Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011034.01.T01 | XP_003597357.1 | 82.812 | 384 | 14 | 3 | 1 | 333 | 1 | 383 | 0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011034.01.T01 | Q0WQX7 | 50.794 | 378 | 132 | 4 | 6 | 332 | 15 | 389 | 4.68E-132 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011034.01.T01 | G7IHP5 | 82.812 | 384 | 14 | 3 | 1 | 333 | 1 | 383 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048700.01 | MsG0280011034.01 | 0.802994 | 4.307614e-49 | 2.140063e-46 |
| MsG0080048829.01 | MsG0280011034.01 | 0.806869 | 6.672376e-50 | 3.661885e-47 |
| MsG0080049140.01 | MsG0280011034.01 | 0.802761 | 4.812279e-49 | 2.376831e-46 |
| MsG0180000195.01 | MsG0280011034.01 | 0.801928 | 7.142945e-49 | 3.453790e-46 |
| MsG0180000300.01 | MsG0280011034.01 | 0.805300 | 1.426534e-49 | 7.520397e-47 |
| MsG0180000353.01 | MsG0280011034.01 | 0.825586 | 4.323680e-54 | 3.957615e-51 |
| MsG0180000360.01 | MsG0280011034.01 | 0.818107 | 2.329540e-52 | 1.727843e-49 |
| MsG0180001565.01 | MsG0280011034.01 | 0.825699 | 4.064771e-54 | 3.732729e-51 |
| MsG0180003943.01 | MsG0280011034.01 | 0.811504 | 6.774732e-51 | 4.201050e-48 |
| MsG0180003995.01 | MsG0280011034.01 | 0.807614 | 4.636959e-50 | 2.594480e-47 |
| MsG0180004099.01 | MsG0280011034.01 | 0.806867 | 6.677826e-50 | 3.664752e-47 |
| MsG0180004320.01 | MsG0280011034.01 | 0.804676 | 1.927041e-49 | 9.996906e-47 |
| MsG0180004754.01 | MsG0280011034.01 | 0.800871 | 1.175888e-48 | 5.535879e-46 |
| MsG0180004989.01 | MsG0280011034.01 | 0.805824 | 1.107686e-49 | 5.918775e-47 |
| MsG0180006000.01 | MsG0280011034.01 | 0.818788 | 1.632503e-52 | 1.233867e-49 |
| MsG0180006260.01 | MsG0280011034.01 | 0.837601 | 4.720659e-57 | 6.163107e-54 |
| MsG0280010779.01 | MsG0280011034.01 | 0.820339 | 7.226576e-53 | 5.702343e-50 |
| MsG0280011014.01 | MsG0280011034.01 | 0.800587 | 1.343613e-48 | 6.280015e-46 |
| MsG0280011034.01 | MsG0280011154.01 | 0.813727 | 2.210858e-51 | 1.455196e-48 |
| MsG0280011034.01 | MsG0280011258.01 | 0.831173 | 1.939431e-55 | 2.088083e-52 |
| MsG0280011034.01 | MsG0280011282.01 | 0.824086 | 9.763113e-54 | 8.561398e-51 |
| MsG0280011034.01 | MsG0380012101.01 | 0.802955 | 4.388921e-49 | 2.178357e-46 |
| MsG0280011034.01 | MsG0380014289.01 | 0.802864 | 4.581624e-49 | 2.268835e-46 |
| MsG0280011034.01 | MsG0380014387.01 | 0.803919 | 2.770572e-49 | 1.409676e-46 |
| MsG0280011034.01 | MsG0380015548.01 | 0.830103 | 3.545534e-55 | 3.699371e-52 |
| MsG0280011034.01 | MsG0380016140.01 | 0.838497 | 2.777006e-57 | 3.726160e-54 |
| MsG0280011034.01 | MsG0380016703.01 | 0.822036 | 2.936118e-53 | 2.429353e-50 |
| MsG0280011034.01 | MsG0380016994.01 | 0.819715 | 1.004027e-52 | 7.786473e-50 |
| MsG0280011034.01 | MsG0380017195.01 | 0.802557 | 5.301643e-49 | 2.604793e-46 |
| MsG0280011034.01 | MsG0380017372.01 | 0.817293 | 3.554131e-52 | 2.577985e-49 |
| MsG0280011034.01 | MsG0480018230.01 | 0.837430 | 5.223402e-57 | 6.783408e-54 |
| MsG0280011034.01 | MsG0480018846.01 | 0.827520 | 1.495113e-54 | 1.446784e-51 |
| MsG0280011034.01 | MsG0480018919.01 | 0.812102 | 5.020170e-51 | 3.163039e-48 |
| MsG0280011034.01 | MsG0480019276.01 | 0.801527 | 8.633319e-49 | 4.132236e-46 |
| MsG0280011034.01 | MsG0480019710.01 | 0.802936 | 4.428647e-49 | 2.196987e-46 |
| MsG0280011034.01 | MsG0480019922.01 | 0.816391 | 5.665362e-52 | 4.009220e-49 |
| MsG0280011034.01 | MsG0480020495.01 | 0.808804 | 2.586720e-50 | 1.493179e-47 |
| MsG0280011034.01 | MsG0480020965.01 | 0.805464 | 1.317961e-49 | 6.977654e-47 |
| MsG0280011034.01 | MsG0480021013.01 | 0.801901 | 7.236068e-49 | 3.496483e-46 |
| MsG0280011034.01 | MsG0480021778.01 | 0.813131 | 2.988899e-51 | 1.935540e-48 |
| MsG0280011034.01 | MsG0480022620.01 | 0.800993 | 1.110670e-48 | 5.245312e-46 |
| MsG0280011034.01 | MsG0480023421.01 | 0.807254 | 5.529280e-50 | 3.065043e-47 |
| MsG0280011034.01 | MsG0480023500.01 | 0.800291 | 1.544122e-48 | 7.163236e-46 |
| MsG0280011034.01 | MsG0480023620.01 | 0.840971 | 6.303307e-58 | 9.128066e-55 |
| MsG0280011034.01 | MsG0580024330.01 | 0.847447 | 1.150088e-59 | 2.044799e-56 |
| MsG0280011034.01 | MsG0580024489.01 | 0.855141 | 7.699295e-62 | 1.759883e-58 |
| MsG0280011034.01 | MsG0580025352.01 | 0.813046 | 3.121276e-51 | 2.016645e-48 |
| MsG0280011034.01 | MsG0580025614.01 | 0.840121 | 1.052460e-57 | 1.484566e-54 |
| MsG0280011034.01 | MsG0580026002.01 | 0.807698 | 4.451116e-50 | 2.495957e-47 |
| MsG0280011034.01 | MsG0580026186.01 | 0.802174 | 6.358090e-49 | 3.093600e-46 |
| MsG0280011034.01 | MsG0580028176.01 | 0.837097 | 6.354883e-57 | 8.168628e-54 |
| MsG0280011034.01 | MsG0580029640.01 | 0.829457 | 5.094312e-55 | 5.216733e-52 |
| MsG0280011034.01 | MsG0580029712.01 | 0.803394 | 3.560331e-49 | 1.787118e-46 |
| MsG0280011034.01 | MsG0680030321.01 | 0.804103 | 2.536687e-49 | 1.296724e-46 |
| MsG0280011034.01 | MsG0680030436.01 | 0.802538 | 5.349498e-49 | 2.627141e-46 |
| MsG0280011034.01 | MsG0680030615.01 | 0.804468 | 2.129053e-49 | 1.098586e-46 |
| MsG0280011034.01 | MsG0680030740.01 | 0.801076 | 1.067759e-48 | 5.053129e-46 |
| MsG0280011034.01 | MsG0680030949.01 | 0.815381 | 9.517902e-52 | 6.551893e-49 |
| MsG0280011034.01 | MsG0680031384.01 | 0.812367 | 4.392579e-51 | 2.787644e-48 |
| MsG0280011034.01 | MsG0680031506.01 | 0.806654 | 7.405112e-50 | 4.041300e-47 |
| MsG0280011034.01 | MsG0780036477.01 | 0.804740 | 1.868652e-49 | 9.710896e-47 |
| MsG0280011034.01 | MsG0780036752.01 | 0.811218 | 7.812906e-51 | 4.808289e-48 |
| MsG0280011034.01 | MsG0780036773.01 | 0.802720 | 4.907173e-49 | 2.421161e-46 |
| MsG0280011034.01 | MsG0780038424.01 | 0.824916 | 6.227497e-54 | 5.592937e-51 |
| MsG0280011034.01 | MsG0780038602.01 | 0.817925 | 2.560581e-52 | 1.889874e-49 |
| MsG0280011034.01 | MsG0780038603.01 | 0.803757 | 2.993107e-49 | 1.516512e-46 |
| MsG0280011034.01 | MsG0780039425.01 | 0.822549 | 2.231818e-53 | 1.874119e-50 |
| MsG0280011034.01 | MsG0780039654.01 | 0.804939 | 1.697574e-49 | 8.867310e-47 |
| MsG0280011034.01 | MsG0780039655.01 | 0.833135 | 6.344676e-56 | 7.241478e-53 |
| MsG0280011034.01 | MsG0780039656.01 | 0.805040 | 1.616941e-49 | 8.467474e-47 |
| MsG0280011034.01 | MsG0780039712.01 | 0.829846 | 4.096743e-55 | 4.243845e-52 |
| MsG0280011034.01 | MsG0780040023.01 | 0.809304 | 2.022023e-50 | 1.182951e-47 |
| MsG0280011034.01 | MsG0780041469.01 | 0.805334 | 1.403281e-49 | 7.404267e-47 |
| MsG0280011034.01 | MsG0780041667.01 | 0.801988 | 6.943226e-49 | 3.362267e-46 |
| MsG0280011034.01 | MsG0880042845.01 | 0.814225 | 1.716680e-51 | 1.145239e-48 |
| MsG0280011034.01 | MsG0880042961.01 | 0.837259 | 5.776849e-57 | 7.462033e-54 |
| MsG0280011034.01 | MsG0880043516.01 | 0.843173 | 1.648958e-58 | 2.558185e-55 |
| MsG0280011034.01 | MsG0880043547.01 | 0.820601 | 6.292587e-53 | 5.001097e-50 |
| MsG0280011034.01 | MsG0880043994.01 | 0.800964 | 1.125697e-48 | 5.312242e-46 |
| MsG0280011034.01 | MsG0880045506.01 | 0.809811 | 1.573639e-50 | 9.331205e-48 |
| MsG0280011034.01 | MsG0880047226.01 | 0.861128 | 1.274964e-63 | 3.569053e-60 |
| MsG0280011034.01 | MsG0880047666.01 | 0.813837 | 2.091274e-51 | 1.380505e-48 |
| MsG0280006540.01 | MsG0280011034.01 | 0.800993 | 1.110338e-48 | 5.243806e-46 |
| MsG0280007359.01 | MsG0280011034.01 | 0.804943 | 1.694756e-49 | 8.853395e-47 |
| MsG0280007452.01 | MsG0280011034.01 | 0.804255 | 2.358020e-49 | 1.210053e-46 |
| MsG0280007761.01 | MsG0280011034.01 | 0.809094 | 2.242576e-50 | 1.304646e-47 |
| MsG0280009266.01 | MsG0280011034.01 | 0.813007 | 3.182682e-51 | 2.054236e-48 |
| MsG0280009514.01 | MsG0280011034.01 | 0.823062 | 1.695430e-53 | 1.444486e-50 |
| MsG0280009752.01 | MsG0280011034.01 | 0.802023 | 6.828250e-49 | 3.309615e-46 |
| MsG0280010491.01 | MsG0280011034.01 | 0.804085 | 2.558329e-49 | 1.307185e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011034.01.T01 | MTR_2g097210 | 82.812 | 384 | 14 | 3 | 1 | 333 | 1 | 383 | 0.0 | 589 |
| MsG0280011034.01.T01 | MTR_2g097210 | 79.070 | 301 | 11 | 3 | 1 | 250 | 1 | 300 | 2.35e-165 | 462 |
| MsG0280011034.01.T01 | MTR_4g021755 | 50.327 | 306 | 98 | 3 | 37 | 291 | 34 | 336 | 2.88e-109 | 324 |
| MsG0280011034.01.T01 | MTR_7g498280 | 47.647 | 340 | 111 | 5 | 1 | 287 | 1 | 326 | 1.41e-86 | 263 |
| MsG0280011034.01.T01 | MTR_7g061780 | 47.541 | 305 | 103 | 4 | 23 | 275 | 4 | 303 | 2.92e-86 | 263 |
| MsG0280011034.01.T01 | MTR_1g101310 | 42.249 | 329 | 120 | 5 | 16 | 288 | 5 | 319 | 1.45e-74 | 233 |
| MsG0280011034.01.T01 | MTR_3g073530 | 32.891 | 377 | 189 | 7 | 13 | 331 | 9 | 379 | 2.09e-66 | 214 |
| MsG0280011034.01.T01 | MTR_2g103600 | 41.455 | 275 | 102 | 4 | 44 | 261 | 30 | 302 | 7.04e-63 | 202 |
| MsG0280011034.01.T01 | MTR_2g088290 | 32.114 | 246 | 118 | 8 | 65 | 289 | 1 | 218 | 8.03e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011034.01.T01 | AT2G29050 | 50.794 | 378 | 132 | 4 | 6 | 332 | 15 | 389 | 4.78e-133 | 384 |
| MsG0280011034.01.T01 | AT3G53780 | 49.570 | 349 | 117 | 4 | 35 | 332 | 54 | 394 | 1.41e-110 | 327 |
| MsG0280011034.01.T01 | AT1G63120 | 50.340 | 294 | 87 | 4 | 44 | 284 | 30 | 317 | 8.80e-88 | 266 |
| MsG0280011034.01.T01 | AT5G07250 | 48.171 | 328 | 104 | 5 | 21 | 286 | 22 | 345 | 1.49e-84 | 259 |
| MsG0280011034.01.T01 | AT1G12750 | 43.934 | 305 | 115 | 4 | 33 | 284 | 6 | 307 | 5.44e-82 | 251 |
| MsG0280011034.01.T01 | AT1G12750 | 43.934 | 305 | 115 | 4 | 33 | 284 | 6 | 307 | 5.44e-82 | 251 |
| MsG0280011034.01.T01 | AT1G12750 | 43.934 | 305 | 115 | 4 | 33 | 284 | 6 | 307 | 5.44e-82 | 251 |
| MsG0280011034.01.T01 | AT1G12750 | 43.934 | 305 | 115 | 4 | 33 | 284 | 6 | 307 | 5.44e-82 | 251 |
| MsG0280011034.01.T01 | AT1G12750 | 43.934 | 305 | 115 | 4 | 33 | 284 | 6 | 307 | 5.44e-82 | 251 |
| MsG0280011034.01.T01 | AT3G53780 | 47.464 | 276 | 88 | 3 | 108 | 332 | 1 | 270 | 2.73e-81 | 248 |
| MsG0280011034.01.T01 | AT3G53780 | 47.191 | 267 | 82 | 4 | 35 | 250 | 54 | 312 | 1.08e-71 | 225 |
| MsG0280011034.01.T01 | AT1G77860 | 37.574 | 338 | 155 | 6 | 48 | 331 | 49 | 384 | 6.27e-71 | 225 |
| MsG0280011034.01.T01 | AT5G07250 | 46.503 | 286 | 124 | 6 | 21 | 286 | 22 | 298 | 5.31e-63 | 202 |
| MsG0280011034.01.T01 | AT1G52580 | 40.753 | 292 | 115 | 6 | 24 | 260 | 8 | 296 | 7.21e-60 | 194 |
| MsG0280011034.01.T01 | AT1G77860 | 37.793 | 299 | 130 | 6 | 48 | 292 | 49 | 345 | 6.32e-59 | 193 |
| MsG0280011034.01.T01 | AT4G23070 | 43.299 | 291 | 109 | 4 | 44 | 283 | 28 | 313 | 6.81e-56 | 184 |
| MsG0280011034.01.T01 | AT2G29050 | 55.556 | 153 | 66 | 1 | 6 | 158 | 15 | 165 | 8.79e-55 | 182 |
| MsG0280011034.01.T01 | AT2G29050 | 65.556 | 90 | 30 | 1 | 164 | 253 | 250 | 338 | 8.37e-30 | 117 |
| MsG0280011034.01.T01 | AT1G12750 | 56.349 | 126 | 53 | 1 | 35 | 158 | 8 | 133 | 1.56e-45 | 154 |
| MsG0280011034.01.T01 | AT1G12750 | 56.349 | 126 | 53 | 1 | 35 | 158 | 8 | 133 | 1.65e-45 | 154 |
Find 100 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGGGTCTTGTTGGATTC+TGG | 0.167687 | 2:-78695489 | MsG0280011034.01.T01:five_prime_UTR |
| ATTCGGCTTGAACAAGAATT+TGG | 0.175005 | 2:-78693974 | MsG0280011034.01.T01:CDS |
| TGATTCGTCCTCAGTTTAAA+TGG | 0.238851 | 2:-78693332 | MsG0280011034.01.T01:CDS |
| AATGGAATGGAAGATATATT+TGG | 0.280921 | 2:-78692430 | MsG0280011034.01.T01:three_prime_UTR |
| TCTTTCCTATTACTCATTGC+AGG | 0.286895 | 2:-78693219 | MsG0280011034.01.T01:CDS |
| CTTACCCTGCAATGAGTAAT+AGG | 0.292148 | 2:+78693214 | None:intergenic |
| TTCGCTCATCTAGGAGGATT+TGG | 0.297054 | 2:-78693384 | MsG0280011034.01.T01:CDS |
| GGCGCCTTGTCTCTTGTATA+TGG | 0.304879 | 2:-78694054 | MsG0280011034.01.T01:CDS |
| CTTGAACAAGAATTTGGATT+TGG | 0.310501 | 2:-78693968 | MsG0280011034.01.T01:CDS |
| ATCTGAAATCTTTGTTCAAA+AGG | 0.315789 | 2:-78695335 | MsG0280011034.01.T01:five_prime_UTR |
| CATCTAGGAGGATTTGGTTC+TGG | 0.319719 | 2:-78693378 | MsG0280011034.01.T01:CDS |
| ATTTGGATTTGGTATGGTTC+TGG | 0.321221 | 2:-78693957 | MsG0280011034.01.T01:intron |
| AACAAATTCCTAACTTTGTC+AGG | 0.325137 | 2:-78695506 | MsG0280011034.01.T01:five_prime_UTR |
| TCACTCGTGATCGTGATTTC+AGG | 0.355861 | 2:-78695190 | MsG0280011034.01.T01:CDS |
| TTGTGTATATGATTCATTCT+TGG | 0.360552 | 2:-78692612 | MsG0280011034.01.T01:three_prime_UTR |
| TAACTTTGTCAGGGTCTTGT+TGG | 0.364641 | 2:-78695496 | MsG0280011034.01.T01:five_prime_UTR |
| CTTAAAGAAAACCCTCTCTT+TGG | 0.366436 | 2:-78695014 | MsG0280011034.01.T01:CDS |
| TGGCACCACCGTTGAGGTTA+AGG | 0.367443 | 2:-78695261 | MsG0280011034.01.T01:CDS |
| TTTGGTTCTGGCTTTCTGCT+TGG | 0.373387 | 2:-78693366 | MsG0280011034.01.T01:CDS |
| CTTGTATATGGTTGCATGGT+GGG | 0.379600 | 2:-78694042 | MsG0280011034.01.T01:CDS |
| AGCCAACAACAGTCTAAATC+TGG | 0.385356 | 2:-78693306 | MsG0280011034.01.T01:CDS |
| ACCTTATCAATATGTGTTGT+GGG | 0.394616 | 2:-78693247 | MsG0280011034.01.T01:CDS |
| ATCCAGATTTAGACTGTTGT+TGG | 0.400472 | 2:+78693304 | None:intergenic |
| AACAAGACCCTGACAAAGTT+AGG | 0.404982 | 2:+78695498 | None:intergenic |
| GTTGTGTTCCTACCTCAAAA+TGG | 0.409054 | 2:-78692971 | MsG0280011034.01.T01:CDS |
| TCTATGCAGACAACGGAATT+CGG | 0.409614 | 2:-78692792 | MsG0280011034.01.T01:intron |
| GAAATGGGTTTGAATCAGTT+AGG | 0.421296 | 2:+78695421 | None:intergenic |
| GTTGTAATAAATTTAGCTGT+TGG | 0.441288 | 2:-78693429 | MsG0280011034.01.T01:CDS |
| TTGTTCTCAGTCGGCAATGA+TGG | 0.441972 | 2:-78692572 | MsG0280011034.01.T01:three_prime_UTR |
| TCTGAAATCTTTGTTCAAAA+GGG | 0.452645 | 2:-78695334 | MsG0280011034.01.T01:five_prime_UTR |
| GGGTCTTGTTGGATTCTGGC+TGG | 0.453364 | 2:-78695485 | MsG0280011034.01.T01:five_prime_UTR |
| TGTCCTGAGAATGCATTTCA+TGG | 0.455723 | 2:-78695080 | MsG0280011034.01.T01:CDS |
| TACCTTATCAATATGTGTTG+TGG | 0.455869 | 2:-78693248 | MsG0280011034.01.T01:CDS |
| AGTAATAAACTTATGATGGC+TGG | 0.458120 | 2:+78692537 | None:intergenic |
| TTTCAGGCTCTTTAAGCAAT+GGG | 0.470163 | 2:-78695174 | MsG0280011034.01.T01:CDS |
| GTTGACAATTTCGCTCATCT+AGG | 0.472592 | 2:-78693393 | MsG0280011034.01.T01:CDS |
| ACACATGCAAAATTTCTTGA+AGG | 0.474975 | 2:-78692651 | MsG0280011034.01.T01:three_prime_UTR |
| GTCTCTTGTATATGGTTGCA+TGG | 0.482616 | 2:-78694046 | MsG0280011034.01.T01:CDS |
| TAATAGTAATAAACTTATGA+TGG | 0.486847 | 2:+78692533 | None:intergenic |
| ACAAGAATTTGGATTTGGTA+TGG | 0.490017 | 2:-78693963 | MsG0280011034.01.T01:CDS |
| AAGGAGAATCTTCCAAGAAA+AGG | 0.495328 | 2:+78695044 | None:intergenic |
| TCTTTAAGCAATGGGTTCCA+TGG | 0.504864 | 2:-78695166 | MsG0280011034.01.T01:CDS |
| ACCCACAACACATATTGATA+AGG | 0.507027 | 2:+78693246 | None:intergenic |
| TACCTCAAAATGGAGTTGTC+AGG | 0.507679 | 2:-78692961 | MsG0280011034.01.T01:CDS |
| GGGATGGTTCTACTCTTTCG+AGG | 0.511587 | 2:-78693035 | MsG0280011034.01.T01:CDS |
| ATTTCAGGCTCTTTAAGCAA+TGG | 0.516293 | 2:-78695175 | MsG0280011034.01.T01:CDS |
| ACGTTGGCAAACACAAAAGT+TGG | 0.526318 | 2:+78695137 | None:intergenic |
| CTTTGTTCGCAACTTTGCCA+TGG | 0.528366 | 2:-78692684 | MsG0280011034.01.T01:CDS |
| TTCAAAATCATCTATAATCA+CGG | 0.533216 | 2:-78695401 | MsG0280011034.01.T01:five_prime_UTR |
| CTTTCCTATTACTCATTGCA+GGG | 0.535119 | 2:-78693218 | MsG0280011034.01.T01:intron |
| GTACCATGAAATGCATTCTC+AGG | 0.536653 | 2:+78695077 | None:intergenic |
| TCAACATGTTGGCAAGTACA+TGG | 0.537008 | 2:+78694014 | None:intergenic |
| AAATCACGATCACGAGTGAC+GGG | 0.541550 | 2:+78695194 | None:intergenic |
| TGACAGATTCATTACTGGGA+TGG | 0.543513 | 2:-78693051 | MsG0280011034.01.T01:intron |
| TAAACTGAGGACGAATCAAA+AGG | 0.544513 | 2:+78693337 | None:intergenic |
| TGCTCTAGAAGTAGATAAAG+TGG | 0.545530 | 2:-78694095 | MsG0280011034.01.T01:CDS |
| AGAAATTCGTTGTTCTCAGT+CGG | 0.545619 | 2:-78692581 | MsG0280011034.01.T01:three_prime_UTR |
| CACATGCAAAATTTCTTGAA+GGG | 0.545781 | 2:-78692650 | MsG0280011034.01.T01:three_prime_UTR |
| AAAACTCACGTAAAGGAAGA+AGG | 0.547703 | 2:+78694990 | None:intergenic |
| GACAATTTCGCTCATCTAGG+AGG | 0.549429 | 2:-78693390 | MsG0280011034.01.T01:CDS |
| AAGAGAGCAAAGGAATGGAA+TGG | 0.554489 | 2:-78692443 | MsG0280011034.01.T01:three_prime_UTR |
| ACAAAAGTTGGAACAAGCCA+TGG | 0.556908 | 2:+78695149 | None:intergenic |
| GAAATCACGATCACGAGTGA+CGG | 0.572889 | 2:+78695193 | None:intergenic |
| ACGACGAAGACGGAGACCCA+CGG | 0.573842 | 2:+78695228 | None:intergenic |
| ATCAAAAGAGAGCAAAGGAA+TGG | 0.574326 | 2:-78692448 | MsG0280011034.01.T01:three_prime_UTR |
| TCAACGGTGGTGCCACCATG+TGG | 0.575383 | 2:+78695269 | None:intergenic |
| CATGTGTATCTATCTATCCA+TGG | 0.577916 | 2:+78692667 | None:intergenic |
| AAATCATAATCATGAGTGGA+GGG | 0.582372 | 2:-78695298 | MsG0280011034.01.T01:exon |
| TTGTATATGGTTGCATGGTG+GGG | 0.585338 | 2:-78694041 | MsG0280011034.01.T01:CDS |
| AGGAAGAAGGACCAAAGAGA+GGG | 0.589526 | 2:+78695003 | None:intergenic |
| AAACAATTCTCCACAGACAA+AGG | 0.590975 | 2:-78695455 | MsG0280011034.01.T01:five_prime_UTR |
| ACAAATTCCTAACTTTGTCA+GGG | 0.594817 | 2:-78695505 | MsG0280011034.01.T01:five_prime_UTR |
| TGGTTCATGAACACGAAGGT+TGG | 0.597343 | 2:-78694075 | MsG0280011034.01.T01:CDS |
| AACAATGAAAATAATAACGT+TGG | 0.597447 | 2:+78695121 | None:intergenic |
| GGAACAAAGCATTTATTGTG+AGG | 0.597670 | 2:-78692940 | MsG0280011034.01.T01:intron |
| TTAAGGTTCATCCTCGCCGT+GGG | 0.597978 | 2:-78695244 | MsG0280011034.01.T01:CDS |
| TCTTGTATATGGTTGCATGG+TGG | 0.604832 | 2:-78694043 | MsG0280011034.01.T01:CDS |
| GTTAAGGTTCATCCTCGCCG+TGG | 0.606777 | 2:-78695245 | MsG0280011034.01.T01:CDS |
| CGAAATTGTCAACATGTGGA+AGG | 0.611940 | 2:+78693403 | None:intergenic |
| TGAGCGAAATTGTCAACATG+TGG | 0.615330 | 2:+78693399 | None:intergenic |
| GGATTCGACGACGACGAAGA+CGG | 0.615599 | 2:+78695218 | None:intergenic |
| CAACGGTGGTGCCACCATGT+GGG | 0.618108 | 2:+78695270 | None:intergenic |
| AACATCACATGCATGAGCAA+TGG | 0.619993 | 2:-78692759 | MsG0280011034.01.T01:CDS |
| ACATGGTGGCACCACCGTTG+AGG | 0.621441 | 2:-78695267 | MsG0280011034.01.T01:CDS |
| AAGGAAGAAGGACCAAAGAG+AGG | 0.633246 | 2:+78695002 | None:intergenic |
| TGGCTTATCCATTTAAACTG+AGG | 0.633333 | 2:+78693324 | None:intergenic |
| AAAATCATAATCATGAGTGG+AGG | 0.633390 | 2:-78695299 | MsG0280011034.01.T01:exon |
| CTATTATCAAAAGAGAGCAA+AGG | 0.634615 | 2:-78692453 | MsG0280011034.01.T01:three_prime_UTR |
| TCACGATCACGAGTGACGGG+AGG | 0.634822 | 2:+78695197 | None:intergenic |
| ACTTGAATGAACGTTGCTCG+TGG | 0.663668 | 2:-78693007 | MsG0280011034.01.T01:CDS |
| AGGATGAACCTTAACCTCAA+CGG | 0.671763 | 2:+78695253 | None:intergenic |
| TCATAATCATGAGTGGAGGG+AGG | 0.674267 | 2:-78695295 | MsG0280011034.01.T01:exon |
| GAAGACGGAGACCCACGGCG+AGG | 0.680052 | 2:+78695233 | None:intergenic |
| GAAGAGCTAGTATTCGACAG+AGG | 0.682346 | 2:+78692720 | None:intergenic |
| AGTGGAGGGAGGAACCCACA+TGG | 0.690830 | 2:-78695284 | MsG0280011034.01.T01:CDS |
| GCAACCATATACAAGAGACA+AGG | 0.709780 | 2:+78694050 | None:intergenic |
| AAAATCATCTATAATCACGG+AGG | 0.711965 | 2:-78695398 | MsG0280011034.01.T01:five_prime_UTR |
| ATGAACCTTAACCTCAACGG+TGG | 0.726735 | 2:+78695256 | None:intergenic |
| GGAGGGAGGAACCCACATGG+TGG | 0.736064 | 2:-78695281 | MsG0280011034.01.T01:CDS |
| AAAGTGGTTCATGAACACGA+AGG | 0.793505 | 2:-78694079 | MsG0280011034.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTATGATTTTTTTTTTT+TGG | + | Chr2:78692672-78692691 | None:intergenic | 10.0% |
| !! | AAAGACAATAATTATTTATC+AGG | + | Chr2:78694442-78694461 | None:intergenic | 15.0% |
| !! | AATGATATAAATACAGATAA+TGG | + | Chr2:78694103-78694122 | None:intergenic | 15.0% |
| !! | ATAAATAATTATTGTCTTTG+CGG | - | Chr2:78694443-78694462 | MsG0280011034.01.T01:intron | 15.0% |
| !! | ATATTACCTTTAATATTCTT+AGG | - | Chr2:78694815-78694834 | MsG0280011034.01.T01:intron | 15.0% |
| !! | TAATAGTAATAAACTTATGA+TGG | + | Chr2:78695448-78695467 | None:intergenic | 15.0% |
| !!! | ATTATAGATGATTTTGAAAT+GGG | + | Chr2:78692575-78692594 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTTTTATCTAAAT+TGG | - | Chr2:78695149-78695168 | MsG0280011034.01.T01:CDS | 15.0% |
| !! | AAAAAAATCATAATCATGAG+TGG | - | Chr2:78692676-78692695 | MsG0280011034.01.T01:exon | 20.0% |
| !! | AACAATGAAAATAATAACGT+TGG | + | Chr2:78692860-78692879 | None:intergenic | 20.0% |
| !! | ATGAACATGTGTTTATAAAT+GGG | - | Chr2:78693437-78693456 | MsG0280011034.01.T01:CDS | 20.0% |
| !! | TACATTAATCAAGTTATGAT+TGG | - | Chr2:78693094-78693113 | MsG0280011034.01.T01:intron | 20.0% |
| !! | TTCAAAATCATCTATAATCA+CGG | - | Chr2:78692577-78692596 | MsG0280011034.01.T01:three_prime_UTR | 20.0% |
| !!! | GATTATAGATGATTTTGAAA+TGG | + | Chr2:78692576-78692595 | None:intergenic | 20.0% |
| !!! | GTAAGTATTTAATCTAAAGT+TGG | - | Chr2:78694897-78694916 | MsG0280011034.01.T01:intron | 20.0% |
| !!! | TTGTTTTTACATAAATGTTC+TGG | - | Chr2:78694121-78694140 | MsG0280011034.01.T01:intron | 20.0% |
| ! | AATGGAATGGAAGATATATT+TGG | - | Chr2:78695548-78695567 | MsG0280011034.01.T01:five_prime_UTR | 25.0% |
| ! | AGCTATTGCAAATACATAAT+TGG | + | Chr2:78693757-78693776 | None:intergenic | 25.0% |
| ! | CAAAATGGAAAGAAATAGAA+TGG | + | Chr2:78694481-78694500 | None:intergenic | 25.0% |
| ! | CATGAACATGTGTTTATAAA+TGG | - | Chr2:78693436-78693455 | MsG0280011034.01.T01:CDS | 25.0% |
| ! | GAACTAGAAAATAGAATTGA+TGG | + | Chr2:78695089-78695108 | None:intergenic | 25.0% |
| ! | GTTGTAATAAATTTAGCTGT+TGG | - | Chr2:78694549-78694568 | MsG0280011034.01.T01:intron | 25.0% |
| ! | TATCTGCCTAAAATTAAGAT+TGG | + | Chr2:78693791-78693810 | None:intergenic | 25.0% |
| ! | TATGTATTTGCAATAGCTAA+TGG | - | Chr2:78693759-78693778 | MsG0280011034.01.T01:intron | 25.0% |
| ! | TGAACATGTGTTTATAAATG+GGG | - | Chr2:78693438-78693457 | MsG0280011034.01.T01:CDS | 25.0% |
| ! | TTAATCAAGTTATGATTGGT+TGG | - | Chr2:78693098-78693117 | MsG0280011034.01.T01:intron | 25.0% |
| ! | TTCATAGATTACATTCTCTA+TGG | - | Chr2:78693678-78693697 | MsG0280011034.01.T01:intron | 25.0% |
| ! | TTGTGTATATGATTCATTCT+TGG | - | Chr2:78695366-78695385 | MsG0280011034.01.T01:five_prime_UTR | 25.0% |
| !! | ACAGTACCAATCTTAATTTT+AGG | - | Chr2:78693782-78693801 | MsG0280011034.01.T01:intron | 25.0% |
| !! | ATCTGAAATCTTTGTTCAAA+AGG | - | Chr2:78692643-78692662 | MsG0280011034.01.T01:three_prime_UTR | 25.0% |
| !! | ATGTTGAGTCTTCTTTTTAT+TGG | - | Chr2:78693980-78693999 | MsG0280011034.01.T01:CDS | 25.0% |
| !! | GTCTTCTTTTTATTGGAATT+CGG | - | Chr2:78693987-78694006 | MsG0280011034.01.T01:CDS | 25.0% |
| !! | TCTGAAATCTTTGTTCAAAA+GGG | - | Chr2:78692644-78692663 | MsG0280011034.01.T01:three_prime_UTR | 25.0% |
| !!! | AATTTTGACAGATTCATTAC+TGG | - | Chr2:78694922-78694941 | MsG0280011034.01.T01:intron | 25.0% |
| !!! | ATTTTGACAGATTCATTACT+GGG | - | Chr2:78694923-78694942 | MsG0280011034.01.T01:intron | 25.0% |
| !!! | ATTTTTTTTTCCTTTGTCTG+TGG | + | Chr2:78692536-78692555 | None:intergenic | 25.0% |
| !!! | TTTTAGTTCATTCACCTTAT+TGG | + | Chr2:78694396-78694415 | None:intergenic | 25.0% |
| AAAAACCTAATAGATGTGTG+AGG | - | Chr2:78693619-78693638 | MsG0280011034.01.T01:intron | 30.0% | |
| AAAAAGAAGACTCAACATGT+TGG | + | Chr2:78693978-78693997 | None:intergenic | 30.0% | |
| AAAACCTAATAGATGTGTGA+GGG | - | Chr2:78693620-78693639 | MsG0280011034.01.T01:intron | 30.0% | |
| AAAATCATAATCATGAGTGG+AGG | - | Chr2:78692679-78692698 | MsG0280011034.01.T01:exon | 30.0% | |
| AAAATCATCTATAATCACGG+AGG | - | Chr2:78692580-78692599 | MsG0280011034.01.T01:three_prime_UTR | 30.0% | |
| AAATCATAATCATGAGTGGA+GGG | - | Chr2:78692680-78692699 | MsG0280011034.01.T01:CDS | 30.0% | |
| AACAAAAACGTGTGTTTGTA+AGG | - | Chr2:78693578-78693597 | MsG0280011034.01.T01:intron | 30.0% | |
| AACAAATTCCTAACTTTGTC+AGG | - | Chr2:78692472-78692491 | MsG0280011034.01.T01:three_prime_UTR | 30.0% | |
| AACATGTGTTTATAAATGGG+GGG | - | Chr2:78693440-78693459 | MsG0280011034.01.T01:CDS | 30.0% | |
| ACAAATTCCTAACTTTGTCA+GGG | - | Chr2:78692473-78692492 | MsG0280011034.01.T01:three_prime_UTR | 30.0% | |
| ACAATATTCTATGCAGACAA+CGG | - | Chr2:78695179-78695198 | MsG0280011034.01.T01:CDS | 30.0% | |
| ACACATGCAAAATTTCTTGA+AGG | - | Chr2:78695327-78695346 | MsG0280011034.01.T01:five_prime_UTR | 30.0% | |
| ACCTTATCAATATGTGTTGT+GGG | - | Chr2:78694731-78694750 | MsG0280011034.01.T01:intron | 30.0% | |
| AGTAATAAACTTATGATGGC+TGG | + | Chr2:78695444-78695463 | None:intergenic | 30.0% | |
| ATAATATTTACTCCTTCGTC+CGG | + | Chr2:78693525-78693544 | None:intergenic | 30.0% | |
| CAAAACATCATGAGACAAAA+TGG | + | Chr2:78694496-78694515 | None:intergenic | 30.0% | |
| CACATGCAAAATTTCTTGAA+GGG | - | Chr2:78695328-78695347 | MsG0280011034.01.T01:five_prime_UTR | 30.0% | |
| CCAAGTCCTAAGAATATTAA+AGG | + | Chr2:78694824-78694843 | None:intergenic | 30.0% | |
| CCTTTAATATTCTTAGGACT+TGG | - | Chr2:78694821-78694840 | MsG0280011034.01.T01:intron | 30.0% | |
| CTATTATCAAAAGAGAGCAA+AGG | - | Chr2:78695525-78695544 | MsG0280011034.01.T01:five_prime_UTR | 30.0% | |
| CTTGAACAAGAATTTGGATT+TGG | - | Chr2:78694010-78694029 | MsG0280011034.01.T01:CDS | 30.0% | |
| GAAAAAGAAAACTCACGTAA+AGG | + | Chr2:78692998-78693017 | None:intergenic | 30.0% | |
| GAACATGTGTTTATAAATGG+GGG | - | Chr2:78693439-78693458 | MsG0280011034.01.T01:CDS | 30.0% | |
| GAATGTAATCTATGAATCAC+CGG | + | Chr2:78693674-78693693 | None:intergenic | 30.0% | |
| GGAAAGAAATAGAATGGTTT+AGG | + | Chr2:78694475-78694494 | None:intergenic | 30.0% | |
| TACCTTATCAATATGTGTTG+TGG | - | Chr2:78694730-78694749 | MsG0280011034.01.T01:intron | 30.0% | |
| TGAGAATGAGTTTATTAGTG+TGG | - | Chr2:78693219-78693238 | MsG0280011034.01.T01:CDS | 30.0% | |
| ! | ACAAGAATTTGGATTTGGTA+TGG | - | Chr2:78694015-78694034 | MsG0280011034.01.T01:CDS | 30.0% |
| ! | ACACTTTAGATGTCTAAGAT+TGG | - | Chr2:78693372-78693391 | MsG0280011034.01.T01:CDS | 30.0% |
| ! | ACTTTAGATGTCTAAGATTG+GGG | - | Chr2:78693374-78693393 | MsG0280011034.01.T01:CDS | 30.0% |
| ! | ATTTTCAGATTACAGGAGAT+GGG | - | Chr2:78693860-78693879 | MsG0280011034.01.T01:intron | 30.0% |
| ! | CACTTTAGATGTCTAAGATT+GGG | - | Chr2:78693373-78693392 | MsG0280011034.01.T01:CDS | 30.0% |
| ! | GTTTTCTTTAAGTGGTTGAA+AGG | + | Chr2:78692956-78692975 | None:intergenic | 30.0% |
| ! | TCTCTATGTGATATCTGTTT+TGG | - | Chr2:78694251-78694270 | MsG0280011034.01.T01:intron | 30.0% |
| ! | TTTTAGGCAGATATATCTCT+TGG | - | Chr2:78693798-78693817 | MsG0280011034.01.T01:intron | 30.0% |
| !! | AGTTAAATTGATTCGAGCTA+AGG | - | Chr2:78693469-78693488 | MsG0280011034.01.T01:intron | 30.0% |
| !! | GTTAAATTGATTCGAGCTAA+GGG | - | Chr2:78693470-78693489 | MsG0280011034.01.T01:intron | 30.0% |
| !! | TACAGATAATGGAATACTGT+TGG | + | Chr2:78694092-78694111 | None:intergenic | 30.0% |
| !! | TATGTGATATCTGTTTTGGA+GGG | - | Chr2:78694255-78694274 | MsG0280011034.01.T01:intron | 30.0% |
| AAAACTCACGTAAAGGAAGA+AGG | + | Chr2:78692991-78693010 | None:intergenic | 35.0% | |
| AAACAATTCTCCACAGACAA+AGG | - | Chr2:78692523-78692542 | MsG0280011034.01.T01:three_prime_UTR | 35.0% | |
| AAGGAGAATCTTCCAAGAAA+AGG | + | Chr2:78692937-78692956 | None:intergenic | 35.0% | |
| AATCCAATTCTAACTGCGAA+AGG | + | Chr2:78694231-78694250 | None:intergenic | 35.0% | |
| ACCCACAACACATATTGATA+AGG | + | Chr2:78694735-78694754 | None:intergenic | 35.0% | |
| AGAAATTCGTTGTTCTCAGT+CGG | - | Chr2:78695397-78695416 | MsG0280011034.01.T01:five_prime_UTR | 35.0% | |
| ATCAAAAGAGAGCAAAGGAA+TGG | - | Chr2:78695530-78695549 | MsG0280011034.01.T01:five_prime_UTR | 35.0% | |
| ATCCAGATTTAGACTGTTGT+TGG | + | Chr2:78694677-78694696 | None:intergenic | 35.0% | |
| ATTTCAGGCTCTTTAAGCAA+TGG | - | Chr2:78692803-78692822 | MsG0280011034.01.T01:intron | 35.0% | |
| CATGTGTATCTATCTATCCA+TGG | + | Chr2:78695314-78695333 | None:intergenic | 35.0% | |
| CGATATACTTGAACAATGCA+AGG | + | Chr2:78694054-78694073 | None:intergenic | 35.0% | |
| CTTAAAGAAAACCCTCTCTT+TGG | - | Chr2:78692964-78692983 | MsG0280011034.01.T01:CDS | 35.0% | |
| CTTTCCTATTACTCATTGCA+GGG | - | Chr2:78694760-78694779 | MsG0280011034.01.T01:intron | 35.0% | |
| GTCTGCGTTATTCATACAAA+CGG | - | Chr2:78694286-78694305 | MsG0280011034.01.T01:intron | 35.0% | |
| TAAACTGAGGACGAATCAAA+AGG | + | Chr2:78694644-78694663 | None:intergenic | 35.0% | |
| TAATATTTACTCCTTCGTCC+GGG | + | Chr2:78693524-78693543 | None:intergenic | 35.0% | |
| TCTCAGAGCTCTTCATTAAT+TGG | - | Chr2:78694360-78694379 | MsG0280011034.01.T01:intron | 35.0% | |
| TCTGCGTTATTCATACAAAC+GGG | - | Chr2:78694287-78694306 | MsG0280011034.01.T01:intron | 35.0% | |
| TCTTTCCTATTACTCATTGC+AGG | - | Chr2:78694759-78694778 | MsG0280011034.01.T01:intron | 35.0% | |
| TGATTCGTCCTCAGTTTAAA+TGG | - | Chr2:78694646-78694665 | MsG0280011034.01.T01:intron | 35.0% | |
| TGGCTTATCCATTTAAACTG+AGG | + | Chr2:78694657-78694676 | None:intergenic | 35.0% | |
| TTGGACGATATATGCCAATA+AGG | - | Chr2:78694379-78694398 | MsG0280011034.01.T01:intron | 35.0% | |
| TTTCAGGCTCTTTAAGCAAT+GGG | - | Chr2:78692804-78692823 | MsG0280011034.01.T01:intron | 35.0% | |
| ! | AAGAGAGGGTTTTCTTTAAG+TGG | + | Chr2:78692964-78692983 | None:intergenic | 35.0% |
| ! | ATTCGGCTTGAACAAGAATT+TGG | - | Chr2:78694004-78694023 | MsG0280011034.01.T01:CDS | 35.0% |
| ! | ATTTGGATTTGGTATGGTTC+TGG | - | Chr2:78694021-78694040 | MsG0280011034.01.T01:CDS | 35.0% |
| ! | CATTTTCAGATTACAGGAGA+TGG | - | Chr2:78693859-78693878 | MsG0280011034.01.T01:intron | 35.0% |
| ! | CTTTAGATGTCTAAGATTGG+GGG | - | Chr2:78693375-78693394 | MsG0280011034.01.T01:CDS | 35.0% |
| ! | GAAATGGGTTTGAATCAGTT+AGG | + | Chr2:78692560-78692579 | None:intergenic | 35.0% |
| ! | GGAACAAAGCATTTATTGTG+AGG | - | Chr2:78695038-78695057 | MsG0280011034.01.T01:CDS | 35.0% |
| ! | TACTCGCATTTTCAGATTAC+AGG | - | Chr2:78693853-78693872 | MsG0280011034.01.T01:intron | 35.0% |
| !! | CTATGTGATATCTGTTTTGG+AGG | - | Chr2:78694254-78694273 | MsG0280011034.01.T01:intron | 35.0% |
| !! | TGCTCTAGAAGTAGATAAAG+TGG | - | Chr2:78693883-78693902 | MsG0280011034.01.T01:intron | 35.0% |
| AAAGTGGTTCATGAACACGA+AGG | - | Chr2:78693899-78693918 | MsG0280011034.01.T01:intron | 40.0% | |
| AACAAGACCCTGACAAAGTT+AGG | + | Chr2:78692483-78692502 | None:intergenic | 40.0% | |
| AACATCACATGCATGAGCAA+TGG | - | Chr2:78695219-78695238 | MsG0280011034.01.T01:CDS | 40.0% | |
| AAGAGAGCAAAGGAATGGAA+TGG | - | Chr2:78695535-78695554 | MsG0280011034.01.T01:five_prime_UTR | 40.0% | |
| ACAAAAGTTGGAACAAGCCA+TGG | + | Chr2:78692832-78692851 | None:intergenic | 40.0% | |
| ACAACCCTCACACATCTATT+AGG | + | Chr2:78693627-78693646 | None:intergenic | 40.0% | |
| ACGTTGGCAAACACAAAAGT+TGG | + | Chr2:78692844-78692863 | None:intergenic | 40.0% | |
| AGCCAACAACAGTCTAAATC+TGG | - | Chr2:78694672-78694691 | MsG0280011034.01.T01:intron | 40.0% | |
| AGGATGAACCTTAACCTCAA+CGG | + | Chr2:78692728-78692747 | None:intergenic | 40.0% | |
| CGAAATTGTCAACATGTGGA+AGG | + | Chr2:78694578-78694597 | None:intergenic | 40.0% | |
| CTTACCCTGCAATGAGTAAT+AGG | + | Chr2:78694767-78694786 | None:intergenic | 40.0% | |
| CTTGTATATGGTTGCATGGT+GGG | - | Chr2:78693936-78693955 | MsG0280011034.01.T01:intron | 40.0% | |
| GCAACCATATACAAGAGACA+AGG | + | Chr2:78693931-78693950 | None:intergenic | 40.0% | |
| GCCTAACTCATTCACAAAAC+TGG | + | Chr2:78693264-78693283 | None:intergenic | 40.0% | |
| GTACCATGAAATGCATTCTC+AGG | + | Chr2:78692904-78692923 | None:intergenic | 40.0% | |
| GTCTCTTGTATATGGTTGCA+TGG | - | Chr2:78693932-78693951 | MsG0280011034.01.T01:intron | 40.0% | |
| GTGTGTTTGTAAGGATGCAT+AGG | - | Chr2:78693587-78693606 | MsG0280011034.01.T01:intron | 40.0% | |
| GTGTTTATAAATGGGGGGTT+GGG | - | Chr2:78693445-78693464 | MsG0280011034.01.T01:CDS | 40.0% | |
| GTTGACAATTTCGCTCATCT+AGG | - | Chr2:78694585-78694604 | MsG0280011034.01.T01:intron | 40.0% | |
| GTTGTGTTCCTACCTCAAAA+TGG | - | Chr2:78695007-78695026 | MsG0280011034.01.T01:CDS | 40.0% | |
| TAACTGCGAAAGGACAAGAA+AGG | + | Chr2:78694221-78694240 | None:intergenic | 40.0% | |
| TACCTCAAAATGGAGTTGTC+AGG | - | Chr2:78695017-78695036 | MsG0280011034.01.T01:CDS | 40.0% | |
| TCAACATGTTGGCAAGTACA+TGG | + | Chr2:78693967-78693986 | None:intergenic | 40.0% | |
| TCTATGCAGACAACGGAATT+CGG | - | Chr2:78695186-78695205 | MsG0280011034.01.T01:CDS | 40.0% | |
| TCTTGTATATGGTTGCATGG+TGG | - | Chr2:78693935-78693954 | MsG0280011034.01.T01:intron | 40.0% | |
| TGACAGATTCATTACTGGGA+TGG | - | Chr2:78694927-78694946 | MsG0280011034.01.T01:intron | 40.0% | |
| TGAGCGAAATTGTCAACATG+TGG | + | Chr2:78694582-78694601 | None:intergenic | 40.0% | |
| TGTCCTGAGAATGCATTTCA+TGG | - | Chr2:78692898-78692917 | MsG0280011034.01.T01:intron | 40.0% | |
| TGTCCTTTCGCAGTTAGAAT+TGG | - | Chr2:78694225-78694244 | MsG0280011034.01.T01:intron | 40.0% | |
| TGTGTTTATAAATGGGGGGT+TGG | - | Chr2:78693444-78693463 | MsG0280011034.01.T01:CDS | 40.0% | |
| TTGTATATGGTTGCATGGTG+GGG | - | Chr2:78693937-78693956 | MsG0280011034.01.T01:intron | 40.0% | |
| ! | ATGTCTAAGATTGGGGGTAA+GGG | - | Chr2:78693381-78693400 | MsG0280011034.01.T01:CDS | 40.0% |
| ! | GTCTCATGATGTTTTGCAGA+TGG | - | Chr2:78694500-78694519 | MsG0280011034.01.T01:intron | 40.0% |
| ! | TAACTTTGTCAGGGTCTTGT+TGG | - | Chr2:78692482-78692501 | MsG0280011034.01.T01:three_prime_UTR | 40.0% |
| ! | TCTTTAAGCAATGGGTTCCA+TGG | - | Chr2:78692812-78692831 | MsG0280011034.01.T01:intron | 40.0% |
| ! | TTCCTGACAACTCCATTTTG+AGG | + | Chr2:78695022-78695041 | None:intergenic | 40.0% |
| !! | ACTTGTGTTGCTCCTTTTCT+TGG | - | Chr2:78692922-78692941 | MsG0280011034.01.T01:intron | 40.0% |
| !! | GCCAGTTTTGTGAATGAGTT+AGG | - | Chr2:78693260-78693279 | MsG0280011034.01.T01:CDS | 40.0% |
| !!! | TGACAACTCCATTTTGAGGT+AGG | + | Chr2:78695018-78695037 | None:intergenic | 40.0% |
| AAATCACGATCACGAGTGAC+GGG | + | Chr2:78692787-78692806 | None:intergenic | 45.0% | |
| AAGGAAGAAGGACCAAAGAG+AGG | + | Chr2:78692979-78692998 | None:intergenic | 45.0% | |
| ACTTGAATGAACGTTGCTCG+TGG | - | Chr2:78694971-78694990 | MsG0280011034.01.T01:intron | 45.0% | |
| AGGAAGAAGGACCAAAGAGA+GGG | + | Chr2:78692978-78692997 | None:intergenic | 45.0% | |
| ATACAAACGGGCATCTCAGT+TGG | - | Chr2:78694299-78694318 | MsG0280011034.01.T01:intron | 45.0% | |
| ATGAACCTTAACCTCAACGG+TGG | + | Chr2:78692725-78692744 | None:intergenic | 45.0% | |
| CGAGCTAAGGGATAAGAAGT+TGG | - | Chr2:78693482-78693501 | MsG0280011034.01.T01:intron | 45.0% | |
| CTTTGTTCGCAACTTTGCCA+TGG | - | Chr2:78695294-78695313 | MsG0280011034.01.T01:exon | 45.0% | |
| GAAATCACGATCACGAGTGA+CGG | + | Chr2:78692788-78692807 | None:intergenic | 45.0% | |
| GAAGAGCTAGTATTCGACAG+AGG | + | Chr2:78695261-78695280 | None:intergenic | 45.0% | |
| GACAATTTCGCTCATCTAGG+AGG | - | Chr2:78694588-78694607 | MsG0280011034.01.T01:intron | 45.0% | |
| GCTAAGGGATAAGAAGTTGG+AGG | - | Chr2:78693485-78693504 | MsG0280011034.01.T01:intron | 45.0% | |
| TCACTCGTGATCGTGATTTC+AGG | - | Chr2:78692788-78692807 | MsG0280011034.01.T01:intron | 45.0% | |
| TCATAATCATGAGTGGAGGG+AGG | - | Chr2:78692683-78692702 | MsG0280011034.01.T01:CDS | 45.0% | |
| TCTTGTGTCTGTGTCTCTAC+CGG | - | Chr2:78693652-78693671 | MsG0280011034.01.T01:intron | 45.0% | |
| TGGTTCATGAACACGAAGGT+TGG | - | Chr2:78693903-78693922 | MsG0280011034.01.T01:intron | 45.0% | |
| TTCGCTCATCTAGGAGGATT+TGG | - | Chr2:78694594-78694613 | MsG0280011034.01.T01:intron | 45.0% | |
| TTGTTCTCAGTCGGCAATGA+TGG | - | Chr2:78695406-78695425 | MsG0280011034.01.T01:five_prime_UTR | 45.0% | |
| ! | CATCTAAAGTGTGACTCGTG+TGG | + | Chr2:78693364-78693383 | None:intergenic | 45.0% |
| ! | CATCTAGGAGGATTTGGTTC+TGG | - | Chr2:78694600-78694619 | MsG0280011034.01.T01:intron | 45.0% |
| ! | CATTGTTTGGCTTACTCGGA+GGG | - | Chr2:78694333-78694352 | MsG0280011034.01.T01:intron | 45.0% |
| ! | GATGTCTAAGATTGGGGGTA+AGG | - | Chr2:78693380-78693399 | MsG0280011034.01.T01:CDS | 45.0% |
| ! | GGTGCATTGTTTGGCTTACT+CGG | - | Chr2:78694329-78694348 | MsG0280011034.01.T01:intron | 45.0% |
| !! | GGAGGTTCTAAGTTCAAACC+CGG | - | Chr2:78693503-78693522 | MsG0280011034.01.T01:intron | 45.0% |
| !! | TTTGGTTCTGGCTTTCTGCT+TGG | - | Chr2:78694612-78694631 | MsG0280011034.01.T01:intron | 45.0% |
| CTAAGTTCAAACCCGGACGA+AGG | - | Chr2:78693510-78693529 | MsG0280011034.01.T01:intron | 50.0% | |
| GCTATCTGGCCACCATTATC+AGG | - | Chr2:78693338-78693357 | MsG0280011034.01.T01:CDS | 50.0% | |
| GGCGCCTTGTCTCTTGTATA+TGG | - | Chr2:78693924-78693943 | MsG0280011034.01.T01:intron | 50.0% | |
| GGTGCATCTGGTGCATTGTT+TGG | - | Chr2:78694320-78694339 | MsG0280011034.01.T01:intron | 50.0% | |
| TGACTCGTGTGGCCTGATAA+TGG | + | Chr2:78693353-78693372 | None:intergenic | 50.0% | |
| TTAAGGTTCATCCTCGCCGT+GGG | - | Chr2:78692734-78692753 | MsG0280011034.01.T01:CDS | 50.0% | |
| ! | GATAATGGTGGCCAGATAGC+AGG | + | Chr2:78693338-78693357 | None:intergenic | 50.0% |
| ! | GCATTGTTTGGCTTACTCGG+AGG | - | Chr2:78694332-78694351 | MsG0280011034.01.T01:intron | 50.0% |
| ! | GGGATGGTTCTACTCTTTCG+AGG | - | Chr2:78694943-78694962 | MsG0280011034.01.T01:intron | 50.0% |
| !! | GTCAGGGTCTTGTTGGATTC+TGG | - | Chr2:78692489-78692508 | MsG0280011034.01.T01:three_prime_UTR | 50.0% |
| AATGGTGGCCAGATAGCAGG+CGG | + | Chr2:78693335-78693354 | None:intergenic | 55.0% | |
| CCAGATAGCAGGCGGTTCAA+TGG | + | Chr2:78693327-78693346 | None:intergenic | 55.0% | |
| CCATTGAACCGCCTGCTATC+TGG | - | Chr2:78693324-78693343 | MsG0280011034.01.T01:CDS | 55.0% | |
| GCAGGCGGTTCAATGGATCT+TGG | + | Chr2:78693320-78693339 | None:intergenic | 55.0% | |
| GGATTCGACGACGACGAAGA+CGG | + | Chr2:78692763-78692782 | None:intergenic | 55.0% | |
| GTTAAGGTTCATCCTCGCCG+TGG | - | Chr2:78692733-78692752 | MsG0280011034.01.T01:CDS | 55.0% | |
| TGGCACCACCGTTGAGGTTA+AGG | - | Chr2:78692717-78692736 | MsG0280011034.01.T01:CDS | 55.0% | |
| ! | GGCATCTCAGTTGGTGCATC+TGG | - | Chr2:78694308-78694327 | MsG0280011034.01.T01:intron | 55.0% |
| !! | CTCGTGTGGCCTGATAATGG+TGG | + | Chr2:78693350-78693369 | None:intergenic | 55.0% |
| !! | GGGTCTTGTTGGATTCTGGC+TGG | - | Chr2:78692493-78692512 | MsG0280011034.01.T01:three_prime_UTR | 55.0% |
| ACATGGTGGCACCACCGTTG+AGG | - | Chr2:78692711-78692730 | MsG0280011034.01.T01:CDS | 60.0% | |
| ACGACGAAGACGGAGACCCA+CGG | + | Chr2:78692753-78692772 | None:intergenic | 60.0% | |
| AGTGGAGGGAGGAACCCACA+TGG | - | Chr2:78692694-78692713 | MsG0280011034.01.T01:CDS | 60.0% | |
| ! | TCACGATCACGAGTGACGGG+AGG | + | Chr2:78692784-78692803 | None:intergenic | 60.0% |
| !! | CAACGGTGGTGCCACCATGT+GGG | + | Chr2:78692711-78692730 | None:intergenic | 60.0% |
| !! | TCAACGGTGGTGCCACCATG+TGG | + | Chr2:78692712-78692731 | None:intergenic | 60.0% |
| GGAGGGAGGAACCCACATGG+TGG | - | Chr2:78692697-78692716 | MsG0280011034.01.T01:CDS | 65.0% | |
| GAAGACGGAGACCCACGGCG+AGG | + | Chr2:78692748-78692767 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 78692422 | 78695578 | 78692422 | ID=MsG0280011034.01;Name=MsG0280011034.01 |
| Chr2 | mRNA | 78692422 | 78695578 | 78692422 | ID=MsG0280011034.01.T01;Parent=MsG0280011034.01;Name=MsG0280011034.01.T01;_AED=0.39;_eAED=0.39;_QI=269|0.75|0.8|1|1|1|5|258|333 |
| Chr2 | exon | 78692422 | 78692805 | 78692422 | ID=MsG0280011034.01.T01:exon:21327;Parent=MsG0280011034.01.T01 |
| Chr2 | exon | 78692941 | 78693067 | 78692941 | ID=MsG0280011034.01.T01:exon:21326;Parent=MsG0280011034.01.T01 |
| Chr2 | exon | 78693219 | 78693481 | 78693219 | ID=MsG0280011034.01.T01:exon:21325;Parent=MsG0280011034.01.T01 |
| Chr2 | exon | 78693958 | 78694132 | 78693958 | ID=MsG0280011034.01.T01:exon:21324;Parent=MsG0280011034.01.T01 |
| Chr2 | exon | 78694999 | 78695578 | 78694999 | ID=MsG0280011034.01.T01:exon:21323;Parent=MsG0280011034.01.T01 |
| Chr2 | five_prime_UTR | 78695310 | 78695578 | 78695310 | ID=MsG0280011034.01.T01:five_prime_utr;Parent=MsG0280011034.01.T01 |
| Chr2 | CDS | 78694999 | 78695309 | 78694999 | ID=MsG0280011034.01.T01:cds;Parent=MsG0280011034.01.T01 |
| Chr2 | CDS | 78693958 | 78694132 | 78693958 | ID=MsG0280011034.01.T01:cds;Parent=MsG0280011034.01.T01 |
| Chr2 | CDS | 78693219 | 78693481 | 78693219 | ID=MsG0280011034.01.T01:cds;Parent=MsG0280011034.01.T01 |
| Chr2 | CDS | 78692941 | 78693067 | 78692941 | ID=MsG0280011034.01.T01:cds;Parent=MsG0280011034.01.T01 |
| Chr2 | CDS | 78692680 | 78692805 | 78692680 | ID=MsG0280011034.01.T01:cds;Parent=MsG0280011034.01.T01 |
| Chr2 | three_prime_UTR | 78692422 | 78692679 | 78692422 | ID=MsG0280011034.01.T01:three_prime_utr;Parent=MsG0280011034.01.T01 |
| Gene Sequence |
| Protein sequence |
