466.t1 MTR_3g055310 33.548 465 251 10 268 729 39 448 1.05e-61 215
MS.gene98466.t1 MTR_3g055310 33.259 451 243 9 282 729 1 396 3.52e-61 212
MS.gene98466.t1 MTR_3g055310 40.000 290 160 4 443 729 55 333 2.43e-59 205
MS.gene98466.t1 MTR_5g028690 50.505 198 93 1 548 740 44 241 2.73e-58 198
MS.gene98466.t1 MTR_2g438440 37.736 318 181 6 445 755 396 703 5.73e-55 201
MS.gene98466.t1 MTR_3g452020 26.997 626 379 16 120 737 33 588 1.96e-53 195
MS.gene98466.t1 MTR_2g438400 35.647 317 189 6 445 755 255 562 1.39e-51 189
MS.gene98466.t1 MTR_2g438700 36.519 293 178 5 445 732 399 688 2.21e-48 182
MS.gene98466.t1 MTR_2g438700 24.843 318 190 10 33 314 36 340 9.89e-11 65.9
MS.gene98466.t1 MTR_2g438720 35.000 320 188 8 445 755 401 709 3.00e-48 182
MS.gene98466.t1 MTR_2g438720 24.845 322 187 12 33 314 36 342 7.98e-12 69.3
MS.gene98466.t1 MTR_2g438760 34.812 293 184 4 446 733 271 561 1.17e-47 178
MS.gene98466.t1 MTR_2g438760 27.962 211 134 7 119 327 47 241 3.73e-12 70.1
MS.gene98466.t1 MTR_2g438640 35.811 296 183 4 445 736 401 693 1.20e-46 177
MS.gene98466.t1 MTR_2g438640 22.973 370 230 13 17 348 20 372 3.97e-12 70.1
MS.gene98466.t1 MTR_5g028830 40.154 259 135 8 300 547 39 288 1.37e-41 154
MS.gene98466.t1 MTR_2g438640 33.784 296 163 4 445 736 401 667 2.88e-41 161
MS.gene98466.t1 MTR_2g438640 22.973 370 230 13 17 348 20 372 3.18e-12 70.5
MS.gene98466.t1 MTR_3g452020 30.938 320 212 5 401 715 88 403 3.45e-41 156
MS.gene98466.t1 MTR_5g028900 50.649 154 64 2 548 701 5 146 3.69e-41 148
MS.gene98466.t1 MTR_5g028840 43.005 193 105 1 550 737 7 199 6.75e-41 149
MS.gene98466.t1 MTR_2g020510 36.496 274 161 4 445 715 390 653 6.25e-40 157
MS.gene98466.t1 MTR_2g017930 25.432 637 380 19 155 729 37 640 1.25e-38 153
MS.gene98466.t1 MTR_3g058570 33.876 307 177 6 444 734 83 379 5.64e-38 146
MS.gene98466.t1 MTR_5g085360 26.352 721 393 28 123 726 23 722 9.50e-37 148
MS.gene98466.t1 MTR_2g020450 33.910 289 183 5 445 729 393 677 1.78e-34 140
MS.gene98466.t1 MTR_2g020450 28.846 208 131 7 118 319 4 200 1.78e-12 71.2
MS.gene98466.t1 MTR_2g020470 33.577 274 149 4 445 715 392 635 4.57e-34 139
MS.gene98466.t1 MTR_2g020470 27.143 210 132 8 118 319 4 200 9.53e-11 65.9
MS.gene98466.t1 MTR_3g050500 29.450 309 204 6 432 729 414 719 1.18e-30 129
MS.gene98466.t1 MTR_2g438640 37.368 190 117 2 548 736 402 590 1.25e-29 125
MS.gene98466.t1 MTR_2g438640 22.078 462 284 18 17 440 20 443 6.88e-13 72.4
MS.gene98466.t1 MTR_3g051060 29.352 293 199 5 446 731 435 726 2.97e-29 124
MS.gene98466.t1 MTR_3g051060 29.108 213 126 7 123 320 28 230 9.88e-14 75.5
MS.gene98466.t1 MTR_5g028920 41.071 168 94 3 384 550 64 227 2.19e-28 115
MS.gene98466.t1 MTR_5g085350 31.507 292 191 5 445 729 424 713 4.87e-27 117
MS.gene98466.t1 MTR_5g085350 31.507 292 191 5 445 729 437 726 5.95e-27 117
MS.gene98466.t1 MTR_5g085340 30.068 296 198 4 445 732 443 737 3.71e-26 115
MS.gene98466.t1 MTR_1g113820 33.333 219 129 7 444 654 275 484 4.99e-21 98.2
MS.gene98466.t1 MTR_2g438470 40.741 135 74 3 490 621 366 497 3.97e-20 95.1
MS.gene98466.t1 MTR_1g113730 28.571 224 144 6 417 635 23 235 9.55e-17 83.2
MS.gene98466.t1 MTR_6g016185 30.151 199 118 8 473 667 16 197 3.70e-14 72.4
MS.gene98466.t1 MTR_3g055750 28.505 214 139 6 120 330 33 235 4.91e-14 75.1
MS.gene98466.t1 MTR_1g113760 22.857 315 218 8 436 741 231 529 3.40e-13 73.2
MS.gene98466.t1 MTR_3g058550 31.667 180 100 6 155 320 9 179 3.95e-13 69.7
MS.gene98466.t1 MTR_2g438580 39.474 76 45 1 559 634 2 76 8.78e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98466.t1 AT3G18670 35.846 650 356 19 99 733 35 638 1.57e-120 376
MS.gene98466.t1 AT3G18670 43.452 336 180 6 404 733 252 583 4.48e-84 279
MS.gene98466.t1 AT3G18670 34.348 230 125 10 99 319 35 247 3.46e-27 117
MS.gene98466.t1 AT5G04690 31.429 630 376 12 110 733 66 645 9.04e-83 277
MS.gene98466.t1 AT5G04700 30.658 623 377 13 119 733 80 655 4.58e-81 273
MS.gene98466.t1 AT5G04690 30.903 631 364 14 110 733 66 631 9.70e-78 263
MS.gene98466.t1 AT5G04680 30.094 638 398 19 119 733 67 679 9.67e-73 251
MS.gene98466.t1 AT5G04680 30.016 633 376 18 119 733 67 650 3.20e-71 246
MS.gene98466.t1 AT5G04680 29.226 633 367 18 119 733 67 636 6.58e-68 236
MS.gene98466.t1 AT5G04680 30.702 570 330 17 180 733 7 527 7.18e-68 234
MS.gene98466.t1 AT5G04730 30.756 582 337 15 167 733 58 588 2.92e-67 234
MS.gene98466.t1 AT5G35810 37.209 301 177 5 445 735 35 333 3.98e-58 201
MS.gene98466.t1 AT5G04690 31.285 537 331 14 215 733 95 611 1.17e-56 205
MS.gene98466.t1 AT5G04690 29.858 211 137 4 110 318 66 267 2.80e-17 86.7
MS.gene98466.t1 AT3G54065 45.349 172 85 2 534 696 8 179 1.55e-42 154
MS.gene98466.t1 AT5G04700 25.173 433 274 8 119 548 80 465 3.72e-33 134
MS.gene98466.t1 AT5G35830 30.286 175 109 5 107 278 73 237 1.44e-13 72.4

Find 164 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCATGCACTTCTCTTTC+AGG 0.124188 5.4:+18955164 None:intergenic
TTGCACTTGGCAGGATATTT+AGG 0.127030 5.4:-18954125 MS.gene98466:CDS
CCAAAGAATTCAAGAGTTTA+AGG 0.157617 5.4:-18954402 MS.gene98466:CDS
TGTATCACTGCAGAAATATT+TGG 0.219312 5.4:-18956126 MS.gene98466:intron
TTCACTTGCTATGCTCTTAA+AGG 0.220345 5.4:-18951568 MS.gene98466:CDS
CCTTAAACTCTTGAATTCTT+TGG 0.238324 5.4:+18954402 None:intergenic
CATATACCTTGCTCAATATC+TGG 0.238941 5.4:+18957459 None:intergenic
TAAAGAAGCCTGGAATAAAT+TGG 0.241875 5.4:-18957514 MS.gene98466:CDS
ATACATGATGCAACTGTAAA+TGG 0.242921 5.4:-18954197 MS.gene98466:CDS
TTAGAACGCGCACCAATTTC+AGG 0.251761 5.4:+18957642 None:intergenic
AACTTACCCAACTGCTTTAC+TGG 0.252236 5.4:+18954919 None:intergenic
CTTCGCTATATTCGTGTTTC+CGG 0.254247 5.4:+18956344 None:intergenic
AATATATTCCACATCCTCTA+TGG 0.260429 5.4:-18956505 MS.gene98466:CDS
GTGACCTCTATTCCTGAAAT+TGG 0.292763 5.4:-18957654 MS.gene98466:CDS
TGCACTTGGCAGGATATTTA+GGG 0.308043 5.4:-18954124 MS.gene98466:CDS
TTTCCAAGTGGTAGTGGATA+TGG 0.311953 5.4:-18955911 MS.gene98466:CDS
ACTTCGGTCCTTCTCTTCAT+TGG 0.319322 5.4:-18951708 MS.gene98466:CDS
AATTGTATCCATCAGGAATA+AGG 0.321064 5.4:-18954484 MS.gene98466:intron
CTTCACGTTGCGGTAGTTGC+TGG 0.322177 5.4:-18956471 MS.gene98466:CDS
CTAAGACTGAATATGAGATT+TGG 0.338368 5.4:-18957623 MS.gene98466:CDS
AGGGTAATCCTGACCTCTTA+TGG 0.352153 5.4:-18954292 MS.gene98466:CDS
CCAAAGACAACTACGAAAAC+TGG 0.369243 5.4:-18957725 MS.gene98466:CDS
CGAGGAAATTGTGAAGAAAT+TGG 0.372095 5.4:-18956445 MS.gene98466:CDS
ATGCAAACTCGTTTATTAAG+AGG 0.378242 5.4:-18956539 MS.gene98466:CDS
AACAGGGATTTCACCATCAT+TGG 0.379563 5.4:+18956263 None:intergenic
TGGTGAAAGCTGGGGAGAAA+TGG 0.379583 5.4:-18951911 MS.gene98466:CDS
TGTTCTTCTTGCTGCTGCTA+AGG 0.379583 5.4:-18956244 MS.gene98466:CDS
TCACATGTCATTTCAGAATT+CGG 0.380455 5.4:-18954650 MS.gene98466:CDS
GATAAGTAATAAGTTTCAAT+TGG 0.388393 5.4:+18951432 None:intergenic
AGTTGCACCCAATTTATTCC+AGG 0.399506 5.4:+18957506 None:intergenic
CACAAGGAGCTGGTGAAAGC+TGG 0.403742 5.4:-18951921 MS.gene98466:CDS
GCTGCAGCTTTCACTGTCCC+TGG 0.408383 5.4:-18951828 MS.gene98466:CDS
TTAGCAGCAGCAAGAAGAAC+AGG 0.410668 5.4:+18956246 None:intergenic
TAGAAACCACAGAGAAGAAA+AGG 0.416389 5.4:+18951610 None:intergenic
TTCCAAGTGGTAGTGGATAT+GGG 0.416844 5.4:-18955910 MS.gene98466:CDS
AAATGCCGTGTAGACGCATT+TGG 0.419337 5.4:-18954158 MS.gene98466:CDS
AATTCCATGTTGCACTTGGC+AGG 0.419647 5.4:-18954134 MS.gene98466:CDS
ATCAGAACTTAGAGAGGCTT+CGG 0.421195 5.4:-18954378 MS.gene98466:CDS
GGGTAATCCTGACCTCTTAT+GGG 0.423361 5.4:-18954291 MS.gene98466:CDS
CTAATATGAGTAAGATTCTC+TGG 0.424630 5.4:+18957552 None:intergenic
TCACTTGCTATGCTCTTAAA+GGG 0.427681 5.4:-18951567 MS.gene98466:CDS
CATTGGTCTTCATAGATAAC+AGG 0.427879 5.4:+18956280 None:intergenic
ACCTTAGTGGCAATGACTTA+AGG 0.429666 5.4:+18951652 None:intergenic
AGATGCAAAGAGAAATTCTA+TGG 0.430747 5.4:-18954061 MS.gene98466:CDS
TTCACGTTGCGGTAGTTGCT+GGG 0.432176 5.4:-18956470 MS.gene98466:CDS
TCTCTTTGCATCTGCATAGC+AGG 0.438079 5.4:+18954071 None:intergenic
GAGATTTGGAACAGGAAGAA+TGG 0.441267 5.4:-18957609 MS.gene98466:CDS
CCACAAATCACACTTTGAAT+CGG 0.443086 5.4:-18955978 MS.gene98466:CDS
TCTGTGTTTCCAAGTGGTAG+TGG 0.443413 5.4:-18955917 MS.gene98466:CDS
CTGAATATGAGATTTGGAAC+AGG 0.444534 5.4:-18957617 MS.gene98466:CDS
GTTCTTCTTGCTGCTGCTAA+GGG 0.445513 5.4:-18956243 MS.gene98466:CDS
TCGGTACTATTAAAGTTCTC+TGG 0.448532 5.4:-18954631 MS.gene98466:intron
GACGGAACTAGAACGATAAC+AGG 0.453839 5.4:+18951501 None:intergenic
CGATTCAAAGTGTGATTTGT+GGG 0.456154 5.4:+18955979 None:intergenic
TATAGCGAAGTGTATGACTA+TGG 0.458675 5.4:-18956331 MS.gene98466:CDS
TCCTTAAGTCATTGCCACTA+AGG 0.460081 5.4:-18951653 MS.gene98466:CDS
TCTTGTGGGACATGGTCTGT+GGG 0.464135 5.4:-18957682 MS.gene98466:CDS
TCAATGGCCCATAAGAGGTC+AGG 0.465739 5.4:+18954284 None:intergenic
TTTCAGCGTAACGAGCCGTT+AGG 0.467061 5.4:+18951682 None:intergenic
GTTTATAGATGCAATGAGAA+AGG 0.467103 5.4:-18954312 MS.gene98466:CDS
TTGTGGGCAAGAGGCATTTG+AGG 0.467341 5.4:+18955995 None:intergenic
CTTGTTAGAAACTATCTTGT+GGG 0.467922 5.4:-18957696 MS.gene98466:CDS
ATGCGTGCCAATGCGTATAA+TGG 0.471182 5.4:+18955944 None:intergenic
TGTGCAGCGATTTATATTGA+AGG 0.474499 5.4:+18956589 None:intergenic
TTCATATTGCTAAAGAAGCC+TGG 0.477292 5.4:-18957524 MS.gene98466:CDS
AAAGAAGCCTGGAATAAATT+GGG 0.481257 5.4:-18957513 MS.gene98466:CDS
ACAAGGAGCTGGTGAAAGCT+GGG 0.481894 5.4:-18951920 MS.gene98466:CDS
GGTGAAAGCTGGGGAGAAAT+GGG 0.482292 5.4:-18951910 MS.gene98466:CDS
AGCTGGTTCATTTACTCTTG+TGG 0.482801 5.4:-18951877 MS.gene98466:CDS
AGATTTGGAACAGGAAGAAT+GGG 0.485550 5.4:-18957608 MS.gene98466:CDS
TCAGCTCAGCAACAAGAGCT+AGG 0.486371 5.4:+18956367 None:intergenic
CATAGCAAGTGAAGCACAGA+AGG 0.486804 5.4:+18951578 None:intergenic
ATCTTGTGGGACATGGTCTG+TGG 0.486835 5.4:-18957683 MS.gene98466:CDS
GTGAAGAAATTGGTGAAGGA+AGG 0.488215 5.4:-18956435 MS.gene98466:CDS
AATTGTGCACCCCAAGTGTA+AGG 0.491201 5.4:-18951994 MS.gene98466:CDS
TTGCATCTGCATAGCAGGAC+CGG 0.495069 5.4:+18954076 None:intergenic
ATATATTCCACATCCTCTAT+GGG 0.496055 5.4:-18956504 MS.gene98466:CDS
TTGTCTTGATTGTTTCCACC+AGG 0.496117 5.4:+18951810 None:intergenic
TTGTACACCGTTGGAAGACC+TGG 0.502955 5.4:-18956190 MS.gene98466:CDS
TTTATAGATGCAATGAGAAA+GGG 0.503030 5.4:-18954311 MS.gene98466:CDS
ATCATGTATGAGTTCGAAAA+CGG 0.503307 5.4:+18954211 None:intergenic
TGCGATAATTATCATCGGCC+AGG 0.509460 5.4:+18956172 None:intergenic
TGGCAATTCCATGTTGCACT+TGG 0.511014 5.4:-18954138 MS.gene98466:CDS
CAGCTTTCACCAGCTCCTTG+TGG 0.512750 5.4:+18951922 None:intergenic
TTGTGAAGCAGTAGAATGAC+AGG 0.514230 5.4:-18957789 None:intergenic
TCTTTACCGTTGTACACCGT+TGG 0.515694 5.4:-18956199 MS.gene98466:CDS
TCTGATCTTGATCGTAGATC+CGG 0.515841 5.4:-18954095 MS.gene98466:CDS
CGCACCAATTTCAGGAATAG+AGG 0.521001 5.4:+18957650 None:intergenic
CTTTAGGAAGGTTATGTGGA+CGG 0.525505 5.4:-18954957 MS.gene98466:intron
GCTCTTGTTGCTGAGCTGAC+CGG 0.526277 5.4:-18956363 MS.gene98466:CDS
CCGATTCAAAGTGTGATTTG+TGG 0.526820 5.4:+18955978 None:intergenic
TGCAAACTCGTTTATTAAGA+GGG 0.527286 5.4:-18956538 MS.gene98466:CDS
TCTTGCAAATATTGCCAAAG+AGG 0.534735 5.4:-18955123 MS.gene98466:CDS
TGTGATGTCGTGCAAGAACA+AGG 0.535047 5.4:+18951779 None:intergenic
GAGGCATTTGAGGAAATCGT+TGG 0.537554 5.4:+18956005 None:intergenic
TACAGAAAGCCACAAGGAGC+TGG 0.538877 5.4:-18951931 MS.gene98466:CDS
GGTCCTCCCCATAGAGGATG+TGG 0.539677 5.4:+18956497 None:intergenic
AAGAGAAATTCTATGGTTCA+AGG 0.541072 5.4:-18954054 MS.gene98466:intron
TCGTAGTTGTCTTTGGTCAG+TGG 0.542773 5.4:+18957732 None:intergenic
TGTGCAACCATTATACGCAT+TGG 0.543058 5.4:-18955951 MS.gene98466:CDS
AGTGCGAAAAGTAACCTTAG+TGG 0.548121 5.4:+18951639 None:intergenic
ATGTTGCAAGCAGCAAAGCA+TGG 0.548691 5.4:-18954344 MS.gene98466:CDS
CAACACAAAGCTTCTTTCGT+AGG 0.550008 5.4:-18955095 MS.gene98466:intron
TTATCGCCAGTAAAGCAGTT+GGG 0.556264 5.4:-18954925 MS.gene98466:intron
AACCCATATCCACTACCACT+TGG 0.557493 5.4:+18955908 None:intergenic
AAGTGTGATTTGTGGGCAAG+AGG 0.558162 5.4:+18955986 None:intergenic
TCTTGTTAGAAACTATCTTG+TGG 0.559427 5.4:-18957697 MS.gene98466:CDS
AGAAACTATCTTGTGGGACA+TGG 0.562860 5.4:-18957690 MS.gene98466:CDS
AGAAACCACAGAGAAGAAAA+GGG 0.563826 5.4:+18951611 None:intergenic
ACCTTGCTCAATATCTGGAT+CGG 0.564323 5.4:+18957464 None:intergenic
TGTTGCAAGCAGCAAAGCAT+GGG 0.564523 5.4:-18954343 MS.gene98466:CDS
GCTTTAATTTGCAGGTGTGG+TGG 0.564757 5.4:-18956622 MS.gene98466:intron
ACTTGAAAATCTCAAGGAAG+AGG 0.567742 5.4:+18951469 None:intergenic
TAAGGAATCAGAACTTAGAG+AGG 0.568613 5.4:-18954384 MS.gene98466:CDS
GTTTCTTTAGGAAGGTTATG+TGG 0.570625 5.4:-18954961 MS.gene98466:intron
GCCGATGATAATTATCGCAA+TGG 0.574637 5.4:-18956168 MS.gene98466:CDS
TGAAGAAATTGGTGAAGGAA+GGG 0.574748 5.4:-18956434 MS.gene98466:CDS
TTTATCGCCAGTAAAGCAGT+TGG 0.576962 5.4:-18954926 MS.gene98466:CDS
CAGCTCAGCAACAAGAGCTA+GGG 0.580236 5.4:+18956368 None:intergenic
AAATGGGCAAAAGATACAGC+TGG 0.580445 5.4:-18951894 MS.gene98466:CDS
TTATCTATGAAGACCAATGA+TGG 0.582929 5.4:-18956276 MS.gene98466:CDS
TAAGAAAATATCACGGTCAG+AGG 0.584733 5.4:-18956304 MS.gene98466:CDS
TGCGGTAGTTGCTGGGCACG+AGG 0.589759 5.4:-18956463 MS.gene98466:CDS
TCTCTTCATTGGAATCCTAA+CGG 0.591072 5.4:-18951697 MS.gene98466:CDS
CTGTAGACTTGAAAATCTCA+AGG 0.594097 5.4:+18951463 None:intergenic
GCAGCTTTCACTGTCCCTGG+TGG 0.601445 5.4:-18951825 MS.gene98466:CDS
GGAACAAGCATTGCAGCGAG+TGG 0.605832 5.4:-18957768 MS.gene98466:CDS
AGGAAGAGGCGCAATTGTGA+CGG 0.607133 5.4:+18951483 None:intergenic
AGTATATTGAGAGCGGTGAG+TGG 0.609550 5.4:-18956566 MS.gene98466:CDS
ACCATTGCGATAATTATCAT+CGG 0.609954 5.4:+18956167 None:intergenic
TAGAACGATAACAGGAACAC+TGG 0.611619 5.4:+18951509 None:intergenic
AACTACCGCAACGTGAAGAA+CGG 0.612033 5.4:+18956476 None:intergenic
AATTGCCAAATGCGTCTACA+CGG 0.612652 5.4:+18954153 None:intergenic
TTAGGATTCCAATGAAGAGA+AGG 0.614556 5.4:+18951700 None:intergenic
ATGCCTTCTGTGTTTCCAAG+TGG 0.615562 5.4:-18955923 MS.gene98466:CDS
TGCAACTGTAAATGGACGGA+AGG 0.618113 5.4:-18954189 MS.gene98466:CDS
CTTGTGGGACATGGTCTGTG+GGG 0.619674 5.4:-18957681 MS.gene98466:CDS
CTACCACTTGGAAACACAGA+AGG 0.622603 5.4:+18955920 None:intergenic
AAGAACGGTCCTCCCCATAG+AGG 0.622685 5.4:+18956491 None:intergenic
GCCGATCCAGATATTGAGCA+AGG 0.624425 5.4:-18957465 MS.gene98466:intron
AATTGTGAAGAAATTGGTGA+AGG 0.625256 5.4:-18956439 MS.gene98466:CDS
CTTTCTGTAAATAGCTCACG+AGG 0.625312 5.4:+18951945 None:intergenic
ATATCCTGCCAAGTGCAACA+TGG 0.627952 5.4:+18954130 None:intergenic
GGTGGAAACAATCAAGACAA+TGG 0.629811 5.4:-18951807 MS.gene98466:CDS
ATGATGCAACTGTAAATGGA+CGG 0.638038 5.4:-18954193 MS.gene98466:CDS
CATATCATTCAACTAACATG+TGG 0.643061 5.4:-18957576 MS.gene98466:CDS
CAAGGAGCTGGTGAAAGCTG+GGG 0.651622 5.4:-18951919 MS.gene98466:CDS
TGTCTTGATTGTTTCCACCA+GGG 0.652150 5.4:+18951811 None:intergenic
GAGGACCGTTCTTCACGTTG+CGG 0.655029 5.4:-18956481 MS.gene98466:CDS
GTGATGTCGTGCAAGAACAA+GGG 0.659099 5.4:+18951780 None:intergenic
ATTCCACATCCTCTATGGGG+AGG 0.660094 5.4:-18956500 MS.gene98466:CDS
TAGCAGCAGCAAGAAGAACA+GGG 0.665135 5.4:+18956247 None:intergenic
TTGGAACAGGAAGAATGGGA+AGG 0.668429 5.4:-18957604 MS.gene98466:CDS
TATTTCAAGAGCTACACGGT+AGG 0.669157 5.4:+18954439 None:intergenic
GTGAAAATGAAAGACAATCG+AGG 0.669964 5.4:-18956399 MS.gene98466:CDS
TCATCGGCCAGGTCTTCCAA+CGG 0.671668 5.4:+18956183 None:intergenic
TGGTATATAAGAAAATATCA+CGG 0.677081 5.4:-18956311 MS.gene98466:CDS
CTACGATCAAGATCAGAGGA+AGG 0.678354 5.4:+18954101 None:intergenic
CTGCACAAGTATATTGAGAG+CGG 0.680709 5.4:-18956573 MS.gene98466:CDS
GGATCTACGATCAAGATCAG+AGG 0.680818 5.4:+18954097 None:intergenic
TCAATATTTCAAGAGCTACA+CGG 0.684421 5.4:+18954435 None:intergenic
GCTATTTACAGAAAGCCACA+AGG 0.686658 5.4:-18951937 MS.gene98466:CDS
GGTCTTCCAACGGTGTACAA+CGG 0.687225 5.4:+18956193 None:intergenic
TATATTCCACATCCTCTATG+GGG 0.688060 5.4:-18956503 MS.gene98466:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTTATAAAAGAAATTTAA+AGG - chr5.4:18953510-18953529 MS.gene98466:intron 10.0%
!! CTTAAATACTTATAATATTA+GGG - chr5.4:18952459-18952478 MS.gene98466:intron 10.0%
!! TCTTAAATACTTATAATATT+AGG - chr5.4:18952458-18952477 MS.gene98466:intron 10.0%
!!! GATATTATTTTTAGATATTT+TGG + chr5.4:18956135-18956154 None:intergenic 10.0%
!!! TATTATTTTTAGATATTTTG+GGG + chr5.4:18956133-18956152 None:intergenic 10.0%
!! AAACTCCTTTAATATATTAT+TGG + chr5.4:18953651-18953670 None:intergenic 15.0%
!! AAATATCATTCTAAGTAAAA+AGG - chr5.4:18955301-18955320 MS.gene98466:intron 15.0%
!! AATATCATTCTAAGTAAAAA+GGG - chr5.4:18955302-18955321 MS.gene98466:intron 15.0%
!! ATATATATTAGTAGTTCAAT+AGG + chr5.4:18956099-18956118 None:intergenic 15.0%
!! ATTTAAAGGTGATTTATAAA+AGG - chr5.4:18953524-18953543 MS.gene98466:intron 15.0%
!! TAATTAATTAATCACAAAGA+GGG + chr5.4:18954643-18954662 None:intergenic 15.0%
!! TACTTCCAATAATATATTAA+AGG - chr5.4:18953643-18953662 MS.gene98466:intron 15.0%
!! TATATATTAGTAGTTCAATA+GGG + chr5.4:18956098-18956117 None:intergenic 15.0%
!! TTAATTAATTAATCACAAAG+AGG + chr5.4:18954644-18954663 None:intergenic 15.0%
!! TTATTAAACAGTAAAAGTTT+AGG - chr5.4:18952302-18952321 MS.gene98466:intron 15.0%
!! TTTAAAGGTGATTTATAAAA+GGG - chr5.4:18953525-18953544 MS.gene98466:intron 15.0%
!!! AAAAACTAAATTTGAAATTC+TGG - chr5.4:18956950-18956969 MS.gene98466:intron 15.0%
!!! ATTCAAATGTACTTATTTTT+GGG + chr5.4:18952395-18952414 None:intergenic 15.0%
!!! CAAAAGTTTGTATTTTATAA+AGG + chr5.4:18953567-18953586 None:intergenic 15.0%
!!! TATTCAAATGTACTTATTTT+TGG + chr5.4:18952396-18952415 None:intergenic 15.0%
!! AAACTATGTCTAATATGTAT+AGG + chr5.4:18951787-18951806 None:intergenic 20.0%
!! AACTATGTCTAATATGTATA+GGG + chr5.4:18951786-18951805 None:intergenic 20.0%
!! AAGCGATATAATTAATTCTA+AGG - chr5.4:18955514-18955533 MS.gene98466:intron 20.0%
!! AATATCTTAGAGAGAAAATA+GGG + chr5.4:18956011-18956030 None:intergenic 20.0%
!! AATTAATTAATCACAAAGAG+GGG + chr5.4:18954642-18954661 None:intergenic 20.0%
!! AGTAAAAGATGAGATTAATA+AGG - chr5.4:18955369-18955388 MS.gene98466:intron 20.0%
!! ATACATGACATTTAAATAAG+TGG - chr5.4:18957013-18957032 MS.gene98466:intron 20.0%
!! ATGAATAAGATAATAATGTG+TGG + chr5.4:18957071-18957090 None:intergenic 20.0%
!! CAATTAGTAAGGAAAATAAA+TGG - chr5.4:18952484-18952503 MS.gene98466:intron 20.0%
!! GATAAGTAATAAGTTTCAAT+TGG + chr5.4:18957737-18957756 None:intergenic 20.0%
!! TAATATCTTAGAGAGAAAAT+AGG + chr5.4:18956012-18956031 None:intergenic 20.0%
!! TACACATTAATCTATTCTTT+GGG - chr5.4:18951744-18951763 MS.gene98466:CDS 20.0%
!! TAGAATTAATTATATCGCTT+TGG + chr5.4:18955514-18955533 None:intergenic 20.0%
!! TGGTATATAAGAAAATATCA+CGG - chr5.4:18952855-18952874 MS.gene98466:intron 20.0%
!!! AATTCATATGTTTGATTTCA+TGG - chr5.4:18951973-18951992 MS.gene98466:CDS 20.0%
!!! ACACTTTATTTATTATGAAG+TGG + chr5.4:18952044-18952063 None:intergenic 20.0%
!!! ATTCATATGTTTGATTTCAT+GGG - chr5.4:18951974-18951993 MS.gene98466:CDS 20.0%
!!! CATTTATTTTCCTTACTAAT+TGG + chr5.4:18952486-18952505 None:intergenic 20.0%
!!! TCAAATTTAGTTTTTGAAGT+TGG + chr5.4:18956945-18956964 None:intergenic 20.0%
!!! TTGAATATTGTGATTTTAGT+GGG - chr5.4:18952409-18952428 MS.gene98466:intron 20.0%
!!! TTGTTAATCCTTGTTTAAAT+CGG - chr5.4:18954565-18954584 MS.gene98466:intron 20.0%
!!! TTTGAATATTGTGATTTTAG+TGG - chr5.4:18952408-18952427 MS.gene98466:intron 20.0%
!!! TTTTACGCATATTTTTTTTC+AGG - chr5.4:18954475-18954494 MS.gene98466:intron 20.0%
! AAGCATTTAACTCTTGATTA+TGG - chr5.4:18955630-18955649 MS.gene98466:intron 25.0%
! AATCAAGAGTTAAATGCTTT+CGG + chr5.4:18955629-18955648 None:intergenic 25.0%
! AATGAATACTATATGTGTAG+TGG + chr5.4:18953613-18953632 None:intergenic 25.0%
! AATGTCATGTATCTCAAAAT+TGG + chr5.4:18957005-18957024 None:intergenic 25.0%
! AATTTGAAAAGTAAGCGAAA+TGG + chr5.4:18953341-18953360 None:intergenic 25.0%
! AGCTAATGTTTATTAGCAAT+AGG - chr5.4:18952224-18952243 MS.gene98466:intron 25.0%
! ATCTTACATAAATAGCAAGT+GGG - chr5.4:18956200-18956219 MS.gene98466:CDS 25.0%
! ATGAACACACATATATAACA+GGG + chr5.4:18954443-18954462 None:intergenic 25.0%
! ATGTTTATTAGCAATAGGTA+AGG - chr5.4:18952229-18952248 MS.gene98466:intron 25.0%
! GAATGATTGTACTTACAATA+AGG + chr5.4:18954617-18954636 None:intergenic 25.0%
! GAGATATATAAAGCGTAATA+AGG - chr5.4:18956631-18956650 MS.gene98466:intron 25.0%
! GAGTAAATAATGAATGAGAT+TGG - chr5.4:18953875-18953894 MS.gene98466:intron 25.0%
! GCCATTGATAAAAATAAAAG+AGG - chr5.4:18954897-18954916 MS.gene98466:intron 25.0%
! GTACACATTAATCTATTCTT+TGG - chr5.4:18951743-18951762 MS.gene98466:CDS 25.0%
! TAGTTTCTAAATGTAGTGAA+AGG - chr5.4:18951801-18951820 MS.gene98466:CDS 25.0%
! TATCTTACATAAATAGCAAG+TGG - chr5.4:18956199-18956218 MS.gene98466:CDS 25.0%
! TATGAACACACATATATAAC+AGG + chr5.4:18954444-18954463 None:intergenic 25.0%
! TCGATTCAATATTGTATCTT+AGG - chr5.4:18953120-18953139 MS.gene98466:intron 25.0%
! TGCAAACTTATAATGTTACA+CGG - chr5.4:18953400-18953419 MS.gene98466:intron 25.0%
! TGTTTATTAGCAATAGGTAA+GGG - chr5.4:18952230-18952249 MS.gene98466:intron 25.0%
! TTATAAAGCTAGAATTCGTA+TGG + chr5.4:18955452-18955471 None:intergenic 25.0%
! TTTATAGATGCAATGAGAAA+GGG - chr5.4:18954855-18954874 MS.gene98466:intron 25.0%
!! AATAAGGATTGAAACTTGTT+AGG - chr5.4:18955385-18955404 MS.gene98466:intron 25.0%
!! CAATGAGGAAAGATTTTTAA+AGG - chr5.4:18952197-18952216 MS.gene98466:intron 25.0%
!! CATATTGTGAAATTTTGTGA+AGG - chr5.4:18957139-18957158 MS.gene98466:intron 25.0%
!! TATATTTTCCTTATTCCTGA+TGG + chr5.4:18954693-18954712 None:intergenic 25.0%
!! TTGTATTTTATAAAGGACAC+TGG + chr5.4:18953560-18953579 None:intergenic 25.0%
!!! AGGCTAAACTTCTATTTTAA+AGG - chr5.4:18956234-18956253 MS.gene98466:CDS 25.0%
!!! ATTTCGCTTACTTTTCAAAT+TGG - chr5.4:18953340-18953359 MS.gene98466:intron 25.0%
!!! CTAATATACCGATTTAAACA+AGG + chr5.4:18954576-18954595 None:intergenic 25.0%
!!! GCCTCTTTTATTTTTATCAA+TGG + chr5.4:18954901-18954920 None:intergenic 25.0%
!!! GGCTAAACTTCTATTTTAAA+GGG - chr5.4:18956235-18956254 MS.gene98466:CDS 25.0%
!!! TTGCACTTTTTCATGATTTT+TGG - chr5.4:18956561-18956580 MS.gene98466:CDS 25.0%
!!! TTTCGCTTACTTTTCAAATT+GGG - chr5.4:18953341-18953360 MS.gene98466:intron 25.0%
AAAGAAGCCTGGAATAAATT+GGG - chr5.4:18951653-18951672 MS.gene98466:CDS 30.0%
AAGAGAAATTCTATGGTTCA+AGG - chr5.4:18955112-18955131 MS.gene98466:CDS 30.0%
AATATATTCCACATCCTCTA+TGG - chr5.4:18952661-18952680 MS.gene98466:intron 30.0%
AATTGTATCCATCAGGAATA+AGG - chr5.4:18954682-18954701 MS.gene98466:intron 30.0%
AATTGTGAAGAAATTGGTGA+AGG - chr5.4:18952727-18952746 MS.gene98466:intron 30.0%
ACCATTGCGATAATTATCAT+CGG + chr5.4:18953002-18953021 None:intergenic 30.0%
AGACCAACTTTACAAAATTG+AGG - chr5.4:18953807-18953826 MS.gene98466:intron 30.0%
AGATGCAAAGAGAAATTCTA+TGG - chr5.4:18955105-18955124 MS.gene98466:CDS 30.0%
ATAAATAAAGTGTGTGAGTG+AGG - chr5.4:18952051-18952070 MS.gene98466:intron 30.0%
ATACATGATGCAACTGTAAA+TGG - chr5.4:18954969-18954988 MS.gene98466:intron 30.0%
ATATATTCCACATCCTCTAT+GGG - chr5.4:18952662-18952681 MS.gene98466:intron 30.0%
ATATTAGGGTCCAATTAGTA+AGG - chr5.4:18952473-18952492 MS.gene98466:intron 30.0%
ATCATGTATGAGTTCGAAAA+CGG + chr5.4:18954958-18954977 None:intergenic 30.0%
ATCGACATCAAACACTAATA+TGG + chr5.4:18953105-18953124 None:intergenic 30.0%
ATGCAAACTCGTTTATTAAG+AGG - chr5.4:18952627-18952646 MS.gene98466:intron 30.0%
CAATGAGATTCAAGATGATT+TGG + chr5.4:18955742-18955761 None:intergenic 30.0%
CATATCATTCAACTAACATG+TGG - chr5.4:18951590-18951609 MS.gene98466:CDS 30.0%
CCAAAGAATTCAAGAGTTTA+AGG - chr5.4:18954764-18954783 MS.gene98466:intron 30.0%
CCTTAAACTCTTGAATTCTT+TGG + chr5.4:18954767-18954786 None:intergenic 30.0%
CTAAGACTGAATATGAGATT+TGG - chr5.4:18951543-18951562 MS.gene98466:CDS 30.0%
CTAATATGAGTAAGATTCTC+TGG + chr5.4:18951617-18951636 None:intergenic 30.0%
CTAGAGTAGCAATATATCTT+AGG + chr5.4:18955697-18955716 None:intergenic 30.0%
CTGAGGATTATTAATCTTCT+CGG - chr5.4:18954180-18954199 MS.gene98466:CDS 30.0%
CTTGTTAGAAACTATCTTGT+GGG - chr5.4:18951470-18951489 MS.gene98466:CDS 30.0%
GGAGATGTTAAATTAAGTGT+TGG + chr5.4:18953592-18953611 None:intergenic 30.0%
GGTAATCTCAAAACTAAAAG+CGG + chr5.4:18953984-18954003 None:intergenic 30.0%
GTTGTATGAGATGTTACAAA+TGG - chr5.4:18952132-18952151 MS.gene98466:intron 30.0%
GTTTATAGATGCAATGAGAA+AGG - chr5.4:18954854-18954873 MS.gene98466:intron 30.0%
TAAAGAAGCCTGGAATAAAT+TGG - chr5.4:18951652-18951671 MS.gene98466:CDS 30.0%
TACATGATCTGTTTGGAAAT+TGG - chr5.4:18953691-18953710 MS.gene98466:intron 30.0%
TAGTTACAACGCTTAAGATT+GGG + chr5.4:18952330-18952349 None:intergenic 30.0%
TCAATATTGTATCTTAGGTG+TGG - chr5.4:18953125-18953144 MS.gene98466:intron 30.0%
TCAATATTTCAAGAGCTACA+CGG + chr5.4:18954734-18954753 None:intergenic 30.0%
TCTTGTTAGAAACTATCTTG+TGG - chr5.4:18951469-18951488 MS.gene98466:CDS 30.0%
TGCAAACTCGTTTATTAAGA+GGG - chr5.4:18952628-18952647 MS.gene98466:intron 30.0%
TGTATCACTGCAGAAATATT+TGG - chr5.4:18953040-18953059 MS.gene98466:intron 30.0%
TTAGTTACAACGCTTAAGAT+TGG + chr5.4:18952331-18952350 None:intergenic 30.0%
TTATCTATGAAGACCAATGA+TGG - chr5.4:18952890-18952909 MS.gene98466:intron 30.0%
TTGGGTCATCTTAAAATTCT+CGG - chr5.4:18953359-18953378 MS.gene98466:intron 30.0%
TTGTAACTAAGAACAACCAA+CGG - chr5.4:18952341-18952360 MS.gene98466:intron 30.0%
TTGTTATCGTTTAAGGGATT+TGG + chr5.4:18955560-18955579 None:intergenic 30.0%
TTTCACAATATGTTATAGCG+CGG + chr5.4:18957131-18957150 None:intergenic 30.0%
! ACTCCTCAATTTTGTAAAGT+TGG + chr5.4:18953813-18953832 None:intergenic 30.0%
! AGAGTTTTACATGATCTGTT+TGG - chr5.4:18953684-18953703 MS.gene98466:intron 30.0%
! AGTGAAGTTTGATGAGTTTT+TGG + chr5.4:18953764-18953783 None:intergenic 30.0%
! ATATGAAGTGAGAGTGATTT+TGG + chr5.4:18955982-18956001 None:intergenic 30.0%
! ATCGACTTTGTTATCGTTTA+AGG + chr5.4:18955567-18955586 None:intergenic 30.0%
! GGCATTTAACACTTATTTCT+CGG - chr5.4:18956652-18956671 MS.gene98466:intron 30.0%
! GTTTTTCTACAATATGCGAA+TGG - chr5.4:18954152-18954171 MS.gene98466:CDS 30.0%
! TCACATGTCATTTCAGAATT+CGG - chr5.4:18954516-18954535 MS.gene98466:intron 30.0%
! TCGACTTTGTTATCGTTTAA+GGG + chr5.4:18955566-18955585 None:intergenic 30.0%
! TCTTTTCACTTCTTCAACTT+CGG - chr5.4:18957442-18957461 MS.gene98466:intron 30.0%
! TGAGATGTTACAAATGGTTT+TGG - chr5.4:18952138-18952157 MS.gene98466:intron 30.0%
! TTATTCCTGATGGATACAAT+TGG + chr5.4:18954683-18954702 None:intergenic 30.0%
!! AAGCTCTAGAAAGAAGAATT+AGG + chr5.4:18954113-18954132 None:intergenic 30.0%
!! ACATACATGCTTTAATTTGC+AGG - chr5.4:18952536-18952555 MS.gene98466:intron 30.0%
!! AGAGAAGTGCATGAATTTTA+CGG - chr5.4:18954008-18954027 MS.gene98466:intron 30.0%
!! GAGTATCGTTCCAATTTTAT+CGG - chr5.4:18953829-18953848 MS.gene98466:intron 30.0%
!! TGAGGAAAGATTTTTAAAGG+AGG - chr5.4:18952200-18952219 MS.gene98466:intron 30.0%
!!! ATTTTTTGCTTCCTTACACT+TGG + chr5.4:18957186-18957205 None:intergenic 30.0%
!!! CTTTTTTGACACTTATCAAG+AGG - chr5.4:18956740-18956759 MS.gene98466:intron 30.0%
!!! TTTGTGTTGTTTTTCCTCTT+TGG + chr5.4:18954060-18954079 None:intergenic 30.0%
!!! TTTTTTGCTTCCTTACACTT+GGG + chr5.4:18957185-18957204 None:intergenic 30.0%
AAAGATCACAGATCACAACA+AGG + chr5.4:18954346-18954365 None:intergenic 35.0%
AAGATCACAGATCACAACAA+GGG + chr5.4:18954345-18954364 None:intergenic 35.0%
AAGTGCAAATTAGCAAAAGC+TGG + chr5.4:18956549-18956568 None:intergenic 35.0%
AATTCATGCACTTCTCTTTC+AGG + chr5.4:18954005-18954024 None:intergenic 35.0%
ACTTGAAAATCTCAAGGAAG+AGG + chr5.4:18957700-18957719 None:intergenic 35.0%
AGAAACCACAGAGAAGAAAA+GGG + chr5.4:18957558-18957577 None:intergenic 35.0%
AGTTACAACGCTTAAGATTG+GGG + chr5.4:18952329-18952348 None:intergenic 35.0%
ATGATGCAACTGTAAATGGA+CGG - chr5.4:18954973-18954992 MS.gene98466:intron 35.0%
ATGCTTTCGGATACTTAATC+AGG + chr5.4:18955616-18955635 None:intergenic 35.0%
ATTAAGTCCTGTCTCATAGT+CGG + chr5.4:18951869-18951888 None:intergenic 35.0%
CATATACCTTGCTCAATATC+TGG + chr5.4:18951710-18951729 None:intergenic 35.0%
CCACAAATCACACTTTGAAT+CGG - chr5.4:18953188-18953207 MS.gene98466:intron 35.0%
CGAGGAAATTGTGAAGAAAT+TGG - chr5.4:18952721-18952740 MS.gene98466:intron 35.0%
CTGTAGACTTGAAAATCTCA+AGG + chr5.4:18957706-18957725 None:intergenic 35.0%
CTTGTTCTGCAAGTAATTGA+CGG + chr5.4:18956683-18956702 None:intergenic 35.0%
GAGAAGAGATTAGAGAGTTT+AGG - chr5.4:18956801-18956820 MS.gene98466:intron 35.0%
GATGTCTCAACAAAGGAATA+AGG - chr5.4:18955947-18955966 MS.gene98466:CDS 35.0%
GCTTATATGTTGGAACAAAG+AGG - chr5.4:18955191-18955210 MS.gene98466:intron 35.0%
GTAGCTAAACACTCTTTGTT+GGG + chr5.4:18955869-18955888 None:intergenic 35.0%
GTATATTTCGCTATTAGCGT+AGG + chr5.4:18956275-18956294 None:intergenic 35.0%
GTGAAAATGAAAGACAATCG+AGG - chr5.4:18952767-18952786 MS.gene98466:intron 35.0%
GTTGGTTGTGAAGTTGTTAT+AGG + chr5.4:18956927-18956946 None:intergenic 35.0%
TAAGAAAATATCACGGTCAG+AGG - chr5.4:18952862-18952881 MS.gene98466:intron 35.0%
TAAGGAATCAGAACTTAGAG+AGG - chr5.4:18954782-18954801 MS.gene98466:intron 35.0%
TAATTAATCACAAAGAGGGG+AGG + chr5.4:18954639-18954658 None:intergenic 35.0%
TAGAAACCACAGAGAAGAAA+AGG + chr5.4:18957559-18957578 None:intergenic 35.0%
TATAGCGAAGTGTATGACTA+TGG - chr5.4:18952835-18952854 MS.gene98466:intron 35.0%
TATAGCGCGGTTAAAATTCT+TGG + chr5.4:18957118-18957137 None:intergenic 35.0%
TATATTCCACATCCTCTATG+GGG - chr5.4:18952663-18952682 MS.gene98466:intron 35.0%
TCGGTACTATTAAAGTTCTC+TGG - chr5.4:18954535-18954554 MS.gene98466:intron 35.0%
TCTCTTCATTGGAATCCTAA+CGG - chr5.4:18957469-18957488 MS.gene98466:CDS 35.0%
TCTTGCAAATATTGCCAAAG+AGG - chr5.4:18954043-18954062 MS.gene98466:intron 35.0%
TGAAGAAATTGGTGAAGGAA+GGG - chr5.4:18952732-18952751 MS.gene98466:intron 35.0%
TGTAGCTAAACACTCTTTGT+TGG + chr5.4:18955870-18955889 None:intergenic 35.0%
TGTGCAGCGATTTATATTGA+AGG + chr5.4:18952580-18952599 None:intergenic 35.0%
TGTTTAGCTACACATCATCA+TGG - chr5.4:18955878-18955897 MS.gene98466:intron 35.0%
TTAGGATTCCAATGAAGAGA+AGG + chr5.4:18957469-18957488 None:intergenic 35.0%
TTCATATTGCTAAAGAAGCC+TGG - chr5.4:18951642-18951661 MS.gene98466:CDS 35.0%
TTGAGACATCACAAGTGTAA+TGG + chr5.4:18955937-18955956 None:intergenic 35.0%
! AGATTTGGAACAGGAAGAAT+GGG - chr5.4:18951558-18951577 MS.gene98466:CDS 35.0%
! CGATTCAAAGTGTGATTTGT+GGG + chr5.4:18953190-18953209 None:intergenic 35.0%
! CTGAATATGAGATTTGGAAC+AGG - chr5.4:18951549-18951568 MS.gene98466:CDS 35.0%
! GTTTCTTTAGGAAGGTTATG+TGG - chr5.4:18954205-18954224 MS.gene98466:CDS 35.0%
! TAAGTGTCTTTTGTGAGTCA+TGG - chr5.4:18951837-18951856 MS.gene98466:CDS 35.0%
! TTTTATCAATGGCCCATAAG+AGG + chr5.4:18954890-18954909 None:intergenic 35.0%
! TTTTTGCTTCCTTACACTTG+GGG + chr5.4:18957184-18957203 None:intergenic 35.0%
!! AAAAGAATTGTGTTGACTCG+TGG - chr5.4:18952087-18952106 MS.gene98466:intron 35.0%
!! AAAGAATTGTGTTGACTCGT+GGG - chr5.4:18952088-18952107 MS.gene98466:intron 35.0%
!! ATCTTCTCGGTTGTTTCTTT+AGG - chr5.4:18954193-18954212 MS.gene98466:CDS 35.0%
!! CATTGGTCTTCATAGATAAC+AGG + chr5.4:18952889-18952908 None:intergenic 35.0%
!! GAGAAGTGCATGAATTTTAC+GGG - chr5.4:18954009-18954028 MS.gene98466:intron 35.0%
!! TCACTTGCTATGCTCTTAAA+GGG - chr5.4:18957599-18957618 MS.gene98466:CDS 35.0%
!! TTCACTTGCTATGCTCTTAA+AGG - chr5.4:18957598-18957617 MS.gene98466:CDS 35.0%
AAATGGGCAAAAGATACAGC+TGG - chr5.4:18957272-18957291 MS.gene98466:intron 40.0%
AACAGGGATTTCACCATCAT+TGG + chr5.4:18952906-18952925 None:intergenic 40.0%
AACTTACCCAACTGCTTTAC+TGG + chr5.4:18954250-18954269 None:intergenic 40.0%
AAGAACAACCAACGGCATTT+AGG - chr5.4:18952349-18952368 MS.gene98466:intron 40.0%
AATTGCCAAATGCGTCTACA+CGG + chr5.4:18955016-18955035 None:intergenic 40.0%
ACCTTAGTGGCAATGACTTA+AGG + chr5.4:18957517-18957536 None:intergenic 40.0%
ACCTTGCTCAATATCTGGAT+CGG + chr5.4:18951705-18951724 None:intergenic 40.0%
AGAAACTATCTTGTGGGACA+TGG - chr5.4:18951476-18951495 MS.gene98466:CDS 40.0%
AGTATTTGTATCGTCTCCAC+AGG - chr5.4:18955246-18955265 MS.gene98466:intron 40.0%
AGTGCGAAAAGTAACCTTAG+TGG + chr5.4:18957530-18957549 None:intergenic 40.0%
AGTTGCACCCAATTTATTCC+AGG + chr5.4:18951663-18951682 None:intergenic 40.0%
ATACTTAATCAGGCTGGACA+CGG + chr5.4:18955606-18955625 None:intergenic 40.0%
ATATACGCTATTAGCGTGGT+TGG - chr5.4:18956289-18956308 MS.gene98466:CDS 40.0%
ATCAGAACTTAGAGAGGCTT+CGG - chr5.4:18954788-18954807 MS.gene98466:intron 40.0%
CAAAGCTTCTTTCGTAGGTA+TGG - chr5.4:18954076-18954095 MS.gene98466:CDS 40.0%
CAACACAAAGCTTCTTTCGT+AGG - chr5.4:18954071-18954090 MS.gene98466:CDS 40.0%
CACACATATATAACAGGGAC+TGG + chr5.4:18954438-18954457 None:intergenic 40.0%
CACTTGTGATGTCTCAACAA+AGG - chr5.4:18955940-18955959 MS.gene98466:CDS 40.0%
CCAAAGACAACTACGAAAAC+TGG - chr5.4:18951441-18951460 MS.gene98466:CDS 40.0%
CCGATTCAAAGTGTGATTTG+TGG + chr5.4:18953191-18953210 None:intergenic 40.0%
CGAAATATACGCTATTAGCG+TGG - chr5.4:18956285-18956304 MS.gene98466:CDS 40.0%
CTGCACAAGTATATTGAGAG+CGG - chr5.4:18952593-18952612 MS.gene98466:intron 40.0%
CTTCGCTATATTCGTGTTTC+CGG + chr5.4:18952825-18952844 None:intergenic 40.0%
CTTTCTGTAAATAGCTCACG+AGG + chr5.4:18957224-18957243 None:intergenic 40.0%
GAGGATAATTCCTGCACAAA+AGG - chr5.4:18956601-18956620 MS.gene98466:CDS 40.0%
GCCGATGATAATTATCGCAA+TGG - chr5.4:18952998-18953017 MS.gene98466:intron 40.0%
GCTATTTACAGAAAGCCACA+AGG - chr5.4:18957229-18957248 MS.gene98466:intron 40.0%
GCTTTGTATTCACACCCTTA+GGG + chr5.4:18954416-18954435 None:intergenic 40.0%
GGTGGAAACAATCAAGACAA+TGG - chr5.4:18957359-18957378 MS.gene98466:intron 40.0%
GTATTTGTATCGTCTCCACA+GGG - chr5.4:18955247-18955266 MS.gene98466:intron 40.0%
GTGAAGAAATTGGTGAAGGA+AGG - chr5.4:18952731-18952750 MS.gene98466:intron 40.0%
GTGACCTCTATTCCTGAAAT+TGG - chr5.4:18951512-18951531 MS.gene98466:CDS 40.0%
TAGAACGATAACAGGAACAC+TGG + chr5.4:18957660-18957679 None:intergenic 40.0%
TAGGTAAGGGAGAAGCAATA+AGG - chr5.4:18952243-18952262 MS.gene98466:intron 40.0%
TATTTCAAGAGCTACACGGT+AGG + chr5.4:18954730-18954749 None:intergenic 40.0%
TCCACGCTATTAGCGAAATT+GGG + chr5.4:18956500-18956519 None:intergenic 40.0%
TCCTTAAGTCATTGCCACTA+AGG - chr5.4:18957513-18957532 MS.gene98466:CDS 40.0%
TCTGATCTTGATCGTAGATC+CGG - chr5.4:18955071-18955090 MS.gene98466:intron 40.0%
TCTGGATTACAAGACGTATC+CGG + chr5.4:18954393-18954412 None:intergenic 40.0%
TCTTGTAATCCAGACCCTAA+GGG - chr5.4:18954399-18954418 MS.gene98466:CDS 40.0%
TGCACTTGGCAGGATATTTA+GGG - chr5.4:18955042-18955061 MS.gene98466:intron 40.0%
TGTCTTGATTGTTTCCACCA+GGG + chr5.4:18957358-18957377 None:intergenic 40.0%
TGTGCAACCATTATACGCAT+TGG - chr5.4:18953215-18953234 MS.gene98466:intron 40.0%
TTACTCCTCAATTGTCCCTT+CGG + chr5.4:18953861-18953880 None:intergenic 40.0%
TTATCGCCAGTAAAGCAGTT+GGG - chr5.4:18954241-18954260 MS.gene98466:CDS 40.0%
TTCCACGCTATTAGCGAAAT+TGG + chr5.4:18956501-18956520 None:intergenic 40.0%
TTCTCGGTAGTGAAATAGCT+AGG - chr5.4:18953375-18953394 MS.gene98466:intron 40.0%
TTGCACTTGGCAGGATATTT+AGG - chr5.4:18955041-18955060 MS.gene98466:intron 40.0%
TTGTCTTGATTGTTTCCACC+AGG + chr5.4:18957359-18957378 None:intergenic 40.0%
TTTATCGCCAGTAAAGCAGT+TGG - chr5.4:18954240-18954259 MS.gene98466:CDS 40.0%
TTTCGGATACTTAATCAGGC+TGG + chr5.4:18955612-18955631 None:intergenic 40.0%
! AAATTTTGTGAAGGCAGTGG+AGG - chr5.4:18957148-18957167 MS.gene98466:intron 40.0%
! AGCTGGTTCATTTACTCTTG+TGG - chr5.4:18957289-18957308 MS.gene98466:intron 40.0%
! ATTAGTTTACGTGTGACGCT+TGG + chr5.4:18955426-18955445 None:intergenic 40.0%
! CCAGTTTTCGTAGTTGTCTT+TGG + chr5.4:18951444-18951463 None:intergenic 40.0%
! CTGCAGAAATATTTGGTTCG+TGG - chr5.4:18953047-18953066 MS.gene98466:intron 40.0%
! CTTTAGGAAGGTTATGTGGA+CGG - chr5.4:18954209-18954228 MS.gene98466:CDS 40.0%
! CTTTTCAATCCATCCTTGCA+AGG + chr5.4:18955907-18955926 None:intergenic 40.0%
! GAGATTTGGAACAGGAAGAA+TGG - chr5.4:18951557-18951576 MS.gene98466:CDS 40.0%
! GTGAAATTTTGTGAAGGCAG+TGG - chr5.4:18957145-18957164 MS.gene98466:intron 40.0%
! GTTCGAAAACGGCTTTTCTA+CGG + chr5.4:18954947-18954966 None:intergenic 40.0%
! TCCTGATGGATACAATTGGA+GGG + chr5.4:18954679-18954698 None:intergenic 40.0%
! TTATATCGCTTTGGACACGA+AGG + chr5.4:18955505-18955524 None:intergenic 40.0%
! TTCCTGATGGATACAATTGG+AGG + chr5.4:18954680-18954699 None:intergenic 40.0%
!! AAGAATTGTGTTGACTCGTG+GGG - chr5.4:18952089-18952108 MS.gene98466:intron 40.0%
!! AAGCGGAAGTAGATTAGTCT+TGG + chr5.4:18953967-18953986 None:intergenic 40.0%
!! CAAGGATGGATTGAAAAGGA+AGG - chr5.4:18955909-18955928 MS.gene98466:CDS 40.0%
!! CATGCTTTAATTTGCAGGTG+TGG - chr5.4:18952541-18952560 MS.gene98466:intron 40.0%
!! CTTGCAAGGATGGATTGAAA+AGG - chr5.4:18955905-18955924 MS.gene98466:CDS 40.0%
!! GTGAGAGTGATTTTGGAAGT+TGG + chr5.4:18955975-18955994 None:intergenic 40.0%
!! TCTCGGTTGTTTCTTTAGGA+AGG - chr5.4:18954197-18954216 MS.gene98466:CDS 40.0%
!! TTCCAAGTGGTAGTGGATAT+GGG - chr5.4:18953256-18953275 MS.gene98466:intron 40.0%
!! TTTCCAAGTGGTAGTGGATA+TGG - chr5.4:18953255-18953274 MS.gene98466:intron 40.0%
AAATGCCGTGTAGACGCATT+TGG - chr5.4:18955008-18955027 MS.gene98466:intron 45.0%
AACCAACGGCATTTAGGCTT+TGG - chr5.4:18952355-18952374 MS.gene98466:intron 45.0%
AACCCATATCCACTACCACT+TGG + chr5.4:18953261-18953280 None:intergenic 45.0%
AACTACCGCAACGTGAAGAA+CGG + chr5.4:18952693-18952712 None:intergenic 45.0%
AATTCCATGTTGCACTTGGC+AGG - chr5.4:18955032-18955051 MS.gene98466:intron 45.0%
AATTGTGCACCCCAAGTGTA+AGG - chr5.4:18957172-18957191 MS.gene98466:intron 45.0%
ACACTCTTTGTTGGGATGAG+AGG + chr5.4:18955861-18955880 None:intergenic 45.0%
ACCAACGGCATTTAGGCTTT+GGG - chr5.4:18952356-18952375 MS.gene98466:intron 45.0%
ACGCTAATAGCGTAGTCTTC+TGG - chr5.4:18956378-18956397 MS.gene98466:CDS 45.0%
ACTACGCTATTAGCGTACCA+AGG + chr5.4:18956374-18956393 None:intergenic 45.0%
ACTGCAATTGGCCAGAACTT+AGG + chr5.4:18956319-18956338 None:intergenic 45.0%
ACTTCGGTCCTTCTCTTCAT+TGG - chr5.4:18957458-18957477 MS.gene98466:intron 45.0%
AGGGTAATCCTGACCTCTTA+TGG - chr5.4:18954874-18954893 MS.gene98466:intron 45.0%
AGTATATTGAGAGCGGTGAG+TGG - chr5.4:18952600-18952619 MS.gene98466:intron 45.0%
ATATCCTGCCAAGTGCAACA+TGG + chr5.4:18955039-18955058 None:intergenic 45.0%
ATATGCGAATGGCGATTCTG+AGG - chr5.4:18954163-18954182 MS.gene98466:CDS 45.0%
ATCATCATGGAAGCCTTGCA+AGG - chr5.4:18955891-18955910 MS.gene98466:CDS 45.0%
ATGCCTTCTGTGTTTCCAAG+TGG - chr5.4:18953243-18953262 MS.gene98466:intron 45.0%
ATGCGTGCCAATGCGTATAA+TGG + chr5.4:18953225-18953244 None:intergenic 45.0%
ATGTTGCAAGCAGCAAAGCA+TGG - chr5.4:18954822-18954841 MS.gene98466:intron 45.0%
CATAGCAAGTGAAGCACAGA+AGG + chr5.4:18957591-18957610 None:intergenic 45.0%
CATGCGTGCAGCTTATATGT+TGG - chr5.4:18955181-18955200 MS.gene98466:intron 45.0%
CATGTATGTATGCGAGTGAG+AGG + chr5.4:18955165-18955184 None:intergenic 45.0%
CGCACCAATTTCAGGAATAG+AGG + chr5.4:18951519-18951538 None:intergenic 45.0%
CTACCACTTGGAAACACAGA+AGG + chr5.4:18953249-18953268 None:intergenic 45.0%
CTACGATCAAGATCAGAGGA+AGG + chr5.4:18955068-18955087 None:intergenic 45.0%
CTACGCTATTAGCGTACCAA+GGG + chr5.4:18956373-18956392 None:intergenic 45.0%
GAAGTTTAGCCTCACTCAAG+TGG + chr5.4:18956226-18956245 None:intergenic 45.0%
GACGGAACTAGAACGATAAC+AGG + chr5.4:18957668-18957687 None:intergenic 45.0%
GACTAAACCGACTATGAGAC+AGG - chr5.4:18951859-18951878 MS.gene98466:CDS 45.0%
GGATCTACGATCAAGATCAG+AGG + chr5.4:18955072-18955091 None:intergenic 45.0%
GGGTAATCCTGACCTCTTAT+GGG - chr5.4:18954875-18954894 MS.gene98466:intron 45.0%
GGTCTTTGATCAGTGTCTTG+AGG - chr5.4:18956582-18956601 MS.gene98466:CDS 45.0%
GTCTTGTAATCCAGACCCTA+AGG - chr5.4:18954398-18954417 MS.gene98466:CDS 45.0%
GTGATGTCGTGCAAGAACAA+GGG + chr5.4:18957389-18957408 None:intergenic 45.0%
GTTCTTCTTGCTGCTGCTAA+GGG - chr5.4:18952923-18952942 MS.gene98466:intron 45.0%
TACTCCTCAATTGTCCCTTC+GGG + chr5.4:18953860-18953879 None:intergenic 45.0%
TAGCAGCAGCAAGAAGAACA+GGG + chr5.4:18952922-18952941 None:intergenic 45.0%
TCCCTCCAATTGTATCCATC+AGG - chr5.4:18954675-18954694 MS.gene98466:intron 45.0%
TCGGGGACATCCGATAAAAT+TGG + chr5.4:18953842-18953861 None:intergenic 45.0%
TCGTAGTTGTCTTTGGTCAG+TGG + chr5.4:18951437-18951456 None:intergenic 45.0%
TCTCTTTGCATCTGCATAGC+AGG + chr5.4:18955098-18955117 None:intergenic 45.0%
TCTGTGTTTCCAAGTGGTAG+TGG - chr5.4:18953249-18953268 MS.gene98466:intron 45.0%
TCTTTACCGTTGTACACCGT+TGG - chr5.4:18952967-18952986 MS.gene98466:intron 45.0%
TGCAACTGTAAATGGACGGA+AGG - chr5.4:18954977-18954996 MS.gene98466:intron 45.0%
TGCGATAATTATCATCGGCC+AGG + chr5.4:18952997-18953016 None:intergenic 45.0%
TGGCAATTCCATGTTGCACT+TGG - chr5.4:18955028-18955047 MS.gene98466:intron 45.0%
TGTGATGTCGTGCAAGAACA+AGG + chr5.4:18957390-18957409 None:intergenic 45.0%
TGTTCTTCTTGCTGCTGCTA+AGG - chr5.4:18952922-18952941 MS.gene98466:intron 45.0%
TGTTGCAAGCAGCAAAGCAT+GGG - chr5.4:18954823-18954842 MS.gene98466:intron 45.0%
TTACGTGTGACGCTTGGTTA+AGG + chr5.4:18955420-18955439 None:intergenic 45.0%
TTAGAACGCGCACCAATTTC+AGG + chr5.4:18951527-18951546 None:intergenic 45.0%
TTAGCAGCAGCAAGAAGAAC+AGG + chr5.4:18952923-18952942 None:intergenic 45.0%
TTGGAACAGGAAGAATGGGA+AGG - chr5.4:18951562-18951581 MS.gene98466:CDS 45.0%
! AAGTGTGATTTGTGGGCAAG+AGG + chr5.4:18953183-18953202 None:intergenic 45.0%
! ATTTTATCGGATGTCCCCGA+AGG - chr5.4:18953842-18953861 MS.gene98466:intron 45.0%
! CATTGCCCTTTTCTTCTCTG+TGG - chr5.4:18957550-18957569 MS.gene98466:CDS 45.0%
! CTCACTCTATCCTTTTGTGC+AGG + chr5.4:18956614-18956633 None:intergenic 45.0%
! GAGGCATTTGAGGAAATCGT+TGG + chr5.4:18953164-18953183 None:intergenic 45.0%
! GGCTTTGTATTCACACCCTT+AGG + chr5.4:18954417-18954436 None:intergenic 45.0%
! TTTTATCGGATGTCCCCGAA+GGG - chr5.4:18953843-18953862 MS.gene98466:intron 45.0%
!! AGAATTGTGTTGACTCGTGG+GGG - chr5.4:18952090-18952109 MS.gene98466:intron 45.0%
!! GCTTTAATTTGCAGGTGTGG+TGG - chr5.4:18952544-18952563 MS.gene98466:intron 45.0%
!!! ATATTATTTTTAGATATTTT+GGG + chr5.4:18956134-18956153 None:intergenic 5.0%
AAACCAGATCGTCTTGGGAG+AGG + chr5.4:18952167-18952186 None:intergenic 50.0%
AAACCTCTCCCAAGACGATC+TGG - chr5.4:18952161-18952180 MS.gene98466:intron 50.0%
AAGGGTGAAGAACAGGGTCA+AGG + chr5.4:18956355-18956374 None:intergenic 50.0%
ACAAGGAGCTGGTGAAAGCT+GGG - chr5.4:18957246-18957265 MS.gene98466:intron 50.0%
ACCCAAAGCCTAAATGCCGT+TGG + chr5.4:18952360-18952379 None:intergenic 50.0%
ACGCTATTAGCGTGGTTGGT+CGG - chr5.4:18956293-18956312 MS.gene98466:CDS 50.0%
ACTCCTCAATTGTCCCTTCG+GGG + chr5.4:18953859-18953878 None:intergenic 50.0%
ATCTTGTGGGACATGGTCTG+TGG - chr5.4:18951483-18951502 MS.gene98466:CDS 50.0%
ATTCCACATCCTCTATGGGG+AGG - chr5.4:18952666-18952685 MS.gene98466:intron 50.0%
CAGCTCAGCAACAAGAGCTA+GGG + chr5.4:18952801-18952820 None:intergenic 50.0%
CGTACCAAGGGTGAAGAACA+GGG + chr5.4:18956361-18956380 None:intergenic 50.0%
GCCCAATTTCGCTAATAGCG+TGG - chr5.4:18956496-18956515 MS.gene98466:CDS 50.0%
GCCGATCCAGATATTGAGCA+AGG - chr5.4:18951701-18951720 MS.gene98466:CDS 50.0%
GGTCTTCCAACGGTGTACAA+CGG + chr5.4:18952976-18952995 None:intergenic 50.0%
GGTGAAAGCTGGGGAGAAAT+GGG - chr5.4:18957256-18957275 MS.gene98466:intron 50.0%
GTATTCACACCCTTAGGGTC+TGG + chr5.4:18954411-18954430 None:intergenic 50.0%
TACAGAAAGCCACAAGGAGC+TGG - chr5.4:18957235-18957254 MS.gene98466:intron 50.0%
TCAATGGCCCATAAGAGGTC+AGG + chr5.4:18954885-18954904 None:intergenic 50.0%
TCACAACAAGGGTTCGCACA+AGG + chr5.4:18954334-18954353 None:intergenic 50.0%
TCAGCTCAGCAACAAGAGCT+AGG + chr5.4:18952802-18952821 None:intergenic 50.0%
TCATGGAAGCCTTGCAAGGA+TGG - chr5.4:18955895-18955914 MS.gene98466:CDS 50.0%
TCCCCAAACCAGATCGTCTT+GGG + chr5.4:18952172-18952191 None:intergenic 50.0%
TCCGGTGCAAAGCACACAAA+CGG + chr5.4:18954375-18954394 None:intergenic 50.0%
TCCGTTTGTGTGCTTTGCAC+CGG - chr5.4:18954371-18954390 MS.gene98466:CDS 50.0%
TCTCCCAAGACGATCTGGTT+TGG - chr5.4:18952166-18952185 MS.gene98466:intron 50.0%
TCTTGTGGGACATGGTCTGT+GGG - chr5.4:18951484-18951503 MS.gene98466:CDS 50.0%
TGATGTCGCACTAATCCCTG+TGG + chr5.4:18955265-18955284 None:intergenic 50.0%
TGGTGAAAGCTGGGGAGAAA+TGG - chr5.4:18957255-18957274 MS.gene98466:intron 50.0%
TTAGCGAAATTGGGCCAGAG+AGG + chr5.4:18956491-18956510 None:intergenic 50.0%
TTCACGTTGCGGTAGTTGCT+GGG - chr5.4:18952696-18952715 MS.gene98466:intron 50.0%
TTGACCCTGTTCTTCACCCT+TGG - chr5.4:18956354-18956373 MS.gene98466:CDS 50.0%
TTGCATCTGCATAGCAGGAC+CGG + chr5.4:18955093-18955112 None:intergenic 50.0%
TTGTACACCGTTGGAAGACC+TGG - chr5.4:18952976-18952995 MS.gene98466:intron 50.0%
TTTCAGCGTAACGAGCCGTT+AGG + chr5.4:18957487-18957506 None:intergenic 50.0%
! AGGAAGAGGCGCAATTGTGA+CGG + chr5.4:18957686-18957705 None:intergenic 50.0%
! CAGGGATTAGTGCGACATCA+CGG - chr5.4:18955265-18955284 MS.gene98466:intron 50.0%
! CTCCCAAGACGATCTGGTTT+GGG - chr5.4:18952167-18952186 MS.gene98466:intron 50.0%
! TCCCAAGACGATCTGGTTTG+GGG - chr5.4:18952168-18952187 MS.gene98466:intron 50.0%
!! AACGGCATTTAGGCTTTGGG+TGG - chr5.4:18952359-18952378 MS.gene98466:intron 50.0%
!! TTGTGGGCAAGAGGCATTTG+AGG + chr5.4:18953174-18953193 None:intergenic 50.0%
AACAGGGTCAAGGACCAACG+TGG + chr5.4:18956345-18956364 None:intergenic 55.0%
AAGAACGGTCCTCCCCATAG+AGG + chr5.4:18952678-18952697 None:intergenic 55.0%
ACCTGGAGCGAAGCAGAATC+TGG + chr5.4:18956454-18956473 None:intergenic 55.0%
ACGCTAATGGCGTACCTCTC+TGG - chr5.4:18956474-18956493 MS.gene98466:CDS 55.0%
AGGTACGCCATTAGCGTACC+TGG + chr5.4:18956471-18956490 None:intergenic 55.0%
CAAGGAGCTGGTGAAAGCTG+GGG - chr5.4:18957247-18957266 MS.gene98466:intron 55.0%
CACAAGGAGCTGGTGAAAGC+TGG - chr5.4:18957245-18957264 MS.gene98466:intron 55.0%
CAGCTTTCACCAGCTCCTTG+TGG + chr5.4:18957247-18957266 None:intergenic 55.0%
CCAACGTGGCACACTGCAAT+TGG + chr5.4:18956331-18956350 None:intergenic 55.0%
CCAATTGCAGTGTGCCACGT+TGG - chr5.4:18956328-18956347 MS.gene98466:CDS 55.0%
CCTGGAGCGAAGCAGAATCT+GGG + chr5.4:18956453-18956472 None:intergenic 55.0%
CTTCACGTTGCGGTAGTTGC+TGG - chr5.4:18952695-18952714 MS.gene98466:intron 55.0%
CTTCGCTCCAGGTACGCTAA+TGG - chr5.4:18956461-18956480 MS.gene98466:CDS 55.0%
CTTGTGGGACATGGTCTGTG+GGG - chr5.4:18951485-18951504 MS.gene98466:CDS 55.0%
GAGGACCGTTCTTCACGTTG+CGG - chr5.4:18952685-18952704 MS.gene98466:intron 55.0%
GCGTACCAAGGGTGAAGAAC+AGG + chr5.4:18956362-18956381 None:intergenic 55.0%
GCTCTTGTTGCTGAGCTGAC+CGG - chr5.4:18952803-18952822 MS.gene98466:intron 55.0%
GGTTTGGGGACGAAGCAATG+AGG - chr5.4:18952182-18952201 MS.gene98466:intron 55.0%
GTCCCCAAACCAGATCGTCT+TGG + chr5.4:18952173-18952192 None:intergenic 55.0%
TCATCGGCCAGGTCTTCCAA+CGG + chr5.4:18952986-18953005 None:intergenic 55.0%
TGTCCCCGAAGGGACAATTG+AGG - chr5.4:18953853-18953872 MS.gene98466:intron 55.0%
! GGAACAAGCATTGCAGCGAG+TGG - chr5.4:18951398-18951417 MS.gene98466:CDS 55.0%
! TGGTTGGTCGGCCTAAGTTC+TGG - chr5.4:18956305-18956324 MS.gene98466:CDS 55.0%
CAGGCTGGACACGGTCGATT+AGG + chr5.4:18955597-18955616 None:intergenic 60.0%
CCCAGATTCTGCTTCGCTCC+AGG - chr5.4:18956450-18956469 MS.gene98466:CDS 60.0%
GCAAGTGGGCCACTTGAGTG+AGG - chr5.4:18956214-18956233 MS.gene98466:CDS 60.0%
GCAGCTTTCACTGTCCCTGG+TGG - chr5.4:18957341-18957360 MS.gene98466:intron 60.0%
GCTGCAGCTTTCACTGTCCC+TGG - chr5.4:18957338-18957357 MS.gene98466:intron 60.0%
GGTCCTCCCCATAGAGGATG+TGG + chr5.4:18952672-18952691 None:intergenic 60.0%
TGCGGTAGTTGCTGGGCACG+AGG - chr5.4:18952703-18952722 MS.gene98466:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 18951392 18957796 18951392 ID=MS.gene98466
chr5.4 mRNA 18951392 18957796 18951392 ID=MS.gene98466.t1;Parent=MS.gene98466
chr5.4 exon 18957466 18957796 18957466 ID=MS.gene98466.t1.exon1;Parent=MS.gene98466.t1
chr5.4 CDS 18957466 18957796 18957466 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18956127 18956630 18956127 ID=MS.gene98466.t1.exon2;Parent=MS.gene98466.t1
chr5.4 CDS 18956127 18956630 18956127 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18955885 18956046 18955885 ID=MS.gene98466.t1.exon3;Parent=MS.gene98466.t1
chr5.4 CDS 18955885 18956046 18955885 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18955096 18955197 18955096 ID=MS.gene98466.t1.exon4;Parent=MS.gene98466.t1
chr5.4 CDS 18955096 18955197 18955096 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18954926 18954973 18954926 ID=MS.gene98466.t1.exon5;Parent=MS.gene98466.t1
chr5.4 CDS 18954926 18954973 18954926 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18954632 18954691 18954632 ID=MS.gene98466.t1.exon6;Parent=MS.gene98466.t1
chr5.4 CDS 18954632 18954691 18954632 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18954055 18954491 18954055 ID=MS.gene98466.t1.exon7;Parent=MS.gene98466.t1
chr5.4 CDS 18954055 18954491 18954055 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
chr5.4 exon 18951392 18952018 18951392 ID=MS.gene98466.t1.exon8;Parent=MS.gene98466.t1
chr5.4 CDS 18951392 18952018 18951392 ID=cds.MS.gene98466.t1;Parent=MS.gene98466.t1
Gene Sequence

>MS.gene98466

ATGACAGGAACAAGCATTGCAGCGAGTGGAATAGTTCTTGAACCACTGACCAAAGACAACTACGAAAACTGGAGCTGTCTTGTTAGAAACTATCTTGTGGGACATGGTCTGTGGGGTGTTGTGACCTCTATTCCTGAAATTGGTGCGCGTTCTAAGACTGAATATGAGATTTGGAACAGGAAGAATGGGAAGGCATTGCATATCATTCAACTAACATGTGGACCAGAGAATCTTACTCATATTAGAGATCTTCATATTGCTAAAGAAGCCTGGAATAAATTGGGTGCAACTTATAGCTCAGATTTGCAAGCCGATCCAGATATTGAGCAAGGTATATGTAAATTTATATATGTACACATTAATCTATTCTTTGGGTAAATCACGTAATGATCCCTATACATATTAGACATAGTTTCTAAATGTAGTGAAAGGACAAAAGTATTTTTAAGTGTCTTTTGTGAGTCATGGACTAAACCGACTATGAGACAGGACTTAATTGATGATCAAAATCTGTTTGTTTTTTTATGAAATCTAAAATTTTAAATATGTGTAAGAAAAATAAATTCATTAATTTCAACATTAATTCATATGTTTGATTTCATGGGAAATCAATTATTGAAGTATACAATATTTATTATTTATTTGACATCCACTTCATAATAAATAAAGTGTGTGAGTGAGGACAAAATATATTGAAAAGAATTGTGTTGACTCGTGGGGGTCTATCGACAATACTTAAAGTTGTATGAGATGTTACAAATGGTTTTGGAAACCTCTCCCAAGACGATCTGGTTTGGGGACGAAGCAATGAGGAAAGATTTTTAAAGGAGGAAGCTAATGTTTATTAGCAATAGGTAAGGGAGAAGCAATAAGGAATTTTAAGAATTAATGTTTATTAGCAAGTCAGTGTTTATTAAACAGTAAAAGTTTAGGTCCCCAATCTTAAGCGTTGTAACTAAGAACAACCAACGGCATTTAGGCTTTGGGTGGACAATTTTGTCCCAAAAATAAGTACATTTGAATATTGTGATTTTAGTGGGACACTAAAATAGATCTTCACTCATTTTCTTAAATACTTATAATATTAGGGTCCAATTAGTAAGGAAAATAAATGGAAGAAATATGTATATGTTTGTAGCTTAAAACATACATGCTTTAATTTGCAGGTGTGGTGGATGATAGTCTCCTTCAATATAAATCGCTGCACAAGTATATTGAGAGCGGTGAGTGGAAAGATGCAAACTCGTTTATTAAGAGGGACAGTACAGCAATATATTCCACATCCTCTATGGGGAGGACCGTTCTTCACGTTGCGGTAGTTGCTGGGCACGAGGAAATTGTGAAGAAATTGGTGAAGGAAGGGAAAGATAAGTTAGTGAAAATGAAAGACAATCGAGGTTACACAGCCCTAGCTCTTGTTGCTGAGCTGACCGGAAACACGAATATAGCGAAGTGTATGACTATGGTATATAAGAAAATATCACGGTCAGAGGACCTGTTATCTATGAAGACCAATGATGGTGAAATCCCTGTTCTTCTTGCTGCTGCTAAGGGACACAAAGAAATGACACGTTATCTTTACCGTTGTACACCGTTGGAAGACCTGGCCGATGATAATTATCGCAATGGTGTTTTGCTTCTTACACGATGTATCACTGCAGAAATATTTGGTTCGTGGTTACTGAATTTTAATTAAATTGAGAGTATTTTCCATATTAGTGTTTGATGTCGATTCAATATTGTATCTTAGGTGTGGCTTTGAGTTTACTCCAACGATTTCCTCAAATGCCTCTTGCCCACAAATCACACTTTGAATCGGATTGTGTGCAACCATTATACGCATTGGCACGCATGCCTTCTGTGTTTCCAAGTGGTAGTGGATATGGGTTCATACGACAATTCTTTAACGATAGTAAGTTTTTTTTGTTTTTTGTTTTTTTCTGTCTCCATTTCGCTTACTTTTCAAATTGGGTCATCTTAAAATTCTCGGTAGTGAAATAGCTAGGTATGCAAACTTATAATGTTACACGGTGAAATGAATTTTTATACAAATCTAAAATTATTTGTACGTTGTTGAGATACATAAAGATAAATATTGTTTAATAAATGATCAATATAACTTTATAAAAGAAATTTAAAGGTGATTTATAAAAGGGAAATGCTAACCAGTGTCCTTTATAAAATACAAACTTTTGATCCAACACTTAATTTAACATCTCCACTACACATATAGTATTCATTTTATCATCTTTACTTCCAATAATATATTAAAGGAGTTTTACTTTAATCAAAAGAGTTTTACATGATCTGTTTGGAAATTGGAAGCATTATATATTATGCTGAATATTTTAAAACTCGATCTTGTGTATCCAAAAACTCATCAAACTTCACTCTTGTGCGATACTTTTCTTCTCAAGACCAACTTTACAAAATTGAGGAGTATCGTTCCAATTTTATCGGATGTCCCCGAAGGGACAATTGAGGAGTAAATAATGAATGAGATTGGAATAAAAATCATCAAACAAGATAAATACTCAAATTTTGCATTCAAGTGTTTTCTTTCTGTCTGCATCCAAGACTAATCTACTTCCGCTTTTAGTTTTGAGATTACCTGAAAGAGAAGTGCATGAATTTTACGGGATAATTGTGAGTCTTGCAAATATTGCCAAAGAGGAAAAACAACACAAAGCTTCTTTCGTAGGTATGGAATATTACACTCCTAATTCTTCTTTCTAGAGCTTATTATGTTCATGCAGACAAGTTTTTCTACAATATGCGAATGGCGATTCTGAGGATTATTAATCTTCTCGGTTGTTTCTTTAGGAAGGTTATGTGGACGGATGTTGAATTTATCGCCAGTAAAGCAGTTGGGTAAGTTTTCTATCTATCAAATTATTTTATATATCAAATTTTTCTTTAATAATTTTTATATATCAAAGCCTTGTGCGAACCCTTGTTGTGATCTGTGATCTTTTTGTTTCCGTTTGTGTGCTTTGCACCGGATACGTCTTGTAATCCAGACCCTAAGGGTGTGAATACAAAGCCAGTCCCTGTTATATATGTGTGTTCATATGTCATTTTTCTTTTACGCATATTTTTTTTCAGGTCGACTACTCATACTTGTTCACATGTCATTTCAGAATTCGGTACTATTAAAGTTCTCTGGTATGTAATTGTTAATCCTTGTTTAAATCGGTATATTAGATTGATAATTAAGATTATCCTTATTGTAAGTACAATCATTCCTCCCCTCTTTGTGATTAATTAATTAAATTTATTTAAATCCCTCCAATTGTATCCATCAGGAATAAGGAAAATATATAATCAGAAAATGACCTACCGTGTAGCTCTTGAAATATTGAGTTGCTTGCACCAAAGAATTCAAGAGTTTAAGGAATCAGAACTTAGAGAGGCTTCGGCTTACGATGCAATGTTGCAAGCAGCAAAGCATGGGATTATTGAGTTTATAGATGCAATGAGAAAGGGTAATCCTGACCTCTTATGGGCCATTGATAAAAATAAAAGAGGCGTATTTTCACATGCAATTTTGAACCGTAGAAAAGCCGTTTTCGAACTCATACATGATGCAACTGTAAATGGACGGAAGGAGATAGTTAAATGCCGTGTAGACGCATTTGGCAATTCCATGTTGCACTTGGCAGGATATTTAGGGCCTTCCTCTGATCTTGATCGTAGATCCGGTCCTGCTATGCAGATGCAAAGAGAAATTCTATGGTTCAAGGTGATTTCTTATGTCTCGTCTTTTTTTACCTCTCACTCGCATACATACATGCGTGCAGCTTATATGTTGGAACAAAGAGGTGATGAAGTAGTTTTGCATCAAAAACAAGATAAGTATTTGTATCGTCTCCACAGGGATTAGTGCGACATCACGGATATTTCAACATCAAATATCATTCTAAGTAAAAAGGGTGATTGTTTGTTTGAATTTACAACTATGTTAACTAAATGCAAAAAGTAAAAGATGAGATTAATAAGGATTGAAACTTGTTAGGAGTAGCGTTCCTTAACCAAGCGTCACACGTAAACTAATGATCCATACGAATTCTAGCTTTATAAACAACATTATCACAATCAATTCTAAACTATCCTTCGTGTCCAAAGCGATATAATTAATTCTAAGGTATCGTTTAAACATTCGTGTCCAAATCCCTTAAACGATAACAAAGTCGATCGAATAACCTAATCGACCGTGTCCAGCCTGATTAAGTATCCGAAAGCATTTAACTCTTGATTATGGTGATTATCACAAGATTAACAAACTTGTCAAGAATGATATAACCTAAGATATATTGCTACTCTAGCTCTAGATTCAAGAGTTTGTGTCCAAATCATCTTGAATCTCATTGAAAGCATTAACACAAGAATAACAACAATATTGAATATAAATTGCTAGAATCATATTTTGCAAGATCAAAAGATTACATGTTAGCAAGAATCAAGTACCTCTCATCCCAACAAAGAGTGTTTAGCTACACATCATCATGGAAGCCTTGCAAGGATGGATTGAAAAGGAAGGAACCATTACACTTGTGATGTCTCAACAAAGGAATAAGGATCCAACTTCCAAAATCACTCTCACTTCATATGATCTACCCTATTTTCTCTCTAAGATATTACAATGAAAACTAAGAGAAAAGCTATGAAAAACTAACTAAGTTCTAAGACTATCTAATAATTTTCCCTATTGAACTACTAATATATATAATAAAGCAATCCCCAAAATATCTAAAAATAATATCTAACATAATATCTAATAATATCTTACATAAATATCTTACATAAATATCTTACATAAATAGCAAGTGGGCCACTTGAGTGAGGCTAAACTTCTATTTTAAAGGGCTGAGTTTTTTACACCTACGCTAATAGCGAAATATACGCTATTAGCGTGGTTGGTCGGCCTAAGTTCTGGCCAATTGCAGTGTGCCACGTTGGTCCTTGACCCTGTTCTTCACCCTTGGTACGCTAATAGCGTAGTCTTCTGGAGCTTTTACGCTAATAGCGTAATTTACGCTAATAGCGTATTTCTTCAAACCCAGATTCTGCTTCGCTCCAGGTACGCTAATGGCGTACCTCTCTGGCCCAATTTCGCTAATAGCGTGGAATACGCTAATAGCGAATTCTTCAAAACCAGCTTTTGCTAATTTGCACTTTTTCATGATTTTTGGTCTTTGATCAGTGTCTTGAGGATAATTCCTGCACAAAAGGATAGAGTGAGATATATAAAGCGTAATAAGGCATTTAACACTTATTTCTCGGCTTTTCCGTCAATTACTTGCAGAACAAGTAACAAAAAGTGCTTAAAATATAACATGAATTTAACACTTTTTTGACACTTATCAAGAGGTTATTTGATGATTTTGAGAGATAATAGAAGAGAGAACTGAGAAGAGATTAGAGAGTTTAGGAGAAAATAGACTTGTATTGTATGTTGAAAAATTCTTTAATACAAACACATATGTGAGCTTGTCTATTTATAGACTACATGACTTGAGATACAAGTTAGCTCCTATAACAACTTCACAACCAACTTCAAAAACTAAATTTGAAATTCTGGAAACATTTATAATTTATTATAGTCAACATCCAATTTTGAGATACATGACATTTAAATAAGTGGTTAATTACGTTCTACAAATGATTAATGATTAGCCACACATTATTATCTTATTCATTAAGTGTTCACTGAATGTAATTAACCAAGAATTTTAACCGCGCTATAACATATTGTGAAATTTTGTGAAGGCAGTGGAGGAAATTGTGCACCCCAAGTGTAAGGAAGCAAAAAATGCTGACGATAAGAAGCCTCGTGAGCTATTTACAGAAAGCCACAAGGAGCTGGTGAAAGCTGGGGAGAAATGGGCAAAAGATACAGCTGGTTCATTTACTCTTGTGGCTACACTCATCACTACTATCATGTTTGCTGCAGCTTTCACTGTCCCTGGTGGAAACAATCAAGACAATGGAGTTCCCTTGTTCTTGCACGACATCACATTTGATGTGTTTATTATAGCAGATGCAGCATCTCTTTTCACTTCTTCAACTTCGGTCCTTCTCTTCATTGGAATCCTAACGGCTCGTTACGCTGAAAAAGATTTCCTTAAGTCATTGCCACTAAGGTTACTTTTCGCACTCATTGCCCTTTTCTTCTCTGTGGTTTCTATGATAGTTGCCTTCTGTGCTTCACTTGCTATGCTCTTAAAGGGACATCATAGAGTCATAATAACAGCAATGTCATTTGCCAGTGTTCCTGTTATCGTTCTAGTTCCGTCACAATTGCGCCTCTTCCTTGAGATTTTCAAGTCTACAGTATTATATCCAATTGAAACTTATTACTTATCTAGAACGAACTGTAACATTTGTTTTTGCATTGATTGCTAA
Protein sequence

>MS.gene98466.t1

MTGTSIAASGIVLEPLTKDNYENWSCLVRNYLVGHGLWGVVTSIPEIGARSKTEYEIWNRKNGKALHIIQLTCGPENLTHIRDLHIAKEAWNKLGATYSSDLQADPDIEQGVVDDSLLQYKSLHKYIESGEWKDANSFIKRDSTAIYSTSSMGRTVLHVAVVAGHEEIVKKLVKEGKDKLVKMKDNRGYTALALVAELTGNTNIAKCMTMVYKKISRSEDLLSMKTNDGEIPVLLAAAKGHKEMTRYLYRCTPLEDLADDNYRNGVLLLTRCITAEIFGVALSLLQRFPQMPLAHKSHFESDCVQPLYALARMPSVFPSGSGYGFIRQFFNDILRLPEREVHEFYGIIVSLANIAKEEKQHKASFVGRLCGRMLNLSPVKQLGRLLILVHMSFQNSVLLKFSGIRKIYNQKMTYRVALEILSCLHQRIQEFKESELREASAYDAMLQAAKHGIIEFIDAMRKGNPDLLWAIDKNKRGVFSHAILNRRKAVFELIHDATVNGRKEIVKCRVDAFGNSMLHLAGYLGPSSDLDRRSGPAMQMQREILWFKEIVHPKCKEAKNADDKKPRELFTESHKELVKAGEKWAKDTAGSFTLVATLITTIMFAAAFTVPGGNNQDNGVPLFLHDITFDVFIIADAASLFTSSTSVLLFIGILTARYAEKDFLKSLPLRLLFALIALFFSVVSMIVAFCASLAMLLKGHHRVIITAMSFASVPVIVLVPSQLRLFLEIFKSTVLYPIETYYLSRTNCNICFCIDC