AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002005.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002005.01.T01 MTR_1g085150 90.347 663 55 1 17 679 82 735 0.0 1244
MsG0180002005.01.T01 MTR_1g110430 33.959 533 288 14 157 654 266 769 1.71e-67 236
MsG0180002005.01.T01 MTR_8g009900 26.906 223 132 7 162 363 55 267 4.02e-12 69.7
MsG0180002005.01.T01 MTR_8g009900 26.906 223 132 7 162 363 55 267 6.82e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002005.01.T01 AT5G26710 72.755 657 158 5 17 673 81 716 0.0 1005
MsG0180002005.01.T01 AT1G25350 32.422 512 319 10 160 654 269 770 3.05e-67 236
MsG0180002005.01.T01 AT1G25350 30.561 517 327 11 160 654 269 775 2.29e-58 211

Find 149 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGGAGAATTTGAAATTA+TGG 0.211763 1:-30852486 MsG0180002005.01.T01:CDS
TTGACGACTGGCTGGTCTTT+TGG 0.223662 1:+30852964 None:intergenic
CAATCGCAGATCTAGCTATC+TGG 0.266430 1:-30853320 MsG0180002005.01.T01:CDS
CTTATCTATTTCCTTTACTA+TGG 0.280813 1:+30851562 None:intergenic
TCAAATTCTCCTCTATACTA+TGG 0.289207 1:+30852494 None:intergenic
ACGCTTAAGATTTCGCATAT+TGG 0.307983 1:+30850998 None:intergenic
TTACCTCATTACGAAGAAAA+AGG 0.308169 1:-30851408 MsG0180002005.01.T01:intron
TCAGCAAACGAAAGCTTCTA+TGG 0.315812 1:-30852135 MsG0180002005.01.T01:CDS
GCTATCTGGGCAGGTCTTGC+AGG 0.316994 1:-30853306 MsG0180002005.01.T01:intron
CGAATTTAGCCGGTTGAATA+TGG 0.317857 1:-30852170 MsG0180002005.01.T01:CDS
TGGAGAGAAAGGGATATTTC+AGG 0.324909 1:-30850959 MsG0180002005.01.T01:CDS
GATGTCTGCTGCCTGCCATC+TGG 0.343011 1:+30850885 None:intergenic
TGAAGATAGCCACTGGGTTC+AGG 0.349425 1:+30852823 None:intergenic
GAAGTCACATCAACATATAT+TGG 0.353025 1:-30853021 MsG0180002005.01.T01:CDS
CCCAGTGGCTATCTTCATAT+TGG 0.358754 1:-30852817 MsG0180002005.01.T01:CDS
GTGGCCTTCACAGATCCTTC+AGG 0.367494 1:+30851497 None:intergenic
TCAATGCCTCATCATAGAAT+TGG 0.379838 1:-30852352 MsG0180002005.01.T01:CDS
AAGTTACCACATATACAAAA+AGG 0.402313 1:-30851658 MsG0180002005.01.T01:CDS
ACCCTGTGACATTCCCATCT+TGG 0.408163 1:+30851537 None:intergenic
CTTCCCTGAGTTGATGAAAC+TGG 0.410276 1:-30852617 MsG0180002005.01.T01:CDS
GGAAGTAACCTTGATGGATT+GGG 0.417880 1:-30851591 MsG0180002005.01.T01:CDS
AGTATTGCAGCTGGAGAGAA+AGG 0.419290 1:-30850970 MsG0180002005.01.T01:CDS
AGTTGGATACACTTTATACT+TGG 0.420137 1:+30852327 None:intergenic
ACACGATTGGTTTCGAAGGC+CGG 0.426191 1:+30850919 None:intergenic
GGATCACGGAGTGATTTGTT+TGG 0.426882 1:+30852394 None:intergenic
ACTAGTTAGCCTGACATTGA+TGG 0.433753 1:-30851438 MsG0180002005.01.T01:CDS
CTTTGTTTGCAGCTTGAGAA+AGG 0.435061 1:-30851110 MsG0180002005.01.T01:intron
GATTTGCAACGATAATAAAC+AGG 0.436698 1:+30852373 None:intergenic
AAAAGAGCAAAGTTGAATCA+TGG 0.437459 1:-30852105 MsG0180002005.01.T01:CDS
GCTTGTTGGCAGGGAAAGAA+AGG 0.439629 1:+30854786 None:intergenic
AGGAAGTAACCTTGATGGAT+TGG 0.439791 1:-30851592 MsG0180002005.01.T01:CDS
TACCGCTAACGGTGGCTTGT+TGG 0.443246 1:+30854772 None:intergenic
ACGATGGTACAATTCAATAA+TGG 0.446007 1:-30853067 MsG0180002005.01.T01:CDS
GATAAAAGATGTTAAGATGT+TGG 0.451442 1:-30852677 MsG0180002005.01.T01:CDS
CAGCTTGAGAAAGGAAAGAA+TGG 0.456822 1:-30851101 MsG0180002005.01.T01:CDS
TTATGGAAGGAAATGATTGC+AGG 0.457763 1:-30852469 MsG0180002005.01.T01:CDS
ATAAAAGATGTTAAGATGTT+GGG 0.458475 1:-30852676 MsG0180002005.01.T01:CDS
GCTAACGGTGGCTTGTTGGC+AGG 0.461542 1:+30854776 None:intergenic
CCACAAAACTGAAGCTCACT+TGG 0.463144 1:-30851478 MsG0180002005.01.T01:CDS
AAATCTCAATCTCATGGAAT+GGG 0.463289 1:-30851843 MsG0180002005.01.T01:CDS
CAAGTATATTGATGACTACT+TGG 0.468006 1:-30853376 MsG0180002005.01.T01:CDS
TGCCAACAAGCCACCGTTAG+CGG 0.469645 1:-30854774 MsG0180002005.01.T01:intron
AAAATCTCAATCTCATGGAA+TGG 0.472161 1:-30851844 MsG0180002005.01.T01:CDS
GATAAAGTGAAGAATGTGAA+TGG 0.472243 1:-30852940 MsG0180002005.01.T01:CDS
ATAAAGTGAAGAATGTGAAT+GGG 0.472454 1:-30852939 MsG0180002005.01.T01:CDS
TTCTCATCTACGAATTTAGC+CGG 0.474652 1:-30852180 MsG0180002005.01.T01:CDS
TCCAATATGAAGATAGCCAC+TGG 0.476082 1:+30852816 None:intergenic
TACTTCCTCACCTGCTGATA+CGG 0.478040 1:+30851607 None:intergenic
TCATGGAATGGGACAAGCTA+TGG 0.483068 1:-30851832 MsG0180002005.01.T01:CDS
ATGTCTGCTGCCTGCCATCT+GGG 0.485977 1:+30850886 None:intergenic
TGACACTCCACGTGAACAAA+AGG 0.492498 1:-30852557 MsG0180002005.01.T01:CDS
TGCTGAGCGATACAAAGGTC+AGG 0.492981 1:-30852761 MsG0180002005.01.T01:CDS
TCAGCCAGTTTCATCAACTC+AGG 0.495331 1:+30852613 None:intergenic
GACCAAGATGGGAATGTCAC+AGG 0.497471 1:-30851539 MsG0180002005.01.T01:CDS
GGACAGGCAAAATCATAAGT+TGG 0.503923 1:+30852310 None:intergenic
GAGTGTAGACCATATTCAAC+CGG 0.504461 1:+30852161 None:intergenic
GGGATTGCAAATAACACGAT+TGG 0.508386 1:+30850906 None:intergenic
GAAATAGATAAGGACCAAGA+TGG 0.508595 1:-30851551 MsG0180002005.01.T01:CDS
ATGCGGACAAATGATTTCTC+AGG 0.508905 1:+30851719 None:intergenic
TTCACTTTATCCTTGACGAC+TGG 0.509750 1:+30852952 None:intergenic
CATAGTAAAGGAAATAGATA+AGG 0.510740 1:-30851561 MsG0180002005.01.T01:CDS
TTTCAGGTGCTGGAAAGAGA+TGG 0.510988 1:-30853128 MsG0180002005.01.T01:intron
AATCAAACTCCATCAATGTC+AGG 0.511094 1:+30851429 None:intergenic
GACGCAGAGTCCGTATCAGC+AGG 0.511379 1:-30851617 MsG0180002005.01.T01:CDS
TCTGATAACATTAAGGGAGG+AGG 0.512500 1:-30852910 MsG0180002005.01.T01:CDS
TATGCACATGTACTCTCATC+AGG 0.512531 1:-30853420 MsG0180002005.01.T01:CDS
CTTTATCCTTGACGACTGGC+TGG 0.513178 1:+30852956 None:intergenic
TTTGTGCAAGGGTTAAGCAC+AGG 0.513222 1:+30851047 None:intergenic
GATCTTCCAGATGCTGAAGT+TGG 0.514176 1:-30852868 MsG0180002005.01.T01:CDS
AAAATTAATTAGCCAGGGTA+AGG 0.515011 1:-30852590 MsG0180002005.01.T01:CDS
GGCATTTCCCCAATCCATCA+AGG 0.517350 1:+30851583 None:intergenic
GCAGTGTGTCTAGGACATAC+AGG 0.521347 1:+30851785 None:intergenic
CCTTCACGAGCATCAACAAA+TGG 0.521928 1:+30852289 None:intergenic
AAGGTATCACTCATGCCCTT+CGG 0.524399 1:-30852270 MsG0180002005.01.T01:CDS
TCCACGTGAACAAAAGGAAA+AGG 0.526198 1:-30852551 MsG0180002005.01.T01:CDS
AATCGCAGATCTAGCTATCT+GGG 0.526585 1:-30853319 MsG0180002005.01.T01:CDS
ATGCAGAAACCATAGTATAG+AGG 0.528118 1:-30852503 MsG0180002005.01.T01:CDS
TTCAGGTGCTGGAAAGAGAT+GGG 0.528173 1:-30853127 MsG0180002005.01.T01:intron
GGTGTGATGTACCCTTCGTC+CGG 0.530625 1:-30850938 MsG0180002005.01.T01:CDS
GTGTTATGTCCGTGGGAAGT+TGG 0.531075 1:-30852428 MsG0180002005.01.T01:CDS
GGAGAATTTGAAATTATGGA+AGG 0.534607 1:-30852482 MsG0180002005.01.T01:CDS
GCGTGGAGAAGTATTGCAGC+TGG 0.537955 1:-30850979 MsG0180002005.01.T01:CDS
ATCGTAATGCTCAGTATCAC+AGG 0.540697 1:-30852231 MsG0180002005.01.T01:CDS
TTGGGGAAATGCCATAGTAA+AGG 0.541795 1:-30851573 MsG0180002005.01.T01:CDS
CTAACGGTGGCTTGTTGGCA+GGG 0.543531 1:+30854777 None:intergenic
AAAGAGCAAAGTTGAATCAT+GGG 0.544517 1:-30852104 MsG0180002005.01.T01:CDS
GGCTTGCAGTGTTATGTCCG+TGG 0.546395 1:-30852436 MsG0180002005.01.T01:CDS
GCAATGACCGCAGTGTGTCT+AGG 0.551700 1:+30851776 None:intergenic
AGGTGAGGAAGTAACCTTGA+TGG 0.551874 1:-30851597 MsG0180002005.01.T01:CDS
AAATAGATAAGGACCAAGAT+GGG 0.555380 1:-30851550 MsG0180002005.01.T01:CDS
TATTTGCAATCCCAGATGGC+AGG 0.556570 1:-30850896 MsG0180002005.01.T01:CDS
CTTGTTGGCAGGGAAAGAAA+GGG 0.556583 1:+30854787 None:intergenic
GTGTTATTTGCAATCCCAGA+TGG 0.560737 1:-30850900 MsG0180002005.01.T01:CDS
CAGCCAGTTTCATCAACTCA+GGG 0.564927 1:+30852614 None:intergenic
ACGAGCATCAACAAATGGAC+AGG 0.568037 1:+30852294 None:intergenic
TAAGGGAGGAGGCATGCCTT+CGG 0.569498 1:-30852899 MsG0180002005.01.T01:CDS
CGCACAATTCCTTGCACTGT+AGG 0.569571 1:+30852067 None:intergenic
GCAGATCTAGCTATCTGGGC+AGG 0.571047 1:-30853315 MsG0180002005.01.T01:CDS
CTAACTAGTTCATCTAACTC+AGG 0.576697 1:+30851452 None:intergenic
TCACAGGATTCAAGAGGACA+TGG 0.578665 1:-30852215 MsG0180002005.01.T01:CDS
CCACGATTTCCTACAGTGCA+AGG 0.583620 1:-30852076 MsG0180002005.01.T01:CDS
AGCTTGAGAAAGGAAAGAAT+GGG 0.586130 1:-30851100 MsG0180002005.01.T01:CDS
GGTTTCGAAGGCCGGACGAA+GGG 0.590280 1:+30850927 None:intergenic
GCTTGCAGTGTTATGTCCGT+GGG 0.592046 1:-30852435 MsG0180002005.01.T01:CDS
CCTTGCACTGTAGGAAATCG+TGG 0.592445 1:+30852076 None:intergenic
AGAGTCCGTATCAGCAGGTG+AGG 0.595755 1:-30851612 MsG0180002005.01.T01:CDS
ACATCCTGAAGGATCTGTGA+AGG 0.597097 1:-30851501 MsG0180002005.01.T01:CDS
AATAACACGATTGGTTTCGA+AGG 0.600160 1:+30850915 None:intergenic
GTGGTATTCACTTGACCGAA+GGG 0.600221 1:+30852255 None:intergenic
AATGATTGCAGGATCAGAGA+GGG 0.601106 1:-30852458 MsG0180002005.01.T01:CDS
GAAAGAGATGGGAAAGCTTG+AGG 0.602516 1:-30853116 MsG0180002005.01.T01:CDS
TTGTGCAAGGGTTAAGCACA+GGG 0.603914 1:+30851048 None:intergenic
CATTTGTCCGCATCATACCT+AGG 0.604356 1:-30851709 MsG0180002005.01.T01:CDS
AAAAGACCAGCCAGTCGTCA+AGG 0.611058 1:-30852962 MsG0180002005.01.T01:CDS
CCATTTGTTGATGCTCGTGA+AGG 0.612122 1:-30852289 MsG0180002005.01.T01:CDS
TTGGATCCAATTCTATGATG+AGG 0.614189 1:+30852346 None:intergenic
TAAAGTGAAGAATGTGAATG+GGG 0.619059 1:-30852938 MsG0180002005.01.T01:CDS
GTATTGCAGCTGGAGAGAAA+GGG 0.620537 1:-30850969 MsG0180002005.01.T01:CDS
CGTGGTATTCACTTGACCGA+AGG 0.620830 1:+30852254 None:intergenic
CCAATATGAAGATAGCCACT+GGG 0.621615 1:+30852817 None:intergenic
AACAAAAGGAAAAGGAGACA+AGG 0.625229 1:-30852543 MsG0180002005.01.T01:CDS
AATTCAATAATGGCAGAACA+TGG 0.630080 1:-30853057 MsG0180002005.01.T01:CDS
GGGAATGTCACAGGGTTAAG+CGG 0.630854 1:-30851530 MsG0180002005.01.T01:CDS
TGGTTTCGAAGGCCGGACGA+AGG 0.632020 1:+30850926 None:intergenic
GTATTGTTAACCCTCACTGA+TGG 0.633663 1:-30851743 MsG0180002005.01.T01:CDS
GATACTGAGCATTACGATCG+TGG 0.634209 1:+30852236 None:intergenic
ACCAAGATGGGAATGTCACA+GGG 0.639741 1:-30851538 MsG0180002005.01.T01:CDS
CAGTGTGTCTAGGACATACA+GGG 0.643759 1:+30851786 None:intergenic
AAGGAAAAGGAGACAAGGGA+TGG 0.647444 1:-30852538 MsG0180002005.01.T01:CDS
CTTGCATATCCAACTTCCCA+CGG 0.647797 1:+30852419 None:intergenic
AACGATAATAAACAGGATCA+CGG 0.648773 1:+30852380 None:intergenic
CGATTTGCACCTGAACCCAG+TGG 0.648921 1:-30852832 MsG0180002005.01.T01:CDS
AATATGCGAAATCTTAAGCG+TGG 0.649648 1:-30850996 MsG0180002005.01.T01:CDS
TTTCTCAGGACCATCAGTGA+GGG 0.655675 1:+30851733 None:intergenic
GGAAGATCTATCTCTACCGA+AGG 0.663050 1:+30852883 None:intergenic
TAGACACACTGCGGTCATTG+CGG 0.663991 1:-30851774 MsG0180002005.01.T01:CDS
GAAGTAACCTTGATGGATTG+GGG 0.667338 1:-30851590 MsG0180002005.01.T01:CDS
GCGGCGATTACCGCTAACGG+TGG 0.671857 1:+30854764 None:intergenic
TCAGTATCACAGGATTCAAG+AGG 0.673861 1:-30852221 MsG0180002005.01.T01:CDS
GATGCGGCGATTACCGCTAA+CGG 0.676425 1:+30854761 None:intergenic
GTGCAAGGAATTGTGCGTAG+AGG 0.676449 1:-30852061 MsG0180002005.01.T01:CDS
ATTTCTCAGGACCATCAGTG+AGG 0.679162 1:+30851732 None:intergenic
ACAAAAGGAAAAGGAGACAA+GGG 0.680867 1:-30852542 MsG0180002005.01.T01:CDS
AATATCAAAATCTTGCACGA+TGG 0.684460 1:-30853083 MsG0180002005.01.T01:CDS
CACAGGATTCAAGAGGACAT+GGG 0.686727 1:-30852214 MsG0180002005.01.T01:CDS
CATCAACATATGCCTTACCC+TGG 0.687143 1:+30852578 None:intergenic
AAATGATTGCAGGATCAGAG+AGG 0.689019 1:-30852459 MsG0180002005.01.T01:CDS
ATGATTGCAGGATCAGAGAG+GGG 0.699155 1:-30852457 MsG0180002005.01.T01:CDS
TGTATGTCCTAGACACACTG+CGG 0.783634 1:-30851783 MsG0180002005.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTCTTATAACATATA+TGG + Chr1:30854425-30854444 None:intergenic 15.0%
!! ATACTTGTTCAAAAATAAAT+TGG + Chr1:30853661-30853680 None:intergenic 15.0%
!! TAAAGAAAAAAAAGAATTTG+TGG - Chr1:30852968-30852987 MsG0180002005.01.T01:CDS 15.0%
!!! ATAAATTTGAGTTTATAGTT+TGG - Chr1:30851363-30851382 MsG0180002005.01.T01:intron 15.0%
!!! ATGTTATAAGAATTTGTTAA+CGG - Chr1:30854428-30854447 MsG0180002005.01.T01:intron 15.0%
!!! GTCAATAATTTTTTTATTGA+TGG + Chr1:30853870-30853889 None:intergenic 15.0%
!! AGCAAATAAAAACTTAAACA+AGG + Chr1:30854547-30854566 None:intergenic 20.0%
!! ATAAAAGATGTTAAGATGTT+GGG - Chr1:30852999-30853018 MsG0180002005.01.T01:CDS 20.0%
!! ATATATCAGAAAAAATAACC+TGG + Chr1:30851190-30851209 None:intergenic 20.0%
!! ATTCTTATAACATATATGGA+AGG + Chr1:30854421-30854440 None:intergenic 20.0%
!! TTTGATTCTGTCATTAATAA+AGG - Chr1:30854307-30854326 MsG0180002005.01.T01:intron 20.0%
!!! AATTCTTTTTTTTCTTTAGC+AGG + Chr1:30852966-30852985 None:intergenic 20.0%
!!! ATTGTTTTCATAAGATAACT+TGG - Chr1:30851743-30851762 MsG0180002005.01.T01:CDS 20.0%
!!! GATTTTTCTGATAACATTAA+GGG - Chr1:30852759-30852778 MsG0180002005.01.T01:CDS 20.0%
! AAGTTACCACATATACAAAA+AGG - Chr1:30854017-30854036 MsG0180002005.01.T01:intron 25.0%
! AATAAGTTGTTTAACCAAAC+AGG + Chr1:30851278-30851297 None:intergenic 25.0%
! AATTTGCAATTATTCGTAAC+AGG - Chr1:30851072-30851091 MsG0180002005.01.T01:CDS 25.0%
! ATAAAGTGAAGAATGTGAAT+GGG - Chr1:30852736-30852755 MsG0180002005.01.T01:CDS 25.0%
! ATAAGTTGTTTAACCAAACA+GGG + Chr1:30851277-30851296 None:intergenic 25.0%
! ATATATTGGCAAAAAAGGAT+CGG - Chr1:30852668-30852687 MsG0180002005.01.T01:CDS 25.0%
! ATCAAAAAATCTCAATCTCA+TGG - Chr1:30853826-30853845 MsG0180002005.01.T01:intron 25.0%
! CATAGTAAAGGAAATAGATA+AGG - Chr1:30854114-30854133 MsG0180002005.01.T01:intron 25.0%
! CTTATCTATTTCCTTTACTA+TGG + Chr1:30854116-30854135 None:intergenic 25.0%
! GATAAAAGATGTTAAGATGT+TGG - Chr1:30852998-30853017 MsG0180002005.01.T01:CDS 25.0%
! GATTGTTTGACAATAGTTTA+GGG - Chr1:30852061-30852080 MsG0180002005.01.T01:CDS 25.0%
! TCAAAGAAACAATTGAATGA+CGG + Chr1:30852209-30852228 None:intergenic 25.0%
! TCAACATATATTGGCAAAAA+AGG - Chr1:30852663-30852682 MsG0180002005.01.T01:CDS 25.0%
! TGATTGTTTGACAATAGTTT+AGG - Chr1:30852060-30852079 MsG0180002005.01.T01:CDS 25.0%
!! ATAAGTGATGTTGTCTTTTA+AGG - Chr1:30851251-30851270 MsG0180002005.01.T01:intron 25.0%
!! GGATTTTTCTGATAACATTA+AGG - Chr1:30852758-30852777 MsG0180002005.01.T01:CDS 25.0%
!! GGTCTTTAAGAATATATTGA+CGG - Chr1:30851696-30851715 MsG0180002005.01.T01:CDS 25.0%
!! TAGAGGAGAATTTGAAATTA+TGG - Chr1:30853189-30853208 MsG0180002005.01.T01:intron 25.0%
!! TATGATATTTCTGTAGTTCA+AGG + Chr1:30851958-30851977 None:intergenic 25.0%
!! TGGTATTTATAGCCTTTTAT+GGG - Chr1:30851491-30851510 MsG0180002005.01.T01:CDS 25.0%
AAAAAGGAGATTCTAGCATA+TGG - Chr1:30854649-30854668 MsG0180002005.01.T01:intron 30.0%
AAAAGAGCAAAGTTGAATCA+TGG - Chr1:30853570-30853589 MsG0180002005.01.T01:intron 30.0%
AAAATCTCAATCTCATGGAA+TGG - Chr1:30853831-30853850 MsG0180002005.01.T01:intron 30.0%
AAAATTAATTAGCCAGGGTA+AGG - Chr1:30853085-30853104 MsG0180002005.01.T01:CDS 30.0%
AAAGAGCAAAGTTGAATCAT+GGG - Chr1:30853571-30853590 MsG0180002005.01.T01:intron 30.0%
AAAGCACAATAAGGAATACT+AGG - Chr1:30851406-30851425 MsG0180002005.01.T01:intron 30.0%
AAATAGATAAGGACCAAGAT+GGG - Chr1:30854125-30854144 MsG0180002005.01.T01:intron 30.0%
AAATCTCAATCTCATGGAAT+GGG - Chr1:30853832-30853851 MsG0180002005.01.T01:intron 30.0%
AACGATAATAAACAGGATCA+CGG + Chr1:30853298-30853317 None:intergenic 30.0%
AAGCACAATAAGGAATACTA+GGG - Chr1:30851407-30851426 MsG0180002005.01.T01:intron 30.0%
AATAGGAGAGTGATAGTTTA+AGG - Chr1:30852025-30852044 MsG0180002005.01.T01:CDS 30.0%
AATATCAAAATCTTGCACGA+TGG - Chr1:30852592-30852611 MsG0180002005.01.T01:CDS 30.0%
AATTCAATAATGGCAGAACA+TGG - Chr1:30852618-30852637 MsG0180002005.01.T01:CDS 30.0%
ACGATGGTACAATTCAATAA+TGG - Chr1:30852608-30852627 MsG0180002005.01.T01:CDS 30.0%
AGAGCAAAAATCACTAAACA+AGG + Chr1:30852471-30852490 None:intergenic 30.0%
AGCAATATTTACTGCTTGTT+TGG + Chr1:30851891-30851910 None:intergenic 30.0%
AGTTGGATACACTTTATACT+TGG + Chr1:30853351-30853370 None:intergenic 30.0%
ATATATGGAAGGTTCATGAA+AGG + Chr1:30854410-30854429 None:intergenic 30.0%
ATGATAAACACTTACGTAGT+AGG - Chr1:30851324-30851343 MsG0180002005.01.T01:intron 30.0%
ATTGATAGATCATAGAAACG+AGG + Chr1:30851052-30851071 None:intergenic 30.0%
CCACATATACAAAAAGGATA+TGG - Chr1:30854023-30854042 MsG0180002005.01.T01:intron 30.0%
GAAGTCACATCAACATATAT+TGG - Chr1:30852654-30852673 MsG0180002005.01.T01:CDS 30.0%
GATAAAGTGAAGAATGTGAA+TGG - Chr1:30852735-30852754 MsG0180002005.01.T01:CDS 30.0%
GATTTGCAACGATAATAAAC+AGG + Chr1:30853305-30853324 None:intergenic 30.0%
GCTGAAAAATTAATTAGCCA+GGG - Chr1:30853080-30853099 MsG0180002005.01.T01:CDS 30.0%
GTCAAACAATCAGTCAATTT+GGG + Chr1:30852052-30852071 None:intergenic 30.0%
TAAAGTGAAGAATGTGAATG+GGG - Chr1:30852737-30852756 MsG0180002005.01.T01:CDS 30.0%
TACTTAGGTAGCAAGTAATA+GGG - Chr1:30851527-30851546 MsG0180002005.01.T01:CDS 30.0%
TATATTGGCAAAAAAGGATC+GGG - Chr1:30852669-30852688 MsG0180002005.01.T01:CDS 30.0%
TATTTACTGCTTGTTTGGAT+TGG + Chr1:30851886-30851905 None:intergenic 30.0%
TCAAATTCTCCTCTATACTA+TGG + Chr1:30853184-30853203 None:intergenic 30.0%
TCCTTGGTTTCTTTCAAAAT+AGG - Chr1:30852008-30852027 MsG0180002005.01.T01:intron 30.0%
TGATAAACACTTACGTAGTA+GGG - Chr1:30851325-30851344 MsG0180002005.01.T01:intron 30.0%
TGTCAAACAATCAGTCAATT+TGG + Chr1:30852053-30852072 None:intergenic 30.0%
TTACCTCATTACGAAGAAAA+AGG - Chr1:30854267-30854286 MsG0180002005.01.T01:intron 30.0%
TTACTTAGGTAGCAAGTAAT+AGG - Chr1:30851526-30851545 MsG0180002005.01.T01:CDS 30.0%
TTGTTTAGGGATCAAATTGA+AGG - Chr1:30852134-30852153 MsG0180002005.01.T01:CDS 30.0%
TTTAGTAGTAGTAGTATCAC+AGG + Chr1:30852434-30852453 None:intergenic 30.0%
! AGTGATCAACATTTTAAGCA+TGG + Chr1:30853789-30853808 None:intergenic 30.0%
! ATACCTTTTTCTTCGTAATG+AGG + Chr1:30854273-30854292 None:intergenic 30.0%
! CAAGTATATTGATGACTACT+TGG - Chr1:30852299-30852318 MsG0180002005.01.T01:CDS 30.0%
! CCATATCCTTTTTGTATATG+TGG + Chr1:30854026-30854045 None:intergenic 30.0%
! GGAGAATTTGAAATTATGGA+AGG - Chr1:30853193-30853212 MsG0180002005.01.T01:intron 30.0%
! GTGGTATTTATAGCCTTTTA+TGG - Chr1:30851490-30851509 MsG0180002005.01.T01:CDS 30.0%
! TACTTGCAAAAAGCACAATA+AGG - Chr1:30851397-30851416 MsG0180002005.01.T01:intron 30.0%
! TTTTCTGATAACATTAAGGG+AGG - Chr1:30852762-30852781 MsG0180002005.01.T01:CDS 30.0%
!! AAATGTTTTTCAAACTAGCC+AGG - Chr1:30851169-30851188 MsG0180002005.01.T01:intron 30.0%
!! ACATTTTGGCCATAGAAATT+AGG + Chr1:30851155-30851174 None:intergenic 30.0%
!! TCCTATTTTGAAAGAAACCA+AGG + Chr1:30852012-30852031 None:intergenic 30.0%
!!! GGCTAGTTTGAAAAACATTT+TGG + Chr1:30851169-30851188 None:intergenic 30.0%
AACAAAAGGAAAAGGAGACA+AGG - Chr1:30853132-30853151 MsG0180002005.01.T01:intron 35.0%
AATATGCGAAATCTTAAGCG+TGG - Chr1:30854679-30854698 MsG0180002005.01.T01:intron 35.0%
AATCAAACTCCATCAATGTC+AGG + Chr1:30854249-30854268 None:intergenic 35.0%
ACAAAAACTATGAAGCTGCT+GGG - Chr1:30853990-30854009 MsG0180002005.01.T01:intron 35.0%
ACAAAAGGAAAAGGAGACAA+GGG - Chr1:30853133-30853152 MsG0180002005.01.T01:intron 35.0%
ACATGAACCATCAAGTTTCA+TGG + Chr1:30852505-30852524 None:intergenic 35.0%
ACGCTTAAGATTTCGCATAT+TGG + Chr1:30854680-30854699 None:intergenic 35.0%
ACTTAGGTAGCAAGTAATAG+GGG - Chr1:30851528-30851547 MsG0180002005.01.T01:CDS 35.0%
AGCTTGAGAAAGGAAAGAAT+GGG - Chr1:30854575-30854594 MsG0180002005.01.T01:intron 35.0%
AGGGTTTAGTATCGTATTCT+AGG - Chr1:30851426-30851445 MsG0180002005.01.T01:CDS 35.0%
AGGTGAAGATGAATAGGTAT+AGG + Chr1:30852414-30852433 None:intergenic 35.0%
AGTGTGAAGAGATATGAGAA+AGG + Chr1:30851026-30851045 None:intergenic 35.0%
ATCGACAATAGTTTCAAGAC+TGG + Chr1:30851982-30852001 None:intergenic 35.0%
ATGCAGAAACCATAGTATAG+AGG - Chr1:30853172-30853191 MsG0180002005.01.T01:intron 35.0%
ATGTAACGCAGAAGAACAAA+TGG + Chr1:30851113-30851132 None:intergenic 35.0%
CCTTAATCCATGAAACTTGA+TGG - Chr1:30852495-30852514 MsG0180002005.01.T01:CDS 35.0%
CTAACTAGTTCATCTAACTC+AGG + Chr1:30854226-30854245 None:intergenic 35.0%
CTAGGGTTTAGACTGATTAT+TGG - Chr1:30851444-30851463 MsG0180002005.01.T01:CDS 35.0%
CTTGAGTGAACCTTCATATT+GGG - Chr1:30851909-30851928 MsG0180002005.01.T01:intron 35.0%
GAAATAGATAAGGACCAAGA+TGG - Chr1:30854124-30854143 MsG0180002005.01.T01:intron 35.0%
GCAACTCTTCCTAATTTCTA+TGG - Chr1:30851143-30851162 MsG0180002005.01.T01:intron 35.0%
GGCTGAAAAATTAATTAGCC+AGG - Chr1:30853079-30853098 MsG0180002005.01.T01:CDS 35.0%
GGGTTTAGTATCGTATTCTA+GGG - Chr1:30851427-30851446 MsG0180002005.01.T01:CDS 35.0%
GTCAATGGATGAAGAAAATC+CGG + Chr1:30850948-30850967 None:intergenic 35.0%
GTGTGAAGAGATATGAGAAA+GGG + Chr1:30851025-30851044 None:intergenic 35.0%
GTTCATGAAAGGTTCATGAT+TGG + Chr1:30854399-30854418 None:intergenic 35.0%
TATCACAGGTGAAGATGAAT+AGG + Chr1:30852420-30852439 None:intergenic 35.0%
TCAATGCCTCATCATAGAAT+TGG - Chr1:30853323-30853342 MsG0180002005.01.T01:CDS 35.0%
TTATGGAAGGAAATGATTGC+AGG - Chr1:30853206-30853225 MsG0180002005.01.T01:intron 35.0%
TTCTCATCTACGAATTTAGC+CGG - Chr1:30853495-30853514 MsG0180002005.01.T01:intron 35.0%
TTGATCACTGTTGTTGTACA+GGG - Chr1:30853800-30853819 MsG0180002005.01.T01:intron 35.0%
TTGGATCCAATTCTATGATG+AGG + Chr1:30853332-30853351 None:intergenic 35.0%
TTGTGTCAGTAGAAATCGTA+TGG + Chr1:30854376-30854395 None:intergenic 35.0%
TTTGTTCTTCTGCGTTACAT+TGG - Chr1:30851113-30851132 MsG0180002005.01.T01:intron 35.0%
! AACCAAAGTGTCTATGCATA+GGG + Chr1:30854468-30854487 None:intergenic 35.0%
! CCATCAAGTTTCATGGATTA+AGG + Chr1:30852498-30852517 None:intergenic 35.0%
! TATTGTCGATAGTTTGTCCT+TGG - Chr1:30851992-30852011 MsG0180002005.01.T01:intron 35.0%
! TATTTTGCTGAGCGATACAA+AGG - Chr1:30852909-30852928 MsG0180002005.01.T01:CDS 35.0%
! TGCATCCATTTTCAAAAGCA+GGG + Chr1:30852281-30852300 None:intergenic 35.0%
! TTGCATCCATTTTCAAAAGC+AGG + Chr1:30852282-30852301 None:intergenic 35.0%
!! AATAACACGATTGGTTTCGA+AGG + Chr1:30854763-30854782 None:intergenic 35.0%
!! TGTTAGTTGTTGTTTGCTTC+TGG - Chr1:30852174-30852193 MsG0180002005.01.T01:CDS 35.0%
!!! AGAATCTCCTTTTTTGTGCA+AGG + Chr1:30854643-30854662 None:intergenic 35.0%
!!! GAATCTCCTTTTTTGTGCAA+GGG + Chr1:30854642-30854661 None:intergenic 35.0%
!!! GAGAAGCGTACATTTTTAGT+TGG - Chr1:30852321-30852340 MsG0180002005.01.T01:CDS 35.0%
AAAGACCTAAGACCTCCAAA+AGG + Chr1:30851683-30851702 None:intergenic 40.0%
AAATGATTGCAGGATCAGAG+AGG - Chr1:30853216-30853235 MsG0180002005.01.T01:intron 40.0%
AAGACCTAAGACCTCCAAAA+GGG + Chr1:30851682-30851701 None:intergenic 40.0%
AAGGCTATAAATACCACCCT+TGG + Chr1:30851487-30851506 None:intergenic 40.0%
AATCGCAGATCTAGCTATCT+GGG - Chr1:30852356-30852375 MsG0180002005.01.T01:CDS 40.0%
AATGATTGCAGGATCAGAGA+GGG - Chr1:30853217-30853236 MsG0180002005.01.T01:intron 40.0%
ACTTAAACAAGGAAGCAAGC+AGG + Chr1:30854536-30854555 None:intergenic 40.0%
AGGCTATAAATACCACCCTT+GGG + Chr1:30851486-30851505 None:intergenic 40.0%
AGTTCAGAGACAAAGTTCGA+GGG - Chr1:30852104-30852123 MsG0180002005.01.T01:CDS 40.0%
ATCGTAATGCTCAGTATCAC+AGG - Chr1:30853444-30853463 MsG0180002005.01.T01:intron 40.0%
ATGCGGACAAATGATTTCTC+AGG + Chr1:30853959-30853978 None:intergenic 40.0%
CACAAAAACTATGAAGCTGC+TGG - Chr1:30853989-30854008 MsG0180002005.01.T01:intron 40.0%
CAGCTTGAGAAAGGAAAGAA+TGG - Chr1:30854574-30854593 MsG0180002005.01.T01:intron 40.0%
CCAATATGAAGATAGCCACT+GGG + Chr1:30852861-30852880 None:intergenic 40.0%
CGAATTTAGCCGGTTGAATA+TGG - Chr1:30853505-30853524 MsG0180002005.01.T01:intron 40.0%
GAGTGTAGACCATATTCAAC+CGG + Chr1:30853517-30853536 None:intergenic 40.0%
GCTTAACCCTTGCACAAAAA+AGG - Chr1:30854633-30854652 MsG0180002005.01.T01:intron 40.0%
GCTTGAGTGAACCTTCATAT+TGG - Chr1:30851908-30851927 MsG0180002005.01.T01:intron 40.0%
GGACAGGCAAAATCATAAGT+TGG + Chr1:30853368-30853387 None:intergenic 40.0%
GGGATTGCAAATAACACGAT+TGG + Chr1:30854772-30854791 None:intergenic 40.0%
GTATTGTTAACCCTCACTGA+TGG - Chr1:30853932-30853951 MsG0180002005.01.T01:intron 40.0%
GTTGATCACTGTTGTTGTAC+AGG - Chr1:30853799-30853818 MsG0180002005.01.T01:intron 40.0%
TACCCTATGCATAGACACTT+TGG - Chr1:30854463-30854482 MsG0180002005.01.T01:intron 40.0%
TACCTAAGTAACCACAAACC+AGG + Chr1:30851517-30851536 None:intergenic 40.0%
TAGTTCAGAGACAAAGTTCG+AGG - Chr1:30852103-30852122 MsG0180002005.01.T01:CDS 40.0%
TATGCACATGTACTCTCATC+AGG - Chr1:30852255-30852274 MsG0180002005.01.T01:CDS 40.0%
TCAGCAAACGAAAGCTTCTA+TGG - Chr1:30853540-30853559 MsG0180002005.01.T01:intron 40.0%
TCAGTATCACAGGATTCAAG+AGG - Chr1:30853454-30853473 MsG0180002005.01.T01:intron 40.0%
TCCAATATGAAGATAGCCAC+TGG + Chr1:30852862-30852881 None:intergenic 40.0%
TCCACGTGAACAAAAGGAAA+AGG - Chr1:30853124-30853143 MsG0180002005.01.T01:CDS 40.0%
TCTGATAACATTAAGGGAGG+AGG - Chr1:30852765-30852784 MsG0180002005.01.T01:CDS 40.0%
TGATCACTGTTGTTGTACAG+GGG - Chr1:30853801-30853820 MsG0180002005.01.T01:intron 40.0%
TGGAGAGAAAGGGATATTTC+AGG - Chr1:30854716-30854735 MsG0180002005.01.T01:intron 40.0%
TTCACTTTATCCTTGACGAC+TGG + Chr1:30852726-30852745 None:intergenic 40.0%
TTGGGGAAATGCCATAGTAA+AGG - Chr1:30854102-30854121 MsG0180002005.01.T01:intron 40.0%
! ACTAGTTAGCCTGACATTGA+TGG - Chr1:30854237-30854256 MsG0180002005.01.T01:intron 40.0%
! ACTTTTCCAACTTCAGCATC+TGG + Chr1:30852816-30852835 None:intergenic 40.0%
! AGGAAGTAACCTTGATGGAT+TGG - Chr1:30854083-30854102 MsG0180002005.01.T01:intron 40.0%
! ATACGTTTTGCGAGACTGTT+TGG + Chr1:30851840-30851859 None:intergenic 40.0%
! CATCTACACTATGCCTTTTC+AGG - Chr1:30852531-30852550 MsG0180002005.01.T01:CDS 40.0%
! CGAAGAAAAAGGTATGTGCT+TGG - Chr1:30854278-30854297 MsG0180002005.01.T01:intron 40.0%
! CTGAAAAGGCATAGTGTAGA+TGG + Chr1:30852533-30852552 None:intergenic 40.0%
! CTTTGTTTGCAGCTTGAGAA+AGG - Chr1:30854565-30854584 MsG0180002005.01.T01:intron 40.0%
! GAACCAAAGTGTCTATGCAT+AGG + Chr1:30854469-30854488 None:intergenic 40.0%
! GCTTCATAGTTTTTGTGCCT+AGG + Chr1:30853986-30854005 None:intergenic 40.0%
! TCCTTTTCCTTTTGTTCACG+TGG + Chr1:30853128-30853147 None:intergenic 40.0%
! TTTATAGCCTTTTATGGGCC+TGG - Chr1:30851496-30851515 MsG0180002005.01.T01:CDS 40.0%
! TTTTGTGCCTAGGTATGATG+CGG + Chr1:30853976-30853995 None:intergenic 40.0%
!! AAATCCCTTTTGGAGGTCTT+AGG - Chr1:30851675-30851694 MsG0180002005.01.T01:CDS 40.0%
!! AGGCTTCTAGAATCGAACAA+AGG - Chr1:30851578-30851597 MsG0180002005.01.T01:CDS 40.0%
!! CTTCTAGAATCGAACAAAGG+CGG - Chr1:30851581-30851600 MsG0180002005.01.T01:CDS 40.0%
!! GAAGTAACCTTGATGGATTG+GGG - Chr1:30854085-30854104 MsG0180002005.01.T01:intron 40.0%
!! GGAAGTAACCTTGATGGATT+GGG - Chr1:30854084-30854103 MsG0180002005.01.T01:intron 40.0%
!! GTGTTATTTGCAATCCCAGA+TGG - Chr1:30854775-30854794 MsG0180002005.01.T01:CDS 40.0%
!!! AGCAAGTAATAGGGGTGTTT+TGG - Chr1:30851536-30851555 MsG0180002005.01.T01:CDS 40.0%
!!! GCAAGTAATAGGGGTGTTTT+GGG - Chr1:30851537-30851556 MsG0180002005.01.T01:CDS 40.0%
!!! TAGGGGTGTTTTGGGTATTT+AGG - Chr1:30851545-30851564 MsG0180002005.01.T01:CDS 40.0%
!!! TTGTCTTTTAAGGCCCTGTT+TGG - Chr1:30851261-30851280 MsG0180002005.01.T01:intron 40.0%
AAACGAGCCTTTGAGCCTTA+TGG - Chr1:30851615-30851634 MsG0180002005.01.T01:CDS 45.0%
AAGGAAAAGGAGACAAGGGA+TGG - Chr1:30853137-30853156 MsG0180002005.01.T01:intron 45.0%
ACATCCTGAAGGATCTGTGA+AGG - Chr1:30854174-30854193 MsG0180002005.01.T01:intron 45.0%
ACCAAGATGGGAATGTCACA+GGG - Chr1:30854137-30854156 MsG0180002005.01.T01:intron 45.0%
ACGAGCATCAACAAATGGAC+AGG + Chr1:30853384-30853403 None:intergenic 45.0%
AGGTGAGGAAGTAACCTTGA+TGG - Chr1:30854078-30854097 MsG0180002005.01.T01:intron 45.0%
AGTATTGCAGCTGGAGAGAA+AGG - Chr1:30854705-30854724 MsG0180002005.01.T01:intron 45.0%
ATGATTGCAGGATCAGAGAG+GGG - Chr1:30853218-30853237 MsG0180002005.01.T01:intron 45.0%
ATGGACACGTGAATTGCTAG+TGG + Chr1:30854357-30854376 None:intergenic 45.0%
ATTTCTCAGGACCATCAGTG+AGG + Chr1:30853946-30853965 None:intergenic 45.0%
CAATCGCAGATCTAGCTATC+TGG - Chr1:30852355-30852374 MsG0180002005.01.T01:CDS 45.0%
CACAGGATTCAAGAGGACAT+GGG - Chr1:30853461-30853480 MsG0180002005.01.T01:intron 45.0%
CAGCCAGTTTCATCAACTCA+GGG + Chr1:30853064-30853083 None:intergenic 45.0%
CATCAACATATGCCTTACCC+TGG + Chr1:30853100-30853119 None:intergenic 45.0%
CATTTGTCCGCATCATACCT+AGG - Chr1:30853966-30853985 MsG0180002005.01.T01:intron 45.0%
CCACAAAACTGAAGCTCACT+TGG - Chr1:30854197-30854216 MsG0180002005.01.T01:intron 45.0%
CCACATTTCTCTTCTCCAAC+GGG - Chr1:30850993-30851012 MsG0180002005.01.T01:CDS 45.0%
CCCACATTTCTCTTCTCCAA+CGG - Chr1:30850992-30851011 MsG0180002005.01.T01:CDS 45.0%
CCCAGTGGCTATCTTCATAT+TGG - Chr1:30852858-30852877 MsG0180002005.01.T01:CDS 45.0%
CCGTTGGAGAAGAGAAATGT+GGG + Chr1:30850995-30851014 None:intergenic 45.0%
CCTTCACGAGCATCAACAAA+TGG + Chr1:30853389-30853408 None:intergenic 45.0%
CGAGGGTGAGTGATTGTTTA+GGG - Chr1:30852121-30852140 MsG0180002005.01.T01:CDS 45.0%
CGTTGGAGAAGAGAAATGTG+GGG + Chr1:30850994-30851013 None:intergenic 45.0%
CTGTAGTTCAAGGACCCAAT+AGG + Chr1:30851948-30851967 None:intergenic 45.0%
CTTACGTAGTAGGGTCTGTT+AGG - Chr1:30851334-30851353 MsG0180002005.01.T01:intron 45.0%
CTTGCATATCCAACTTCCCA+CGG + Chr1:30853259-30853278 None:intergenic 45.0%
CTTGTTGGCAGGGAAAGAAA+GGG + Chr1:30850891-30850910 None:intergenic 45.0%
GAAAGAGATGGGAAAGCTTG+AGG - Chr1:30852559-30852578 MsG0180002005.01.T01:CDS 45.0%
GAAAGTGGGACCCAATATGA+AGG + Chr1:30851922-30851941 None:intergenic 45.0%
GACCCAATAGGAGAGAAAGT+GGG + Chr1:30851936-30851955 None:intergenic 45.0%
GATACTGAGCATTACGATCG+TGG + Chr1:30853442-30853461 None:intergenic 45.0%
GATCACTGTTGTTGTACAGG+GGG - Chr1:30853802-30853821 MsG0180002005.01.T01:intron 45.0%
GATCTTCCAGATGCTGAAGT+TGG - Chr1:30852807-30852826 MsG0180002005.01.T01:CDS 45.0%
GGAAGATCTATCTCTACCGA+AGG + Chr1:30852795-30852814 None:intergenic 45.0%
GGTATTTAGGTGCGTTCTAG+AGG - Chr1:30851558-30851577 MsG0180002005.01.T01:CDS 45.0%
GTATTGCAGCTGGAGAGAAA+GGG - Chr1:30854706-30854725 MsG0180002005.01.T01:intron 45.0%
GTCCCACTTTCTCTCCTATT+GGG - Chr1:30851931-30851950 MsG0180002005.01.T01:intron 45.0%
GTGGTATTCACTTGACCGAA+GGG + Chr1:30853423-30853442 None:intergenic 45.0%
GTTGGAGAAGAGAAATGTGG+GGG + Chr1:30850993-30851012 None:intergenic 45.0%
TACTTCCTCACCTGCTGATA+CGG + Chr1:30854071-30854090 None:intergenic 45.0%
TATTTGCAATCCCAGATGGC+AGG - Chr1:30854779-30854798 MsG0180002005.01.T01:CDS 45.0%
TCACAGGATTCAAGAGGACA+TGG - Chr1:30853460-30853479 MsG0180002005.01.T01:intron 45.0%
TCAGCCAGTTTCATCAACTC+AGG + Chr1:30853065-30853084 None:intergenic 45.0%
TCATGGAATGGGACAAGCTA+TGG - Chr1:30853843-30853862 MsG0180002005.01.T01:intron 45.0%
TCGAGGGTGAGTGATTGTTT+AGG - Chr1:30852120-30852139 MsG0180002005.01.T01:CDS 45.0%
TCTCTTTCCAGCACCTGAAA+AGG + Chr1:30852547-30852566 None:intergenic 45.0%
TGAAGAAAATCCGGCAAGCT+TGG + Chr1:30850939-30850958 None:intergenic 45.0%
TGACACTCCACGTGAACAAA+AGG - Chr1:30853118-30853137 MsG0180002005.01.T01:CDS 45.0%
TGTATGTCCTAGACACACTG+CGG - Chr1:30853892-30853911 MsG0180002005.01.T01:intron 45.0%
TTGTGCAAGGGTTAAGCACA+GGG + Chr1:30854630-30854649 None:intergenic 45.0%
TTTCTCAGGACCATCAGTGA+GGG + Chr1:30853945-30853964 None:intergenic 45.0%
TTTGTGCAAGGGTTAAGCAC+AGG + Chr1:30854631-30854650 None:intergenic 45.0%
! AAGGTATCACTCATGCCCTT+CGG - Chr1:30853405-30853424 MsG0180002005.01.T01:CDS 45.0%
! AGCGGTGTTTTACATCCTGA+AGG - Chr1:30854163-30854182 MsG0180002005.01.T01:intron 45.0%
! CAGTGTGTCTAGGACATACA+GGG + Chr1:30853892-30853911 None:intergenic 45.0%
! CCAAGTGAGCTTCAGTTTTG+TGG + Chr1:30854200-30854219 None:intergenic 45.0%
! CCATTTGTTGATGCTCGTGA+AGG - Chr1:30853386-30853405 MsG0180002005.01.T01:CDS 45.0%
!! CTTCCCTGAGTTGATGAAAC+TGG - Chr1:30853058-30853077 MsG0180002005.01.T01:CDS 45.0%
!! GGAGGGTCTAAAATCCCTTT+TGG - Chr1:30851665-30851684 MsG0180002005.01.T01:CDS 45.0%
!! GGATCACGGAGTGATTTGTT+TGG + Chr1:30853284-30853303 None:intergenic 45.0%
!! GGGTCTAAAATCCCTTTTGG+AGG - Chr1:30851668-30851687 MsG0180002005.01.T01:CDS 45.0%
!! TCAGGCCCTGCTTTTGAAAA+TGG - Chr1:30852273-30852292 MsG0180002005.01.T01:CDS 45.0%
!! TTCAGGTGCTGGAAAGAGAT+GGG - Chr1:30852548-30852567 MsG0180002005.01.T01:CDS 45.0%
!! TTTCAGGTGCTGGAAAGAGA+TGG - Chr1:30852547-30852566 MsG0180002005.01.T01:CDS 45.0%
AAAAGACCAGCCAGTCGTCA+AGG - Chr1:30852713-30852732 MsG0180002005.01.T01:CDS 50.0%
AAATCCGGCAAGCTTGGATG+CGG + Chr1:30850933-30850952 None:intergenic 50.0%
ACCCTGTGACATTCCCATCT+TGG + Chr1:30854141-30854160 None:intergenic 50.0%
AGAAGGGCCATAAGGCTCAA+AGG + Chr1:30851625-30851644 None:intergenic 50.0%
ATGCCTTGAGATTGCTCCCA+AGG - Chr1:30851467-30851486 MsG0180002005.01.T01:CDS 50.0%
CCACAAACCAGGCCCATAAA+AGG + Chr1:30851506-30851525 None:intergenic 50.0%
CCACGATTTCCTACAGTGCA+AGG - Chr1:30853599-30853618 MsG0180002005.01.T01:intron 50.0%
CCCGTTGGAGAAGAGAAATG+TGG + Chr1:30850996-30851015 None:intergenic 50.0%
CCTTGCACTGTAGGAAATCG+TGG + Chr1:30853602-30853621 None:intergenic 50.0%
CGCACAATTCCTTGCACTGT+AGG + Chr1:30853611-30853630 None:intergenic 50.0%
CGTAACAGGTCGAAATTGCG+TGG - Chr1:30851086-30851105 MsG0180002005.01.T01:CDS 50.0%
CGTGGTATTCACTTGACCGA+AGG + Chr1:30853424-30853443 None:intergenic 50.0%
CTTTATCCTTGACGACTGGC+TGG + Chr1:30852722-30852741 None:intergenic 50.0%
GAACAAAGGCGGTGTCTTGA+GGG - Chr1:30851592-30851611 MsG0180002005.01.T01:CDS 50.0%
GACCAAGATGGGAATGTCAC+AGG - Chr1:30854136-30854155 MsG0180002005.01.T01:intron 50.0%
GCTTGCAGTGTTATGTCCGT+GGG - Chr1:30853240-30853259 MsG0180002005.01.T01:intron 50.0%
GGACCCAATAGGAGAGAAAG+TGG + Chr1:30851937-30851956 None:intergenic 50.0%
GGCATTTCCCCAATCCATCA+AGG + Chr1:30854095-30854114 None:intergenic 50.0%
GGGAATGTCACAGGGTTAAG+CGG - Chr1:30854145-30854164 MsG0180002005.01.T01:intron 50.0%
GGTCCCACTTTCTCTCCTAT+TGG - Chr1:30851930-30851949 MsG0180002005.01.T01:intron 50.0%
GTGCAAGGAATTGTGCGTAG+AGG - Chr1:30853614-30853633 MsG0180002005.01.T01:intron 50.0%
GTGTTATGTCCGTGGGAAGT+TGG - Chr1:30853247-30853266 MsG0180002005.01.T01:intron 50.0%
TAGACACACTGCGGTCATTG+CGG - Chr1:30853901-30853920 MsG0180002005.01.T01:intron 50.0%
TGAAGATAGCCACTGGGTTC+AGG + Chr1:30852855-30852874 None:intergenic 50.0%
TGCCTTGAGATTGCTCCCAA+GGG - Chr1:30851468-30851487 MsG0180002005.01.T01:CDS 50.0%
TGCTGAGCGATACAAAGGTC+AGG - Chr1:30852914-30852933 MsG0180002005.01.T01:CDS 50.0%
! GCAGTGTGTCTAGGACATAC+AGG + Chr1:30853893-30853912 None:intergenic 50.0%
! GCTTGTTGGCAGGGAAAGAA+AGG + Chr1:30850892-30850911 None:intergenic 50.0%
! GGCCTGGTTTGTGGTTACTT+AGG - Chr1:30851512-30851531 MsG0180002005.01.T01:CDS 50.0%
! TTTGAGCCTTATGGCCCTTC+TGG - Chr1:30851624-30851643 MsG0180002005.01.T01:CDS 50.0%
!! ACACGATTGGTTTCGAAGGC+CGG + Chr1:30854759-30854778 None:intergenic 50.0%
!! CCTTTTATGGGCCTGGTTTG+TGG - Chr1:30851503-30851522 MsG0180002005.01.T01:CDS 50.0%
!!! CACTATGCCTTTTCAGGTGC+TGG - Chr1:30852537-30852556 MsG0180002005.01.T01:CDS 50.0%
!!! TCTTTTGGCTTGGCTGCAGA+TGG + Chr1:30852699-30852718 None:intergenic 50.0%
!!! TTGACGACTGGCTGGTCTTT+TGG + Chr1:30852714-30852733 None:intergenic 50.0%
AGAAATGTGGGGGCGGAATC+AGG + Chr1:30850983-30851002 None:intergenic 55.0%
AGAGTCCGTATCAGCAGGTG+AGG - Chr1:30854063-30854082 MsG0180002005.01.T01:intron 55.0%
ATGTCTGCTGCCTGCCATCT+GGG + Chr1:30854792-30854811 None:intergenic 55.0%
CACCCTTGGGAGCAATCTCA+AGG + Chr1:30851473-30851492 None:intergenic 55.0%
CGAACAAAGGCGGTGTCTTG+AGG - Chr1:30851591-30851610 MsG0180002005.01.T01:CDS 55.0%
CGATTTGCACCTGAACCCAG+TGG - Chr1:30852843-30852862 MsG0180002005.01.T01:CDS 55.0%
CTTGAGATTGCTCCCAAGGG+TGG - Chr1:30851471-30851490 MsG0180002005.01.T01:CDS 55.0%
GAGAAAGGGAACGTACCCGT+TGG + Chr1:30851011-30851030 None:intergenic 55.0%
GATGCGGCGATTACCGCTAA+CGG + Chr1:30850917-30850936 None:intergenic 55.0%
GCAATGACCGCAGTGTGTCT+AGG + Chr1:30853902-30853921 None:intergenic 55.0%
GCAGATCTAGCTATCTGGGC+AGG - Chr1:30852360-30852379 MsG0180002005.01.T01:CDS 55.0%
GGAGAAGAGAAATGTGGGGG+CGG + Chr1:30850990-30851009 None:intergenic 55.0%
GGCTTGCAGTGTTATGTCCG+TGG - Chr1:30853239-30853258 MsG0180002005.01.T01:intron 55.0%
GGTGTGATGTACCCTTCGTC+CGG - Chr1:30854737-30854756 MsG0180002005.01.T01:intron 55.0%
GTGGCCTTCACAGATCCTTC+AGG + Chr1:30854181-30854200 None:intergenic 55.0%
TGCCAACAAGCCACCGTTAG+CGG - Chr1:30850901-30850920 MsG0180002005.01.T01:CDS 55.0%
! AGCCTTATGGCCCTTCTGGA+GGG - Chr1:30851628-30851647 MsG0180002005.01.T01:CDS 55.0%
! TAAGGGAGGAGGCATGCCTT+CGG - Chr1:30852776-30852795 MsG0180002005.01.T01:CDS 55.0%
! TACCGCTAACGGTGGCTTGT+TGG + Chr1:30850906-30850925 None:intergenic 55.0%
!! AGGAGGAAGGGAGGTGTCAA+TGG + Chr1:30850963-30850982 None:intergenic 55.0%
!! CTAACGGTGGCTTGTTGGCA+GGG + Chr1:30850901-30850920 None:intergenic 55.0%
!! GCGTGGAGAAGTATTGCAGC+TGG - Chr1:30854696-30854715 MsG0180002005.01.T01:intron 55.0%
!!! GACTGGCTGGTCTTTTGGCT+TGG + Chr1:30852709-30852728 None:intergenic 55.0%
AATGTGGGGGCGGAATCAGG+AGG + Chr1:30850980-30850999 None:intergenic 60.0%
ATCGCCGCATCCAAGCTTGC+CGG - Chr1:30850926-30850945 MsG0180002005.01.T01:CDS 60.0%
GACGCAGAGTCCGTATCAGC+AGG - Chr1:30854058-30854077 MsG0180002005.01.T01:intron 60.0%
GATGTCTGCTGCCTGCCATC+TGG + Chr1:30854793-30854812 None:intergenic 60.0%
GCTATCTGGGCAGGTCTTGC+AGG - Chr1:30852369-30852388 MsG0180002005.01.T01:CDS 60.0%
GGTTTCGAAGGCCGGACGAA+GGG + Chr1:30854751-30854770 None:intergenic 60.0%
TGGTTTCGAAGGCCGGACGA+AGG + Chr1:30854752-30854771 None:intergenic 60.0%
! GAGCCTTATGGCCCTTCTGG+AGG - Chr1:30851627-30851646 MsG0180002005.01.T01:CDS 60.0%
!! GCTAACGGTGGCTTGTTGGC+AGG + Chr1:30850902-30850921 None:intergenic 60.0%
!!! AGGGCGCTGAGGTCTTTTGG+AGG - Chr1:30851647-30851666 MsG0180002005.01.T01:CDS 60.0%
!!! GGGCGCTGAGGTCTTTTGGA+GGG - Chr1:30851648-30851667 MsG0180002005.01.T01:CDS 60.0%
!!! TGGAGGGCGCTGAGGTCTTT+TGG - Chr1:30851644-30851663 MsG0180002005.01.T01:CDS 60.0%
AGACCTCAGCGCCCTCCAGA+AGG + Chr1:30851642-30851661 None:intergenic 65.0%
CGCCCTCCAGAAGGGCCATA+AGG + Chr1:30851633-30851652 None:intergenic 65.0%
GACCTCAGCGCCCTCCAGAA+GGG + Chr1:30851641-30851660 None:intergenic 65.0%
GCGGCGATTACCGCTAACGG+TGG + Chr1:30850914-30850933 None:intergenic 65.0%
GGCGGAATCAGGAGGAAGGG+AGG + Chr1:30850972-30850991 None:intergenic 65.0%
GGGGGCGGAATCAGGAGGAA+GGG + Chr1:30850975-30850994 None:intergenic 65.0%
TGGGGGCGGAATCAGGAGGA+AGG + Chr1:30850976-30850995 None:intergenic 65.0%
!! GGCCCTTCTGGAGGGCGCTG+AGG - Chr1:30851636-30851655 MsG0180002005.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 30850875 30854822 30850875 ID=MsG0180002005.01;Name=MsG0180002005.01
Chr1 mRNA 30850875 30854822 30850875 ID=MsG0180002005.01.T01;Parent=MsG0180002005.01;Name=MsG0180002005.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.6|1|1|1|5|0|679
Chr1 exon 30854775 30854822 30854775 ID=MsG0180002005.01.T01:exon:42783;Parent=MsG0180002005.01.T01
Chr1 exon 30853307 30853460 30853307 ID=MsG0180002005.01.T01:exon:42782;Parent=MsG0180002005.01.T01
Chr1 exon 30852021 30853144 30852021 ID=MsG0180002005.01.T01:exon:42781;Parent=MsG0180002005.01.T01
Chr1 exon 30851409 30851876 30851409 ID=MsG0180002005.01.T01:exon:42780;Parent=MsG0180002005.01.T01
Chr1 exon 30850875 30851120 30850875 ID=MsG0180002005.01.T01:exon:42779;Parent=MsG0180002005.01.T01
Chr1 CDS 30854775 30854822 30854775 ID=MsG0180002005.01.T01:cds;Parent=MsG0180002005.01.T01
Chr1 CDS 30853307 30853460 30853307 ID=MsG0180002005.01.T01:cds;Parent=MsG0180002005.01.T01
Chr1 CDS 30852021 30853144 30852021 ID=MsG0180002005.01.T01:cds;Parent=MsG0180002005.01.T01
Chr1 CDS 30851409 30851876 30851409 ID=MsG0180002005.01.T01:cds;Parent=MsG0180002005.01.T01
Chr1 CDS 30850875 30851120 30850875 ID=MsG0180002005.01.T01:cds;Parent=MsG0180002005.01.T01
Gene Sequence

>MsG0180002005.01.T01

ATGGATATCAAAACCCTTTCTTTCCCTGCCAACAAGCCACCGTTAGCGATTGATGAATTGCTAGAGTATGCACATGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTAATACATTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCAATAATGGCAGAACATGGTACTGCATTAAATGAAGTCACATCAACATATATTGGCAAAAAAGGATCGGGAGAGCCATCTGCAGCCAAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTGAAGAATGTGAATGGGGATTTTTCTGATAACATTAAGGGAGGAGGCATGCCTTCGGTAGAGATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCATATTGGACACGCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAGCGATACAAAGGTCAGGTTATTTTGCGTTTTGATGATACAAATCCTGCTAAAGAAAAAAAAGAATTTGTGGACAATTTGATAAAAGATGTTAAGATGTTGGGTGTCAAATATGAAAAAATTACATATACATCAGATTACTTCCCTGAGTTGATGAAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCATATGTTGATGACACTCCACGTGAACAAAAGGAAAAGGAGACAAGGGATGGCATAGAATCTAAATGCAGAAACCATAGTATAGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTTGCAGTGTTATGTCCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAAATCAATGCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCCTGTCCATTTGTTGATGCTCGTGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCACGATCGTAATGCTCAGTATCACAGGATTCAAGAGGACATGGGAGTTAAAAAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTATGGTTTGTTGAAAAGAGCAAAGTTGAATCATGGGATGATCCACGATTTCCTACAGTGCAAGGAATTGTGCGTAGAGGCTTGAAAATTGAAGCGCTAATCCAATTTATTTTTGAACAAGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTATGGACCATCAATAAAAAAATTATTGACCCTGTATGTCCTAGACACACTGCGGTCATTGCGGATAGACGTGTATTGTTAACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAAAACTATGAAGCTGCTGGGAATAAAGTTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCCGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAATAGATAAGGACCAAGATGGGAATGTCACAGGGTTAAGCGGTGTTTTACATCCTGAAGGATCTGTGAAGGCCACAAAACTGAAGCTCACTTGGCTACCTGAGTTAGATGAACTAGTTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGCTTGAGAAAGGAAAGAATGGGAAAGAAGAGAATATCGATGATGTGCTTAACCCTGTGCTTAACCCTTGCACAAAAAAGGAGATTCTAGCATATGGAGAATCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA
Protein sequence

>MsG0180002005.01.T01

MDIKTLSFPANKPPLAIDELLEYAHVLSSGPAFENGCKYIDDYLEKRTFLVGNTLSIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSIMAEHGTALNEVTSTYIGKKGSGEPSAAKPKDQPVVKDKVKNVNGDFSDNIKGGGMPSVEIDLPDAEVGKVRLRFAPEPSGYLHIGHAKAALLNKYFAERYKGQVILRFDDTNPAKEKKEFVDNLIKDVKMLGVKYEKITYTSDYFPELMKLAEKLISQGKAYVDDTPREQKEKETRDGIESKCRNHSIEENLKLWKEMIAGSERGLQCYVRGKLDMQDPNKSLRDPVYYRCKSMPHHRIGSKYKVYPTYDFACPFVDAREGITHALRSSEYHDRNAQYHRIQEDMGVKKVLIYEFSRLNMVYTLLSKRKLLWFVEKSKVESWDDPRFPTVQGIVRRGLKIEALIQFIFEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADRRVLLTLTDGPEKSFVRIIPRHKNYEAAGNKVTTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEIDKDQDGNVTGLSGVLHPEGSVKATKLKLTWLPELDELVSLTLMEFDYLITKKKLEKGKNGKEENIDDVLNPVLNPCTKKEILAYGESNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK*