AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007120.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007120.01.T01 MTR_2g021070 93.668 458 26 3 1 456 1 457 0.0 783
MsG0280007120.01.T01 MTR_1g089850 40.079 509 191 15 1 451 1 453 5.16e-86 271
MsG0280007120.01.T01 MTR_7g094240 39.130 460 217 12 1 456 1 401 4.91e-72 233
MsG0280007120.01.T01 MTR_2g021110 85.714 42 6 0 395 436 1 42 1.98e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007120.01.T01 AT1G03350 38.632 497 211 13 1 445 1 455 2.59e-81 259
MsG0280007120.01.T01 AT4G13110 52.140 257 103 4 18 274 3 239 2.86e-77 244

Find 119 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCAATGAGTGGAAATT+AGG 0.199928 2:+10893515 MsG0280007120.01.T01:CDS
TTTGTCAAGCGGGCTATTTC+AGG 0.228356 2:+10893710 MsG0280007120.01.T01:CDS
GAGTGATGTTAATACGTATT+TGG 0.262032 2:+10893472 MsG0280007120.01.T01:CDS
TTGAAATTCACCAAATCTTC+AGG 0.309635 2:-10893500 None:intergenic
AGATTGATGATGAGAGATTC+TGG 0.312970 2:+10893630 MsG0280007120.01.T01:CDS
GTGGGTGTGTCGTGGTGGTC+TGG 0.368204 2:-10893029 None:intergenic
CTTCCTCGGGCATGGAAGGC+TGG 0.374098 2:-10894123 None:intergenic
ATGATATCGGCAGCACCGTT+TGG 0.376169 2:+10893282 MsG0280007120.01.T01:CDS
CTCTCATCATCAATCTTACT+TGG 0.378344 2:-10893623 None:intergenic
ATTTCAATGAGTGGAAATTA+GGG 0.378747 2:+10893516 MsG0280007120.01.T01:CDS
AAACTTCGCCCTTGCATCTT+CGG 0.385563 2:-10893690 None:intergenic
CGGATTTAGATGCTAGGGTT+TGG 0.390511 2:-10893085 None:intergenic
GCGCCGACATCGAGAGAAGC+AGG 0.391623 2:-10893215 None:intergenic
GTGTCGTGGTGGTCTGGATC+GGG 0.391688 2:-10893023 None:intergenic
TTGTGTGACGGTGGGGAGTC+GGG 0.391930 2:-10892984 None:intergenic
GTAATTCTCGAGGACGGATT+CGG 0.401740 2:-10893105 None:intergenic
TTTGGATGAGCCTGAAGATT+TGG 0.408355 2:+10893490 MsG0280007120.01.T01:CDS
TGTGTCGTGGTGGTCTGGAT+CGG 0.409740 2:-10893024 None:intergenic
AACCCCACTGATACTACCTT+TGG 0.415937 2:-10893795 None:intergenic
TTATAGTAGATTTGATGTAT+TGG 0.421066 2:+10893436 MsG0280007120.01.T01:CDS
GAAACCACCGCTTGGAGCTT+CGG 0.421978 2:+10893053 MsG0280007120.01.T01:CDS
GAAGCTCCAAGCGGTGGTTT+CGG 0.426345 2:-10893051 None:intergenic
ATTGTGTGACGGTGGGGAGT+CGG 0.427088 2:-10892985 None:intergenic
AGGGTTTGTGTTGGATGATA+AGG 0.428084 2:+10893535 MsG0280007120.01.T01:CDS
CCGAGGAAGAAGACATTAGT+TGG 0.450880 2:+10894137 MsG0280007120.01.T01:CDS
GCTGAGGTTGCCTCGACCAC+GGG 0.452402 2:+10893842 MsG0280007120.01.T01:CDS
TTAGAATCAGAATCAGAATC+AGG 0.454565 2:-10893353 None:intergenic
ATGAAGATGAGGATCTTAGT+TGG 0.461281 2:+10894263 MsG0280007120.01.T01:CDS
TGATGGAGGTGATGATAAGT+TGG 0.461998 2:+10893940 MsG0280007120.01.T01:CDS
CCAACTAATGTCTTCTTCCT+CGG 0.468323 2:-10894137 None:intergenic
GCTGCTGAATCTATAATTGA+TGG 0.475562 2:+10893923 MsG0280007120.01.T01:CDS
GTCTAGTGTTTCTGTAACTG+TGG 0.476889 2:+10893991 MsG0280007120.01.T01:CDS
ACCCCACTGATACTACCTTT+GGG 0.478131 2:-10893794 None:intergenic
TAGATGCTAGGGTTTGGATC+AGG 0.480308 2:-10893079 None:intergenic
GCTCCAAGCGGTGGTTTCGG+TGG 0.480804 2:-10893048 None:intergenic
CAACTAATGTCTTCTTCCTC+GGG 0.483158 2:-10894136 None:intergenic
GTCGGGTTCGTCGGAGAAAA+CGG 0.483205 2:-10892967 None:intergenic
TGCTGAGGTTGCCTCGACCA+CGG 0.489015 2:+10893841 MsG0280007120.01.T01:CDS
CACCCACCGAAACCACCGCT+TGG 0.489105 2:+10893045 MsG0280007120.01.T01:CDS
GTCTTTAACGGCGCGTGAGG+CGG 0.489791 2:-10893189 None:intergenic
CGGCGCGTGAGGCGGCGTCA+CGG 0.491888 2:-10893181 None:intergenic
GAAGATTGAAAATGATGAGA+AGG 0.491908 2:+10893895 MsG0280007120.01.T01:CDS
AGAAGCAGGGAGGTCTTTAA+CGG 0.492354 2:-10893201 None:intergenic
TGTCGGCGCCTCCGTCGCTC+AGG 0.497970 2:+10893229 MsG0280007120.01.T01:CDS
TCTTCTTCCTCGGGCATGGA+AGG 0.499963 2:-10894127 None:intergenic
GGTCAAGCAATCGATGATAT+CGG 0.506147 2:+10893269 MsG0280007120.01.T01:CDS
ATGAAGAGGAGGATCTGAGC+TGG 0.507710 2:+10893735 MsG0280007120.01.T01:CDS
AAGATTGAAAATGATGAGAA+GGG 0.509991 2:+10893896 MsG0280007120.01.T01:CDS
CGGTGGGGAGTCGGGTTCGT+CGG 0.510003 2:-10892976 None:intergenic
AATGTCTTCTTCCTCGGGCA+TGG 0.512018 2:-10894131 None:intergenic
CGGATTCGGATTTAGATGCT+AGG 0.512216 2:-10893091 None:intergenic
ATTACCATCACCCGTGGTCG+AGG 0.513378 2:-10893852 None:intergenic
CTCCAAGCGGTGGTTTCGGT+GGG 0.515206 2:-10893047 None:intergenic
TGAAGATGAGGATCTTAGTT+GGG 0.516562 2:+10894264 MsG0280007120.01.T01:CDS
TGGATCGGGTTGATCGGAAT+CGG 0.519263 2:-10893009 None:intergenic
ATTTGGTGAATTTCAATGAG+TGG 0.519976 2:+10893507 MsG0280007120.01.T01:CDS
GTGGTCTGGATCGGGTTGAT+CGG 0.520661 2:-10893015 None:intergenic
TTAAGCAAGCCGAAGATGCA+AGG 0.534094 2:+10893681 MsG0280007120.01.T01:CDS
GTGGAAATTAGGGTTTGTGT+TGG 0.536121 2:+10893526 MsG0280007120.01.T01:CDS
CGAGGAAGAAGACATTAGTT+GGG 0.539070 2:+10894138 MsG0280007120.01.T01:CDS
TGAGGCGGCGTCACGGATGA+CGG 0.540250 2:-10893174 None:intergenic
AGGTGATGATAAGTTGGAGG+AGG 0.542302 2:+10893946 MsG0280007120.01.T01:CDS
TGGGGTTTCTAAACAGAAAG+AGG 0.543504 2:+10893811 MsG0280007120.01.T01:CDS
AGCCCAAAGGTAGTATCAGT+GGG 0.544256 2:+10893792 MsG0280007120.01.T01:CDS
ATGATGAGAGATTCTGGAGT+AGG 0.551247 2:+10893636 MsG0280007120.01.T01:CDS
CTGAAAGTAAGATTGATTTG+CGG 0.554712 2:+10894215 MsG0280007120.01.T01:CDS
GTTGCCTCGACCACGGGTGA+TGG 0.556251 2:+10893848 MsG0280007120.01.T01:CDS
AATCGGAATTGTGTGACGGT+GGG 0.557843 2:-10892992 None:intergenic
AAGGGCGAAGTTTGTCAAGC+GGG 0.565151 2:+10893700 MsG0280007120.01.T01:CDS
ATGATGATGATGACGACGAC+GGG 0.568972 2:+10893765 MsG0280007120.01.T01:CDS
GGATTCGGATTTAGATGCTA+GGG 0.570318 2:-10893090 None:intergenic
CAGGAATCGCTTGAAACCGT+TGG 0.571487 2:+10893248 MsG0280007120.01.T01:CDS
TCTAGTGTTTCTGTAACTGT+GGG 0.574745 2:+10893992 MsG0280007120.01.T01:CDS
TTCAAGCGATTCCTGAGCGA+CGG 0.576574 2:-10893240 None:intergenic
AAGCGATTCCTGAGCGACGG+AGG 0.576839 2:-10893237 None:intergenic
GAGGTCTTTAACGGCGCGTG+AGG 0.578229 2:-10893192 None:intergenic
ATCGGAATTGTGTGACGGTG+GGG 0.580065 2:-10892991 None:intergenic
TGGTTTCGGTGGGTGTGTCG+TGG 0.580478 2:-10893037 None:intergenic
AGCTGAATTCTTCGAGATCG+CGG 0.580738 2:-10893130 None:intergenic
GGCTATTTCAGGTGATGAAG+AGG 0.586796 2:+10893721 MsG0280007120.01.T01:CDS
CGCAGATTATCTCTCACGGT+AGG 0.589720 2:+10893315 MsG0280007120.01.T01:CDS
CGCCGACATCGAGAGAAGCA+GGG 0.591615 2:-10893214 None:intergenic
ATCATCGATTGCTTGACCAA+CGG 0.591992 2:-10893264 None:intergenic
GCCGCCGAAGCTCCAAGCGG+TGG 0.593461 2:-10893057 None:intergenic
TGAAGAGGAGGATCTGAGCT+GGG 0.602076 2:+10893736 MsG0280007120.01.T01:CDS
CTCCCTGCTTCTCTCGATGT+CGG 0.602545 2:+10893212 MsG0280007120.01.T01:CDS
CTGCGCCGTCGATTTCCAAA+CGG 0.602848 2:-10893297 None:intergenic
TTTCGGTGGGTGTGTCGTGG+TGG 0.607468 2:-10893034 None:intergenic
TAAGCAAGCCGAAGATGCAA+GGG 0.609465 2:+10893682 MsG0280007120.01.T01:CDS
GAGCCCAAAGGTAGTATCAG+TGG 0.610008 2:+10893791 MsG0280007120.01.T01:CDS
GGGTGATCAAGATGATAAGT+TGG 0.610527 2:+10894012 MsG0280007120.01.T01:CDS
GATGATGATGATGACGACGA+CGG 0.611637 2:+10893764 MsG0280007120.01.T01:CDS
GCAGATTATCTCTCACGGTA+GGG 0.614134 2:+10893316 MsG0280007120.01.T01:CDS
ACCACCGCTTGGAGCTTCGG+CGG 0.616081 2:+10893056 MsG0280007120.01.T01:CDS
TGGAGGTGATGATAAGTTGG+AGG 0.616690 2:+10893943 MsG0280007120.01.T01:CDS
AAGCCAGCCTTCCATGCCCG+AGG 0.616699 2:+10894120 MsG0280007120.01.T01:CDS
GAATCGGAATTGTGTGACGG+TGG 0.620249 2:-10892993 None:intergenic
TGTGGCATCAGAAGTGAAGA+CGG 0.625798 2:+10894045 MsG0280007120.01.T01:CDS
AGCAACCGCTGATGAAGATG+AGG 0.636761 2:+10894252 MsG0280007120.01.T01:CDS
CAGCACCGTTTGGAAATCGA+CGG 0.640183 2:+10893292 MsG0280007120.01.T01:CDS
GAAAGAGGATAATTCTGCTG+AGG 0.640983 2:+10893826 MsG0280007120.01.T01:CDS
TATTTCAGGTGATGAAGAGG+AGG 0.644797 2:+10893724 MsG0280007120.01.T01:CDS
GATCTCGAAGAATTCAGCTC+CGG 0.648737 2:+10893134 MsG0280007120.01.T01:CDS
CTCCGCATTACCATCACCCG+TGG 0.654377 2:-10893858 None:intergenic
CAAGGGCGAAGTTTGTCAAG+CGG 0.659102 2:+10893699 MsG0280007120.01.T01:CDS
GCGGCGGTAATTCTCGAGGA+CGG 0.675565 2:-10893111 None:intergenic
AAGATCCTCATCTTCATCAG+CGG 0.678797 2:-10894257 None:intergenic
GCTGAATCTATAATTGATGG+AGG 0.679538 2:+10893926 MsG0280007120.01.T01:CDS
GACCACGGGTGATGGTAATG+CGG 0.679548 2:+10893856 MsG0280007120.01.T01:CDS
GATCGCGGCGGTAATTCTCG+AGG 0.684942 2:-10893115 None:intergenic
GGAGAATTATGATGACAATG+TGG 0.699852 2:+10893967 MsG0280007120.01.T01:CDS
ACGGCGCAGATTATCTCTCA+CGG 0.701554 2:+10893311 MsG0280007120.01.T01:CDS
AAGACGGATAATGATAACAG+TGG 0.716837 2:+10894061 MsG0280007120.01.T01:CDS
TCGGAATCGGAATTGTGTGA+CGG 0.726675 2:-10892996 None:intergenic
CGACATCGAGAGAAGCAGGG+AGG 0.739980 2:-10893211 None:intergenic
GACGACGGGTATGAGCCCAA+AGG 0.745058 2:+10893779 MsG0280007120.01.T01:CDS
CAGGCCGCCGAAGCTCCAAG+CGG 0.748749 2:-10893060 None:intergenic
GCCCAAAGGTAGTATCAGTG+GGG 0.763111 2:+10893793 MsG0280007120.01.T01:CDS
TGAATTCTTCGAGATCGCGG+CGG 0.770339 2:-10893127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAGTAGATTTGATGTAT+TGG + Chr2:10893436-10893455 MsG0280007120.01.T01:CDS 20.0%
! AAACCAATGATGAAAAAAGA+GGG + Chr2:10894179-10894198 MsG0280007120.01.T01:CDS 25.0%
! AAGATTGAAAATGATGAGAA+GGG + Chr2:10893896-10893915 MsG0280007120.01.T01:CDS 25.0%
! AATTTCAATGAGTGGAAATT+AGG + Chr2:10893515-10893534 MsG0280007120.01.T01:CDS 25.0%
! ATTTCAATGAGTGGAAATTA+GGG + Chr2:10893516-10893535 MsG0280007120.01.T01:CDS 25.0%
!! TAAGTTGGATGTAAAAAATG+TGG + Chr2:10894027-10894046 MsG0280007120.01.T01:CDS 25.0%
AACCAATGATGAAAAAAGAG+GGG + Chr2:10894180-10894199 MsG0280007120.01.T01:CDS 30.0%
GAAACCAATGATGAAAAAAG+AGG + Chr2:10894178-10894197 MsG0280007120.01.T01:CDS 30.0%
GAAGATTGAAAATGATGAGA+AGG + Chr2:10893895-10893914 MsG0280007120.01.T01:CDS 30.0%
GAGTGATGTTAATACGTATT+TGG + Chr2:10893472-10893491 MsG0280007120.01.T01:CDS 30.0%
TTAGAATCAGAATCAGAATC+AGG - Chr2:10893356-10893375 None:intergenic 30.0%
TTGAAATTCACCAAATCTTC+AGG - Chr2:10893503-10893522 None:intergenic 30.0%
! ATTTGGTGAATTTCAATGAG+TGG + Chr2:10893507-10893526 MsG0280007120.01.T01:CDS 30.0%
!! CTGAAAGTAAGATTGATTTG+CGG + Chr2:10894215-10894234 MsG0280007120.01.T01:CDS 30.0%
AAGACGGATAATGATAACAG+TGG + Chr2:10894061-10894080 MsG0280007120.01.T01:CDS 35.0%
ATGAAGATGAGGATCTTAGT+TGG + Chr2:10894263-10894282 MsG0280007120.01.T01:CDS 35.0%
CTCTCATCATCAATCTTACT+TGG - Chr2:10893626-10893645 None:intergenic 35.0%
GCTGAATCTATAATTGATGG+AGG + Chr2:10893926-10893945 MsG0280007120.01.T01:CDS 35.0%
GCTGCTGAATCTATAATTGA+TGG + Chr2:10893923-10893942 MsG0280007120.01.T01:CDS 35.0%
GGAGAATTATGATGACAATG+TGG + Chr2:10893967-10893986 MsG0280007120.01.T01:CDS 35.0%
TGAAGATGAGGATCTTAGTT+GGG + Chr2:10894264-10894283 MsG0280007120.01.T01:CDS 35.0%
TTGAGTAGTAGTAGTAGTGT+TGG + Chr2:10893401-10893420 MsG0280007120.01.T01:CDS 35.0%
! TCTAGTGTTTCTGTAACTGT+GGG + Chr2:10893992-10894011 MsG0280007120.01.T01:CDS 35.0%
!! AGATTGATGATGAGAGATTC+TGG + Chr2:10893630-10893649 MsG0280007120.01.T01:CDS 35.0%
!! GGATGTTTCAATTTTCAAGC+CGG - Chr2:10893156-10893175 None:intergenic 35.0%
!!! ATCCCCTCTTTTTTCATCAT+TGG - Chr2:10894185-10894204 None:intergenic 35.0%
AAGATCCTCATCTTCATCAG+CGG - Chr2:10894260-10894279 None:intergenic 40.0%
AGGGTTTGTGTTGGATGATA+AGG + Chr2:10893535-10893554 MsG0280007120.01.T01:CDS 40.0%
CAACTAATGTCTTCTTCCTC+GGG - Chr2:10894139-10894158 None:intergenic 40.0%
CCAACTAATGTCTTCTTCCT+CGG - Chr2:10894140-10894159 None:intergenic 40.0%
CGAGGAAGAAGACATTAGTT+GGG + Chr2:10894138-10894157 MsG0280007120.01.T01:CDS 40.0%
GAAAGAGGATAATTCTGCTG+AGG + Chr2:10893826-10893845 MsG0280007120.01.T01:CDS 40.0%
GGATTCGGATTTAGATGCTA+GGG - Chr2:10893093-10893112 None:intergenic 40.0%
GGGTGATCAAGATGATAAGT+TGG + Chr2:10894012-10894031 MsG0280007120.01.T01:CDS 40.0%
GGTCAAGCAATCGATGATAT+CGG + Chr2:10893269-10893288 MsG0280007120.01.T01:CDS 40.0%
GTGGAAATTAGGGTTTGTGT+TGG + Chr2:10893526-10893545 MsG0280007120.01.T01:CDS 40.0%
TGATGGAGGTGATGATAAGT+TGG + Chr2:10893940-10893959 MsG0280007120.01.T01:CDS 40.0%
TGGGGTTTCTAAACAGAAAG+AGG + Chr2:10893811-10893830 MsG0280007120.01.T01:CDS 40.0%
TTTGGATGAGCCTGAAGATT+TGG + Chr2:10893490-10893509 MsG0280007120.01.T01:CDS 40.0%
! ATCATCGATTGCTTGACCAA+CGG - Chr2:10893267-10893286 None:intergenic 40.0%
! GTCTAGTGTTTCTGTAACTG+TGG + Chr2:10893991-10894010 MsG0280007120.01.T01:CDS 40.0%
! TATTTCAGGTGATGAAGAGG+AGG + Chr2:10893724-10893743 MsG0280007120.01.T01:CDS 40.0%
!! ATGATGAGAGATTCTGGAGT+AGG + Chr2:10893636-10893655 MsG0280007120.01.T01:CDS 40.0%
AAACTTCGCCCTTGCATCTT+CGG - Chr2:10893693-10893712 None:intergenic 45.0%
AACCCCACTGATACTACCTT+TGG - Chr2:10893798-10893817 None:intergenic 45.0%
AATCGGAATTGTGTGACGGT+GGG - Chr2:10892995-10893014 None:intergenic 45.0%
ACCCCACTGATACTACCTTT+GGG - Chr2:10893797-10893816 None:intergenic 45.0%
AGAAGCAGGGAGGTCTTTAA+CGG - Chr2:10893204-10893223 None:intergenic 45.0%
AGCCCAAAGGTAGTATCAGT+GGG + Chr2:10893792-10893811 MsG0280007120.01.T01:CDS 45.0%
AGCTGAATTCTTCGAGATCG+CGG - Chr2:10893133-10893152 None:intergenic 45.0%
CCGAGGAAGAAGACATTAGT+TGG + Chr2:10894137-10894156 MsG0280007120.01.T01:CDS 45.0%
CGGATTCGGATTTAGATGCT+AGG - Chr2:10893094-10893113 None:intergenic 45.0%
CGGATTTAGATGCTAGGGTT+TGG - Chr2:10893088-10893107 None:intergenic 45.0%
GATCTCGAAGAATTCAGCTC+CGG + Chr2:10893134-10893153 MsG0280007120.01.T01:CDS 45.0%
GCAGATTATCTCTCACGGTA+GGG + Chr2:10893316-10893335 MsG0280007120.01.T01:CDS 45.0%
TAAGCAAGCCGAAGATGCAA+GGG + Chr2:10893682-10893701 MsG0280007120.01.T01:CDS 45.0%
TAGATGCTAGGGTTTGGATC+AGG - Chr2:10893082-10893101 None:intergenic 45.0%
TCGGAATCGGAATTGTGTGA+CGG - Chr2:10892999-10893018 None:intergenic 45.0%
TGTGGCATCAGAAGTGAAGA+CGG + Chr2:10894045-10894064 MsG0280007120.01.T01:CDS 45.0%
TTAAGCAAGCCGAAGATGCA+AGG + Chr2:10893681-10893700 MsG0280007120.01.T01:CDS 45.0%
! AGGTGATGATAAGTTGGAGG+AGG + Chr2:10893946-10893965 MsG0280007120.01.T01:CDS 45.0%
! ATGATGATGATGACGACGAC+GGG + Chr2:10893765-10893784 MsG0280007120.01.T01:CDS 45.0%
! GATGATGATGATGACGACGA+CGG + Chr2:10893764-10893783 MsG0280007120.01.T01:CDS 45.0%
! GGCTATTTCAGGTGATGAAG+AGG + Chr2:10893721-10893740 MsG0280007120.01.T01:CDS 45.0%
! GTAATTCTCGAGGACGGATT+CGG - Chr2:10893108-10893127 None:intergenic 45.0%
! TGGAGGTGATGATAAGTTGG+AGG + Chr2:10893943-10893962 MsG0280007120.01.T01:CDS 45.0%
!! TTTGTCAAGCGGGCTATTTC+AGG + Chr2:10893710-10893729 MsG0280007120.01.T01:CDS 45.0%
AAGGGCGAAGTTTGTCAAGC+GGG + Chr2:10893700-10893719 MsG0280007120.01.T01:CDS 50.0%
AATGTCTTCTTCCTCGGGCA+TGG - Chr2:10894134-10894153 None:intergenic 50.0%
ACGGCGCAGATTATCTCTCA+CGG + Chr2:10893311-10893330 MsG0280007120.01.T01:CDS 50.0%
AGCAACCGCTGATGAAGATG+AGG + Chr2:10894252-10894271 MsG0280007120.01.T01:CDS 50.0%
ATCGGAATTGTGTGACGGTG+GGG - Chr2:10892994-10893013 None:intergenic 50.0%
ATGAAGAGGAGGATCTGAGC+TGG + Chr2:10893735-10893754 MsG0280007120.01.T01:CDS 50.0%
ATGATATCGGCAGCACCGTT+TGG + Chr2:10893282-10893301 MsG0280007120.01.T01:CDS 50.0%
CAAGGGCGAAGTTTGTCAAG+CGG + Chr2:10893699-10893718 MsG0280007120.01.T01:CDS 50.0%
CAGCACCGTTTGGAAATCGA+CGG + Chr2:10893292-10893311 MsG0280007120.01.T01:CDS 50.0%
CAGGAATCGCTTGAAACCGT+TGG + Chr2:10893248-10893267 MsG0280007120.01.T01:CDS 50.0%
CGCAGATTATCTCTCACGGT+AGG + Chr2:10893315-10893334 MsG0280007120.01.T01:CDS 50.0%
GAATCGGAATTGTGTGACGG+TGG - Chr2:10892996-10893015 None:intergenic 50.0%
GAGCCCAAAGGTAGTATCAG+TGG + Chr2:10893791-10893810 MsG0280007120.01.T01:CDS 50.0%
GCCCAAAGGTAGTATCAGTG+GGG + Chr2:10893793-10893812 MsG0280007120.01.T01:CDS 50.0%
TGAAGAGGAGGATCTGAGCT+GGG + Chr2:10893736-10893755 MsG0280007120.01.T01:CDS 50.0%
TGAATTCTTCGAGATCGCGG+CGG - Chr2:10893130-10893149 None:intergenic 50.0%
TTCAAGCGATTCCTGAGCGA+CGG - Chr2:10893243-10893262 None:intergenic 50.0%
!! TGGATCGGGTTGATCGGAAT+CGG - Chr2:10893012-10893031 None:intergenic 50.0%
ATTACCATCACCCGTGGTCG+AGG - Chr2:10893855-10893874 None:intergenic 55.0%
ATTGTGTGACGGTGGGGAGT+CGG - Chr2:10892988-10893007 None:intergenic 55.0%
CTCCCTGCTTCTCTCGATGT+CGG + Chr2:10893212-10893231 MsG0280007120.01.T01:CDS 55.0%
GAAACCACCGCTTGGAGCTT+CGG + Chr2:10893053-10893072 MsG0280007120.01.T01:CDS 55.0%
GAAGCTCCAAGCGGTGGTTT+CGG - Chr2:10893054-10893073 None:intergenic 55.0%
GTCGGGTTCGTCGGAGAAAA+CGG - Chr2:10892970-10892989 None:intergenic 55.0%
TCTTCTTCCTCGGGCATGGA+AGG - Chr2:10894130-10894149 None:intergenic 55.0%
TGTGTCGTGGTGGTCTGGAT+CGG - Chr2:10893027-10893046 None:intergenic 55.0%
! GACCACGGGTGATGGTAATG+CGG + Chr2:10893856-10893875 MsG0280007120.01.T01:CDS 55.0%
!! CTGCGCCGTCGATTTCCAAA+CGG - Chr2:10893300-10893319 None:intergenic 55.0%
!! GTGGTCTGGATCGGGTTGAT+CGG - Chr2:10893018-10893037 None:intergenic 55.0%
AAGCGATTCCTGAGCGACGG+AGG - Chr2:10893240-10893259 None:intergenic 60.0%
CGACATCGAGAGAAGCAGGG+AGG - Chr2:10893214-10893233 None:intergenic 60.0%
CGCCGACATCGAGAGAAGCA+GGG - Chr2:10893217-10893236 None:intergenic 60.0%
CTCCAAGCGGTGGTTTCGGT+GGG - Chr2:10893050-10893069 None:intergenic 60.0%
CTCCGCATTACCATCACCCG+TGG - Chr2:10893861-10893880 None:intergenic 60.0%
GACGACGGGTATGAGCCCAA+AGG + Chr2:10893779-10893798 MsG0280007120.01.T01:CDS 60.0%
GAGGTCTTTAACGGCGCGTG+AGG - Chr2:10893195-10893214 None:intergenic 60.0%
GATCGCGGCGGTAATTCTCG+AGG - Chr2:10893118-10893137 None:intergenic 60.0%
GCGGCGGTAATTCTCGAGGA+CGG - Chr2:10893114-10893133 None:intergenic 60.0%
GTCTTTAACGGCGCGTGAGG+CGG - Chr2:10893192-10893211 None:intergenic 60.0%
GTGTCGTGGTGGTCTGGATC+GGG - Chr2:10893026-10893045 None:intergenic 60.0%
TGCTGAGGTTGCCTCGACCA+CGG + Chr2:10893841-10893860 MsG0280007120.01.T01:CDS 60.0%
TGGTTTCGGTGGGTGTGTCG+TGG - Chr2:10893040-10893059 None:intergenic 60.0%
TTGTGTGACGGTGGGGAGTC+GGG - Chr2:10892987-10893006 None:intergenic 60.0%
TTTCGGTGGGTGTGTCGTGG+TGG - Chr2:10893037-10893056 None:intergenic 60.0%
AAGCCAGCCTTCCATGCCCG+AGG + Chr2:10894120-10894139 MsG0280007120.01.T01:CDS 65.0%
ACCACCGCTTGGAGCTTCGG+CGG + Chr2:10893056-10893075 MsG0280007120.01.T01:CDS 65.0%
CACCCACCGAAACCACCGCT+TGG + Chr2:10893045-10893064 MsG0280007120.01.T01:CDS 65.0%
CTTCCTCGGGCATGGAAGGC+TGG - Chr2:10894126-10894145 None:intergenic 65.0%
GCTCCAAGCGGTGGTTTCGG+TGG - Chr2:10893051-10893070 None:intergenic 65.0%
GCTGAGGTTGCCTCGACCAC+GGG + Chr2:10893842-10893861 MsG0280007120.01.T01:CDS 65.0%
GTGGGTGTGTCGTGGTGGTC+TGG - Chr2:10893032-10893051 None:intergenic 65.0%
GTTGCCTCGACCACGGGTGA+TGG + Chr2:10893848-10893867 MsG0280007120.01.T01:CDS 65.0%
TGAGGCGGCGTCACGGATGA+CGG - Chr2:10893177-10893196 None:intergenic 65.0%
! GCGCCGACATCGAGAGAAGC+AGG - Chr2:10893218-10893237 None:intergenic 65.0%
CAGGCCGCCGAAGCTCCAAG+CGG - Chr2:10893063-10893082 None:intergenic 70.0%
CGGTGGGGAGTCGGGTTCGT+CGG - Chr2:10892979-10892998 None:intergenic 70.0%
GCCGCCGAAGCTCCAAGCGG+TGG - Chr2:10893060-10893079 None:intergenic 75.0%
TGTCGGCGCCTCCGTCGCTC+AGG + Chr2:10893229-10893248 MsG0280007120.01.T01:CDS 75.0%
! CGGCGCGTGAGGCGGCGTCA+CGG - Chr2:10893184-10893203 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 10892951 10894321 10892951 ID=MsG0280007120.01;Name=MsG0280007120.01
Chr2 mRNA 10892951 10894321 10892951 ID=MsG0280007120.01.T01;Parent=MsG0280007120.01;Name=MsG0280007120.01.T01;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|456
Chr2 exon 10892951 10894321 10892951 ID=MsG0280007120.01.T01:exon:2578;Parent=MsG0280007120.01.T01
Chr2 CDS 10892951 10894321 10892951 ID=MsG0280007120.01.T01:cds;Parent=MsG0280007120.01.T01
Gene Sequence

>MsG0280007120.01.T01

ATGAACTTTTTCAAAACCGTTTTCTCCGACGAACCCGACTCCCCACCGTCACACAATTCCGATTCCGATCAACCCGATCCAGACCACCACGACACACCCACCGAAACCACCGCTTGGAGCTTCGGCGGCCTGATCCAAACCCTAGCATCTAAATCCGAATCCGTCCTCGAGAATTACCGCCGCGATCTCGAAGAATTCAGCTCCGGCTTGAAAATTGAAACATCCGTCATCCGTGACGCCGCCTCACGCGCCGTTAAAGACCTCCCTGCTTCTCTCGATGTCGGCGCCTCCGTCGCTCAGGAATCGCTTGAAACCGTTGGTCAAGCAATCGATGATATCGGCAGCACCGTTTGGAAATCGACGGCGCAGATTATCTCTCACGGTAGGGATTCTCTTTTAGCACCTGATTCTGATTCTGATTCTAATGATTCAAATAATATTAAGAGAGATTTGAGTAGTAGTAGTAGTGTTGGTGATTTGAAACGTTATAGTAGATTTGATGTATTGGTTCGTGCTCTTCAGAGTGATGTTAATACGTATTTGGATGAGCCTGAAGATTTGGTGAATTTCAATGAGTGGAAATTAGGGTTTGTGTTGGATGATAAGGTTGATGAGATTGAGAATTTGATTAAAGAAAATGATGTTGTTGATAAGATTTATGTGAAGATTGTTCCAAGTAAGATTGATGATGAGAGATTCTGGAGTAGGTATTTCTATAAGCTGCATAAGCTTAAGCAAGCCGAAGATGCAAGGGCGAAGTTTGTCAAGCGGGCTATTTCAGGTGATGAAGAGGAGGATCTGAGCTGGGATTTCGATGATGATGATGACGACGACGGGTATGAGCCCAAAGGTAGTATCAGTGGGGTTTCTAAACAGAAAGAGGATAATTCTGCTGAGGTTGCCTCGACCACGGGTGATGGTAATGCGGAGACAGTTAAGAATTTGAAGATTGAAAATGATGAGAAGGGTATTGCTGCTGAATCTATAATTGATGGAGGTGATGATAAGTTGGAGGAGGAGAATTATGATGACAATGTGGTGTCTAGTGTTTCTGTAACTGTGGGTGATCAAGATGATAAGTTGGATGTAAAAAATGTGGCATCAGAAGTGAAGACGGATAATGATAACAGTGGTGAATCGTGCAAAGATAGTGATATTTCAATTGTTTCAAGCCAGCCTTCCATGCCCGAGGAAGAAGACATTAGTTGGGATGAAATTGAAGACGTTGAAACCAATGATGAAAAAAGAGGGGATGCTAGTGCGTCTGAAAGTAAGATTGATTTGCGGAAGAGATTGAGTGCAGCAACCGCTGATGAAGATGAGGATCTTAGTTGGGATATTGAAGATGATGATGAAGCTGTCAAGTCATGA

Protein sequence

>MsG0280007120.01.T01

MNFFKTVFSDEPDSPPSHNSDSDQPDPDHHDTPTETTAWSFGGLIQTLASKSESVLENYRRDLEEFSSGLKIETSVIRDAASRAVKDLPASLDVGASVAQESLETVGQAIDDIGSTVWKSTAQIISHGRDSLLAPDSDSDSNDSNNIKRDLSSSSSVGDLKRYSRFDVLVRALQSDVNTYLDEPEDLVNFNEWKLGFVLDDKVDEIENLIKENDVVDKIYVKIVPSKIDDERFWSRYFYKLHKLKQAEDARAKFVKRAISGDEEEDLSWDFDDDDDDDGYEPKGSISGVSKQKEDNSAEVASTTGDGNAETVKNLKIENDEKGIAAESIIDGGDDKLEEENYDDNVVSSVSVTVGDQDDKLDVKNVASEVKTDNDNSGESCKDSDISIVSSQPSMPEEEDISWDEIEDVETNDEKRGDASASESKIDLRKRLSAATADEDEDLSWDIEDDDEAVKS*