Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000307.01.T01 | KEH40022.1 | 97.17 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000307.01.T01 | A0A072VDY9 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048178.01 | MsG0180000307.01 | 0.834446 | 2.984139e-56 | 3.542256e-53 |
| MsG0180000220.01 | MsG0180000307.01 | 0.804311 | 2.296298e-49 | 1.180096e-46 |
| MsG0180000307.01 | MsG0180004425.01 | 0.833459 | 5.267569e-56 | 6.069968e-53 |
| MsG0180000307.01 | MsG0180004462.01 | 0.812655 | 3.801696e-51 | 2.430968e-48 |
| MsG0180000307.01 | MsG0180004464.01 | 0.803449 | 3.467483e-49 | 1.742990e-46 |
| MsG0180000307.01 | MsG0180004797.01 | 0.822530 | 2.255109e-53 | 1.892572e-50 |
| MsG0180000307.01 | MsG0180004871.01 | 0.828423 | 9.065718e-55 | 9.007203e-52 |
| MsG0180000307.01 | MsG0180005172.01 | 0.812534 | 4.040355e-51 | 2.575499e-48 |
| MsG0180000307.01 | MsG0280006462.01 | 0.806552 | 7.781026e-50 | 4.235776e-47 |
| MsG0180000307.01 | MsG0280006583.01 | 0.801664 | 8.094321e-49 | 3.887548e-46 |
| MsG0180000307.01 | MsG0280007120.01 | 0.808628 | 2.820863e-50 | 1.620825e-47 |
| MsG0180000307.01 | MsG0280007537.01 | 0.811746 | 5.999307e-51 | 3.743922e-48 |
| MsG0180000307.01 | MsG0280007691.01 | 0.807843 | 4.145679e-50 | 2.333520e-47 |
| MsG0180000307.01 | MsG0280007818.01 | 0.806707 | 7.216603e-50 | 3.943976e-47 |
| MsG0180000307.01 | MsG0280008032.01 | 0.849678 | 2.772488e-60 | 5.297129e-57 |
| MsG0180000307.01 | MsG0280010469.01 | 0.807578 | 4.721214e-50 | 2.639033e-47 |
| MsG0180000307.01 | MsG0280011131.01 | 0.807937 | 3.960722e-50 | 2.234837e-47 |
| MsG0180000307.01 | MsG0380015614.01 | 0.807790 | 4.254424e-50 | 2.391501e-47 |
| MsG0180000307.01 | MsG0380015931.01 | 0.816935 | 4.277722e-52 | 3.072829e-49 |
| MsG0180000307.01 | MsG0380016753.01 | 0.803763 | 2.985108e-49 | 1.512667e-46 |
| MsG0180000307.01 | MsG0480019289.01 | 0.805990 | 1.022425e-49 | 5.486544e-47 |
| MsG0180000307.01 | MsG0480019335.01 | 0.806007 | 1.013750e-49 | 5.442447e-47 |
| MsG0180000307.01 | MsG0480020964.01 | 0.800073 | 1.710396e-48 | 7.890511e-46 |
| MsG0180000307.01 | MsG0480021204.01 | 0.800516 | 1.389337e-48 | 6.481985e-46 |
| MsG0180000307.01 | MsG0480022016.01 | 0.801809 | 7.556586e-49 | 3.642813e-46 |
| MsG0180000307.01 | MsG0480022169.01 | 0.802425 | 5.643559e-49 | 2.763740e-46 |
| MsG0180000307.01 | MsG0480023937.01 | 0.817835 | 2.683809e-52 | 1.975899e-49 |
| MsG0180000307.01 | MsG0580024196.01 | 0.804335 | 2.270093e-49 | 1.167353e-46 |
| MsG0180000307.01 | MsG0580024856.01 | 0.814866 | 1.238504e-51 | 8.406442e-49 |
| MsG0180000307.01 | MsG0580024996.01 | 0.804579 | 2.018873e-49 | 1.044712e-46 |
| MsG0180000307.01 | MsG0580025907.01 | 0.819544 | 1.098654e-52 | 8.479523e-50 |
| MsG0180000307.01 | MsG0580026596.01 | 0.832637 | 8.437427e-56 | 9.486879e-53 |
| MsG0180000307.01 | MsG0580029639.01 | 0.815961 | 7.070210e-52 | 4.944785e-49 |
| MsG0180000307.01 | MsG0780037630.01 | 0.803453 | 3.461237e-49 | 1.740007e-46 |
| MsG0180000307.01 | MsG0780038092.01 | 0.818609 | 1.792520e-52 | 1.348043e-49 |
| MsG0180000307.01 | MsG0780038742.01 | 0.826779 | 2.249003e-54 | 2.129699e-51 |
| MsG0180000307.01 | MsG0780039249.01 | 0.802901 | 4.501757e-49 | 2.231390e-46 |
| MsG0180000307.01 | MsG0780039863.01 | 0.802942 | 4.416258e-49 | 2.191155e-46 |
| MsG0180000307.01 | MsG0780039900.01 | 0.805817 | 1.111506e-49 | 5.938153e-47 |
| MsG0180000307.01 | MsG0780040679.01 | 0.830878 | 2.291967e-55 | 2.446221e-52 |
| MsG0180000307.01 | MsG0880042049.01 | 0.815603 | 8.495285e-52 | 5.883910e-49 |
| MsG0180000307.01 | MsG0880042743.01 | 0.801051 | 1.080447e-48 | 5.110000e-46 |
| MsG0180000307.01 | MsG0880042965.01 | 0.820494 | 6.658110e-53 | 5.276401e-50 |
| MsG0180000307.01 | MsG0880044732.01 | 0.825088 | 5.672114e-54 | 5.119087e-51 |
| MsG0180000307.01 | MsG0880046244.01 | 0.807520 | 4.856802e-50 | 2.710952e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000307.01.T01 | MTR_1g018550 | 97.170 | 318 | 9 | 0 | 1 | 318 | 1 | 318 | 0.0 | 647 |
| MsG0180000307.01.T01 | MTR_1g018550 | 97.152 | 316 | 9 | 0 | 1 | 316 | 1 | 316 | 0.0 | 644 |
| MsG0180000307.01.T01 | MTR_3g102790 | 60.180 | 334 | 108 | 6 | 1 | 318 | 1 | 325 | 3.36e-129 | 372 |
| MsG0180000307.01.T01 | MTR_3g102790 | 59.940 | 332 | 108 | 6 | 1 | 316 | 1 | 323 | 1.12e-127 | 368 |
| MsG0180000307.01.T01 | MTR_4g128220 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.26e-40 | 144 |
| MsG0180000307.01.T01 | MTR_4g128220 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.37e-40 | 144 |
| MsG0180000307.01.T01 | MTR_4g128220 | 57.971 | 138 | 56 | 2 | 1 | 137 | 3 | 139 | 2.44e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000307.01.T01 | AT1G27700 | 44.304 | 316 | 149 | 4 | 1 | 316 | 1 | 289 | 1.50e-87 | 265 |
| MsG0180000307.01.T01 | AT2G18860 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 3.33e-35 | 129 |
| MsG0180000307.01.T01 | AT4G30240 | 40.090 | 222 | 119 | 6 | 1 | 214 | 3 | 218 | 8.70e-35 | 129 |
| MsG0180000307.01.T01 | AT2G18860 | 50.360 | 139 | 58 | 3 | 1 | 137 | 3 | 132 | 1.02e-34 | 128 |
| MsG0180000307.01.T01 | AT2G18860 | 49.123 | 114 | 47 | 3 | 26 | 137 | 9 | 113 | 3.54e-24 | 99.8 |
Find 86 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATTGATGAAAATT+TGG | 0.141221 | 1:+4224191 | None:intergenic |
| CTTGACGCCATGAATTAAAA+TGG | 0.192881 | 1:+4224156 | None:intergenic |
| GAGCTTGCTTTGTTTCTTTC+GGG | 0.219757 | 1:-4223382 | MsG0180000307.01.T01:CDS |
| CGAGCTTGCTTTGTTTCTTT+CGG | 0.245739 | 1:-4223383 | MsG0180000307.01.T01:CDS |
| AAATCTCTTCTAAGTTCATT+AGG | 0.250806 | 1:+4223734 | None:intergenic |
| CATAAGGTGCCAAGTTTATC+AGG | 0.253350 | 1:-4223154 | MsG0180000307.01.T01:CDS |
| GAGAATGAAGCGGGTATAAT+AGG | 0.277243 | 1:+4224399 | None:intergenic |
| ATCTCAGACATGGGTGGTTT+TGG | 0.291220 | 1:-4223422 | MsG0180000307.01.T01:CDS |
| CTACCCTTGGCACTGCTAAA+TGG | 0.295554 | 1:-4223706 | MsG0180000307.01.T01:CDS |
| GGCACCTTATGCATTGGATT+TGG | 0.302310 | 1:+4223166 | None:intergenic |
| TGCTATGACAAGCATCTCTA+TGG | 0.338103 | 1:-4222830 | MsG0180000307.01.T01:CDS |
| AGTTCCTCCAGCGGTTCTTC+TGG | 0.341641 | 1:-4223190 | MsG0180000307.01.T01:CDS |
| AATCTCTTCTAAGTTCATTA+GGG | 0.345075 | 1:+4223735 | None:intergenic |
| CCAAGTTTATCAGGATTTCT+TGG | 0.347997 | 1:-4223145 | MsG0180000307.01.T01:CDS |
| ATTCAGTTGCATCTGGTGTT+GGG | 0.352535 | 1:-4223315 | MsG0180000307.01.T01:CDS |
| TAATGCTGCCGAAGAAGTTC+AGG | 0.352747 | 1:-4224103 | MsG0180000307.01.T01:CDS |
| TTCCAATGGCTGAATTGAAC+AGG | 0.368336 | 1:-4223027 | MsG0180000307.01.T01:CDS |
| AGGAATTTGAACGCGAAGTT+AGG | 0.368679 | 1:-4223573 | MsG0180000307.01.T01:CDS |
| AAGCGGGTATAATAGGATTA+AGG | 0.371922 | 1:+4224406 | None:intergenic |
| AAGAGTTCTGGTTAGTTTGT+TGG | 0.378142 | 1:+4224372 | None:intergenic |
| GGGTTGTTGCTTTCAGCTGC+CGG | 0.409203 | 1:+4223355 | None:intergenic |
| TTCATTAGGGTTCCACATGC+TGG | 0.412123 | 1:+4223748 | None:intergenic |
| TAGATCCGAAAGAAGAGTTC+TGG | 0.417811 | 1:+4224360 | None:intergenic |
| GTCTGAGATGCCTTTCTACC+TGG | 0.425960 | 1:+4223436 | None:intergenic |
| AAAATTGAATAACATTAAGT+TGG | 0.426618 | 1:+4224291 | None:intergenic |
| ATTGAAACAATTATTCGAAC+AGG | 0.428378 | 1:+4222746 | None:intergenic |
| GCTAGCGCTAGTGCTGATAT+TGG | 0.431805 | 1:-4223253 | MsG0180000307.01.T01:CDS |
| ACTAACCAGAACTCTTCTTT+CGG | 0.435173 | 1:-4224365 | MsG0180000307.01.T01:five_prime_UTR |
| CAGGCCGACTGTATTGCATT+TGG | 0.439081 | 1:+4222765 | None:intergenic |
| TGCAGATTCCTGAACTTCTT+CGG | 0.440150 | 1:+4224095 | None:intergenic |
| AATTCAGTTGCATCTGGTGT+TGG | 0.446579 | 1:-4223316 | MsG0180000307.01.T01:CDS |
| CCTTTGCTTGATTGGTAAGT+CGG | 0.452824 | 1:-4222714 | MsG0180000307.01.T01:CDS |
| AAACTTGGCACCTTATGCAT+TGG | 0.454157 | 1:+4223160 | None:intergenic |
| ATCTGGTGTTGGGGAAGAAA+AGG | 0.470868 | 1:-4223305 | MsG0180000307.01.T01:CDS |
| ATTGAATAACATTAAGTTGG+TGG | 0.479527 | 1:+4224294 | None:intergenic |
| CCAAGAAATCCTGATAAACT+TGG | 0.487329 | 1:+4223145 | None:intergenic |
| AGGTATCACGTGGGCATCGT+AGG | 0.488724 | 1:-4223279 | MsG0180000307.01.T01:CDS |
| GAAGGATGGAATCTACATAT+AGG | 0.489714 | 1:-4223799 | MsG0180000307.01.T01:intron |
| ACCCTGTTCAATTCAGCCAT+TGG | 0.493805 | 1:+4223025 | None:intergenic |
| TTTGTTTCTTTCGGGAATGC+CGG | 0.494226 | 1:-4223374 | MsG0180000307.01.T01:CDS |
| TTGAATAACATTAAGTTGGT+GGG | 0.502002 | 1:+4224295 | None:intergenic |
| AGAGATTTACTTACTACCCT+TGG | 0.502779 | 1:-4223719 | MsG0180000307.01.T01:CDS |
| TGGTCCAAATCCAATGCATA+AGG | 0.505191 | 1:-4223170 | MsG0180000307.01.T01:CDS |
| CAATTTCGAAATTGATTCCA+CGG | 0.510644 | 1:+4223120 | None:intergenic |
| AACGAACCCTCCAGGTAGAA+AGG | 0.511463 | 1:-4223446 | MsG0180000307.01.T01:CDS |
| GTTAAGTTATAACAGAGACT+TGG | 0.526567 | 1:-4223551 | MsG0180000307.01.T01:CDS |
| AAGTTCAGGAATCTGCAGAT+AGG | 0.528981 | 1:-4224089 | MsG0180000307.01.T01:intron |
| TTGACGCCATGAATTAAAAT+GGG | 0.533105 | 1:+4224157 | None:intergenic |
| TAGAAAGGCATCTCAGACAT+GGG | 0.536615 | 1:-4223431 | MsG0180000307.01.T01:CDS |
| GGCGTCAAGTCTTGATCGGT+GGG | 0.538666 | 1:-4224142 | MsG0180000307.01.T01:CDS |
| ATCAGGATTTCTTGGTTCCG+TGG | 0.541306 | 1:-4223137 | MsG0180000307.01.T01:CDS |
| TTCAGTTGCATCTGGTGTTG+GGG | 0.546134 | 1:-4223314 | MsG0180000307.01.T01:CDS |
| TTTCGAAATTGAAGTGGCCG+AGG | 0.547944 | 1:-4223108 | MsG0180000307.01.T01:CDS |
| TTAGATGAAACGAACCCTCC+AGG | 0.548770 | 1:-4223454 | MsG0180000307.01.T01:CDS |
| TGGGCGATGATGCAAGAACT+AGG | 0.548917 | 1:-4223531 | MsG0180000307.01.T01:CDS |
| AAATTGAAGTGGCCGAGGAA+TGG | 0.551739 | 1:-4223103 | MsG0180000307.01.T01:CDS |
| CCTTGGCACTGCTAAATGGC+AGG | 0.552190 | 1:-4223702 | MsG0180000307.01.T01:intron |
| TTAAGTTATAACAGAGACTT+GGG | 0.559421 | 1:-4223550 | MsG0180000307.01.T01:CDS |
| ATTTGGACCAGAAGAACCGC+TGG | 0.562407 | 1:+4223183 | None:intergenic |
| GAGATGCCTTTCTACCTGGA+GGG | 0.562553 | 1:+4223440 | None:intergenic |
| GGTATCACGTGGGCATCGTA+GGG | 0.569652 | 1:-4223278 | MsG0180000307.01.T01:CDS |
| CTGCCATTTAGCAGTGCCAA+GGG | 0.578353 | 1:+4223703 | None:intergenic |
| TGAGATGCCTTTCTACCTGG+AGG | 0.581106 | 1:+4223439 | None:intergenic |
| GTAGAAAGGCATCTCAGACA+TGG | 0.584968 | 1:-4223432 | MsG0180000307.01.T01:CDS |
| CCTGCCATTTAGCAGTGCCA+AGG | 0.595735 | 1:+4223702 | None:intergenic |
| AATCAATTTCGAAATTGAAG+TGG | 0.596466 | 1:-4223114 | MsG0180000307.01.T01:CDS |
| TGGCGTCAAGTCTTGATCGG+TGG | 0.597897 | 1:-4224143 | MsG0180000307.01.T01:CDS |
| TCATGGCGTCAAGTCTTGAT+CGG | 0.599437 | 1:-4224146 | MsG0180000307.01.T01:CDS |
| TGGTGTTGGGGAAGAAAAGG+AGG | 0.605467 | 1:-4223302 | MsG0180000307.01.T01:CDS |
| GATCATCATAAAGAAACTGA+TGG | 0.606309 | 1:-4223058 | MsG0180000307.01.T01:CDS |
| TGGAATCTACATATAGGACA+TGG | 0.629104 | 1:-4223793 | MsG0180000307.01.T01:CDS |
| ATGACAAGCATCTCTATGGA+TGG | 0.634464 | 1:-4222826 | MsG0180000307.01.T01:CDS |
| TGATGGTGCACTAATTCCAA+TGG | 0.646457 | 1:-4223041 | MsG0180000307.01.T01:CDS |
| AAGCATCTCTATGGATGGTG+TGG | 0.646497 | 1:-4222821 | MsG0180000307.01.T01:CDS |
| CCGACTTACCAATCAAGCAA+AGG | 0.648466 | 1:+4222714 | None:intergenic |
| TGTTGGGGAAGAAAAGGAGG+AGG | 0.649476 | 1:-4223299 | MsG0180000307.01.T01:CDS |
| AATACCAAATGCAATACAGT+CGG | 0.650211 | 1:-4222769 | MsG0180000307.01.T01:CDS |
| TCCAATGGCTGAATTGAACA+GGG | 0.653838 | 1:-4223026 | MsG0180000307.01.T01:intron |
| AGCATTCATCAGAACTATCG+AGG | 0.656054 | 1:+4222849 | None:intergenic |
| CAGCAGTCTAGTTCCTCCAG+CGG | 0.660392 | 1:-4223199 | MsG0180000307.01.T01:CDS |
| GAAAAGGAGGAGGTATCACG+TGG | 0.667131 | 1:-4223289 | MsG0180000307.01.T01:CDS |
| CTGGAGGAACTAGACTGCTG+CGG | 0.671536 | 1:+4223202 | None:intergenic |
| TGGACCAGAAGAACCGCTGG+AGG | 0.681587 | 1:+4223186 | None:intergenic |
| TTATAGAAAACTGAAAACAG+TGG | 0.699925 | 1:-4223080 | MsG0180000307.01.T01:CDS |
| AAAGGCATCTCAGACATGGG+TGG | 0.701972 | 1:-4223428 | MsG0180000307.01.T01:CDS |
| AAAAGGAGGAGGTATCACGT+GGG | 0.768512 | 1:-4223288 | MsG0180000307.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAACAAAAATAAAA+TGG | + | Chr1:4222822-4222841 | None:intergenic | 10.0% |
| !!! | AATTTTTATTATATAATCGT+GGG | + | Chr1:4223810-4223829 | None:intergenic | 10.0% |
| !! | AAAATTGAATAACATTAAGT+TGG | + | Chr1:4222854-4222873 | None:intergenic | 15.0% |
| !! | CTAATAATAAGAATGAAAAT+TGG | + | Chr1:4223081-4223100 | None:intergenic | 15.0% |
| !! | TTTGAAAATTGATGAAAATT+TGG | + | Chr1:4222954-4222973 | None:intergenic | 15.0% |
| !!! | GAATTTTTATTATATAATCG+TGG | + | Chr1:4223811-4223830 | None:intergenic | 15.0% |
| !!! | TATTCAATTTTATCATTCAT+TGG | - | Chr1:4222863-4222882 | MsG0180000307.01.T01:CDS | 15.0% |
| !!! | TGATATAGAAATTGAATTTT+TGG | - | Chr1:4223167-4223186 | MsG0180000307.01.T01:CDS | 15.0% |
| !!! | ATATGGTTTGATTGTTTTTT+TGG | - | Chr1:4223530-4223549 | MsG0180000307.01.T01:CDS | 20.0% |
| !!! | TCTGTATTTTTTTACTTTGT+TGG | - | Chr1:4223193-4223212 | MsG0180000307.01.T01:CDS | 20.0% |
| ! | AAAACAACAAAAGCAGAATA+AGG | + | Chr1:4224147-4224166 | None:intergenic | 25.0% |
| ! | AAATCTCTTCTAAGTTCATT+AGG | + | Chr1:4223411-4223430 | None:intergenic | 25.0% |
| ! | AACTACATACATATTTAGCA+AGG | + | Chr1:4223489-4223508 | None:intergenic | 25.0% |
| ! | AATAAAAATTCAGTTGCATC+TGG | - | Chr1:4223820-4223839 | MsG0180000307.01.T01:intron | 25.0% |
| ! | AATCAATTTCGAAATTGAAG+TGG | - | Chr1:4224028-4224047 | MsG0180000307.01.T01:intron | 25.0% |
| ! | AATCTCTTCTAAGTTCATTA+GGG | + | Chr1:4223410-4223429 | None:intergenic | 25.0% |
| ! | ATTGAAACAATTATTCGAAC+AGG | + | Chr1:4224399-4224418 | None:intergenic | 25.0% |
| ! | TCACTAATGCTTGAAATTTA+TGG | - | Chr1:4223290-4223309 | MsG0180000307.01.T01:CDS | 25.0% |
| ! | TGTGTTTATTGTATTGTTGA+AGG | - | Chr1:4223325-4223344 | MsG0180000307.01.T01:CDS | 25.0% |
| ! | TTAAGTTATAACAGAGACTT+GGG | - | Chr1:4223592-4223611 | MsG0180000307.01.T01:intron | 25.0% |
| ! | TTATAGAAAACTGAAAACAG+TGG | - | Chr1:4224062-4224081 | MsG0180000307.01.T01:intron | 25.0% |
| ! | TTGAATTCATGAAAATCTTG+AGG | - | Chr1:4223219-4223238 | MsG0180000307.01.T01:CDS | 25.0% |
| ! | TTTATTGTATTGTTGAAGGA+TGG | - | Chr1:4223329-4223348 | MsG0180000307.01.T01:CDS | 25.0% |
| !! | AACAGAGATTTTCTCAATTA+GGG | - | Chr1:4222893-4222912 | MsG0180000307.01.T01:intron | 25.0% |
| !! | TTTGTTTGAGATATTTGATG+AGG | - | Chr1:4223507-4223526 | MsG0180000307.01.T01:CDS | 25.0% |
| !!! | ATTGAATAACATTAAGTTGG+TGG | + | Chr1:4222851-4222870 | None:intergenic | 25.0% |
| !!! | TTGAATAACATTAAGTTGGT+GGG | + | Chr1:4222850-4222869 | None:intergenic | 25.0% |
| AATACCAAATGCAATACAGT+CGG | - | Chr1:4224373-4224392 | MsG0180000307.01.T01:five_prime_UTR | 30.0% | |
| GATCATCATAAAGAAACTGA+TGG | - | Chr1:4224084-4224103 | MsG0180000307.01.T01:intron | 30.0% | |
| GTTAAGTTATAACAGAGACT+TGG | - | Chr1:4223591-4223610 | MsG0180000307.01.T01:intron | 30.0% | |
| TGAGATATTTGATGAGGATA+TGG | - | Chr1:4223513-4223532 | MsG0180000307.01.T01:CDS | 30.0% | |
| TTGACGCCATGAATTAAAAT+GGG | + | Chr1:4222988-4223007 | None:intergenic | 30.0% | |
| ! | AGATTTTATCACTGCTATTG+AGG | - | Chr1:4223639-4223658 | MsG0180000307.01.T01:intron | 30.0% |
| ! | AGTTTTCTATAACCATTCCT+CGG | + | Chr1:4224054-4224073 | None:intergenic | 30.0% |
| ! | CAACAGAGATTTTCTCAATT+AGG | - | Chr1:4222892-4222911 | MsG0180000307.01.T01:intron | 30.0% |
| ! | CAATTTCGAAATTGATTCCA+CGG | + | Chr1:4224025-4224044 | None:intergenic | 30.0% |
| !!! | GGTTTGATTGTTTTTTTGGT+GGG | - | Chr1:4223534-4223553 | MsG0180000307.01.T01:CDS | 30.0% |
| !!! | TGGTTTGATTGTTTTTTTGG+TGG | - | Chr1:4223533-4223552 | MsG0180000307.01.T01:CDS | 30.0% |
| AAGCGGGTATAATAGGATTA+AGG | + | Chr1:4222739-4222758 | None:intergenic | 35.0% | |
| ACTAACCAGAACTCTTCTTT+CGG | - | Chr1:4222777-4222796 | MsG0180000307.01.T01:CDS | 35.0% | |
| AGAGATTTACTTACTACCCT+TGG | - | Chr1:4223423-4223442 | MsG0180000307.01.T01:CDS | 35.0% | |
| CCAAGAAATCCTGATAAACT+TGG | + | Chr1:4224000-4224019 | None:intergenic | 35.0% | |
| CCAAGTTTATCAGGATTTCT+TGG | - | Chr1:4223997-4224016 | MsG0180000307.01.T01:intron | 35.0% | |
| CTTGACGCCATGAATTAAAA+TGG | + | Chr1:4222989-4223008 | None:intergenic | 35.0% | |
| GAAGGATGGAATCTACATAT+AGG | - | Chr1:4223343-4223362 | MsG0180000307.01.T01:CDS | 35.0% | |
| TCTTCGGCAGCATTAAAAAA+TGG | + | Chr1:4223034-4223053 | None:intergenic | 35.0% | |
| TGGAATCTACATATAGGACA+TGG | - | Chr1:4223349-4223368 | MsG0180000307.01.T01:CDS | 35.0% | |
| ! | GTTTTTCTCCTTTGCTTGAT+TGG | - | Chr1:4224420-4224439 | MsG0180000307.01.T01:five_prime_UTR | 35.0% |
| !! | AAGAGTTCTGGTTAGTTTGT+TGG | + | Chr1:4222773-4222792 | None:intergenic | 35.0% |
| !!! | AAGCGACCCATTTTAATTCA+TGG | - | Chr1:4222979-4222998 | MsG0180000307.01.T01:intron | 35.0% |
| !!! | CTAGTGCTGATATTGGTTTT+TGG | - | Chr1:4223896-4223915 | MsG0180000307.01.T01:intron | 35.0% |
| !!! | TGTTGGTTTTGAGAATGAAG+CGG | + | Chr1:4222756-4222775 | None:intergenic | 35.0% |
| AAACTTGGCACCTTATGCAT+TGG | + | Chr1:4223985-4224004 | None:intergenic | 40.0% | |
| AAGTTCAGGAATCTGCAGAT+AGG | - | Chr1:4223053-4223072 | MsG0180000307.01.T01:CDS | 40.0% | |
| AATTCAGTTGCATCTGGTGT+TGG | - | Chr1:4223826-4223845 | MsG0180000307.01.T01:intron | 40.0% | |
| AGCATTCATCAGAACTATCG+AGG | + | Chr1:4224296-4224315 | None:intergenic | 40.0% | |
| AGGAATTTGAACGCGAAGTT+AGG | - | Chr1:4223569-4223588 | MsG0180000307.01.T01:CDS | 40.0% | |
| ATCGTTGAAACTTCGTTGTG+TGG | - | Chr1:4224171-4224190 | MsG0180000307.01.T01:five_prime_UTR | 40.0% | |
| ATGACAAGCATCTCTATGGA+TGG | - | Chr1:4224316-4224335 | MsG0180000307.01.T01:five_prime_UTR | 40.0% | |
| ATTCAGTTGCATCTGGTGTT+GGG | - | Chr1:4223827-4223846 | MsG0180000307.01.T01:intron | 40.0% | |
| CCAAAAATACTTCCAGCATG+TGG | - | Chr1:4223382-4223401 | MsG0180000307.01.T01:CDS | 40.0% | |
| CCTTTGCTTGATTGGTAAGT+CGG | - | Chr1:4224428-4224447 | MsG0180000307.01.T01:five_prime_UTR | 40.0% | |
| GAGAATGAAGCGGGTATAAT+AGG | + | Chr1:4222746-4222765 | None:intergenic | 40.0% | |
| TAGATCCGAAAGAAGAGTTC+TGG | + | Chr1:4222785-4222804 | None:intergenic | 40.0% | |
| TCCAATGGCTGAATTGAACA+GGG | - | Chr1:4224116-4224135 | MsG0180000307.01.T01:CDS | 40.0% | |
| TGCAGATTCCTGAACTTCTT+CGG | + | Chr1:4223050-4223069 | None:intergenic | 40.0% | |
| TGCTATGACAAGCATCTCTA+TGG | - | Chr1:4224312-4224331 | MsG0180000307.01.T01:five_prime_UTR | 40.0% | |
| TGGTCCAAATCCAATGCATA+AGG | - | Chr1:4223972-4223991 | MsG0180000307.01.T01:intron | 40.0% | |
| TTCCAATGGCTGAATTGAAC+AGG | - | Chr1:4224115-4224134 | MsG0180000307.01.T01:CDS | 40.0% | |
| ! | CATAAGGTGCCAAGTTTATC+AGG | - | Chr1:4223988-4224007 | MsG0180000307.01.T01:intron | 40.0% |
| ! | TGATGGTGCACTAATTCCAA+TGG | - | Chr1:4224101-4224120 | MsG0180000307.01.T01:CDS | 40.0% |
| ! | TTTGTTTCTTTCGGGAATGC+CGG | - | Chr1:4223768-4223787 | MsG0180000307.01.T01:CDS | 40.0% |
| !! | CGAGCTTGCTTTGTTTCTTT+CGG | - | Chr1:4223759-4223778 | MsG0180000307.01.T01:CDS | 40.0% |
| !! | GAGCTTGCTTTGTTTCTTTC+GGG | - | Chr1:4223760-4223779 | MsG0180000307.01.T01:CDS | 40.0% |
| !! | TAGAAAGGCATCTCAGACAT+GGG | - | Chr1:4223711-4223730 | MsG0180000307.01.T01:CDS | 40.0% |
| !!! | CATGCTGGAAGTATTTTTGG+TGG | + | Chr1:4223382-4223401 | None:intergenic | 40.0% |
| !!! | CCACATGCTGGAAGTATTTT+TGG | + | Chr1:4223385-4223404 | None:intergenic | 40.0% |
| !!! | GTTGGTTTTGAGAATGAAGC+GGG | + | Chr1:4222755-4222774 | None:intergenic | 40.0% |
| AAATTGAAGTGGCCGAGGAA+TGG | - | Chr1:4224039-4224058 | MsG0180000307.01.T01:intron | 45.0% | |
| AAGCATCTCTATGGATGGTG+TGG | - | Chr1:4224321-4224340 | MsG0180000307.01.T01:five_prime_UTR | 45.0% | |
| ACCCTGTTCAATTCAGCCAT+TGG | + | Chr1:4224120-4224139 | None:intergenic | 45.0% | |
| ATCAGGATTTCTTGGTTCCG+TGG | - | Chr1:4224005-4224024 | MsG0180000307.01.T01:intron | 45.0% | |
| CCGACTTACCAATCAAGCAA+AGG | + | Chr1:4224431-4224450 | None:intergenic | 45.0% | |
| GGCACCTTATGCATTGGATT+TGG | + | Chr1:4223979-4223998 | None:intergenic | 45.0% | |
| TAATGCTGCCGAAGAAGTTC+AGG | - | Chr1:4223039-4223058 | MsG0180000307.01.T01:CDS | 45.0% | |
| TCATGGCGTCAAGTCTTGAT+CGG | - | Chr1:4222996-4223015 | MsG0180000307.01.T01:intron | 45.0% | |
| TTAGATGAAACGAACCCTCC+AGG | - | Chr1:4223688-4223707 | MsG0180000307.01.T01:intron | 45.0% | |
| TTCATTAGGGTTCCACATGC+TGG | + | Chr1:4223397-4223416 | None:intergenic | 45.0% | |
| TTGGTGGGATATGCAGTTAG+AGG | - | Chr1:4223549-4223568 | MsG0180000307.01.T01:CDS | 45.0% | |
| TTTCGAAATTGAAGTGGCCG+AGG | - | Chr1:4224034-4224053 | MsG0180000307.01.T01:intron | 45.0% | |
| ! | ATCTCAGACATGGGTGGTTT+TGG | - | Chr1:4223720-4223739 | MsG0180000307.01.T01:CDS | 45.0% |
| ! | ATCTGGTGTTGGGGAAGAAA+AGG | - | Chr1:4223837-4223856 | MsG0180000307.01.T01:intron | 45.0% |
| ! | TTCAGTTGCATCTGGTGTTG+GGG | - | Chr1:4223828-4223847 | MsG0180000307.01.T01:intron | 45.0% |
| !! | AAAAGGAGGAGGTATCACGT+GGG | - | Chr1:4223854-4223873 | MsG0180000307.01.T01:intron | 45.0% |
| !! | GTAGAAAGGCATCTCAGACA+TGG | - | Chr1:4223710-4223729 | MsG0180000307.01.T01:CDS | 45.0% |
| !!! | TTTATTTTTTATTGAAAAAA+GGG | - | Chr1:4224237-4224256 | MsG0180000307.01.T01:five_prime_UTR | 5.0% |
| !!! | TTTTATTTTTTATTGAAAAA+AGG | - | Chr1:4224236-4224255 | MsG0180000307.01.T01:five_prime_UTR | 5.0% |
| AACGAACCCTCCAGGTAGAA+AGG | - | Chr1:4223696-4223715 | MsG0180000307.01.T01:intron | 50.0% | |
| ATTTGGACCAGAAGAACCGC+TGG | + | Chr1:4223962-4223981 | None:intergenic | 50.0% | |
| CAGGCCGACTGTATTGCATT+TGG | + | Chr1:4224380-4224399 | None:intergenic | 50.0% | |
| CTACCCTTGGCACTGCTAAA+TGG | - | Chr1:4223436-4223455 | MsG0180000307.01.T01:CDS | 50.0% | |
| GAGATGCCTTTCTACCTGGA+GGG | + | Chr1:4223705-4223724 | None:intergenic | 50.0% | |
| TGAGATGCCTTTCTACCTGG+AGG | + | Chr1:4223706-4223725 | None:intergenic | 50.0% | |
| TGGGCGATGATGCAAGAACT+AGG | - | Chr1:4223611-4223630 | MsG0180000307.01.T01:intron | 50.0% | |
| TGTTGGGGAAGAAAAGGAGG+AGG | - | Chr1:4223843-4223862 | MsG0180000307.01.T01:intron | 50.0% | |
| ! | CTGCCATTTAGCAGTGCCAA+GGG | + | Chr1:4223442-4223461 | None:intergenic | 50.0% |
| ! | GTCTGAGATGCCTTTCTACC+TGG | + | Chr1:4223709-4223728 | None:intergenic | 50.0% |
| ! | TGGTGTTGGGGAAGAAAAGG+AGG | - | Chr1:4223840-4223859 | MsG0180000307.01.T01:intron | 50.0% |
| !! | AAAGGCATCTCAGACATGGG+TGG | - | Chr1:4223714-4223733 | MsG0180000307.01.T01:CDS | 50.0% |
| !! | GAAAAGGAGGAGGTATCACG+TGG | - | Chr1:4223853-4223872 | MsG0180000307.01.T01:intron | 50.0% |
| !! | GCTAGCGCTAGTGCTGATAT+TGG | - | Chr1:4223889-4223908 | MsG0180000307.01.T01:intron | 50.0% |
| !!! | ACATGGGTGGTTTTGGACGA+AGG | - | Chr1:4223727-4223746 | MsG0180000307.01.T01:CDS | 50.0% |
| AGTTCCTCCAGCGGTTCTTC+TGG | - | Chr1:4223952-4223971 | MsG0180000307.01.T01:intron | 55.0% | |
| CCTTGGCACTGCTAAATGGC+AGG | - | Chr1:4223440-4223459 | MsG0180000307.01.T01:CDS | 55.0% | |
| CTGGAGGAACTAGACTGCTG+CGG | + | Chr1:4223943-4223962 | None:intergenic | 55.0% | |
| GGCGTCAAGTCTTGATCGGT+GGG | - | Chr1:4223000-4223019 | MsG0180000307.01.T01:intron | 55.0% | |
| TGGCGTCAAGTCTTGATCGG+TGG | - | Chr1:4222999-4223018 | MsG0180000307.01.T01:intron | 55.0% | |
| ! | AGGTATCACGTGGGCATCGT+AGG | - | Chr1:4223863-4223882 | MsG0180000307.01.T01:intron | 55.0% |
| ! | CAGCAGTCTAGTTCCTCCAG+CGG | - | Chr1:4223943-4223962 | MsG0180000307.01.T01:intron | 55.0% |
| ! | CCTGCCATTTAGCAGTGCCA+AGG | + | Chr1:4223443-4223462 | None:intergenic | 55.0% |
| ! | GGTATCACGTGGGCATCGTA+GGG | - | Chr1:4223864-4223883 | MsG0180000307.01.T01:intron | 55.0% |
| !! | GGGTTGTTGCTTTCAGCTGC+CGG | + | Chr1:4223790-4223809 | None:intergenic | 55.0% |
| TGGACCAGAAGAACCGCTGG+AGG | + | Chr1:4223959-4223978 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 4222706 | 4224458 | 4222706 | ID=MsG0180000307.01;Name=MsG0180000307.01 |
| Chr1 | mRNA | 4222706 | 4224458 | 4222706 | ID=MsG0180000307.01.T01;Parent=MsG0180000307.01;Name=MsG0180000307.01.T01;_AED=0.42;_eAED=0.42;_QI=292|1|0.75|1|1|1|4|0|321 |
| Chr1 | exon | 4224090 | 4224458 | 4224090 | ID=MsG0180000307.01.T01:exon:5650;Parent=MsG0180000307.01.T01 |
| Chr1 | exon | 4223703 | 4223817 | 4223703 | ID=MsG0180000307.01.T01:exon:5651;Parent=MsG0180000307.01.T01 |
| Chr1 | exon | 4223027 | 4223599 | 4223027 | ID=MsG0180000307.01.T01:exon:5652;Parent=MsG0180000307.01.T01 |
| Chr1 | exon | 4222706 | 4222906 | 4222706 | ID=MsG0180000307.01.T01:exon:5653;Parent=MsG0180000307.01.T01 |
| Chr1 | five_prime_UTR | 4224167 | 4224458 | 4224167 | ID=MsG0180000307.01.T01:five_prime_utr;Parent=MsG0180000307.01.T01 |
| Chr1 | CDS | 4224090 | 4224166 | 4224090 | ID=MsG0180000307.01.T01:cds;Parent=MsG0180000307.01.T01 |
| Chr1 | CDS | 4223703 | 4223817 | 4223703 | ID=MsG0180000307.01.T01:cds;Parent=MsG0180000307.01.T01 |
| Chr1 | CDS | 4223027 | 4223599 | 4223027 | ID=MsG0180000307.01.T01:cds;Parent=MsG0180000307.01.T01 |
| Chr1 | CDS | 4222706 | 4222906 | 4222706 | ID=MsG0180000307.01.T01:cds;Parent=MsG0180000307.01.T01 |
| Gene Sequence |
| Protein sequence |
