AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000220.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000220.01.T01 MTR_1g021110 76.163 516 17 3 217 626 308 823 0.0 761
MsG0180000220.01.T01 MTR_1g021110 92.118 203 14 1 1 201 1 203 3.83e-109 347
MsG0180000220.01.T01 MTR_1g021100 60.928 517 93 5 217 626 310 824 0.0 594
MsG0180000220.01.T01 MTR_1g021100 63.235 204 63 5 1 196 1 200 6.87e-70 242
MsG0180000220.01.T01 MTR_0391s0020 28.302 530 253 7 222 625 289 817 5.40e-63 223
MsG0180000220.01.T01 MTR_5g018070 27.759 598 280 12 164 625 166 747 1.68e-60 215
MsG0180000220.01.T01 MTR_5g018120 28.927 522 242 9 226 625 287 801 7.22e-60 214
MsG0180000220.01.T01 MTR_8g079450 27.048 525 254 7 226 624 285 806 5.67e-57 206
MsG0180000220.01.T01 MTR_5g018060 27.188 537 249 10 222 625 298 825 7.98e-56 203
MsG0180000220.01.T01 MTR_5g018210 27.593 540 252 9 222 625 296 832 5.17e-55 201
MsG0180000220.01.T01 MTR_8g079400 26.404 534 264 7 217 624 260 790 2.63e-51 190
MsG0180000220.01.T01 MTR_8g079400 26.404 534 264 7 217 624 250 780 3.84e-51 189
MsG0180000220.01.T01 MTR_8g079280 28.330 533 249 10 222 625 226 754 5.36e-51 188
MsG0180000220.01.T01 MTR_8g079360 26.843 529 258 7 222 624 279 804 9.64e-51 188
MsG0180000220.01.T01 MTR_8g079550 26.641 518 254 9 216 617 278 785 5.11e-46 174
MsG0180000220.01.T01 MTR_8g079520 26.036 507 252 9 226 617 294 792 6.15e-44 168
MsG0180000220.01.T01 MTR_8g479430 27.486 553 275 14 190 624 267 811 5.57e-42 162
MsG0180000220.01.T01 MTR_8g479450 28.067 481 255 10 188 588 284 753 2.69e-41 160
MsG0180000220.01.T01 MTR_8g079355 31.560 282 134 2 403 625 18 299 9.35e-41 150
MsG0180000220.01.T01 MTR_8g079380 27.062 388 200 5 317 624 183 567 4.57e-38 149
MsG0180000220.01.T01 MTR_8g039910 26.448 397 236 12 230 588 355 733 6.16e-16 82.4
MsG0180000220.01.T01 MTR_8g039870 26.448 397 236 12 230 588 355 733 6.16e-16 82.4
MsG0180000220.01.T01 MTR_7g024973 27.344 128 66 1 522 622 2 129 2.84e-13 67.4
MsG0180000220.01.T01 MTR_3g020640 25.436 401 248 14 233 593 351 740 3.02e-13 73.6
MsG0180000220.01.T01 MTR_6g016000 23.965 459 253 17 181 588 352 765 6.32e-13 72.8
MsG0180000220.01.T01 MTR_6g076220 23.426 397 249 11 232 588 350 731 8.74e-13 72.0
MsG0180000220.01.T01 MTR_6g074855 24.304 395 226 16 232 591 399 755 9.00e-13 72.0
MsG0180000220.01.T01 MTR_2g012770 23.058 399 244 11 232 588 354 731 2.54e-12 70.5
MsG0180000220.01.T01 MTR_5g018160 27.805 205 112 4 226 397 182 383 9.46e-12 67.8
MsG0180000220.01.T01 MTR_0277s0010 21.859 398 234 12 231 588 347 707 9.46e-12 68.9
MsG0180000220.01.T01 MTR_7g024980 28.144 167 99 4 313 461 8 171 1.12e-11 64.7
MsG0180000220.01.T01 MTR_8g069625 38.144 97 57 2 492 588 611 704 1.26e-11 68.6
MsG0180000220.01.T01 MTR_6g016000 23.841 453 249 16 181 567 352 774 3.23e-11 67.0
MsG0180000220.01.T01 MTR_6g072540 23.485 396 228 13 232 591 346 702 7.67e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000220.01.T01 AT4G33300 42.524 515 185 5 219 626 306 816 2.08e-126 392
MsG0180000220.01.T01 AT4G33300 43.902 205 106 4 1 198 1 203 2.16e-40 158
MsG0180000220.01.T01 AT4G33300 42.524 515 185 5 219 626 306 816 2.08e-126 392
MsG0180000220.01.T01 AT4G33300 43.902 205 106 4 1 198 1 203 2.16e-40 158
MsG0180000220.01.T01 AT5G04720 40.755 503 183 5 232 624 312 809 1.77e-121 379
MsG0180000220.01.T01 AT5G04720 39.037 187 110 2 11 195 12 196 4.49e-30 126
MsG0180000220.01.T01 AT5G47280 38.447 515 206 6 219 626 113 623 1.77e-116 361
MsG0180000220.01.T01 AT1G33560 31.692 792 367 19 2 626 3 787 6.33e-113 356
MsG0180000220.01.T01 AT5G66900 26.848 514 257 10 222 625 303 807 1.28e-46 176
MsG0180000220.01.T01 AT5G66900 26.848 514 257 10 222 625 351 855 1.69e-46 176
MsG0180000220.01.T01 AT5G66910 26.750 557 275 13 190 624 267 812 2.20e-45 173
MsG0180000220.01.T01 AT5G66890 27.049 366 190 10 330 625 55 413 3.82e-29 120
MsG0180000220.01.T01 AT3G26470 42.105 133 74 1 1 130 1 133 3.45e-23 99.0
MsG0180000220.01.T01 AT5G38340 25.296 423 231 13 230 583 385 791 2.56e-17 86.7
MsG0180000220.01.T01 AT5G38340 25.296 423 231 13 230 583 385 791 2.56e-17 86.7
MsG0180000220.01.T01 AT5G38340 25.296 423 231 13 230 583 179 585 2.67e-17 86.7
MsG0180000220.01.T01 AT5G58120 24.129 402 233 13 230 574 340 726 5.41e-14 76.3
MsG0180000220.01.T01 AT3G25510 35.507 138 80 2 453 588 566 696 9.59e-14 75.5
MsG0180000220.01.T01 AT3G25510 36.842 95 60 0 494 588 650 744 1.68e-11 68.2
MsG0180000220.01.T01 AT3G25510 38.947 95 58 0 494 588 674 768 7.15e-11 66.2
MsG0180000220.01.T01 AT3G25510 35.507 138 80 2 453 588 566 696 9.59e-14 75.5
MsG0180000220.01.T01 AT3G25510 36.842 95 60 0 494 588 650 744 1.68e-11 68.2
MsG0180000220.01.T01 AT3G25510 38.947 95 58 0 494 588 674 768 7.15e-11 66.2
MsG0180000220.01.T01 AT2G14080 34.615 156 85 2 431 586 567 705 2.05e-13 74.3
MsG0180000220.01.T01 AT2G14080 34.615 156 85 2 431 586 700 838 2.64e-13 73.9
MsG0180000220.01.T01 AT1G69550 33.951 162 92 3 439 589 871 1028 2.97e-13 73.9
MsG0180000220.01.T01 AT1G69550 38.462 104 63 1 486 589 950 1052 1.08e-12 72.0
MsG0180000220.01.T01 AT1G69550 41.053 95 56 0 494 588 1005 1099 3.51e-12 70.5
MsG0180000220.01.T01 AT1G69550 38.542 96 59 0 494 589 1100 1195 1.09e-11 68.9
MsG0180000220.01.T01 AT1G69550 38.462 104 63 1 486 589 974 1076 1.64e-11 68.2
MsG0180000220.01.T01 AT1G69550 34.337 166 95 3 439 594 1063 1224 1.79e-11 68.2
MsG0180000220.01.T01 AT1G69550 36.458 96 61 0 494 589 717 812 7.53e-11 66.2
MsG0180000220.01.T01 AT1G65850 25.000 416 241 14 230 583 362 768 5.79e-13 72.8
MsG0180000220.01.T01 AT1G65850 25.000 416 241 14 230 583 252 658 6.62e-13 72.4
MsG0180000220.01.T01 AT1G65850 25.000 416 241 14 230 583 377 783 6.69e-13 72.8
MsG0180000220.01.T01 AT5G11250 40.860 93 55 0 494 586 665 757 6.41e-12 69.3
MsG0180000220.01.T01 AT5G11250 40.860 93 55 0 494 586 665 757 6.41e-12 69.3
MsG0180000220.01.T01 AT5G11250 40.860 93 55 0 494 586 747 839 6.55e-12 69.3
MsG0180000220.01.T01 AT3G44480 34.426 122 57 1 494 592 738 859 1.08e-11 68.9
MsG0180000220.01.T01 AT3G44480 34.426 122 57 1 494 592 738 859 1.17e-11 68.6
MsG0180000220.01.T01 AT3G44480 34.426 122 57 1 494 592 738 859 1.17e-11 68.6
MsG0180000220.01.T01 AT3G44480 34.426 122 57 1 494 592 738 859 1.18e-11 68.6
MsG0180000220.01.T01 AT3G44480 34.426 122 57 1 494 592 738 859 1.18e-11 68.6
MsG0180000220.01.T01 AT3G04220 33.684 95 63 0 494 588 716 810 2.45e-11 67.4
MsG0180000220.01.T01 AT3G04220 33.684 95 63 0 494 588 745 839 2.85e-11 67.4
MsG0180000220.01.T01 AT3G44630 40.000 95 56 1 494 588 787 880 2.91e-11 67.4
MsG0180000220.01.T01 AT3G44630 40.000 95 56 1 494 588 787 880 2.91e-11 67.4
MsG0180000220.01.T01 AT3G44630 40.000 95 56 1 494 588 787 880 2.91e-11 67.4
MsG0180000220.01.T01 AT3G44630 40.000 95 56 1 494 588 787 880 3.27e-11 67.4
MsG0180000220.01.T01 AT5G44510 39.583 96 58 0 494 589 681 776 3.44e-11 67.0
MsG0180000220.01.T01 AT5G44510 39.583 96 58 0 494 589 681 776 3.44e-11 67.0
MsG0180000220.01.T01 AT5G44510 39.583 96 58 0 494 589 681 776 3.52e-11 67.0
MsG0180000220.01.T01 AT5G44510 39.583 96 58 0 494 589 681 776 3.57e-11 67.0

Find 134 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGTAGTTTGGGGAATT+TGG 0.105066 1:-3030702 MsG0180000220.01.T01:CDS
ACCATTAATGCTCTCAATTT+TGG 0.118203 1:+3028723 None:intergenic
GGGAATTTGGATTTGAGTTT+TGG 0.188714 1:-3030689 MsG0180000220.01.T01:CDS
GCCAAAATTGAGAGCATTAA+TGG 0.195799 1:-3028724 MsG0180000220.01.T01:intron
TTCCACAGTTGCTCAGATTA+AGG 0.211814 1:+3029059 None:intergenic
CAACATTAGGCTTGACCTTC+TGG 0.213142 1:+3028081 None:intergenic
GGAGGAAGTGTTCTCAAATT+TGG 0.214963 1:+3028319 None:intergenic
ATAATCAGCACTTCAGCTTT+AGG 0.223315 1:+3028795 None:intergenic
TGAGGAAGATGAGGGTAGTT+TGG 0.253557 1:-3030711 MsG0180000220.01.T01:CDS
ACACGATTACCTGTTGAATT+AGG 0.265942 1:-3028382 MsG0180000220.01.T01:CDS
ATTTGTGGGATGGGTGGATC+TGG 0.274418 1:-3030600 MsG0180000220.01.T01:CDS
GTTTCCATCCCACAGTTATC+AGG 0.312070 1:-3028613 MsG0180000220.01.T01:intron
GAGATCAAAATGAAATGTTT+TGG 0.312611 1:-3029523 MsG0180000220.01.T01:CDS
TTGTTCTGTCACCACGCTTT+CGG 0.315327 1:-3029738 MsG0180000220.01.T01:CDS
TTTGGAGTTTGGGAAGAATA+AGG 0.316512 1:-3030666 MsG0180000220.01.T01:CDS
GAGGAAGATGAGGGTAGTTT+GGG 0.320994 1:-3030710 MsG0180000220.01.T01:CDS
GCATATCTCAGCCATTCTTT+AGG 0.324905 1:+3028980 None:intergenic
TGGTGGTGTTGGGTGGGTTG+AGG 0.349474 1:-3030750 MsG0180000220.01.T01:CDS
TTGCTGATGTTAACCATGTA+AGG 0.366175 1:-3030856 MsG0180000220.01.T01:CDS
CAAGAATCTCCTCACCTTAG+TGG 0.370160 1:-3029259 MsG0180000220.01.T01:CDS
TCCACAGTTGCTCAGATTAA+GGG 0.370893 1:+3029060 None:intergenic
GTGGTGATGACGGCGGCGTT+TGG 0.372274 1:+3031387 None:intergenic
AAGATTGGAGTTGGTGGTGT+TGG 0.376358 1:-3030761 MsG0180000220.01.T01:CDS
AACTGTCACACAAATCTTGC+AGG 0.376873 1:-3031051 MsG0180000220.01.T01:intron
GAAGAATAAGGTTATGGAAA+TGG 0.378092 1:-3030654 MsG0180000220.01.T01:CDS
AACTTATAAAGTTGAATTGT+TGG 0.380894 1:-3029781 MsG0180000220.01.T01:CDS
ACAACTTGAATATCAACATT+AGG 0.382197 1:+3028068 None:intergenic
TGTCCGTTATCTTCTCGTTT+CGG 0.386027 1:+3029007 None:intergenic
ATCAATCAGATTATGTTCAT+AGG 0.386908 1:+3029454 None:intergenic
GTTTGGGAAGAATAAGGTTA+TGG 0.392947 1:-3030660 MsG0180000220.01.T01:CDS
AGATTGGAGTTGGTGGTGTT+GGG 0.395166 1:-3030760 MsG0180000220.01.T01:CDS
TGGAGTTGGTGGTGTTGGGT+GGG 0.396473 1:-3030756 MsG0180000220.01.T01:CDS
AGTTACCTTCAAGCATTTGC+AGG 0.398279 1:-3028450 MsG0180000220.01.T01:CDS
ACCAACTTACCAATCGCGTC+AGG 0.402459 1:+3028229 None:intergenic
GTTGTTGGAATTTGTGGGAT+GGG 0.404787 1:-3030609 MsG0180000220.01.T01:CDS
ACTTATAAAGTTGAATTGTT+GGG 0.406639 1:-3029780 MsG0180000220.01.T01:CDS
TTGGAGTTGGTGGTGTTGGG+TGG 0.409655 1:-3030757 MsG0180000220.01.T01:CDS
ACCACCACCAATGGCGTTAA+CGG 0.410442 1:-3031366 MsG0180000220.01.T01:exon
TAATCAGAATTTAGTCAAAC+AGG 0.411774 1:-3029691 MsG0180000220.01.T01:intron
CCACTAGCTCTTGAAGTGAT+TGG 0.415584 1:-3029557 MsG0180000220.01.T01:CDS
AGCGACTAGTAGCGAGGGCT+TGG 0.426062 1:+3031126 None:intergenic
CTTTCTCAAGGGTTAAGTAT+AGG 0.428688 1:-3029482 MsG0180000220.01.T01:CDS
CCCTGACGCGATTGGTAAGT+TGG 0.433685 1:-3028230 MsG0180000220.01.T01:intron
CTTAGTGAGCCTAATTCAAC+AGG 0.438291 1:+3028373 None:intergenic
ACATAATCTGATTGATAGAA+TGG 0.439046 1:-3029447 MsG0180000220.01.T01:CDS
TTTGTGTTGTTGGAATTTGT+GGG 0.449605 1:-3030614 MsG0180000220.01.T01:CDS
AGCGTGAGCTCTGAGATGTT+AGG 0.453444 1:+3028496 None:intergenic
CTTTCAGCTTGCGAAGAAGA+TGG 0.455808 1:-3031087 MsG0180000220.01.T01:CDS
CAATTTGAGCTTCGAACGGT+TGG 0.464705 1:+3028954 None:intergenic
ACCGGATTGAGGAGTCGAAC+CGG 0.465722 1:-3030811 MsG0180000220.01.T01:CDS
GTTGGAATTTGTGGGATGGG+TGG 0.465992 1:-3030606 MsG0180000220.01.T01:CDS
CGGCGTTTGGCGCCACCGGT+TGG 0.466551 1:+3031400 None:intergenic
TATTTGATTTGTTCAATTGT+TGG 0.469023 1:+3031233 None:intergenic
GTTTCGGCATAACTAATCTT+CGG 0.475963 1:+3029023 None:intergenic
CTCTCCGAGATTCTCCGCTC+TGG 0.479974 1:-3031164 MsG0180000220.01.T01:CDS
GGAGGGATGAAGATTGGAGT+TGG 0.481119 1:-3030770 MsG0180000220.01.T01:CDS
TTTGTGGGATGGGTGGATCT+GGG 0.481462 1:-3030599 MsG0180000220.01.T01:CDS
ACGGCGGCGTTTGGCGCCAC+CGG 0.482824 1:+3031396 None:intergenic
TGGAAGAATTTCGCGGATGA+AGG 0.485465 1:+3031253 None:intergenic
GCGTGAGCTCTGAGATGTTA+GGG 0.487089 1:+3028497 None:intergenic
TGTTGTTGGAATTTGTGGGA+TGG 0.489522 1:-3030610 MsG0180000220.01.T01:CDS
TCCGGTTCGACTCCTCAATC+CGG 0.489740 1:+3030810 None:intergenic
TCCGTTAACGCCATTGGTGG+TGG 0.491423 1:+3031365 None:intergenic
TGTATCCTGCAAATGCTTGA+AGG 0.491732 1:+3028445 None:intergenic
AGGAATAGTGAGGAAGATGA+GGG 0.492394 1:-3030719 MsG0180000220.01.T01:CDS
AGATGACGGAGCGATTTGAC+CGG 0.500985 1:-3030829 MsG0180000220.01.T01:CDS
GACGCCAGAGCGGAGAATCT+CGG 0.501164 1:+3031160 None:intergenic
GAGGAATAGTGAGGAAGATG+AGG 0.507350 1:-3030720 MsG0180000220.01.T01:CDS
ATGAGGAAGTGTCTTGGATG+TGG 0.513609 1:-3028112 MsG0180000220.01.T01:CDS
GCAAGCTTCCCTGACGCGAT+TGG 0.514447 1:-3028238 MsG0180000220.01.T01:CDS
AGATGAGATTGTCTCGGCGG+CGG 0.521199 1:+3031194 None:intergenic
ATTGGTGGTGGTGGTGATGA+CGG 0.521669 1:+3031377 None:intergenic
CCGTCATCTCAGCCCTTACA+TGG 0.525262 1:+3030843 None:intergenic
TAAGATATCTAGAGATTCTA+CGG 0.526425 1:-3028354 MsG0180000220.01.T01:CDS
GGGATGAAGATTGGAGTTGG+TGG 0.528038 1:-3030767 MsG0180000220.01.T01:CDS
GGAGCGATTTGACCGGATTG+AGG 0.528474 1:-3030822 MsG0180000220.01.T01:CDS
CCATGTAAGGGCTGAGATGA+CGG 0.532305 1:-3030843 MsG0180000220.01.T01:CDS
TCTCCTCACCTTAGTGGAAG+AGG 0.532459 1:-3029253 MsG0180000220.01.T01:CDS
TGAGGAGTCGAACCGGAGGA+TGG 0.539431 1:-3030804 MsG0180000220.01.T01:CDS
GTTAACGCCATTGGTGGTGG+TGG 0.540000 1:+3031368 None:intergenic
AAACTGTAATCATCACCAAC+CGG 0.541708 1:-3031415 MsG0180000220.01.T01:five_prime_UTR
ACGGACAGCTTCCTAAAGAA+TGG 0.542134 1:-3028991 MsG0180000220.01.T01:CDS
GGGAGGTAAGAAGTATTCAC+TGG 0.544973 1:+3028761 None:intergenic
GTTAAAACAAGACTTTCTCA+AGG 0.548391 1:-3029494 MsG0180000220.01.T01:CDS
AAGTCCGTTAACGCCATTGG+TGG 0.551964 1:+3031362 None:intergenic
TCGCGTCAGGGAAGCTTGCA+AGG 0.553997 1:+3028242 None:intergenic
GATGAAGGTTAAGAGCTGTT+CGG 0.554255 1:+3031268 None:intergenic
TTTGGCATTCTATTTATGAA+GGG 0.554819 1:+3028741 None:intergenic
CTAGTCATTCCACAGATGCT+AGG 0.556796 1:+3028298 None:intergenic
AAGCCCTCGCTACTAGTCGC+TGG 0.558140 1:-3031124 MsG0180000220.01.T01:CDS
GGCATTCTATTTATGAAGGG+AGG 0.559819 1:+3028744 None:intergenic
TTAAAACAAGACTTTCTCAA+GGG 0.560497 1:-3029493 MsG0180000220.01.T01:CDS
TTGATTTCTGTCCGAAAGCG+TGG 0.564006 1:+3029727 None:intergenic
GGAAGCTGTGAGGAATAGTG+AGG 0.567932 1:-3030729 MsG0180000220.01.T01:CDS
CCAATCACTTCAAGAGCTAG+TGG 0.570798 1:+3029557 None:intergenic
AACTGTTGTTAATCTTACAA+AGG 0.573797 1:+3028554 None:intergenic
GTCATCACCACCACCACCAA+TGG 0.575329 1:-3031375 MsG0180000220.01.T01:exon
GAAACAATTTGAGCTTCGAA+CGG 0.576262 1:+3028950 None:intergenic
ATACCGTGCCTCTTCCACTA+AGG 0.576991 1:+3029245 None:intergenic
AGATTGAATATGATCTAGAC+TGG 0.580515 1:-3028043 MsG0180000220.01.T01:CDS
TTTGTGATGAGGAAGTGTCT+TGG 0.580853 1:-3028118 MsG0180000220.01.T01:CDS
CAAATTGTTTCAATTCACAC+TGG 0.582955 1:-3028938 MsG0180000220.01.T01:intron
AAATTCTGATTAGCTGCGAA+AGG 0.589207 1:+3029702 None:intergenic
ACAGTTATCAGGCATAGTCA+TGG 0.596792 1:-3028602 MsG0180000220.01.T01:intron
ATTGAACAAATCAAATACTC+CGG 0.597243 1:-3031227 MsG0180000220.01.T01:CDS
GCAAATGCTTGAAGGTAACT+CGG 0.604045 1:+3028453 None:intergenic
ACACTTCCTCCTAGCATCTG+TGG 0.606268 1:-3028307 MsG0180000220.01.T01:CDS
ATGCCGAAACGAGAAGATAA+CGG 0.607077 1:-3029010 MsG0180000220.01.T01:CDS
GTACAGGTTGTGGCTGAATG+TGG 0.610803 1:-3029587 MsG0180000220.01.T01:intron
CGATCAAGATGAGATTGTCT+CGG 0.611758 1:+3031188 None:intergenic
GCATAGTCATGGAAAGCTTG+AGG 0.614589 1:-3028591 MsG0180000220.01.T01:CDS
CGGCGGCGGAAGTTCGACGC+CGG 0.618536 1:+3031208 None:intergenic
CAATTGTTGGAAGAATTTCG+CGG 0.622864 1:+3031246 None:intergenic
AGTCGAACCGGAGGATGGAG+CGG 0.628380 1:-3030799 MsG0180000220.01.T01:CDS
CCAACTTACCAATCGCGTCA+GGG 0.633683 1:+3028230 None:intergenic
GCAAGTATATAAGCTTGCAT+CGG 0.635351 1:+3030875 None:intergenic
GTCATTCCACAGATGCTAGG+AGG 0.635549 1:+3028301 None:intergenic
AGCAGAAGCATATGCTATTG+TGG 0.636688 1:-3029295 MsG0180000220.01.T01:intron
TGCTGATGTTAACCATGTAA+GGG 0.638564 1:-3030855 MsG0180000220.01.T01:CDS
GTTCCAGCGACTAGTAGCGA+GGG 0.643096 1:+3031121 None:intergenic
TCACCTTAGTGGAAGAGGCA+CGG 0.644799 1:-3029248 MsG0180000220.01.T01:intron
GGATTGAGGAGTCGAACCGG+AGG 0.653814 1:-3030808 MsG0180000220.01.T01:CDS
GCAGCTTGTAATTTGTGATG+AGG 0.654077 1:-3028129 MsG0180000220.01.T01:intron
AGGAAGATGAGGGTAGTTTG+GGG 0.661581 1:-3030709 MsG0180000220.01.T01:CDS
CGTTCCAGCGACTAGTAGCG+AGG 0.662426 1:+3031120 None:intergenic
GCCCTTAATCTGAGCAACTG+TGG 0.666957 1:-3029061 MsG0180000220.01.T01:CDS
GATGTGGAAAGAAGTCCAGA+AGG 0.668014 1:-3028096 MsG0180000220.01.T01:CDS
GTGCCTCTTCCACTAAGGTG+AGG 0.670033 1:+3029250 None:intergenic
GGTGGGTTGAGGAAGCTGTG+AGG 0.693078 1:-3030739 MsG0180000220.01.T01:CDS
GGTGGTGGTGGTGATGACGG+CGG 0.696582 1:+3031380 None:intergenic
CTGTAATCATCACCAACCGG+TGG 0.700649 1:-3031412 MsG0180000220.01.T01:five_prime_UTR
GAGAAAGCTCGACGCCAGAG+CGG 0.711773 1:+3031150 None:intergenic
TCAAGATGAGATTGTCTCGG+CGG 0.715540 1:+3031191 None:intergenic
GCTCACGCTTGATCACTGTG+AGG 0.769242 1:-3028482 MsG0180000220.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTGCATTAAAAAT+GGG + Chr1:3029660-3029679 None:intergenic 15.0%
!! TTCATAATTTATGATTGTAA+TGG - Chr1:3029008-3029027 MsG0180000220.01.T01:CDS 15.0%
!! TTTATAAGTTGCATTAAAAA+TGG + Chr1:3029661-3029680 None:intergenic 15.0%
!! AAAAGTAAAAAATGCCAAAA+GGG + Chr1:3030301-3030320 None:intergenic 20.0%
!! AACTTATAAAGTTGAATTGT+TGG - Chr1:3029671-3029690 MsG0180000220.01.T01:intron 20.0%
!! ACTTATAAAGTTGAATTGTT+GGG - Chr1:3029672-3029691 MsG0180000220.01.T01:intron 20.0%
!! AGTAAATAATGTGTTTCAAA+AGG - Chr1:3029275-3029294 MsG0180000220.01.T01:CDS 20.0%
!! TATAAGTTGCATTAAAAATG+GGG + Chr1:3029659-3029678 None:intergenic 20.0%
!!! AAAGGTTTTAACTTTTTGTT+TGG - Chr1:3029293-3029312 MsG0180000220.01.T01:CDS 20.0%
!!! ATAACACATCACTTTATTTA+TGG + Chr1:3029845-3029864 None:intergenic 20.0%
!!! TAATCTATTTTTACCATGTA+GGG - Chr1:3028954-3028973 MsG0180000220.01.T01:CDS 20.0%
!!! TATTTGATTTGTTCAATTGT+TGG + Chr1:3028222-3028241 None:intergenic 20.0%
! AACTGTTGTTAATCTTACAA+AGG + Chr1:3030901-3030920 None:intergenic 25.0%
! AATTTAGAGAAATTGACATG+AGG - Chr1:3031247-3031266 MsG0180000220.01.T01:CDS 25.0%
! ACAACTTGAATATCAACATT+AGG + Chr1:3031387-3031406 None:intergenic 25.0%
! ACATAATCTGATTGATAGAA+TGG - Chr1:3030005-3030024 MsG0180000220.01.T01:intron 25.0%
! ATCAATCAGATTATGTTCAT+AGG + Chr1:3030001-3030020 None:intergenic 25.0%
! ATTGAACAAATCAAATACTC+CGG - Chr1:3028225-3028244 MsG0180000220.01.T01:intron 25.0%
! ATTTAGAGAAATTGACATGA+GGG - Chr1:3031248-3031267 MsG0180000220.01.T01:CDS 25.0%
! GAAAAGTAAAAAATGCCAAA+AGG + Chr1:3030302-3030321 None:intergenic 25.0%
! TAAGATATCTAGAGATTCTA+CGG - Chr1:3031098-3031117 MsG0180000220.01.T01:CDS 25.0%
! TAATCAGAATTTAGTCAAAC+AGG - Chr1:3029761-3029780 MsG0180000220.01.T01:CDS 25.0%
! TTAAAACAAGACTTTCTCAA+GGG - Chr1:3029959-3029978 MsG0180000220.01.T01:intron 25.0%
! TTCGGTATATTTGTAATCAT+TGG + Chr1:3031279-3031298 None:intergenic 25.0%
! TTTGGCATTCTATTTATGAA+GGG + Chr1:3030714-3030733 None:intergenic 25.0%
!! AGAAGTTCTAATCAATATGT+GGG - Chr1:3030112-3030131 MsG0180000220.01.T01:intron 25.0%
!! ATATTGATTAGAACTTCTAG+AGG + Chr1:3030110-3030129 None:intergenic 25.0%
!! ATTAGCTTAAATATTGTTGC+AGG - Chr1:3028552-3028571 MsG0180000220.01.T01:CDS 25.0%
!! GAGATCAAAATGAAATGTTT+TGG - Chr1:3029929-3029948 MsG0180000220.01.T01:intron 25.0%
!! TAGAAGTTCTAATCAATATG+TGG - Chr1:3030111-3030130 MsG0180000220.01.T01:intron 25.0%
!! TTTAGAATAATGATCAAGCA+AGG + Chr1:3030277-3030296 None:intergenic 25.0%
!! TTTTGGCATTCTATTTATGA+AGG + Chr1:3030715-3030734 None:intergenic 25.0%
!!! AAGATTAACAACAGTTTTGA+AGG - Chr1:3030905-3030924 MsG0180000220.01.T01:intron 25.0%
!!! CTAATCTATTTTTACCATGT+AGG - Chr1:3028953-3028972 MsG0180000220.01.T01:CDS 25.0%
!!! TATGAGCAAAGTGTTTTAAA+AGG - Chr1:3029337-3029356 MsG0180000220.01.T01:intron 25.0%
!!! TCATTATTCTAAAACCCTTT+TGG - Chr1:3030284-3030303 MsG0180000220.01.T01:intron 25.0%
!!! TTGTCTTATTGATTTGTTCT+TGG - Chr1:3029084-3029103 MsG0180000220.01.T01:CDS 25.0%
AAAAAGTGACTGGTGTAATT+TGG - Chr1:3030629-3030648 MsG0180000220.01.T01:CDS 30.0%
AGATTGAATATGATCTAGAC+TGG - Chr1:3031409-3031428 MsG0180000220.01.T01:five_prime_UTR 30.0%
ATCCAGAATAACAAGATTTG+AGG + Chr1:3029553-3029572 None:intergenic 30.0%
CAAATTGTTTCAATTCACAC+TGG - Chr1:3030514-3030533 MsG0180000220.01.T01:intron 30.0%
GAAGAATAAGGTTATGGAAA+TGG - Chr1:3028798-3028817 MsG0180000220.01.T01:CDS 30.0%
GAATTTAGTCAAACAGGTAA+TGG - Chr1:3029767-3029786 MsG0180000220.01.T01:CDS 30.0%
GATTACAAATATACCGAAGT+CGG - Chr1:3031281-3031300 MsG0180000220.01.T01:CDS 30.0%
GTTAAAACAAGACTTTCTCA+AGG - Chr1:3029958-3029977 MsG0180000220.01.T01:intron 30.0%
TAAAGTGATGTGTTATGTAC+AGG - Chr1:3029849-3029868 MsG0180000220.01.T01:intron 30.0%
TTCAAGAATTTACCAACTTG+AGG - Chr1:3030798-3030817 MsG0180000220.01.T01:CDS 30.0%
TTGTGAATTAATCCAACTTC+TGG - Chr1:3029217-3029236 MsG0180000220.01.T01:intron 30.0%
! AATCTTTTTATCCTCAGGAA+AGG + Chr1:3030087-3030106 None:intergenic 30.0%
! ACCATTAATGCTCTCAATTT+TGG + Chr1:3030732-3030751 None:intergenic 30.0%
! ATAGCTAAATGGTTAGTTGT+TGG - Chr1:3029179-3029198 MsG0180000220.01.T01:intron 30.0%
! GTTATGGAAATGGTTTTTGA+AGG - Chr1:3028808-3028827 MsG0180000220.01.T01:CDS 30.0%
! TTTGTGTTGTTGGAATTTGT+GGG - Chr1:3028838-3028857 MsG0180000220.01.T01:intron 30.0%
!! TTGCAGGCTATTTTAAAGAA+AGG - Chr1:3029383-3029402 MsG0180000220.01.T01:intron 30.0%
!! TTTTGTGTTGTTGGAATTTG+TGG - Chr1:3028837-3028856 MsG0180000220.01.T01:intron 30.0%
!!! CATTTTTTACTTTTCAGTGC+TGG - Chr1:3030307-3030326 MsG0180000220.01.T01:intron 30.0%
!!! TGGAAACTTTTTCAAACCAA+AGG + Chr1:3030826-3030845 None:intergenic 30.0%
!!! TTGGTGATGATTACAGTTTT+TGG + Chr1:3028036-3028055 None:intergenic 30.0%
!!! TTTCAACATTTGCTTTTTGC+AGG - Chr1:3029367-3029386 MsG0180000220.01.T01:intron 30.0%
!!! TTTGGATTTGAGTTTTGGTT+TGG - Chr1:3028768-3028787 MsG0180000220.01.T01:CDS 30.0%
!!! TTTGTTTGGCTTTGTTTTGA+TGG - Chr1:3029307-3029326 MsG0180000220.01.T01:intron 30.0%
!!! TTTTTTCCTGTGAAGAGTTA+TGG - Chr1:3028112-3028131 MsG0180000220.01.T01:CDS 30.0%
AAAAATGGGGAATATGAACC+TGG + Chr1:3029646-3029665 None:intergenic 35.0%
AAACTGTAATCATCACCAAC+CGG - Chr1:3028037-3028056 MsG0180000220.01.T01:CDS 35.0%
AAAGATTTGGGGACACATAA+TGG - Chr1:3029456-3029475 MsG0180000220.01.T01:CDS 35.0%
AACCATTTAGCTATTCGAAG+AGG + Chr1:3029173-3029192 None:intergenic 35.0%
AAGATTTGGGGACACATAAT+GGG - Chr1:3029457-3029476 MsG0180000220.01.T01:CDS 35.0%
ACACGATTACCTGTTGAATT+AGG - Chr1:3031070-3031089 MsG0180000220.01.T01:CDS 35.0%
ACCACAATGAACTTGCAATT+AGG + Chr1:3029621-3029640 None:intergenic 35.0%
ACCATTTAGCTATTCGAAGA+GGG + Chr1:3029172-3029191 None:intergenic 35.0%
AGAAACACTCCTTGATCTTT+CGG + Chr1:3030052-3030071 None:intergenic 35.0%
ATAATCAGCACTTCAGCTTT+AGG + Chr1:3030660-3030679 None:intergenic 35.0%
ATTACTTACCCGAAAGATCA+AGG - Chr1:3030040-3030059 MsG0180000220.01.T01:intron 35.0%
CAATAATTAACCACCCTACA+TGG + Chr1:3028970-3028989 None:intergenic 35.0%
CAATTGTTGGAAGAATTTCG+CGG + Chr1:3028209-3028228 None:intergenic 35.0%
CGACAAGTTTGTAACATCAA+TGG - Chr1:3029129-3029148 MsG0180000220.01.T01:CDS 35.0%
CTTCTGCTTCATGAATATCA+TGG + Chr1:3030145-3030164 None:intergenic 35.0%
CTTTCTCAAGGGTTAAGTAT+AGG - Chr1:3029970-3029989 MsG0180000220.01.T01:intron 35.0%
GAAACAATTTGAGCTTCGAA+CGG + Chr1:3030505-3030524 None:intergenic 35.0%
GCAAGTATATAAGCTTGCAT+CGG + Chr1:3028580-3028599 None:intergenic 35.0%
GTCGTCATCATCATCAAAAA+TGG + Chr1:3029113-3029132 None:intergenic 35.0%
GTGAAATGAGAAAAAGTGAC+TGG - Chr1:3030619-3030638 MsG0180000220.01.T01:CDS 35.0%
GTTTCGGCATAACTAATCTT+CGG + Chr1:3030432-3030451 None:intergenic 35.0%
GTTTGGGAAGAATAAGGTTA+TGG - Chr1:3028792-3028811 MsG0180000220.01.T01:CDS 35.0%
TCAGCTAAATTACCAGAAGT+TGG + Chr1:3029232-3029251 None:intergenic 35.0%
TGCTCGTCTTCACAATATAT+CGG - Chr1:3030773-3030792 MsG0180000220.01.T01:CDS 35.0%
TGCTGATGTTAACCATGTAA+GGG - Chr1:3028597-3028616 MsG0180000220.01.T01:CDS 35.0%
TGTGATGAATTTCACATTGC+AGG - Chr1:3030597-3030616 MsG0180000220.01.T01:CDS 35.0%
TTCTGGTAATTTAGCTGAGA+GGG - Chr1:3029234-3029253 MsG0180000220.01.T01:intron 35.0%
TTGCTGATGTTAACCATGTA+AGG - Chr1:3028596-3028615 MsG0180000220.01.T01:CDS 35.0%
! AAATTCTGATTAGCTGCGAA+AGG + Chr1:3029753-3029772 None:intergenic 35.0%
! AGAATAACAAGATTTGAGGC+TGG + Chr1:3029549-3029568 None:intergenic 35.0%
! AGAGGAATCTTTTTATCCTC+AGG + Chr1:3030092-3030111 None:intergenic 35.0%
! AGGAAGGATTTTTGTGTTGT+TGG - Chr1:3028828-3028847 MsG0180000220.01.T01:CDS 35.0%
! CATTTTCCATAACTCTTCAC+AGG + Chr1:3028121-3028140 None:intergenic 35.0%
! TTGTTATTCTGGATGATGTG+TGG - Chr1:3029559-3029578 MsG0180000220.01.T01:CDS 35.0%
! TTTGGAGTTTGGGAAGAATA+AGG - Chr1:3028786-3028805 MsG0180000220.01.T01:CDS 35.0%
!! AAAGATCAAGGAGTGTTTCT+TGG - Chr1:3030052-3030071 MsG0180000220.01.T01:intron 35.0%
!! AGCCTCAAATCTTGTTATTC+TGG - Chr1:3029548-3029567 MsG0180000220.01.T01:CDS 35.0%
!! GCCAAAATTGAGAGCATTAA+TGG - Chr1:3030728-3030747 MsG0180000220.01.T01:CDS 35.0%
!! GGGAATTTGGATTTGAGTTT+TGG - Chr1:3028763-3028782 MsG0180000220.01.T01:CDS 35.0%
!! TGGAAATGGTTTTTGAAGGA+AGG - Chr1:3028812-3028831 MsG0180000220.01.T01:CDS 35.0%
!! TTTTTACTTTTCAGTGCTGG+TGG - Chr1:3030310-3030329 MsG0180000220.01.T01:intron 35.0%
!!! TCTATTTTTACCATGTAGGG+TGG - Chr1:3028957-3028976 MsG0180000220.01.T01:CDS 35.0%
!!! TGAGTTTTGGTTTGGAGTTT+GGG - Chr1:3028776-3028795 MsG0180000220.01.T01:CDS 35.0%
!!! TTGAGTTTTGGTTTGGAGTT+TGG - Chr1:3028775-3028794 MsG0180000220.01.T01:CDS 35.0%
!!! TTTTTTGGAGGGATGAAGAT+TGG - Chr1:3028676-3028695 MsG0180000220.01.T01:intron 35.0%
AAAAAGTCCGTTAACGCCAT+TGG + Chr1:3028096-3028115 None:intergenic 40.0%
AACTGTCACACAAATCTTGC+AGG - Chr1:3028401-3028420 MsG0180000220.01.T01:CDS 40.0%
AAGCTGCAATATGAATGCAG+CGG - Chr1:3029520-3029539 MsG0180000220.01.T01:CDS 40.0%
ACAGTTATCAGGCATAGTCA+TGG - Chr1:3030850-3030869 MsG0180000220.01.T01:CDS 40.0%
AGGAATAGTGAGGAAGATGA+GGG - Chr1:3028733-3028752 MsG0180000220.01.T01:CDS 40.0%
AGTTACCTTCAAGCATTTGC+AGG - Chr1:3031002-3031021 MsG0180000220.01.T01:intron 40.0%
ATGACTATGCCTGATAACTG+TGG + Chr1:3030851-3030870 None:intergenic 40.0%
ATGCCGAAACGAGAAGATAA+CGG - Chr1:3030442-3030461 MsG0180000220.01.T01:intron 40.0%
CCAATTATGTTGTTCCTCAG+TGG - Chr1:3029497-3029516 MsG0180000220.01.T01:CDS 40.0%
CCACTGAGGAACAACATAAT+TGG + Chr1:3029500-3029519 None:intergenic 40.0%
CGATCAAGATGAGATTGTCT+CGG + Chr1:3028267-3028286 None:intergenic 40.0%
CTTAGTGAGCCTAATTCAAC+AGG + Chr1:3031082-3031101 None:intergenic 40.0%
CTTCTGGTAATTTAGCTGAG+AGG - Chr1:3029233-3029252 MsG0180000220.01.T01:intron 40.0%
GAAACACTCCTTGATCTTTC+GGG + Chr1:3030051-3030070 None:intergenic 40.0%
GATGAAGGTTAAGAGCTGTT+CGG + Chr1:3028187-3028206 None:intergenic 40.0%
GATGTGTTATGTACAGGTTG+TGG - Chr1:3029855-3029874 MsG0180000220.01.T01:intron 40.0%
GCAAATGCTTGAAGGTAACT+CGG + Chr1:3031002-3031021 None:intergenic 40.0%
GCATATCTCAGCCATTCTTT+AGG + Chr1:3030475-3030494 None:intergenic 40.0%
GCCTAATTGCAAGTTCATTG+TGG - Chr1:3029617-3029636 MsG0180000220.01.T01:intron 40.0%
GGCATTCTATTTATGAAGGG+AGG + Chr1:3030711-3030730 None:intergenic 40.0%
GTTGTTGGAATTTGTGGGAT+GGG - Chr1:3028843-3028862 MsG0180000220.01.T01:intron 40.0%
TCCACAGTTGCTCAGATTAA+GGG + Chr1:3030395-3030414 None:intergenic 40.0%
TGACTATGCCTGATAACTGT+GGG + Chr1:3030850-3030869 None:intergenic 40.0%
TGTATCCTGCAAATGCTTGA+AGG + Chr1:3031010-3031029 None:intergenic 40.0%
TGTCCGTTATCTTCTCGTTT+CGG + Chr1:3030448-3030467 None:intergenic 40.0%
TGTTGTTGGAATTTGTGGGA+TGG - Chr1:3028842-3028861 MsG0180000220.01.T01:intron 40.0%
TTCCACAGTTGCTCAGATTA+AGG + Chr1:3030396-3030415 None:intergenic 40.0%
! AGCAGAAGCATATGCTATTG+TGG - Chr1:3030157-3030176 MsG0180000220.01.T01:intron 40.0%
! GCAGCTTGTAATTTGTGATG+AGG - Chr1:3031323-3031342 MsG0180000220.01.T01:CDS 40.0%
!! GGAGGAAGTGTTCTCAAATT+TGG + Chr1:3031136-3031155 None:intergenic 40.0%
!! TTCAATGACAATGCCGACTT+CGG + Chr1:3031297-3031316 None:intergenic 40.0%
!! TTTGTGATGAGGAAGTGTCT+TGG - Chr1:3031334-3031353 MsG0180000220.01.T01:CDS 40.0%
AAACCAAAGGCTCCTCAAGT+TGG + Chr1:3030813-3030832 None:intergenic 45.0%
ACGGACAGCTTCCTAAAGAA+TGG - Chr1:3030461-3030480 MsG0180000220.01.T01:intron 45.0%
AGCTGCAATATGAATGCAGC+GGG - Chr1:3029521-3029540 MsG0180000220.01.T01:CDS 45.0%
AGGAAGATGAGGGTAGTTTG+GGG - Chr1:3028743-3028762 MsG0180000220.01.T01:CDS 45.0%
CAACATTAGGCTTGACCTTC+TGG + Chr1:3031374-3031393 None:intergenic 45.0%
CAAGAATCTCCTCACCTTAG+TGG - Chr1:3030193-3030212 MsG0180000220.01.T01:intron 45.0%
CAATTTGAGCTTCGAACGGT+TGG + Chr1:3030501-3030520 None:intergenic 45.0%
CCAATCACTTCAAGAGCTAG+TGG + Chr1:3029898-3029917 None:intergenic 45.0%
CTAGTCATTCCACAGATGCT+AGG + Chr1:3031157-3031176 None:intergenic 45.0%
CTTTCAGCTTGCGAAGAAGA+TGG - Chr1:3028365-3028384 MsG0180000220.01.T01:CDS 45.0%
GAGGAAGATGAGGGTAGTTT+GGG - Chr1:3028742-3028761 MsG0180000220.01.T01:CDS 45.0%
GAGGAATAGTGAGGAAGATG+AGG - Chr1:3028732-3028751 MsG0180000220.01.T01:CDS 45.0%
GATGTGGAAAGAAGTCCAGA+AGG - Chr1:3031356-3031375 MsG0180000220.01.T01:CDS 45.0%
GCAAGTTCATTGTGGTTTCC+AGG - Chr1:3029625-3029644 MsG0180000220.01.T01:intron 45.0%
GCATAGTCATGGAAAGCTTG+AGG - Chr1:3030861-3030880 MsG0180000220.01.T01:CDS 45.0%
GCCCTCTTCGAATAGCTAAA+TGG - Chr1:3029168-3029187 MsG0180000220.01.T01:intron 45.0%
GTTTCCATCCCACAGTTATC+AGG - Chr1:3030839-3030858 MsG0180000220.01.T01:CDS 45.0%
TATCCTCAGGAAAGGAACAC+AGG + Chr1:3030079-3030098 None:intergenic 45.0%
TATGCCTGATAACTGTGGGA+TGG + Chr1:3030846-3030865 None:intergenic 45.0%
TCAAGATGAGATTGTCTCGG+CGG + Chr1:3028264-3028283 None:intergenic 45.0%
TCATATTGCAGCTTCCACTG+AGG + Chr1:3029514-3029533 None:intergenic 45.0%
TGAGGAAGATGAGGGTAGTT+TGG - Chr1:3028741-3028760 MsG0180000220.01.T01:CDS 45.0%
TGAGGGTAGTTTGGGGAATT+TGG - Chr1:3028750-3028769 MsG0180000220.01.T01:CDS 45.0%
TGGAAGAATTTCGCGGATGA+AGG + Chr1:3028202-3028221 None:intergenic 45.0%
TTACCAACTTGAGGAGCCTT+TGG - Chr1:3030807-3030826 MsG0180000220.01.T01:CDS 45.0%
TTGATTTCTGTCCGAAAGCG+TGG + Chr1:3029728-3029747 None:intergenic 45.0%
TTGTTCTGTCACCACGCTTT+CGG - Chr1:3029714-3029733 MsG0180000220.01.T01:CDS 45.0%
! CCACTAGCTCTTGAAGTGAT+TGG - Chr1:3029895-3029914 MsG0180000220.01.T01:intron 45.0%
! TGGGGACACATAATGGGAAA+TGG - Chr1:3029463-3029482 MsG0180000220.01.T01:CDS 45.0%
!! AAGATTGGAGTTGGTGGTGT+TGG - Chr1:3028691-3028710 MsG0180000220.01.T01:intron 45.0%
!! AGATTGGAGTTGGTGGTGTT+GGG - Chr1:3028692-3028711 MsG0180000220.01.T01:intron 45.0%
!! ATGAGGAAGTGTCTTGGATG+TGG - Chr1:3031340-3031359 MsG0180000220.01.T01:CDS 45.0%
!! GGGAGGTAAGAAGTATTCAC+TGG + Chr1:3030694-3030713 None:intergenic 45.0%
!!! GAAATAAATTTTTATATAAA+TGG + Chr1:3028435-3028454 None:intergenic 5.0%
AAGTCCGTTAACGCCATTGG+TGG + Chr1:3028093-3028112 None:intergenic 50.0%
ACACTTCCTCCTAGCATCTG+TGG - Chr1:3031145-3031164 MsG0180000220.01.T01:CDS 50.0%
ACCAACTTACCAATCGCGTC+AGG + Chr1:3031226-3031245 None:intergenic 50.0%
ACCACCACCAATGGCGTTAA+CGG - Chr1:3028086-3028105 MsG0180000220.01.T01:CDS 50.0%
AGCAGCTGAGGGCAAAGATT+TGG - Chr1:3029443-3029462 MsG0180000220.01.T01:CDS 50.0%
ATACCGTGCCTCTTCCACTA+AGG + Chr1:3030210-3030229 None:intergenic 50.0%
ATTTGTGGGATGGGTGGATC+TGG - Chr1:3028852-3028871 MsG0180000220.01.T01:intron 50.0%
CAAAAAACCGCTCCATCCTC+CGG + Chr1:3028663-3028682 None:intergenic 50.0%
CAGCTGAGGGCAAAGATTTG+GGG - Chr1:3029445-3029464 MsG0180000220.01.T01:CDS 50.0%
CCAACTTACCAATCGCGTCA+GGG + Chr1:3031225-3031244 None:intergenic 50.0%
CCATGTAAGGGCTGAGATGA+CGG - Chr1:3028609-3028628 MsG0180000220.01.T01:intron 50.0%
CTGTAATCATCACCAACCGG+TGG - Chr1:3028040-3028059 MsG0180000220.01.T01:CDS 50.0%
GCAGCTGAGGGCAAAGATTT+GGG - Chr1:3029444-3029463 MsG0180000220.01.T01:CDS 50.0%
GCCCTTAATCTGAGCAACTG+TGG - Chr1:3030391-3030410 MsG0180000220.01.T01:intron 50.0%
GGAAGCTGTGAGGAATAGTG+AGG - Chr1:3028723-3028742 MsG0180000220.01.T01:intron 50.0%
GGAGGGATGAAGATTGGAGT+TGG - Chr1:3028682-3028701 MsG0180000220.01.T01:intron 50.0%
GGGATGAAGATTGGAGTTGG+TGG - Chr1:3028685-3028704 MsG0180000220.01.T01:intron 50.0%
GTACAGGTTGTGGCTGAATG+TGG - Chr1:3029865-3029884 MsG0180000220.01.T01:intron 50.0%
GTCATTCCACAGATGCTAGG+AGG + Chr1:3031154-3031173 None:intergenic 50.0%
GTTGGAATTTGTGGGATGGG+TGG - Chr1:3028846-3028865 MsG0180000220.01.T01:intron 50.0%
TCACCTTAGTGGAAGAGGCA+CGG - Chr1:3030204-3030223 MsG0180000220.01.T01:intron 50.0%
TCTCCTCACCTTAGTGGAAG+AGG - Chr1:3030199-3030218 MsG0180000220.01.T01:intron 50.0%
TTTGTGGGATGGGTGGATCT+GGG - Chr1:3028853-3028872 MsG0180000220.01.T01:intron 50.0%
! AGAGGCACGGTATGCAAGTT+CGG - Chr1:3030217-3030236 MsG0180000220.01.T01:intron 50.0%
! AGAGGGCTGCACGGAATTTT+TGG + Chr1:3029155-3029174 None:intergenic 50.0%
!! AGATGACGGAGCGATTTGAC+CGG - Chr1:3028623-3028642 MsG0180000220.01.T01:intron 50.0%
!! AGCGTGAGCTCTGAGATGTT+AGG + Chr1:3030959-3030978 None:intergenic 50.0%
!! ATTGGTGGTGGTGGTGATGA+CGG + Chr1:3028078-3028097 None:intergenic 50.0%
!! GACGAGCATATGAAGTGCTG+TGG + Chr1:3030761-3030780 None:intergenic 50.0%
!! GCGTGAGCTCTGAGATGTTA+GGG + Chr1:3030958-3030977 None:intergenic 50.0%
!! GTGAGTTTTGTCGACGCTCA+TGG - Chr1:3029806-3029825 MsG0180000220.01.T01:CDS 50.0%
!!! AGGATGGAGCGGTTTTTTGG+AGG - Chr1:3028664-3028683 MsG0180000220.01.T01:intron 50.0%
!!! GGATGGAGCGGTTTTTTGGA+GGG - Chr1:3028665-3028684 MsG0180000220.01.T01:intron 50.0%
ACAAGCTGCTCCAGCACAGA+AGG + Chr1:3029588-3029607 None:intergenic 55.0%
ACCGGATTGAGGAGTCGAAC+CGG - Chr1:3028641-3028660 MsG0180000220.01.T01:intron 55.0%
AGATGAGATTGTCTCGGCGG+CGG + Chr1:3028261-3028280 None:intergenic 55.0%
CCCTGACGCGATTGGTAAGT+TGG - Chr1:3031222-3031241 MsG0180000220.01.T01:CDS 55.0%
CCGTCATCTCAGCCCTTACA+TGG + Chr1:3028612-3028631 None:intergenic 55.0%
GCTATTCGAAGAGGGCTGCA+CGG + Chr1:3029164-3029183 None:intergenic 55.0%
GCTCACGCTTGATCACTGTG+AGG - Chr1:3030970-3030989 MsG0180000220.01.T01:intron 55.0%
GGACCTGTGTTCCTTTCCTG+AGG - Chr1:3030073-3030092 MsG0180000220.01.T01:intron 55.0%
GGAGCGATTTGACCGGATTG+AGG - Chr1:3028630-3028649 MsG0180000220.01.T01:intron 55.0%
GTCATCACCACCACCACCAA+TGG - Chr1:3028077-3028096 MsG0180000220.01.T01:CDS 55.0%
GTGCCTCTTCCACTAAGGTG+AGG + Chr1:3030205-3030224 None:intergenic 55.0%
GTTCCAGCGACTAGTAGCGA+GGG + Chr1:3028334-3028353 None:intergenic 55.0%
TCCGAATGTGGAGCAGCTGA+GGG - Chr1:3029432-3029451 MsG0180000220.01.T01:intron 55.0%
TCCGTTAACGCCATTGGTGG+TGG + Chr1:3028090-3028109 None:intergenic 55.0%
TGTCTCGCAGTCTCCGAATG+TGG - Chr1:3029420-3029439 MsG0180000220.01.T01:intron 55.0%
TGTGTGGTCACCTTCTGTGC+TGG - Chr1:3029575-3029594 MsG0180000220.01.T01:CDS 55.0%
! TCCGGTTCGACTCCTCAATC+CGG + Chr1:3028645-3028664 None:intergenic 55.0%
!! GTTAACGCCATTGGTGGTGG+TGG + Chr1:3028087-3028106 None:intergenic 55.0%
!! TGGAGTTGGTGGTGTTGGGT+GGG - Chr1:3028696-3028715 MsG0180000220.01.T01:intron 55.0%
!! TTGGAGTTGGTGGTGTTGGG+TGG - Chr1:3028695-3028714 MsG0180000220.01.T01:intron 55.0%
!!! CGGAGGATGGAGCGGTTTTT+TGG - Chr1:3028661-3028680 MsG0180000220.01.T01:intron 55.0%
AAGCCCTCGCTACTAGTCGC+TGG - Chr1:3028328-3028347 MsG0180000220.01.T01:CDS 60.0%
AGCGACTAGTAGCGAGGGCT+TGG + Chr1:3028329-3028348 None:intergenic 60.0%
AGTCGAACCGGAGGATGGAG+CGG - Chr1:3028653-3028672 MsG0180000220.01.T01:intron 60.0%
CGTTCCAGCGACTAGTAGCG+AGG + Chr1:3028335-3028354 None:intergenic 60.0%
CTCCGAATGTGGAGCAGCTG+AGG - Chr1:3029431-3029450 MsG0180000220.01.T01:intron 60.0%
CTCTCCGAGATTCTCCGCTC+TGG - Chr1:3028288-3028307 MsG0180000220.01.T01:CDS 60.0%
GACGCCAGAGCGGAGAATCT+CGG + Chr1:3028295-3028314 None:intergenic 60.0%
GAGAAAGCTCGACGCCAGAG+CGG + Chr1:3028305-3028324 None:intergenic 60.0%
GCAAGCTTCCCTGACGCGAT+TGG - Chr1:3031214-3031233 MsG0180000220.01.T01:CDS 60.0%
GCCCTCAGCTGCTCCACATT+CGG + Chr1:3029436-3029455 None:intergenic 60.0%
GGATTGAGGAGTCGAACCGG+AGG - Chr1:3028644-3028663 MsG0180000220.01.T01:intron 60.0%
TCGCGTCAGGGAAGCTTGCA+AGG + Chr1:3031213-3031232 None:intergenic 60.0%
TGAGGAGTCGAACCGGAGGA+TGG - Chr1:3028648-3028667 MsG0180000220.01.T01:intron 60.0%
!! GGTGGGTTGAGGAAGCTGTG+AGG - Chr1:3028713-3028732 MsG0180000220.01.T01:intron 60.0%
!! TGGTGGTGTTGGGTGGGTTG+AGG - Chr1:3028702-3028721 MsG0180000220.01.T01:intron 60.0%
!! GGTGGTGGTGGTGATGACGG+CGG + Chr1:3028075-3028094 None:intergenic 65.0%
!! GTGGTGATGACGGCGGCGTT+TGG + Chr1:3028068-3028087 None:intergenic 65.0%
ACGGCGGCGTTTGGCGCCAC+CGG + Chr1:3028059-3028078 None:intergenic 75.0%
CGGCGGCGGAAGTTCGACGC+CGG + Chr1:3028247-3028266 None:intergenic 75.0%
CGGCGTTTGGCGCCACCGGT+TGG + Chr1:3028055-3028074 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 3028031 3031443 3028031 ID=MsG0180000220.01;Name=MsG0180000220.01
Chr1 mRNA 3028031 3031443 3028031 ID=MsG0180000220.01.T01;Parent=MsG0180000220.01;Name=MsG0180000220.01.T01;_AED=0.47;_eAED=0.47;_QI=65|0.5|0.22|1|1|1|9|0|626
Chr1 exon 3031052 3031443 3031052 ID=MsG0180000220.01.T01:exon:6325;Parent=MsG0180000220.01.T01
Chr1 exon 3030560 3030900 3030560 ID=MsG0180000220.01.T01:exon:6326;Parent=MsG0180000220.01.T01
Chr1 exon 3029692 3029827 3029692 ID=MsG0180000220.01.T01:exon:6327;Parent=MsG0180000220.01.T01
Chr1 exon 3029441 3029603 3029441 ID=MsG0180000220.01.T01:exon:6328;Parent=MsG0180000220.01.T01
Chr1 exon 3029249 3029312 3029249 ID=MsG0180000220.01.T01:exon:6329;Parent=MsG0180000220.01.T01
Chr1 exon 3028939 3029150 3028939 ID=MsG0180000220.01.T01:exon:6330;Parent=MsG0180000220.01.T01
Chr1 exon 3028725 3028855 3028725 ID=MsG0180000220.01.T01:exon:6331;Parent=MsG0180000220.01.T01
Chr1 exon 3028231 3028620 3028231 ID=MsG0180000220.01.T01:exon:6332;Parent=MsG0180000220.01.T01
Chr1 exon 3028031 3028147 3028031 ID=MsG0180000220.01.T01:exon:6333;Parent=MsG0180000220.01.T01
Chr1 five_prime_UTR 3031379 3031443 3031379 ID=MsG0180000220.01.T01:five_prime_utr;Parent=MsG0180000220.01.T01
Chr1 CDS 3031052 3031378 3031052 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3030560 3030900 3030560 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3029692 3029827 3029692 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3029441 3029603 3029441 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3029249 3029312 3029249 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3028939 3029150 3028939 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3028725 3028855 3028725 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3028231 3028620 3028231 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Chr1 CDS 3028031 3028147 3028031 ID=MsG0180000220.01.T01:cds;Parent=MsG0180000220.01.T01
Gene Sequence

>MsG0180000220.01.T01

ATGGCGTTAACGGACTTTTTTTCCTGTGAAGAGTTATGGAAAATGCTTGCAACAATTTCACGCAAAACATTCAACTCTCGATCAAGCGCCGAACAGCTCTTAACCTTCATCCGCGAAATTCTTCCAACAATTGAACAAATCAAATACTCCGGCGTCGAACTTCCGCCGCCGAGACAATCTCATCTTGATCGTCTCTCCGAGATTCTCCGCTCTGGCGTCGAGCTTTCTCACCAAGCCCTCGCTACTAGTCGCTGGAACGTTTATCGTAACTTTCAGCTTGCGAAGAAGATGGAGAATCTTGAAGAAACTGTCACACAAATCTTGCAGGTTCCGATGCAAGCTTATATACTTGCTGATGTTAACCATGTAAGGGCTGAGATGACGGAGCGATTTGACCGGATTGAGGAGTCGAACCGGAGGATGGAGCGGTTTTTTGGAGGGATGAAGATTGGAGTTGGTGGTGTTGGGTGGGTTGAGGAAGCTGTGAGGAATAGTGAGGAAGATGAGGGTAGTTTGGGGAATTTGGATTTGAGTTTTGGTTTGGAGTTTGGGAAGAATAAGGTTATGGAAATGGTTTTTGAAGGAAGGATTTTTGTGTTGTTGGAATTTGTGGGATGGGTGGATCTGGGAAAACTTCTCTTGCTAGAGAGATTTGTAGAGATGAACAAGTTCATATTCCCCATTTTTAATGCAACTTATAAAGTTGAATTGTTGGGCGAAGATGATGCACTATCTTTGTTCTGTCACCACGCTTTCGGACAGAAATCAATTCCTTTCGCAGCTAATCAGAATTTAGTCAAACAGGTTGTGGCTGAATGTGGAAATCTTCCACTAGCTCTTGAAGTGATTGGCGCTTCGTTACGAGATCAAAATGAAATGTTTTGGTTAAGTGTTAAAACAAGACTTTCTCAAGGGTTAAGTATAGGTGAATCCTATGAACATAATCTGATTGATAGAATGGCAATCAAAGCATATGCTATTGTGGTTGAGCTTTCAAACAAGAATCTCCTCACCTTAGTGGAAGAGGCACGTGCTGGTGGTATGTATAGCAGTTGCTTTGAGATTTCTGTTACTCAACATGATATACTGAGAGATCTTGCCCTTAATCTGAGCAACTGTGGAAACATTAATCAACGCCGAAGATTAGTTATGCCGAAACGAGAAGATAACGGACAGCTTCCTAAAGAATGGCTGAGATATGCTGACCAACCGTTCGAAGCTCAAATTGTTTCAATTCACACTGGTGAAATGAGAAAAAGTGACTGGTGTAATTTGGAATTTCCTAAAGCTGAAGTGCTGATTATTAATTTCACATCCAGTGAATACTTCTTACCTCCCTTCATAAATAGAATGCCAAAATTGAGAGCATTAATGTTATCAGGCATAGTCATGGAAAGCTTGAGGAAATTGTTTATAGTCCTTTGTAAGATTAACAACAGTTTTGAAGGAAAAGATTCAAACATCGCTGATATCTTCCCTAACATCTCAGAGCTCACGCTTGATCACTGTGAGGATGTAACCGAGTTACCTTCAAGCATTTGCAGGATACAGTCACTACAAAACTTGAGTCTCACTAACTGTCATAGTTTAACACGATTACCTGTTGAATTAGGCTCACTAAGATATCTAGAGATTCTACGGTTATATGCTTGTCCAAATTTGAGAACACTTCCTCCTAGCATCTGTGGAATGACTAGATTGAAGTATATCGACATTTCTCAATGTGTTTACCTTGCAAGCTTCCCTGACGCGATTGGTAAGTTGCTTGTAATTTGTGATGAGGAAGTGTCTTGGATGTGGAAAGAAGTCCAGAAGGTCAAGCCTAATGTTGATATTCAAGTTGTAGAGATTGAATATGATCTAGACTGGCTTAGAGAATAA

Protein sequence

>MsG0180000220.01.T01

MALTDFFSCEELWKMLATISRKTFNSRSSAEQLLTFIREILPTIEQIKYSGVELPPPRQSHLDRLSEILRSGVELSHQALATSRWNVYRNFQLAKKMENLEETVTQILQVPMQAYILADVNHVRAEMTERFDRIEESNRRMERFFGGMKIGVGGVGWVEEAVRNSEEDEGSLGNLDLSFGLEFGKNKVMEMVFEGRIFVLLEFVGWVDLGKLLLLERFVEMNKFIFPIFNATYKVELLGEDDALSLFCHHAFGQKSIPFAANQNLVKQVVAECGNLPLALEVIGASLRDQNEMFWLSVKTRLSQGLSIGESYEHNLIDRMAIKAYAIVVELSNKNLLTLVEEARAGGMYSSCFEISVTQHDILRDLALNLSNCGNINQRRRLVMPKREDNGQLPKEWLRYADQPFEAQIVSIHTGEMRKSDWCNLEFPKAEVLIINFTSSEYFLPPFINRMPKLRALMLSGIVMESLRKLFIVLCKINNSFEGKDSNIADIFPNISELTLDHCEDVTELPSSICRIQSLQNLSLTNCHSLTRLPVELGSLRYLEILRLYACPNLRTLPPSICGMTRLKYIDISQCVYLASFPDAIGKLLVICDEEVSWMWKEVQKVKPNVDIQVVEIEYDLDWLRE*