AlfalfaGEDB | MS.gene99821

M. sativa cultivar XinJiangDaYe / MS.gene99821

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99821.t1	XP_003596635.1	93.6	220	11	1	1	220	1	217	1.20E-111	412.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99821.t1	O48915	46.7	182	90	4	8	185	13	191	2.1e-35	150.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99821.t1	G7IJL6	93.6	220	11	1	1	220	1	217	8.7e-112	412.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene99821	0.814268	1.68E-51	-1.69E-46
MS.gene049452	MS.gene99821	0.800012	1.76E-48	-1.69E-46
MS.gene050026	MS.gene99821	0.831392	1.71E-55	-1.69E-46
MS.gene050759	MS.gene99821	0.8143	1.65E-51	-1.69E-46
MS.gene050953	MS.gene99821	0.803563	3.28E-49	-1.69E-46
MS.gene051279	MS.gene99821	0.807929	3.98E-50	-1.69E-46
MS.gene051574	MS.gene99821	0.804225	2.39E-49	-1.69E-46
MS.gene052333	MS.gene99821	0.81277	3.59E-51	-1.69E-46
MS.gene052493	MS.gene99821	0.814839	1.26E-51	-1.69E-46
MS.gene052582	MS.gene99821	0.820353	7.18E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006756	MS.gene99821	PPI
MS.gene031261	MS.gene99821	PPI
MS.gene031547	MS.gene99821	PPI
MS.gene69812	MS.gene99821	PPI
MS.gene87282	MS.gene99821	PPI
MS.gene96823	MS.gene99821	PPI
MS.gene99821	MS.gene87282	PPI
MS.gene99821	MS.gene031261	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99821.t1	MTR_2g082990	93.636	220	11	1	1	220	1	217	6.59e-150	415
MS.gene99821.t1	MTR_4g081200	48.276	203	99	4	8	207	11	210	1.44e-58	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99821.t1	AT3G20600	42.381	210	113	5	8	213	13	218	1.47e-46	153
MS.gene99821.t1	AT3G20590	41.206	199	102	5	9	202	14	202	3.87e-35	125
MS.gene99821.t1	AT3G20610	34.483	203	119	7	22	217	26	221	1.31e-27	105
MS.gene99821.t1	AT4G05220	22.159	176	122	4	13	180	47	215	9.99e-12	62.8

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Find 61 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGATCGGGTATGGGG+AGG	0.556071	2.3:+14635704	MS.gene99821:CDS
AAAAGCTAAGAAGAATGGAG+TGG	0.661701	2.3:+14635565	MS.gene99821:CDS
AAAGAGATCGGGTATGGGGA+GGG	0.451284	2.3:+14635705	MS.gene99821:CDS
AAATGGGAAAGAAAAGTGTG+AGG	0.693699	2.3:+14635759	MS.gene99821:CDS
AAGAAAAGTGTGAGGCTTGG+AGG	0.475890	2.3:+14635767	MS.gene99821:CDS
AAGAATGGAGTGGTGGAAGC+TGG	0.512376	2.3:+14635575	MS.gene99821:CDS
AAGAGATCGGGTATGGGGAG+GGG	0.523912	2.3:+14635706	MS.gene99821:CDS
AAGGTGAAGTTAAGATGAAT+AGG	0.325470	2.3:-14635470	None:intergenic
AATGTGGAAATTGGAGATTC+TGG	0.246829	2.3:+14635731	MS.gene99821:CDS
AATTTAACTGCGAGTGTTAA+GGG	0.363654	2.3:+14635605	MS.gene99821:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTGAAGTTAAGATGAAT+AGG	-	chr2.3:14635473-14635492	None:intergenic	30.0%
AATTTAACTGCGAGTGTTAA+GGG	+	chr2.3:14635605-14635624	MS.gene99821:CDS	30.0%
AGGTGAAGTTAAGATGAATA+GGG	-	chr2.3:14635472-14635491	None:intergenic	30.0%
CTTGTTAATGCTACTGTAAA+TGG	+	chr2.3:14635521-14635540	MS.gene99821:CDS	30.0%
GAGAAAAAAGCTAAGAAGAA+TGG	+	chr2.3:14635560-14635579	MS.gene99821:CDS	30.0%
TATGCTTAGCCATATGAATA+GGG	-	chr2.3:14635303-14635322	None:intergenic	30.0%
TTTACAGTAGCATTAACAAG+TGG	-	chr2.3:14635521-14635540	None:intergenic	30.0%
TTTGGTATACGAAAAGAGAT+CGG	+	chr2.3:14635693-14635712	MS.gene99821:CDS	30.0%
AAAAGCTAAGAAGAATGGAG+TGG	+	chr2.3:14635565-14635584	MS.gene99821:CDS	35.0%
AATGTGGAAATTGGAGATTC+TGG	+	chr2.3:14635731-14635750	MS.gene99821:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	14635230	14635892	14635230	ID=MS.gene99821
chr2.3	mRNA	14635230	14635892	14635230	ID=MS.gene99821.t1;Parent=MS.gene99821
chr2.3	exon	14635230	14635892	14635230	ID=MS.gene99821.t1.exon1;Parent=MS.gene99821.t1
chr2.3	CDS	14635230	14635892	14635230	ID=cds.MS.gene99821.t1;Parent=MS.gene99821.t1

Gene Sequence

>MS.gene99821

ATGGCATCATCAAAACCCAACAGCTGTTGTTCATGCTGTTCAGGTTTCATCATAACCATAGGCTTAATGGCCCTATTCATATGGCTAAGCATACGTGTCGATGAACCAAAGCTTTACATAGACAAAATTTACCTTCCTGCCCTCAACAAAACCCTAAACACAACAGCAAGATCAAACACCACTATCACCTTCACGTTAAAACTTGTTAACCCTAATAAAGATAAAGGTATTCAATATGACCCTATTCATCTTAACTTCACCTTTTACAATACTCTCAACACTACTCTTCCACTTGTTAATGCTACTGTAAATGGATTCTATCAAGGGCATGAGAAAAAAGCTAAGAAGAATGGAGTGGTGGAAGCTGGTGTTAAGAATTTAACTGCGAGTGTTAAGGGTGTTGTTGATGGTAAAGTTTATCTAAGGGTGGATTATTTTACTGCGGTTAAGTATAAGATTTTGGTTTGGTATACGAAAAGAGATCGGGTATGGGGAGGGGCAAATGTGGAAATTGGAGATTCTGGGGAGAAAATGGGAAAGAAAAGTGTGAGGCTTGGAGGGAATGAACCAAGGGTGATAGTGTCCGGCGCATGGAAAGTGTATGGAGGCTATCGTGCGCTTCTTGTGTTTTGGGTCTTGTTTATTGGTCTTGGGTTTACTTGA

Protein sequence

>MS.gene99821.t1

MASSKPNSCCSCCSGFIITIGLMALFIWLSIRVDEPKLYIDKIYLPALNKTLNTTARSNTTITFTLKLVNPNKDKGIQYDPIHLNFTFYNTLNTTLPLVNATVNGFYQGHEKKAKKNGVVEAGVKNLTASVKGVVDGKVYLRVDYFTAVKYKILVWYTKRDRVWGGANVEIGDSGEKMGKKSVRLGGNEPRVIVSGAWKVYGGYRALLVFWVLFIGLGFT