AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002952.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002952.01.T01 MTR_1g053520 91.537 579 19 1 115 693 16 564 0.0 1059
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002952.01.T01 AT5G06830 60.377 583 178 7 115 693 16 549 0.0 662

Find 160 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATATTTGGTCGTCTTTC+AGG 0.144776 1:+53716434 MsG0180002952.01.T01:CDS
AATTTCAGTTTCTTCAATTT+TGG 0.159649 1:+53715071 MsG0180002952.01.T01:intron
CTGACAAGCTTCAACGTATT+TGG 0.165391 1:-53716863 None:intergenic
GGAAGGCCAGTTAATATAAT+TGG 0.182964 1:+53719848 MsG0180002952.01.T01:CDS
AAAATACTGAATAAATTTAT+AGG 0.210348 1:+53719980 MsG0180002952.01.T01:three_prime_UTR
CAGGGTCTAGGGTTTGAAAA+AGG 0.219060 1:-53715234 None:intergenic
ACTTCCACATTGCTTTCTTC+TGG 0.239347 1:-53717397 None:intergenic
AATGCAAAGTGATATTTCTT+TGG 0.266738 1:+53718178 MsG0180002952.01.T01:CDS
ATCTCCCCAATTATATTAAC+TGG 0.274045 1:-53719854 None:intergenic
TAATGTCAGATTAGAACTTT+TGG 0.282447 1:+53716974 MsG0180002952.01.T01:CDS
GAGGAGATATATACTTATTT+CGG 0.293070 1:+53713937 MsG0180002952.01.T01:CDS
AATTCTTCGTTTGATATTGT+TGG 0.306909 1:-53717592 None:intergenic
GACTCTGAGGTTATTAATAT+TGG 0.309283 1:+53717343 MsG0180002952.01.T01:CDS
CAATTTCATTGCTGACAAAT+AGG 0.323606 1:+53718201 MsG0180002952.01.T01:CDS
CGACTTGCTTGTTCTATTAG+TGG 0.327013 1:+53711487 MsG0180002952.01.T01:CDS
AAAGTATAACTCACTTGTTT+TGG 0.328584 1:-53718516 None:intergenic
CTGATAGTGATGAAGCCTTT+TGG 0.328636 1:+53719939 MsG0180002952.01.T01:three_prime_UTR
TTTAGGGATTGGTTATTTAG+AGG 0.332872 1:+53716364 MsG0180002952.01.T01:CDS
TTGTTGATTGTAAGAAATTT+TGG 0.333202 1:+53716287 MsG0180002952.01.T01:intron
AAATTCTTACCCCTCTTCCT+TGG 0.343940 1:-53713771 None:intergenic
CGGCGCGTGCGGGACTGTTT+TGG 0.344007 1:+53711587 MsG0180002952.01.T01:CDS
TGGAAAGTTCACAAATTGAT+TGG 0.357253 1:+53717452 MsG0180002952.01.T01:CDS
GAAGGCCAGTTAATATAATT+GGG 0.364813 1:+53719849 MsG0180002952.01.T01:CDS
ACCACAACAAGCACTCTATA+AGG 0.379522 1:-53711518 None:intergenic
ACAATATCAAACGAAGAATT+AGG 0.385732 1:+53717595 MsG0180002952.01.T01:CDS
AAAACAAACCTTCAGGGTCT+AGG 0.387153 1:-53715246 None:intergenic
AGACAGACTAGTAAACTCTT+TGG 0.390215 1:+53718398 MsG0180002952.01.T01:CDS
TGCTTGTTGTGGTTGGGCTT+TGG 0.391112 1:+53711528 MsG0180002952.01.T01:CDS
TATTATTTGGCTAGGGTGCT+TGG 0.392305 1:+53716529 MsG0180002952.01.T01:intron
ATAGAGTGCTTGTTGTGGTT+GGG 0.393419 1:+53711522 MsG0180002952.01.T01:CDS
ATGTGAAAATAAGAACAAAA+AGG 0.395006 1:-53720019 None:intergenic
TTACCCCTCTTCCTTGGGTA+AGG 0.399834 1:-53713765 None:intergenic
GAGGCATTAATGATTTCATA+TGG 0.400164 1:-53717523 None:intergenic
TGCACCTGTTTCCTCTGATA+AGG 0.401811 1:-53716766 None:intergenic
ACACTTTCATCCATGTTTGA+TGG 0.404738 1:+53719827 MsG0180002952.01.T01:CDS
TCTGTCTAATTCAAAAGAAC+AGG 0.407323 1:-53720044 None:intergenic
TTGTCAGGAGCTTGGCCTAC+AGG 0.414431 1:+53716879 MsG0180002952.01.T01:CDS
TTGCTGCTCCTGACATTGAC+TGG 0.415578 1:+53717419 MsG0180002952.01.T01:CDS
ACGGAAAGTAGGAACATATT+TGG 0.415933 1:+53716422 MsG0180002952.01.T01:CDS
AAATACTGAATAAATTTATA+GGG 0.417175 1:+53719981 MsG0180002952.01.T01:three_prime_UTR
ATGAAGCTATTTGTGGTACT+TGG 0.417992 1:+53720129 MsG0180002952.01.T01:three_prime_UTR
AATTCTTACCCCTCTTCCTT+GGG 0.420016 1:-53713770 None:intergenic
TATAGAGTGCTTGTTGTGGT+TGG 0.421908 1:+53711521 MsG0180002952.01.T01:CDS
TAAGTATATATCTCCTCAAA+TGG 0.424288 1:-53713931 None:intergenic
AAGCACGTTTAGCAGGATCT+TGG 0.431282 1:+53717016 MsG0180002952.01.T01:CDS
TCACAAATTGATTGGGACAT+TGG 0.431406 1:+53717460 MsG0180002952.01.T01:CDS
AGATATATACTTATTTCGGC+TGG 0.432388 1:+53713941 MsG0180002952.01.T01:CDS
ATATGGACCCAAGCCATTAC+CGG 0.432848 1:-53717506 None:intergenic
ACTCTGTTGACCAGTGGTCT+TGG 0.434928 1:+53719881 MsG0180002952.01.T01:CDS
GTCAACTGAGATAAGGCATC+TGG 0.441830 1:-53717724 None:intergenic
TTGTTGTGGTTGGGCTTTGG+TGG 0.443610 1:+53711531 MsG0180002952.01.T01:CDS
CAAATACGTTGAAGCTTGTC+AGG 0.443888 1:+53716864 MsG0180002952.01.T01:CDS
GGAAAGTTCACAAATTGATT+GGG 0.448608 1:+53717453 MsG0180002952.01.T01:CDS
GTTATAAATGAAGCTATTTG+TGG 0.453076 1:+53720122 MsG0180002952.01.T01:three_prime_UTR
GTTAACTTGCGTGCATAAGA+TGG 0.454133 1:+53716313 MsG0180002952.01.T01:CDS
GGTGGCTTGTTGTGCTTTCG+AGG 0.454161 1:+53711549 MsG0180002952.01.T01:CDS
CGAGGATACCGGTAATGGCT+TGG 0.455046 1:+53717498 MsG0180002952.01.T01:CDS
ATTATTTGGCTAGGGTGCTT+GGG 0.455346 1:+53716530 MsG0180002952.01.T01:intron
AGAGGAAGGCCTTCCATTTG+AGG 0.463668 1:+53713918 MsG0180002952.01.T01:CDS
CACTTCCAAGCACGTTTAGC+AGG 0.464192 1:+53717009 MsG0180002952.01.T01:CDS
GAGGATACCGGTAATGGCTT+GGG 0.472944 1:+53717499 MsG0180002952.01.T01:CDS
GAAAGACGGGTTGAAGGACT+TGG 0.474948 1:+53718449 MsG0180002952.01.T01:CDS
AAACAAACCTTCAGGGTCTA+GGG 0.476235 1:-53715245 None:intergenic
AGCTGTGGTATCGGCGCGTG+CGG 0.479875 1:+53711576 MsG0180002952.01.T01:CDS
TCAAATGGAAGGCCTTCCTC+TGG 0.482719 1:-53713916 None:intergenic
TTGAAGAATGGTTGGTCGAT+CGG 0.484184 1:+53715119 MsG0180002952.01.T01:CDS
GCTGTGGTATCGGCGCGTGC+GGG 0.485755 1:+53711577 MsG0180002952.01.T01:CDS
GAAATATCCCAGTCAATGTC+AGG 0.486100 1:-53717427 None:intergenic
AAGTCCTTATCAGAGGAAAC+AGG 0.490424 1:+53716762 MsG0180002952.01.T01:intron
GCTCACATGCAGATATATGC+TGG 0.490986 1:+53717617 MsG0180002952.01.T01:CDS
GCTTGTTCTATTAGTGGCAA+TGG 0.492138 1:+53711493 MsG0180002952.01.T01:CDS
AAGATCCTGCTAAACGTGCT+TGG 0.492514 1:-53717014 None:intergenic
TTATGATTCTCAACTCCAAA+AGG 0.493920 1:+53718240 MsG0180002952.01.T01:CDS
GGGTGCTCTGCGAAAAGTGG+AGG 0.494133 1:+53713962 MsG0180002952.01.T01:CDS
CAGAGATGCTCACACTGAAA+AGG 0.498117 1:+53717094 MsG0180002952.01.T01:CDS
AAAAGGGGATCAGAATCCTT+AGG 0.511257 1:-53715217 None:intergenic
GCTGGGTGCTCTGCGAAAAG+TGG 0.512536 1:+53713959 MsG0180002952.01.T01:CDS
CAGACTAGTAAACTCTTTGG+AGG 0.513990 1:+53718401 MsG0180002952.01.T01:CDS
GTTGAAGCTTGTCAGGAGCT+TGG 0.515681 1:+53716871 MsG0180002952.01.T01:CDS
TGTTATCTTTGAAGAATGGT+TGG 0.516651 1:+53715111 MsG0180002952.01.T01:CDS
GAATGCATCAAATGCCGTAC+TGG 0.523482 1:+53717684 MsG0180002952.01.T01:CDS
TTAAATCATTCTTAAATCAA+CGG 0.523895 1:+53718054 MsG0180002952.01.T01:CDS
TTAACTTGCGTGCATAAGAT+GGG 0.525796 1:+53716314 MsG0180002952.01.T01:CDS
CAGTGTTCATTCAAGTAACA+AGG 0.526568 1:+53717366 MsG0180002952.01.T01:CDS
GGAAAAGAGTACCTTCTGAT+TGG 0.530458 1:+53715140 MsG0180002952.01.T01:CDS
TCTTCTTGCAAGATCAATGA+AGG 0.533636 1:-53720168 None:intergenic
CAAGTTGAAAGACGGGTTGA+AGG 0.533639 1:+53718443 MsG0180002952.01.T01:CDS
ATTGTATAGTCTTGAGCCAA+AGG 0.535332 1:-53720081 None:intergenic
AAGTGTCTCTTCACCCACTC+AGG 0.536929 1:-53714000 None:intergenic
GTTCTCTGTCAACTGAGATA+AGG 0.538450 1:-53717731 None:intergenic
TGTACTCCGTGTCTAAAAGC+TGG 0.541805 1:-53717768 None:intergenic
CAAATCCTTACCCAAGGAAG+AGG 0.542957 1:+53713760 MsG0180002952.01.T01:CDS
CGAGGCTCAAGCTGTGGTAT+CGG 0.544200 1:+53711567 MsG0180002952.01.T01:CDS
TGAAGTCTACTACGGAAAGT+AGG 0.544788 1:+53716411 MsG0180002952.01.T01:CDS
ATGAAGTCAAGTTGAAAGAC+GGG 0.545553 1:+53718436 MsG0180002952.01.T01:CDS
TGTAGTCACTATCCACCAAA+AGG 0.545670 1:-53719954 None:intergenic
GATATATACTTATTTCGGCT+GGG 0.545796 1:+53713942 MsG0180002952.01.T01:CDS
AAACAGTGACAACATTTCAC+TGG 0.546636 1:+53717046 MsG0180002952.01.T01:CDS
TTTCATCCATGTTTGATGGA+AGG 0.547085 1:+53719831 MsG0180002952.01.T01:CDS
TCAACAGCAACATTTAAAGA+TGG 0.547432 1:-53717322 None:intergenic
TGCTTTCGAGGCTCAAGCTG+TGG 0.547924 1:+53711561 MsG0180002952.01.T01:CDS
ATAATGATTGCAGAGATCTT+CGG 0.548460 1:+53717258 MsG0180002952.01.T01:intron
AGTTGATGAAGAAGTCTGAA+TGG 0.553738 1:-53717551 None:intergenic
CAAGCCATTACCGGTATCCT+CGG 0.554447 1:-53717497 None:intergenic
GAAACCGAGGATACCGGTAA+TGG 0.556283 1:+53717493 MsG0180002952.01.T01:CDS
GTCGCTACAAAATCAAGTAC+AGG 0.556442 1:+53718106 MsG0180002952.01.T01:CDS
TGACAGAGAACAAGGAAGGA+AGG 0.562828 1:+53717743 MsG0180002952.01.T01:CDS
AAATCCTTACCCAAGGAAGA+GGG 0.562926 1:+53713761 MsG0180002952.01.T01:CDS
AGAAGACTGGTTGTCCAGTA+CGG 0.564471 1:-53717698 None:intergenic
AGAATTCGTTATCTTCATTG+TGG 0.565216 1:+53718493 MsG0180002952.01.T01:CDS
ACCTTATAGAGTGCTTGTTG+TGG 0.565370 1:+53711517 MsG0180002952.01.T01:CDS
CTCACATGCAGATATATGCT+GGG 0.570752 1:+53717618 MsG0180002952.01.T01:CDS
TATATATCTCCTCAAATGGA+AGG 0.570774 1:-53713927 None:intergenic
TTAGAAGAAACCGAGGATAC+CGG 0.572202 1:+53717487 MsG0180002952.01.T01:CDS
GGTGCTCTGCGAAAAGTGGA+GGG 0.579351 1:+53713963 MsG0180002952.01.T01:CDS
ATCTCAGTTGACAGAGAACA+AGG 0.579381 1:+53717735 MsG0180002952.01.T01:CDS
AAATGTTGCTGTTGACTCTG+AGG 0.584835 1:+53717330 MsG0180002952.01.T01:CDS
CATTGACTGGGATATTTCAG+TGG 0.585460 1:+53717432 MsG0180002952.01.T01:CDS
GGGGATCAGAATCCTTAGGA+AGG 0.587029 1:-53715213 None:intergenic
TAGCTTCATTTATAACATGT+CGG 0.592775 1:-53720115 None:intergenic
TCATCATGCTCCAAGACCAC+TGG 0.593689 1:-53719891 None:intergenic
TATTATGAAGTCCTTATCAG+AGG 0.594604 1:+53716755 MsG0180002952.01.T01:intron
AGGCATCTGGAAGAGAAGAC+TGG 0.595558 1:-53717711 None:intergenic
CATGAAGTCAAGTTGAAAGA+CGG 0.596676 1:+53718435 MsG0180002952.01.T01:CDS
TATTCTCTTGAAGTCTACTA+CGG 0.597945 1:+53716403 MsG0180002952.01.T01:CDS
ATTTGTCAAATCCTTACCCA+AGG 0.600343 1:+53713754 MsG0180002952.01.T01:CDS
GCTTGCAGAACTCGATCGCA+AGG 0.600448 1:+53716804 MsG0180002952.01.T01:CDS
AAAGGCTTCATCACTATCAG+AGG 0.602142 1:-53719936 None:intergenic
TGGTCGTCTTTCAGGTTCTG+CGG 0.602425 1:+53716442 MsG0180002952.01.T01:CDS
TTTCAAACCCTAGACCCTGA+AGG 0.603613 1:+53715238 MsG0180002952.01.T01:CDS
GCATAAGATGGGATTAAATG+TGG 0.605773 1:+53716325 MsG0180002952.01.T01:CDS
ACAGCAACATTTAAAGATGG+AGG 0.608554 1:-53717319 None:intergenic
CATTGTCTCTATAGTATCAG+CGG 0.608655 1:-53718159 None:intergenic
GGACTTGGCTACTAAGCGCA+TGG 0.609522 1:+53718464 MsG0180002952.01.T01:CDS
TCTTCATCAACTGAGGATGT+CGG 0.609968 1:+53717562 MsG0180002952.01.T01:CDS
TACATAAGAGGACCAGAGGA+AGG 0.611807 1:+53713904 MsG0180002952.01.T01:intron
AAGCTGTACTGCAAAACTTG+AGG 0.612074 1:+53717281 MsG0180002952.01.T01:CDS
TAATAAGTGCAGCCTCGCCA+AGG 0.613858 1:-53716590 None:intergenic
TCAGACTTCTTCATCAACTG+AGG 0.616971 1:+53717555 MsG0180002952.01.T01:CDS
CAGTTGACAGAGAACAAGGA+AGG 0.619413 1:+53717739 MsG0180002952.01.T01:CDS
AACTGGCCTTCCATCAAACA+TGG 0.622596 1:-53719837 None:intergenic
GGTGTACATAAGAGGACCAG+AGG 0.624190 1:+53713900 MsG0180002952.01.T01:intron
TGCTGCTCCTGACATTGACT+GGG 0.628895 1:+53717420 MsG0180002952.01.T01:CDS
GGCATACTGCTGTAGTACGA+AGG 0.637207 1:-53718138 None:intergenic
AATTAAGGCTCAAATTGCAA+AGG 0.639084 1:+53715180 MsG0180002952.01.T01:CDS
GCATACTGCTGTAGTACGAA+GGG 0.641740 1:-53718137 None:intergenic
GTATCGACACTTGCCTGAGT+GGG 0.642803 1:+53713987 MsG0180002952.01.T01:CDS
TGTATCGACACTTGCCTGAG+TGG 0.643455 1:+53713986 MsG0180002952.01.T01:CDS
GGGATCAGAATCCTTAGGAA+GGG 0.647166 1:-53715212 None:intergenic
AGAAGTCTGAATGGCCTCAG+AGG 0.648406 1:-53717542 None:intergenic
ATCAATACTCTGTTGACCAG+TGG 0.648635 1:+53719875 MsG0180002952.01.T01:CDS
AATCCTTACCCAAGGAAGAG+GGG 0.653971 1:+53713762 MsG0180002952.01.T01:CDS
TGAAATCATTAATGCCTCTG+AGG 0.656287 1:+53717528 MsG0180002952.01.T01:CDS
AAGGCCAGTTAATATAATTG+GGG 0.665384 1:+53719850 MsG0180002952.01.T01:CDS
TGGAACTTTAGAAGAAACCG+AGG 0.679048 1:+53717480 MsG0180002952.01.T01:CDS
TGCAGAACTCGATCGCAAGG+AGG 0.696335 1:+53716807 MsG0180002952.01.T01:CDS
AAATCCAGAAGAAAGCAATG+TGG 0.719326 1:+53717393 MsG0180002952.01.T01:CDS
GCTACAAAATCAAGTACAGG+CGG 0.724221 1:+53718109 MsG0180002952.01.T01:CDS
GATTCTCGATGATCTATACG+AGG 0.740075 1:+53717798 MsG0180002952.01.T01:CDS
GTTAGCTGAATTGAAGAACG+AGG 0.745851 1:+53718076 MsG0180002952.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATACTGAATAAATTTAT+AGG + Chr1:53719980-53719999 MsG0180002952.01.T01:three_prime_UTR 10.0%
!! AAATACTGAATAAATTTATA+GGG + Chr1:53719981-53720000 MsG0180002952.01.T01:three_prime_UTR 10.0%
!! ACAAAAATTAACTTAAAAAT+AGG + Chr1:53714266-53714285 MsG0180002952.01.T01:intron 10.0%
!! TTTAAAAATAATGAATTTAG+TGG - Chr1:53718926-53718945 None:intergenic 10.0%
!!! AAAGACTATTTTAAATATTA+TGG - Chr1:53714401-53714420 None:intergenic 10.0%
!!! ATTTTTGTATGAAATTTTTA+TGG + Chr1:53718024-53718043 MsG0180002952.01.T01:intron 10.0%
!!! TTTTTTTACAAAATGTTTTT+TGG + Chr1:53714475-53714494 MsG0180002952.01.T01:intron 10.0%
!! AAAATTGAAAATAAATCACA+TGG - Chr1:53719486-53719505 None:intergenic 15.0%
!! ACAAAAATTAAGATTTAGTA+TGG - Chr1:53718012-53718031 None:intergenic 15.0%
!! AGAAAAAAAAAAACAAAGAA+TGG - Chr1:53718646-53718665 None:intergenic 15.0%
!! ATTGAAATTGAAATTGAAAA+CGG - Chr1:53715054-53715073 None:intergenic 15.0%
!! CTTGTTTGAATAAATTAATT+AGG + Chr1:53717229-53717248 MsG0180002952.01.T01:intron 15.0%
!! GTTATAAAAAAATGTCTATT+TGG + Chr1:53715299-53715318 MsG0180002952.01.T01:intron 15.0%
!! TAAATTAATTACCATCAATA+GGG - Chr1:53713513-53713532 None:intergenic 15.0%
!! TATATCATTTAGACAAATAA+AGG + Chr1:53718954-53718973 MsG0180002952.01.T01:intron 15.0%
!! TATTTAATTAAGTGTATGTT+TGG - Chr1:53716145-53716164 None:intergenic 15.0%
!! TTAAATCATTCTTAAATCAA+CGG + Chr1:53718054-53718073 MsG0180002952.01.T01:CDS 15.0%
!! TTAAATTAATTACCATCAAT+AGG - Chr1:53713514-53713533 None:intergenic 15.0%
!! TTGAATAAATTAATTAGGAT+TGG + Chr1:53717234-53717253 MsG0180002952.01.T01:intron 15.0%
!! TTGATACACAATAATTAATT+TGG + Chr1:53715414-53715433 MsG0180002952.01.T01:intron 15.0%
!!! AATAGACATTTTTTTATAAC+AGG - Chr1:53715299-53715318 None:intergenic 15.0%
!!! ATTTTATAAAACCATTTCAT+TGG - Chr1:53714582-53714601 None:intergenic 15.0%
!!! ATTTTTCTTCTATATTTTGT+CGG + Chr1:53713312-53713331 MsG0180002952.01.T01:intron 15.0%
!!! TTTTGAATTATTTGTATAGA+AGG + Chr1:53717190-53717209 MsG0180002952.01.T01:intron 15.0%
!! AAAAAAAAACAAAGAATGGA+AGG - Chr1:53718642-53718661 None:intergenic 20.0%
!! AAATCATACACCAAAATAAA+AGG + Chr1:53712214-53712233 MsG0180002952.01.T01:intron 20.0%
!! AATAAGAGAAATAGAGATAA+AGG - Chr1:53719607-53719626 None:intergenic 20.0%
!! AGGAAAACAATTTAATACTT+GGG - Chr1:53712623-53712642 None:intergenic 20.0%
!! ATAAAAAAAACAAACCTTCA+GGG - Chr1:53715255-53715274 None:intergenic 20.0%
!! ATAAGAGAAATAGAGATAAA+GGG - Chr1:53719606-53719625 None:intergenic 20.0%
!! ATGTGAAAATAAGAACAAAA+AGG - Chr1:53720022-53720041 None:intergenic 20.0%
!! GAGTTAAAATTGAAATTTGT+GGG + Chr1:53715559-53715578 MsG0180002952.01.T01:intron 20.0%
!! GTTCGTATATTAAATTTATG+AGG + Chr1:53713655-53713674 MsG0180002952.01.T01:intron 20.0%
!! TAGGAAAACAATTTAATACT+TGG - Chr1:53712624-53712643 None:intergenic 20.0%
!! TATATATATTCTTTGCGTTA+AGG + Chr1:53718343-53718362 MsG0180002952.01.T01:intron 20.0%
!! TGAGTTAAAATTGAAATTTG+TGG + Chr1:53715558-53715577 MsG0180002952.01.T01:intron 20.0%
!!! AAATATCAAGTAATACCTTT+TGG - Chr1:53718258-53718277 None:intergenic 20.0%
!!! AATTTCAGTTTCTTCAATTT+TGG + Chr1:53715071-53715090 MsG0180002952.01.T01:intron 20.0%
!!! ATTTTGTTATCTTTGAAGAA+TGG + Chr1:53715107-53715126 MsG0180002952.01.T01:CDS 20.0%
!!! CAATATTTTTACAATTTGAC+AGG - Chr1:53712154-53712173 None:intergenic 20.0%
!!! CATTGCTTTATCTTTTTTTA+GGG + Chr1:53716348-53716367 MsG0180002952.01.T01:CDS 20.0%
!!! TAATTAATTTGGTGTATGTT+TGG + Chr1:53715425-53715444 MsG0180002952.01.T01:intron 20.0%
!!! TAGTTCTTTTTATTTCAATC+AGG - Chr1:53712716-53712735 None:intergenic 20.0%
!!! TGTGTTTATTTTCTGTTAAA+TGG + Chr1:53716917-53716936 MsG0180002952.01.T01:intron 20.0%
!!! TTCCTTAATTATTTAGCTTA+CGG + Chr1:53714544-53714563 MsG0180002952.01.T01:intron 20.0%
!!! TTGTTGATTGTAAGAAATTT+TGG + Chr1:53716287-53716306 MsG0180002952.01.T01:intron 20.0%
! AAATAATTCAAAAGAGTTGC+AGG - Chr1:53717183-53717202 None:intergenic 25.0%
! AATGCAAAGTGATATTTCTT+TGG + Chr1:53718178-53718197 MsG0180002952.01.T01:CDS 25.0%
! AATTCTTCGTTTGATATTGT+TGG - Chr1:53717595-53717614 None:intergenic 25.0%
! ACAATATCAAACGAAGAATT+AGG + Chr1:53717595-53717614 MsG0180002952.01.T01:CDS 25.0%
! ACAGAGATATAACAATAACA+GGG + Chr1:53719349-53719368 MsG0180002952.01.T01:intron 25.0%
! AGACAATGAATTTGAGAAAA+TGG + Chr1:53712895-53712914 MsG0180002952.01.T01:intron 25.0%
! ATAGGAACTAAAAGTAATCA+TGG + Chr1:53714284-53714303 MsG0180002952.01.T01:intron 25.0%
! ATTGAAATTGAAAACGGAAA+TGG - Chr1:53715048-53715067 None:intergenic 25.0%
! ATTGTCAATATTATTTGGCT+AGG + Chr1:53716521-53716540 MsG0180002952.01.T01:intron 25.0%
! CATAAAAAAAACAAACCTTC+AGG - Chr1:53715256-53715275 None:intergenic 25.0%
! GAGGAGATATATACTTATTT+CGG + Chr1:53713937-53713956 MsG0180002952.01.T01:CDS 25.0%
! GTTATAAATGAAGCTATTTG+TGG + Chr1:53720122-53720141 MsG0180002952.01.T01:three_prime_UTR 25.0%
! TAAGAGAAATAGAGATAAAG+GGG - Chr1:53719605-53719624 None:intergenic 25.0%
! TAAGTATATATCTCCTCAAA+TGG - Chr1:53713934-53713953 None:intergenic 25.0%
! TAGCTTCATTTATAACATGT+CGG - Chr1:53720118-53720137 None:intergenic 25.0%
! TAGGAACTAAAAGTAATCAT+GGG + Chr1:53714285-53714304 MsG0180002952.01.T01:intron 25.0%
! TATATAAAATCTGACATAGC+TGG - Chr1:53718329-53718348 None:intergenic 25.0%
! TCGTCATTGTCAATATTATT+TGG + Chr1:53716516-53716535 MsG0180002952.01.T01:intron 25.0%
! TGAAAATAAATCACATGGTT+AGG - Chr1:53719481-53719500 None:intergenic 25.0%
! TGTTGAAGGAAAATTTGAAA+GGG + Chr1:53714328-53714347 MsG0180002952.01.T01:intron 25.0%
! TTAATATCTAGCCAATGAAA+TGG + Chr1:53714568-53714587 MsG0180002952.01.T01:intron 25.0%
! TTGATTGTGCAAAATTGATT+CGG + Chr1:53715480-53715499 MsG0180002952.01.T01:intron 25.0%
! TTGTCAATATTATTTGGCTA+GGG + Chr1:53716522-53716541 MsG0180002952.01.T01:intron 25.0%
! TTTGATTATATTGTTCTGCA+GGG + Chr1:53716948-53716967 MsG0180002952.01.T01:intron 25.0%
! TTTGGTATGGTTTATAAAAC+TGG - Chr1:53718764-53718783 None:intergenic 25.0%
!! AAAATTAGTTTGAACCAGTA+AGG + Chr1:53718855-53718874 MsG0180002952.01.T01:intron 25.0%
!! AAAGTATAACTCACTTGTTT+TGG - Chr1:53718519-53718538 None:intergenic 25.0%
!! AATGATTATGGTGGAAAAAT+TGG - Chr1:53712580-53712599 None:intergenic 25.0%
!! AATGTATTCTATTTGAAGCT+AGG - Chr1:53715618-53715637 None:intergenic 25.0%
!! ATTTAAGATCTCAAAGTTGT+TGG + Chr1:53718597-53718616 MsG0180002952.01.T01:intron 25.0%
!! GCTTCAAATAGAATACATTT+TGG + Chr1:53715619-53715638 MsG0180002952.01.T01:intron 25.0%
!! GTTAACAATCCATTTGAAAT+TGG - Chr1:53712856-53712875 None:intergenic 25.0%
!! TAATGTCAGATTAGAACTTT+TGG + Chr1:53716974-53716993 MsG0180002952.01.T01:CDS 25.0%
!! TCAAATAGAATACATTTTGG+AGG + Chr1:53715622-53715641 MsG0180002952.01.T01:intron 25.0%
!! TCCTTAATTATTTAGCTTAC+GGG + Chr1:53714545-53714564 MsG0180002952.01.T01:intron 25.0%
!! TGTAAGTAATGTGATCTTTT+TGG + Chr1:53716637-53716656 MsG0180002952.01.T01:intron 25.0%
!! TGTATGATTTTGTGAGAAAT+TGG - Chr1:53712204-53712223 None:intergenic 25.0%
!! TTAAATTGTTTTCCTAGTTG+AGG + Chr1:53712628-53712647 MsG0180002952.01.T01:intron 25.0%
!! TTGATTAAAAGTGAGTTGAA+TGG + Chr1:53715934-53715953 MsG0180002952.01.T01:intron 25.0%
!! TTGATTGTAAGAAATTTTGG+TGG + Chr1:53716290-53716309 MsG0180002952.01.T01:intron 25.0%
!!! AATTGTGAAATCTTTTGAGA+AGG + Chr1:53716557-53716576 MsG0180002952.01.T01:CDS 25.0%
!!! AATTTTGGCTCATCTTAAAA+TGG + Chr1:53715707-53715726 MsG0180002952.01.T01:intron 25.0%
!!! AGTGTATTTGCCTTTTATTT+TGG - Chr1:53712227-53712246 None:intergenic 25.0%
!!! ATACTTTTTCTTAGTGATTC+TGG + Chr1:53716475-53716494 MsG0180002952.01.T01:intron 25.0%
!!! ATCTAGTAATAGTTTTAGAG+AGG - Chr1:53718700-53718719 None:intergenic 25.0%
!!! CAATGTTTTAAACACCAAAT+TGG - Chr1:53719219-53719238 None:intergenic 25.0%
!!! CTTCAAGTTAGAAATGATTT+TGG + Chr1:53716028-53716047 MsG0180002952.01.T01:intron 25.0%
!!! CTTTATCTTTTTTTAGGGAT+TGG + Chr1:53716353-53716372 MsG0180002952.01.T01:CDS 25.0%
!!! CTTTTTAGCAGAATTGATTT+TGG - Chr1:53716056-53716075 None:intergenic 25.0%
!!! GATGTTTTGAAACAGTTTTA+AGG - Chr1:53714925-53714944 None:intergenic 25.0%
!!! GCAATTATTCATGAGTTTTT+TGG + Chr1:53714422-53714441 MsG0180002952.01.T01:intron 25.0%
!!! GCATTGCTTTATCTTTTTTT+AGG + Chr1:53716347-53716366 MsG0180002952.01.T01:CDS 25.0%
!!! GTTCAAACTAATTTTGAGAT+TGG - Chr1:53718850-53718869 None:intergenic 25.0%
!!! TAATGTGATCTTTTTGGTTT+TGG + Chr1:53716643-53716662 MsG0180002952.01.T01:intron 25.0%
!!! TACACATCTAGATTTGATTT+TGG + Chr1:53716102-53716121 MsG0180002952.01.T01:intron 25.0%
!!! TGATTGTAAGAAATTTTGGT+GGG + Chr1:53716291-53716310 MsG0180002952.01.T01:intron 25.0%
AAAATGGTGATAGTAGACTT+AGG - Chr1:53712813-53712832 None:intergenic 30.0%
AAATTCATTATCCATGGAGA+TGG + Chr1:53712659-53712678 MsG0180002952.01.T01:intron 30.0%
AACAAAAGCAAAAGATGGAA+TGG - Chr1:53712532-53712551 None:intergenic 30.0%
AACCACTATAACAAAATCTC+AGG + Chr1:53712307-53712326 MsG0180002952.01.T01:intron 30.0%
AAGAGAAATAGAGATAAAGG+GGG - Chr1:53719604-53719623 None:intergenic 30.0%
AAGGCCAGTTAATATAATTG+GGG + Chr1:53719850-53719869 MsG0180002952.01.T01:CDS 30.0%
AATTAAGGCTCAAATTGCAA+AGG + Chr1:53715180-53715199 MsG0180002952.01.T01:CDS 30.0%
AATTAGCTGCTACAATTGTT+AGG + Chr1:53711938-53711957 MsG0180002952.01.T01:intron 30.0%
ACAATTTAATACTTGGGAAG+AGG - Chr1:53712617-53712636 None:intergenic 30.0%
ACCCGTAAGCTAAATAATTA+AGG - Chr1:53714549-53714568 None:intergenic 30.0%
ACTTGAACAAAAGCAAAAGA+TGG - Chr1:53712537-53712556 None:intergenic 30.0%
AGAATTCGTTATCTTCATTG+TGG + Chr1:53718493-53718512 MsG0180002952.01.T01:CDS 30.0%
AGATATAACAATAACAGGGT+AGG + Chr1:53719353-53719372 MsG0180002952.01.T01:intron 30.0%
AGATATATACTTATTTCGGC+TGG + Chr1:53713941-53713960 MsG0180002952.01.T01:CDS 30.0%
AGATTTGTGTGTAGTAAAGA+AGG - Chr1:53712498-53712517 None:intergenic 30.0%
ATAAAAGGCAAATACACTAG+TGG + Chr1:53712229-53712248 MsG0180002952.01.T01:intron 30.0%
ATAATGATTGCAGAGATCTT+CGG + Chr1:53717258-53717277 MsG0180002952.01.T01:intron 30.0%
ATCACTCATATGTTTATCGA+GGG - Chr1:53717972-53717991 None:intergenic 30.0%
ATCATTTCTAACTTGAAGCT+AGG - Chr1:53716026-53716045 None:intergenic 30.0%
ATCTCCCCAATTATATTAAC+TGG - Chr1:53719857-53719876 None:intergenic 30.0%
ATTGAAAACGGAAATGGAAA+TGG - Chr1:53715042-53715061 None:intergenic 30.0%
CAATTTCATTGCTGACAAAT+AGG + Chr1:53718201-53718220 MsG0180002952.01.T01:CDS 30.0%
CACAGAGATATAACAATAAC+AGG + Chr1:53719348-53719367 MsG0180002952.01.T01:intron 30.0%
CAGTTAAATGGTAATATTGG+AGG - Chr1:53714811-53714830 None:intergenic 30.0%
CATATAATTTCCTATACCCT+TGG + Chr1:53717871-53717890 MsG0180002952.01.T01:intron 30.0%
CCACATAAACCAATTTCAAA+TGG + Chr1:53712844-53712863 MsG0180002952.01.T01:intron 30.0%
GAAGGCCAGTTAATATAATT+GGG + Chr1:53719849-53719868 MsG0180002952.01.T01:CDS 30.0%
GACAAGCTACAAAGATTTAT+AGG + Chr1:53718983-53719002 MsG0180002952.01.T01:intron 30.0%
GATATAACAATAACAGGGTA+GGG + Chr1:53719354-53719373 MsG0180002952.01.T01:intron 30.0%
GATATATACTTATTTCGGCT+GGG + Chr1:53713942-53713961 MsG0180002952.01.T01:CDS 30.0%
GCTCAGTTAAATGGTAATAT+TGG - Chr1:53714814-53714833 None:intergenic 30.0%
GGAAAGTTCACAAATTGATT+GGG + Chr1:53717453-53717472 MsG0180002952.01.T01:CDS 30.0%
GTATGGTTTATAAAACTGGA+AGG - Chr1:53718760-53718779 None:intergenic 30.0%
GTGTTGAAGGAAAATTTGAA+AGG + Chr1:53714327-53714346 MsG0180002952.01.T01:intron 30.0%
GTTGATATTTCTTGAGTGTA+TGG + Chr1:53713374-53713393 MsG0180002952.01.T01:intron 30.0%
GTTTGATTATATTGTTCTGC+AGG + Chr1:53716947-53716966 MsG0180002952.01.T01:intron 30.0%
TAGTATGGACATAGAAGAAT+AGG - Chr1:53717997-53718016 None:intergenic 30.0%
TATATATCTCCTCAAATGGA+AGG - Chr1:53713930-53713949 None:intergenic 30.0%
TATCACTCATATGTTTATCG+AGG - Chr1:53717973-53717992 None:intergenic 30.0%
TATTATGAAGTCCTTATCAG+AGG + Chr1:53716755-53716774 MsG0180002952.01.T01:intron 30.0%
TATTCTCTTGAAGTCTACTA+CGG + Chr1:53716403-53716422 MsG0180002952.01.T01:CDS 30.0%
TCAACAGCAACATTTAAAGA+TGG - Chr1:53717325-53717344 None:intergenic 30.0%
TCACTCAAATTCATTATCCA+TGG + Chr1:53712653-53712672 MsG0180002952.01.T01:intron 30.0%
TCTATTACTAAGACTATGTC+TGG + Chr1:53713479-53713498 MsG0180002952.01.T01:intron 30.0%
TCTGTCTAATTCAAAAGAAC+AGG - Chr1:53720047-53720066 None:intergenic 30.0%
TGGAAAGTTCACAAATTGAT+TGG + Chr1:53717452-53717471 MsG0180002952.01.T01:CDS 30.0%
TTAACAAACTATTGTGTGTC+TGG - Chr1:53712270-53712289 None:intergenic 30.0%
TTAATCTCGATGTGTATGTT+TGG - Chr1:53715735-53715754 None:intergenic 30.0%
TTATGATTCTCAACTCCAAA+AGG + Chr1:53718240-53718259 MsG0180002952.01.T01:CDS 30.0%
TTGCTGCTATTAAACTCAAA+TGG + Chr1:53711781-53711800 MsG0180002952.01.T01:intron 30.0%
TTGTTCCATTCCATATGAAT+CGG + Chr1:53719660-53719679 MsG0180002952.01.T01:intron 30.0%
! AAAACGTTTTGCTGCAATTA+AGG + Chr1:53715165-53715184 MsG0180002952.01.T01:CDS 30.0%
! AAATTGGTTTATGTGGATTG+TGG - Chr1:53712840-53712859 None:intergenic 30.0%
! AGCCATTATGATTTGAAACT+TGG + Chr1:53712369-53712388 MsG0180002952.01.T01:intron 30.0%
! CATTATGATTTGAAACTTGG+CGG + Chr1:53712372-53712391 MsG0180002952.01.T01:intron 30.0%
! CCATTTGAAATTGGTTTATG+TGG - Chr1:53712847-53712866 None:intergenic 30.0%
! CTGTCTAGAAATCTGAAATT+TGG - Chr1:53718384-53718403 None:intergenic 30.0%
! GAGGCATTAATGATTTCATA+TGG - Chr1:53717526-53717545 None:intergenic 30.0%
! TCAAATTTTCCTTCAACACT+TGG - Chr1:53714326-53714345 None:intergenic 30.0%
! TGTTATCTTTGAAGAATGGT+TGG + Chr1:53715111-53715130 MsG0180002952.01.T01:CDS 30.0%
!! AACCTGAGATTTTGTTATAG+TGG - Chr1:53712312-53712331 None:intergenic 30.0%
!! GACTCTGAGGTTATTAATAT+TGG + Chr1:53717343-53717362 MsG0180002952.01.T01:CDS 30.0%
!! TACACGTCTAGAATCAATTT+TGG + Chr1:53715692-53715711 MsG0180002952.01.T01:intron 30.0%
!! TAGTTTGTTAAATTAGCCAC+TGG + Chr1:53712279-53712298 MsG0180002952.01.T01:intron 30.0%
!! TATTTGGATTAGTGTGTGTT+TGG + Chr1:53715315-53715334 MsG0180002952.01.T01:intron 30.0%
!! TGGTAAAATACCGTTTTGTT+AGG + Chr1:53714663-53714682 MsG0180002952.01.T01:intron 30.0%
!! TGTATGTTTGGTTTCACTTT+TGG - Chr1:53716133-53716152 None:intergenic 30.0%
!! TTTAGGGATTGGTTATTTAG+AGG + Chr1:53716364-53716383 MsG0180002952.01.T01:CDS 30.0%
!!! AAACTAATTTTGAGATTGGC+TGG - Chr1:53718846-53718865 None:intergenic 30.0%
!!! AACAATGCTTTTTCTCTGTT+TGG - Chr1:53719645-53719664 None:intergenic 30.0%
!!! AACTAATTTTGAGATTGGCT+GGG - Chr1:53718845-53718864 None:intergenic 30.0%
!!! AATAGTTTTAGAGAGGTGTA+GGG - Chr1:53718693-53718712 None:intergenic 30.0%
!!! AGGGATTTTTGGAATGATTA+TGG - Chr1:53712592-53712611 None:intergenic 30.0%
!!! ATTTGGTGTATGTTTGGTTT+TGG + Chr1:53715431-53715450 MsG0180002952.01.T01:intron 30.0%
!!! GAACTTGTACTTTTTTCCTT+TGG + Chr1:53720065-53720084 MsG0180002952.01.T01:three_prime_UTR 30.0%
!!! GATTTTTGGAATGATTATGG+TGG - Chr1:53712589-53712608 None:intergenic 30.0%
!!! TAATAGTTTTAGAGAGGTGT+AGG - Chr1:53718694-53718713 None:intergenic 30.0%
!!! TTTGGTGTATGTTTGGTTTT+GGG + Chr1:53715432-53715451 MsG0180002952.01.T01:intron 30.0%
!!! TTTTGGTGTTGTTGTTACTT+CGG + Chr1:53711604-53711623 MsG0180002952.01.T01:CDS 30.0%
AAACAGTGACAACATTTCAC+TGG + Chr1:53717046-53717065 MsG0180002952.01.T01:CDS 35.0%
AAATCCAGAAGAAAGCAATG+TGG + Chr1:53717393-53717412 MsG0180002952.01.T01:CDS 35.0%
AACATATTTGGTCGTCTTTC+AGG + Chr1:53716434-53716453 MsG0180002952.01.T01:CDS 35.0%
AAGCGGCTTCTATTATTTAC+AGG + Chr1:53713181-53713200 MsG0180002952.01.T01:intron 35.0%
AAGTCATAACGTGAAAAGAG+AGG + Chr1:53713204-53713223 MsG0180002952.01.T01:intron 35.0%
ACACTTTCATCCATGTTTGA+TGG + Chr1:53719827-53719846 MsG0180002952.01.T01:CDS 35.0%
ACAGCAACATTTAAAGATGG+AGG - Chr1:53717322-53717341 None:intergenic 35.0%
ACCGCTTAACAACTAATCAT+CGG - Chr1:53712452-53712471 None:intergenic 35.0%
ACGGAAAGTAGGAACATATT+TGG + Chr1:53716422-53716441 MsG0180002952.01.T01:CDS 35.0%
AGAACTCACTCAAACATGTT+TGG - Chr1:53715673-53715692 None:intergenic 35.0%
AGAATATGATGCACTGTTGA+CGG - Chr1:53714054-53714073 None:intergenic 35.0%
AGACAGACTAGTAAACTCTT+TGG + Chr1:53718398-53718417 MsG0180002952.01.T01:CDS 35.0%
AGTCATAACGTGAAAAGAGA+GGG + Chr1:53713205-53713224 MsG0180002952.01.T01:intron 35.0%
ATGAAGCTATTTGTGGTACT+TGG + Chr1:53720129-53720148 MsG0180002952.01.T01:three_prime_UTR 35.0%
ATTGCATTCCTCTAGATTAG+CGG + Chr1:53714115-53714134 MsG0180002952.01.T01:intron 35.0%
ATTTGAGTGAAACCTCAACT+AGG - Chr1:53712643-53712662 None:intergenic 35.0%
ATTTGTCAAATCCTTACCCA+AGG + Chr1:53713754-53713773 MsG0180002952.01.T01:CDS 35.0%
CAACTCAATTCAACAACTTC+TGG - Chr1:53714852-53714871 None:intergenic 35.0%
CAGTGTTCATTCAAGTAACA+AGG + Chr1:53717366-53717385 MsG0180002952.01.T01:CDS 35.0%
CATTGTCTCTATAGTATCAG+CGG - Chr1:53718162-53718181 None:intergenic 35.0%
CGCCAAGTTTCAAATCATAA+TGG - Chr1:53712374-53712393 None:intergenic 35.0%
CTTGTAATGTGTGAAAGATC+CGG + Chr1:53711811-53711830 MsG0180002952.01.T01:intron 35.0%
GATGATGTTCAATGTTCACT+AGG + Chr1:53713134-53713153 MsG0180002952.01.T01:intron 35.0%
GCATAAGATGGGATTAAATG+TGG + Chr1:53716325-53716344 MsG0180002952.01.T01:CDS 35.0%
GCATCATATTCTTGTAGATC+AGG + Chr1:53714062-53714081 MsG0180002952.01.T01:intron 35.0%
GGAAGGCCAGTTAATATAAT+TGG + Chr1:53719848-53719867 MsG0180002952.01.T01:CDS 35.0%
GGTGAAAATTGTAGTAGCTT+TGG - Chr1:53712183-53712202 None:intergenic 35.0%
GTCTTAAATGAATTCCTGAC+TGG - Chr1:53718816-53718835 None:intergenic 35.0%
TAAAGTCTCCAATCGTTAAG+TGG - Chr1:53712404-53712423 None:intergenic 35.0%
TAACGATTGGAGACTTTACA+GGG + Chr1:53712406-53712425 MsG0180002952.01.T01:intron 35.0%
TATATAACATGCTTGAGAGC+TGG + Chr1:53719320-53719339 MsG0180002952.01.T01:intron 35.0%
TATGAGTGAAACCAAGAACT+TGG - Chr1:53717855-53717874 None:intergenic 35.0%
TCACAAATTGATTGGGACAT+TGG + Chr1:53717460-53717479 MsG0180002952.01.T01:CDS 35.0%
TGAAATCATTAATGCCTCTG+AGG + Chr1:53717528-53717547 MsG0180002952.01.T01:CDS 35.0%
TGAGGTTCAATATGGTTGAA+CGG - Chr1:53719168-53719187 None:intergenic 35.0%
TTAACGATTGGAGACTTTAC+AGG + Chr1:53712405-53712424 MsG0180002952.01.T01:intron 35.0%
TTACACCTAACAATTGCTTC+CGG - Chr1:53711833-53711852 None:intergenic 35.0%
TTATAGTGGTTTCATACCAG+TGG - Chr1:53712298-53712317 None:intergenic 35.0%
TTCTTCTCTGCTCAGTTAAA+TGG - Chr1:53714823-53714842 None:intergenic 35.0%
TTGTTAACTGTTACCTTGAG+TGG + Chr1:53712868-53712887 MsG0180002952.01.T01:intron 35.0%
TTTAATGCTATTGCCCCTTT+GGG + Chr1:53719697-53719716 MsG0180002952.01.T01:intron 35.0%
TTTCATCCATGTTTGATGGA+AGG + Chr1:53719831-53719850 MsG0180002952.01.T01:CDS 35.0%
! AAAAAGTGATGTCGATTGGA+AGG - Chr1:53714992-53715011 None:intergenic 35.0%
! AAAGTGAGTTGAATGGAAAG+TGG + Chr1:53715941-53715960 MsG0180002952.01.T01:intron 35.0%
! AAGTGAGTTGAATGGAAAGT+GGG + Chr1:53715942-53715961 MsG0180002952.01.T01:intron 35.0%
! ATTGTATAGTCTTGAGCCAA+AGG - Chr1:53720084-53720103 None:intergenic 35.0%
! GATGTTTCTGTTCGTCTTAT+TGG - Chr1:53713352-53713371 None:intergenic 35.0%
! GGTATTTTACCAGTTGAGAT+AGG - Chr1:53714655-53714674 None:intergenic 35.0%
! TAGTTGTCAACCGATTCATA+TGG - Chr1:53719673-53719692 None:intergenic 35.0%
! TCTTTTTCCACGATAAAGTG+CGG - Chr1:53718724-53718743 None:intergenic 35.0%
! TGACATAGCTGGATTCTTTT+CGG - Chr1:53718318-53718337 None:intergenic 35.0%
! TGTGGATTGTGGAATGAAAA+TGG - Chr1:53712829-53712848 None:intergenic 35.0%
! TTTTAATGCTATTGCCCCTT+TGG + Chr1:53719696-53719715 MsG0180002952.01.T01:intron 35.0%
! TTTTTAACCCGCTAATCTAG+AGG - Chr1:53714126-53714145 None:intergenic 35.0%
!! AGTTGATGAAGAAGTCTGAA+TGG - Chr1:53717554-53717573 None:intergenic 35.0%
!! ATGAAGTCAAGTTGAAAGAC+GGG + Chr1:53718436-53718455 MsG0180002952.01.T01:CDS 35.0%
!! CATGAAGTCAAGTTGAAAGA+CGG + Chr1:53718435-53718454 MsG0180002952.01.T01:CDS 35.0%
!! GAAAATTGTAGTAGCTTTGG+TGG - Chr1:53712180-53712199 None:intergenic 35.0%
!! TTAACTTGCGTGCATAAGAT+GGG + Chr1:53716314-53716333 MsG0180002952.01.T01:CDS 35.0%
!! TTATTGAGACCAAGTGTTGA+AGG + Chr1:53714314-53714333 MsG0180002952.01.T01:intron 35.0%
!!! AAAGATGGAATGGTTTTGTC+TGG - Chr1:53712522-53712541 None:intergenic 35.0%
!!! ATGAGGTTTGTTTTTGTGCA+GGG + Chr1:53713717-53713736 MsG0180002952.01.T01:intron 35.0%
!!! CTAAGTTTTGAGTGAATTGC+AGG + Chr1:53719757-53719776 MsG0180002952.01.T01:intron 35.0%
!!! GAAACAGTTTTAAGGAACGA+AGG - Chr1:53714917-53714936 None:intergenic 35.0%
!!! TATGAGGTTTGTTTTTGTGC+AGG + Chr1:53713716-53713735 MsG0180002952.01.T01:intron 35.0%
!!! TTGGTGTATGTTTGGTTTTG+GGG + Chr1:53715433-53715452 MsG0180002952.01.T01:intron 35.0%
AAAACAAACCTTCAGGGTCT+AGG - Chr1:53715249-53715268 None:intergenic 40.0%
AAAAGGGGATCAGAATCCTT+AGG - Chr1:53715220-53715239 None:intergenic 40.0%
AAACAAACCTTCAGGGTCTA+GGG - Chr1:53715248-53715267 None:intergenic 40.0%
AAAGGCTTCATCACTATCAG+AGG - Chr1:53719939-53719958 None:intergenic 40.0%
AAATCCTTACCCAAGGAAGA+GGG + Chr1:53713761-53713780 MsG0180002952.01.T01:CDS 40.0%
AAATTCTTACCCCTCTTCCT+TGG - Chr1:53713774-53713793 None:intergenic 40.0%
AACCAAGAACTTGGCAGAAT+AGG - Chr1:53717846-53717865 None:intergenic 40.0%
AAGATCCGGAAGCAATTGTT+AGG + Chr1:53711825-53711844 MsG0180002952.01.T01:intron 40.0%
AAGCTGTACTGCAAAACTTG+AGG + Chr1:53717281-53717300 MsG0180002952.01.T01:CDS 40.0%
AAGGAAGAGGGGTAAGAATT+TGG + Chr1:53713773-53713792 MsG0180002952.01.T01:intron 40.0%
AAGGTAAAGTGATTCGTGAC+TGG + Chr1:53715518-53715537 MsG0180002952.01.T01:intron 40.0%
AAGTCCTTATCAGAGGAAAC+AGG + Chr1:53716762-53716781 MsG0180002952.01.T01:intron 40.0%
AATGCAATACACACGGAAGT+CGG - Chr1:53714103-53714122 None:intergenic 40.0%
AATGGAAAGTGGGATATGCT+TGG + Chr1:53715952-53715971 MsG0180002952.01.T01:intron 40.0%
AATTCTTACCCCTCTTCCTT+GGG - Chr1:53713773-53713792 None:intergenic 40.0%
AATTTCCTATACCCTTGGAC+AGG + Chr1:53717876-53717895 MsG0180002952.01.T01:intron 40.0%
ACCACAACAAGCACTCTATA+AGG - Chr1:53711521-53711540 None:intergenic 40.0%
ACTCATATGTTTATCGAGGG+TGG - Chr1:53717969-53717988 None:intergenic 40.0%
ACTTCCACATTGCTTTCTTC+TGG - Chr1:53717400-53717419 None:intergenic 40.0%
AGTTTGAACCAGTAAGGAAC+TGG + Chr1:53718861-53718880 MsG0180002952.01.T01:intron 40.0%
ATAACAATAACAGGGTAGGG+TGG + Chr1:53719357-53719376 MsG0180002952.01.T01:intron 40.0%
ATCAATACTCTGTTGACCAG+TGG + Chr1:53719875-53719894 MsG0180002952.01.T01:CDS 40.0%
ATCTCAGTTGACAGAGAACA+AGG + Chr1:53717735-53717754 MsG0180002952.01.T01:CDS 40.0%
CAAATACGTTGAAGCTTGTC+AGG + Chr1:53716864-53716883 MsG0180002952.01.T01:CDS 40.0%
CAGACTAGTAAACTCTTTGG+AGG + Chr1:53718401-53718420 MsG0180002952.01.T01:CDS 40.0%
CCAAAAATAGTAGCACGTGA+CGG + Chr1:53713075-53713094 MsG0180002952.01.T01:intron 40.0%
CGAGAAAAAGTGATGTCGAT+TGG - Chr1:53714996-53715015 None:intergenic 40.0%
CTAGAGGAATGCAATACACA+CGG - Chr1:53714110-53714129 None:intergenic 40.0%
CTCACACTGAAAAGGATGTA+AGG + Chr1:53717102-53717121 MsG0180002952.01.T01:intron 40.0%
CTCACATGCAGATATATGCT+GGG + Chr1:53717618-53717637 MsG0180002952.01.T01:CDS 40.0%
CTCATATGTTTATCGAGGGT+GGG - Chr1:53717968-53717987 None:intergenic 40.0%
CTGAAGCTTGAGGTTCAATA+TGG - Chr1:53719176-53719195 None:intergenic 40.0%
CTGACAAGCTTCAACGTATT+TGG - Chr1:53716866-53716885 None:intergenic 40.0%
CTTACTGCTTGATCGTTTGA+AGG + Chr1:53713862-53713881 MsG0180002952.01.T01:intron 40.0%
GAAATATCCCAGTCAATGTC+AGG - Chr1:53717430-53717449 None:intergenic 40.0%
GACAACGTCAAATACTAGTG+AGG + Chr1:53712951-53712970 MsG0180002952.01.T01:intron 40.0%
GATTCTCGATGATCTATACG+AGG + Chr1:53717798-53717817 MsG0180002952.01.T01:CDS 40.0%
GCTACAAAATCAAGTACAGG+CGG + Chr1:53718109-53718128 MsG0180002952.01.T01:CDS 40.0%
GCTTGTTCTATTAGTGGCAA+TGG + Chr1:53711493-53711512 MsG0180002952.01.T01:CDS 40.0%
GTCGCTACAAAATCAAGTAC+AGG + Chr1:53718106-53718125 MsG0180002952.01.T01:CDS 40.0%
GTTAGCTGAATTGAAGAACG+AGG + Chr1:53718076-53718095 MsG0180002952.01.T01:CDS 40.0%
GTTCAACTAGTCAAACTGGA+CGG - Chr1:53718787-53718806 None:intergenic 40.0%
GTTCTCTGTCAACTGAGATA+AGG - Chr1:53717734-53717753 None:intergenic 40.0%
TAATACTTGGGAAGAGGCAA+GGG - Chr1:53712611-53712630 None:intergenic 40.0%
TCAAACGATCAAGCAGTAAG+CGG - Chr1:53713862-53713881 None:intergenic 40.0%
TCAGACTTCTTCATCAACTG+AGG + Chr1:53717555-53717574 MsG0180002952.01.T01:CDS 40.0%
TCATTGTCTTTGTCCACTCA+AGG - Chr1:53712884-53712903 None:intergenic 40.0%
TCTTCATCAACTGAGGATGT+CGG + Chr1:53717562-53717581 MsG0180002952.01.T01:CDS 40.0%
TGAAGTCTACTACGGAAAGT+AGG + Chr1:53716411-53716430 MsG0180002952.01.T01:CDS 40.0%
TGAGGTCTGACCTAACAAAA+CGG - Chr1:53714676-53714695 None:intergenic 40.0%
TGTAGTCACTATCCACCAAA+AGG - Chr1:53719957-53719976 None:intergenic 40.0%
TGTGTGCTCGTTCAATGTTA+GGG + Chr1:53718539-53718558 MsG0180002952.01.T01:intron 40.0%
TGTTATGGAAGAAGAGGAAG+CGG + Chr1:53713164-53713183 MsG0180002952.01.T01:intron 40.0%
TTAAAACCGGTGGTTAGAAG+TGG + Chr1:53718894-53718913 MsG0180002952.01.T01:intron 40.0%
TTAATACTTGGGAAGAGGCA+AGG - Chr1:53712612-53712631 None:intergenic 40.0%
TTAGAAGAAACCGAGGATAC+CGG + Chr1:53717487-53717506 MsG0180002952.01.T01:CDS 40.0%
TTCAAACCACTTCTAACCAC+CGG - Chr1:53718903-53718922 None:intergenic 40.0%
TTCACACACAAGTGAAGCAT+TGG - Chr1:53714716-53714735 None:intergenic 40.0%
TTGAGAAGTCCTATCTCAAC+TGG + Chr1:53714643-53714662 MsG0180002952.01.T01:intron 40.0%
TTGCATTCCTCTAGATTAGC+GGG + Chr1:53714116-53714135 MsG0180002952.01.T01:intron 40.0%
TTGTGTGCTCGTTCAATGTT+AGG + Chr1:53718538-53718557 MsG0180002952.01.T01:intron 40.0%
TTTGAGTGAATTGCAGGATG+CGG + Chr1:53719763-53719782 MsG0180002952.01.T01:intron 40.0%
! AAACGTTTTCGCCAATCAGA+AGG - Chr1:53715154-53715173 None:intergenic 40.0%
! AAGTGATAATGCCACATTCG+AGG + Chr1:53713241-53713260 MsG0180002952.01.T01:intron 40.0%
! ACCTTATAGAGTGCTTGTTG+TGG + Chr1:53711517-53711536 MsG0180002952.01.T01:CDS 40.0%
! AGGGTCTAGGGTTTGAAAAA+GGG - Chr1:53715236-53715255 None:intergenic 40.0%
! AGTGATAATGCCACATTCGA+GGG + Chr1:53713242-53713261 MsG0180002952.01.T01:intron 40.0%
! ATAGTGATGAAGCCTTTTGG+TGG + Chr1:53719942-53719961 MsG0180002952.01.T01:three_prime_UTR 40.0%
! ATGAATTCCTGACTGGTTCA+CGG - Chr1:53718809-53718828 None:intergenic 40.0%
! ATTATTTGGCTAGGGTGCTT+GGG + Chr1:53716530-53716549 MsG0180002952.01.T01:intron 40.0%
! CACCAAATTGGTAATTGAGC+CGG - Chr1:53719207-53719226 None:intergenic 40.0%
! CATTGACTGGGATATTTCAG+TGG + Chr1:53717432-53717451 MsG0180002952.01.T01:CDS 40.0%
! CGACTTGCTTGTTCTATTAG+TGG + Chr1:53711487-53711506 MsG0180002952.01.T01:CDS 40.0%
! CTGTGTTGTTATGGAAGAAG+AGG + Chr1:53713158-53713177 MsG0180002952.01.T01:intron 40.0%
! GAGAAGGATCATGTTTTCCT+TGG + Chr1:53716573-53716592 MsG0180002952.01.T01:CDS 40.0%
! GATGAATGAGTGTTGCAACA+GGG + Chr1:53712925-53712944 MsG0180002952.01.T01:intron 40.0%
! GCCGATGATTAGTTGTTAAG+CGG + Chr1:53712448-53712467 MsG0180002952.01.T01:intron 40.0%
! GGAATTTTCTTCCCTTCCTA+AGG + Chr1:53715201-53715220 MsG0180002952.01.T01:CDS 40.0%
! GTCAACCGATTCATATGGAA+TGG - Chr1:53719668-53719687 None:intergenic 40.0%
! GTTAAGCGGTCTCTTTTATC+TGG + Chr1:53712462-53712481 MsG0180002952.01.T01:intron 40.0%
! TATTATTTGGCTAGGGTGCT+TGG + Chr1:53716529-53716548 MsG0180002952.01.T01:intron 40.0%
! TCACACACAAGTGAAGCATT+GGG - Chr1:53714715-53714734 None:intergenic 40.0%
! TCACTAGGTCTGTGTTGTTA+TGG + Chr1:53713149-53713168 MsG0180002952.01.T01:intron 40.0%
! TGGAACTTTAGAAGAAACCG+AGG + Chr1:53717480-53717499 MsG0180002952.01.T01:CDS 40.0%
! TGGTCTGCCTAGTTTAAAAC+CGG + Chr1:53718881-53718900 MsG0180002952.01.T01:intron 40.0%
! TTGAAGAATGGTTGGTCGAT+CGG + Chr1:53715119-53715138 MsG0180002952.01.T01:CDS 40.0%
! TTTGAGATTGGCTGGGATAT+TGG - Chr1:53718838-53718857 None:intergenic 40.0%
!! AAAAAGAAGTGCTGCACTCT+CGG + Chr1:53716837-53716856 MsG0180002952.01.T01:CDS 40.0%
!! AAATGTTGCTGTTGACTCTG+AGG + Chr1:53717330-53717349 MsG0180002952.01.T01:CDS 40.0%
!! ATAGAGTGCTTGTTGTGGTT+GGG + Chr1:53711522-53711541 MsG0180002952.01.T01:CDS 40.0%
!! CTGATAGTGATGAAGCCTTT+TGG + Chr1:53719939-53719958 MsG0180002952.01.T01:three_prime_UTR 40.0%
!! GGAAAAGAGTACCTTCTGAT+TGG + Chr1:53715140-53715159 MsG0180002952.01.T01:CDS 40.0%
!! GTTAACTTGCGTGCATAAGA+TGG + Chr1:53716313-53716332 MsG0180002952.01.T01:CDS 40.0%
!! GTTTGAAGGTTGATGACATC+AGG + Chr1:53713876-53713895 MsG0180002952.01.T01:intron 40.0%
!! TATAGAGTGCTTGTTGTGGT+TGG + Chr1:53711521-53711540 MsG0180002952.01.T01:CDS 40.0%
!! TGGATTAGTGTGTGTTTGGT+TGG + Chr1:53715319-53715338 MsG0180002952.01.T01:intron 40.0%
!!! CTAACCACCGGTTTTAAACT+AGG - Chr1:53718891-53718910 None:intergenic 40.0%
!!! GACATCACTTTTTCTCGTCT+CGG + Chr1:53714999-53715018 MsG0180002952.01.T01:intron 40.0%
AAGATCCTGCTAAACGTGCT+TGG - Chr1:53717017-53717036 None:intergenic 45.0%
AAGCACGTTTAGCAGGATCT+TGG + Chr1:53717016-53717035 MsG0180002952.01.T01:CDS 45.0%
AATCCTTACCCAAGGAAGAG+GGG + Chr1:53713762-53713781 MsG0180002952.01.T01:CDS 45.0%
ACTAGTCAAACTGGACGGTT+TGG - Chr1:53718782-53718801 None:intergenic 45.0%
AGGAGGAGGCAATGTTGTAT+TGG + Chr1:53713288-53713307 MsG0180002952.01.T01:intron 45.0%
ATATGGACCCAAGCCATTAC+CGG - Chr1:53717509-53717528 None:intergenic 45.0%
ATCTGACTCAGGTGAATACG+TGG + Chr1:53713400-53713419 MsG0180002952.01.T01:intron 45.0%
ATGCACTGTTGACGGTTGTT+TGG - Chr1:53714046-53714065 None:intergenic 45.0%
CAAATCCTTACCCAAGGAAG+AGG + Chr1:53713760-53713779 MsG0180002952.01.T01:CDS 45.0%
CAACAGATAGCACACAACGA+CGG + Chr1:53713101-53713120 MsG0180002952.01.T01:intron 45.0%
CAAGAACTTGGCAGAATAGG+AGG - Chr1:53717843-53717862 None:intergenic 45.0%
CACGGTTCAACTAGTCAAAC+TGG - Chr1:53718791-53718810 None:intergenic 45.0%
CAGAGATGCTCACACTGAAA+AGG + Chr1:53717094-53717113 MsG0180002952.01.T01:CDS 45.0%
CAGTTGACAGAGAACAAGGA+AGG + Chr1:53717739-53717758 MsG0180002952.01.T01:CDS 45.0%
CATCAGGTGGTGTACATAAG+AGG + Chr1:53713892-53713911 MsG0180002952.01.T01:intron 45.0%
CTAGATACCGCACTTTATCG+TGG + Chr1:53718714-53718733 MsG0180002952.01.T01:intron 45.0%
CTCCTATTCTGCCAAGTTCT+TGG + Chr1:53717841-53717860 MsG0180002952.01.T01:intron 45.0%
CTGTGAGTGAGAACTACTCT+GGG - Chr1:53719396-53719415 None:intergenic 45.0%
GAATGCATCAAATGCCGTAC+TGG + Chr1:53717684-53717703 MsG0180002952.01.T01:CDS 45.0%
GAATGGAAGGAAGAGAGACA+AGG - Chr1:53718629-53718648 None:intergenic 45.0%
GCATACTGCTGTAGTACGAA+GGG - Chr1:53718140-53718159 None:intergenic 45.0%
GCATTGCGAATGAAGATCAC+AGG - Chr1:53714947-53714966 None:intergenic 45.0%
GCTCACATGCAGATATATGC+TGG + Chr1:53717617-53717636 MsG0180002952.01.T01:CDS 45.0%
GGAAGTCTCCACTTAACGAT+TGG + Chr1:53712393-53712412 MsG0180002952.01.T01:intron 45.0%
GGAGGAGGCAATGTTGTATT+GGG + Chr1:53713289-53713308 MsG0180002952.01.T01:intron 45.0%
GGGATCAGAATCCTTAGGAA+GGG - Chr1:53715215-53715234 None:intergenic 45.0%
GTGTATGGTGAATCTGACTC+AGG + Chr1:53713389-53713408 MsG0180002952.01.T01:intron 45.0%
GTGTGCTCGTTCAATGTTAG+GGG + Chr1:53718540-53718559 MsG0180002952.01.T01:intron 45.0%
GTTTCTTTCTGCCTGTCCAA+GGG - Chr1:53717890-53717909 None:intergenic 45.0%
TAACATGCTTGAGAGCTGGA+AGG + Chr1:53719324-53719343 MsG0180002952.01.T01:intron 45.0%
TACATAAGAGGACCAGAGGA+AGG + Chr1:53713904-53713923 MsG0180002952.01.T01:intron 45.0%
TAGTGAGGAGACAACGACAA+TGG + Chr1:53712966-53712985 MsG0180002952.01.T01:intron 45.0%
TCAAGCTTCAGTACCTTCAC+CGG + Chr1:53719185-53719204 MsG0180002952.01.T01:intron 45.0%
TCACTGTGTCAGTGTAGTGT+TGG - Chr1:53711914-53711933 None:intergenic 45.0%
TCAGGTGAATACGTGGTCAT+GGG + Chr1:53713407-53713426 MsG0180002952.01.T01:intron 45.0%
TGACAGAGAACAAGGAAGGA+AGG + Chr1:53717743-53717762 MsG0180002952.01.T01:CDS 45.0%
TGCACCTGTTTCCTCTGATA+AGG - Chr1:53716769-53716788 None:intergenic 45.0%
TGCACTGTTGACGGTTGTTT+GGG - Chr1:53714045-53714064 None:intergenic 45.0%
TGCGGCTGTGACAAAAACAA+AGG + Chr1:53719781-53719800 MsG0180002952.01.T01:CDS 45.0%
TGGAAGGTTGCGAATATCGT+CGG - Chr1:53714976-53714995 None:intergenic 45.0%
TGTACTCCGTGTCTAAAAGC+TGG - Chr1:53717771-53717790 None:intergenic 45.0%
TGTGAGTGAGAACTACTCTG+GGG - Chr1:53719395-53719414 None:intergenic 45.0%
TGTTTCTTTCTGCCTGTCCA+AGG - Chr1:53717891-53717910 None:intergenic 45.0%
TTATCCATGGAGATGGCTTG+TGG + Chr1:53712666-53712685 MsG0180002952.01.T01:intron 45.0%
TTTCAAACCCTAGACCCTGA+AGG + Chr1:53715238-53715257 MsG0180002952.01.T01:CDS 45.0%
! AAGGAGCCAGCTTTTAGACA+CGG + Chr1:53717762-53717781 MsG0180002952.01.T01:CDS 45.0%
! AGAAGACTGGTTGTCCAGTA+CGG - Chr1:53717701-53717720 None:intergenic 45.0%
! ATTGGTAATTGAGCCGGTGA+AGG - Chr1:53719201-53719220 None:intergenic 45.0%
! CAGGGTCTAGGGTTTGAAAA+AGG - Chr1:53715237-53715256 None:intergenic 45.0%
! CCTACAGGTTGGGATTTAGA+CGG + Chr1:53716894-53716913 MsG0180002952.01.T01:intron 45.0%
! CGATGAATGAGTGTTGCAAC+AGG + Chr1:53712924-53712943 MsG0180002952.01.T01:intron 45.0%
! GGGTCTAGGGTTTGAAAAAG+GGG - Chr1:53715235-53715254 None:intergenic 45.0%
! GTCAACTGAGATAAGGCATC+TGG - Chr1:53717727-53717746 None:intergenic 45.0%
! TCTGCCTAGTTTAAAACCGG+TGG + Chr1:53718884-53718903 MsG0180002952.01.T01:intron 45.0%
!! AACTGGCCTTCCATCAAACA+TGG - Chr1:53719840-53719859 None:intergenic 45.0%
!! CAAGTTGAAAGACGGGTTGA+AGG + Chr1:53718443-53718462 MsG0180002952.01.T01:CDS 45.0%
!! CACACACAAGTGAAGCATTG+GGG - Chr1:53714714-53714733 None:intergenic 45.0%
!! CACCGGCTCAATTACCAATT+TGG + Chr1:53719202-53719221 MsG0180002952.01.T01:intron 45.0%
!! CATCGGCTTGAAACAAGAAC+TGG - Chr1:53712435-53712454 None:intergenic 45.0%
!! CCGTCACGTGCTACTATTTT+TGG - Chr1:53713078-53713097 None:intergenic 45.0%
!! TCAAACTGGACGGTTTGGTA+TGG - Chr1:53718777-53718796 None:intergenic 45.0%
!! TGAAGGTTGATGACATCAGG+TGG + Chr1:53713879-53713898 MsG0180002952.01.T01:intron 45.0%
!! TGGTGTTGTTGTGTGCTCTT+TGG - Chr1:53713058-53713077 None:intergenic 45.0%
!!! ATCACTTTTTCTCGTCTCGG+AGG + Chr1:53715002-53715021 MsG0180002952.01.T01:intron 45.0%
!!! GGTTTGTTTTTGTGCAGGGA+TGG + Chr1:53713721-53713740 MsG0180002952.01.T01:intron 45.0%
!!! TTTGGTTCAGCTGCTGGTTT+TGG + Chr1:53711642-53711661 MsG0180002952.01.T01:intron 45.0%
!! ATAAATTTAGTATATTTATA+AGG + Chr1:53714359-53714378 MsG0180002952.01.T01:intron 5.0%
AAGCCAGTGAAAGAGCCCAA+AGG - Chr1:53719715-53719734 None:intergenic 50.0%
AAGTGTCTCTTCACCCACTC+AGG - Chr1:53714003-53714022 None:intergenic 50.0%
ACTCTGTTGACCAGTGGTCT+TGG + Chr1:53719881-53719900 MsG0180002952.01.T01:CDS 50.0%
AGAAGTCTGAATGGCCTCAG+AGG - Chr1:53717545-53717564 None:intergenic 50.0%
AGAGGAAGGCCTTCCATTTG+AGG + Chr1:53713918-53713937 MsG0180002952.01.T01:CDS 50.0%
AGCACGACGGTGGTAATCAA+TGG + Chr1:53713010-53713029 MsG0180002952.01.T01:intron 50.0%
AGCCAGTGAAAGAGCCCAAA+GGG - Chr1:53719714-53719733 None:intergenic 50.0%
AGGAGTTGCAAGAGAGAGAG+AGG + Chr1:53713265-53713284 MsG0180002952.01.T01:intron 50.0%
AGGCATCTGGAAGAGAAGAC+TGG - Chr1:53717714-53717733 None:intergenic 50.0%
AGTGGGTGAAGAGACACTTC+GGG + Chr1:53714004-53714023 MsG0180002952.01.T01:intron 50.0%
AGTTGAACCGTGAACCAGTC+AGG + Chr1:53718799-53718818 MsG0180002952.01.T01:intron 50.0%
AGTTGCAAGAGAGAGAGAGG+AGG + Chr1:53713268-53713287 MsG0180002952.01.T01:intron 50.0%
ATATGCCATGCACCAGGAGA+TGG + Chr1:53713802-53713821 MsG0180002952.01.T01:intron 50.0%
CAAGCCATTACCGGTATCCT+CGG - Chr1:53717500-53717519 None:intergenic 50.0%
CACTTCCAAGCACGTTTAGC+AGG + Chr1:53717009-53717028 MsG0180002952.01.T01:CDS 50.0%
CAGGTGAATACGTGGTCATG+GGG + Chr1:53713408-53713427 MsG0180002952.01.T01:intron 50.0%
CCGTCTAAATCCCAACCTGT+AGG - Chr1:53716897-53716916 None:intergenic 50.0%
CGGTGGTAATCAATGGAGCA+CGG + Chr1:53713017-53713036 MsG0180002952.01.T01:intron 50.0%
CTCAGGTGAATACGTGGTCA+TGG + Chr1:53713406-53713425 MsG0180002952.01.T01:intron 50.0%
GAAACCGAGGATACCGGTAA+TGG + Chr1:53717493-53717512 MsG0180002952.01.T01:CDS 50.0%
GAGTGGGTGAAGAGACACTT+CGG + Chr1:53714003-53714022 MsG0180002952.01.T01:intron 50.0%
GATAATGCCACATTCGAGGG+AGG + Chr1:53713245-53713264 MsG0180002952.01.T01:intron 50.0%
GCACTGTTGACGGTTGTTTG+GGG - Chr1:53714044-53714063 None:intergenic 50.0%
GCTGTGAGTGAGAACTACTC+TGG - Chr1:53719397-53719416 None:intergenic 50.0%
GGAAGGTTGCGAATATCGTC+GGG - Chr1:53714975-53714994 None:intergenic 50.0%
GGAGACAACGACAATGGTGA+CGG + Chr1:53712972-53712991 MsG0180002952.01.T01:intron 50.0%
GGCATACTGCTGTAGTACGA+AGG - Chr1:53718141-53718160 None:intergenic 50.0%
GGGGATCAGAATCCTTAGGA+AGG - Chr1:53715216-53715235 None:intergenic 50.0%
GGTGTACATAAGAGGACCAG+AGG + Chr1:53713900-53713919 MsG0180002952.01.T01:intron 50.0%
GTCATGGGGAGGGATAACAT+TGG + Chr1:53713422-53713441 MsG0180002952.01.T01:intron 50.0%
GTTGAAGCTTGTCAGGAGCT+TGG + Chr1:53716871-53716890 MsG0180002952.01.T01:CDS 50.0%
TAATAAGTGCAGCCTCGCCA+AGG - Chr1:53716593-53716612 None:intergenic 50.0%
TAGGCAGACCAGTTCCTTAC+TGG - Chr1:53718872-53718891 None:intergenic 50.0%
TAGGTCAGACCTCATGACTG+AGG + Chr1:53714682-53714701 MsG0180002952.01.T01:intron 50.0%
TCAAATGGAAGGCCTTCCTC+TGG - Chr1:53713919-53713938 None:intergenic 50.0%
TCATCATGCTCCAAGACCAC+TGG - Chr1:53719894-53719913 None:intergenic 50.0%
TCCTGGTGCATGGCATATGT+GGG - Chr1:53713800-53713819 None:intergenic 50.0%
TCGGACTAAGCGTGTGTTGA+AGG + Chr1:53715499-53715518 MsG0180002952.01.T01:intron 50.0%
TGAATACGTGGTCATGGGGA+GGG + Chr1:53713412-53713431 MsG0180002952.01.T01:intron 50.0%
TTACCCCTCTTCCTTGGGTA+AGG - Chr1:53713768-53713787 None:intergenic 50.0%
TTCCTCAACCGCAACAGGAT+CGG - Chr1:53712350-53712369 None:intergenic 50.0%
TTGCTGCTCCTGACATTGAC+TGG + Chr1:53717419-53717438 MsG0180002952.01.T01:CDS 50.0%
! GAGGATACCGGTAATGGCTT+GGG + Chr1:53717499-53717518 MsG0180002952.01.T01:CDS 50.0%
! GGAAGTCGGTGAAAGCATGT+GGG - Chr1:53714089-53714108 None:intergenic 50.0%
! GGATCATGTTTTCCTTGGCG+AGG + Chr1:53716578-53716597 MsG0180002952.01.T01:CDS 50.0%
! GGGAAGAGGCAAGGGATTTT+TGG - Chr1:53712603-53712622 None:intergenic 50.0%
! GTATCGACACTTGCCTGAGT+GGG + Chr1:53713987-53714006 MsG0180002952.01.T01:CDS 50.0%
! TGCTGCTCCTGACATTGACT+GGG + Chr1:53717420-53717439 MsG0180002952.01.T01:CDS 50.0%
! TGTATCGACACTTGCCTGAG+TGG + Chr1:53713986-53714005 MsG0180002952.01.T01:CDS 50.0%
! TGTTGTTACTTCGGTGCGTG+CGG + Chr1:53711613-53711632 MsG0180002952.01.T01:intron 50.0%
! TTCTGCCTGTCCAAGGGTAT+AGG - Chr1:53717884-53717903 None:intergenic 50.0%
! TTGTTGTGGTTGGGCTTTGG+TGG + Chr1:53711531-53711550 MsG0180002952.01.T01:CDS 50.0%
!! AACGACAATGGTGACGGTGA+TGG + Chr1:53712978-53712997 MsG0180002952.01.T01:intron 50.0%
!! GAAAGACGGGTTGAAGGACT+TGG + Chr1:53718449-53718468 MsG0180002952.01.T01:CDS 50.0%
!! GGTGAAGGTACTGAAGCTTG+AGG - Chr1:53719186-53719205 None:intergenic 50.0%
!! TGCTTGTTGTGGTTGGGCTT+TGG + Chr1:53711528-53711547 MsG0180002952.01.T01:CDS 50.0%
!!! GACTGTTTTGGTTCAGCTGC+TGG + Chr1:53711636-53711655 MsG0180002952.01.T01:intron 50.0%
AAGAGAGAGAGAGGAGGAGG+AGG + Chr1:53713274-53713293 MsG0180002952.01.T01:intron 55.0%
AGGAGATGGCTTCCTACCAG+GGG + Chr1:53713816-53713835 MsG0180002952.01.T01:intron 55.0%
AGGAGCTTGGCCTACAGGTT+GGG + Chr1:53716884-53716903 MsG0180002952.01.T01:intron 55.0%
ATGGCTTCCTCAACCGCAAC+AGG - Chr1:53712355-53712374 None:intergenic 55.0%
ATTACCACCGTCGTGCTCCT+TGG - Chr1:53713007-53713026 None:intergenic 55.0%
CAACTCTCCCGATCCTGTTG+CGG + Chr1:53712339-53712358 MsG0180002952.01.T01:intron 55.0%
CACATCAGAATCCCCCTGGT+AGG - Chr1:53713831-53713850 None:intergenic 55.0%
CAGGAGATGGCTTCCTACCA+GGG + Chr1:53713815-53713834 MsG0180002952.01.T01:intron 55.0%
CCTGGTGCATGGCATATGTG+GGG - Chr1:53713799-53713818 None:intergenic 55.0%
CGAGGCTCAAGCTGTGGTAT+CGG + Chr1:53711567-53711586 MsG0180002952.01.T01:CDS 55.0%
CTCCTGGTGCATGGCATATG+TGG - Chr1:53713801-53713820 None:intergenic 55.0%
GCCAGTGAAAGAGCCCAAAG+GGG - Chr1:53719713-53719732 None:intergenic 55.0%
GCTTGCAGAACTCGATCGCA+AGG + Chr1:53716804-53716823 MsG0180002952.01.T01:CDS 55.0%
GGACTTGGCTACTAAGCGCA+TGG + Chr1:53718464-53718483 MsG0180002952.01.T01:CDS 55.0%
GGGTTCGAACCTCAGTCATG+AGG - Chr1:53714694-53714713 None:intergenic 55.0%
GGTGCTCTGCGAAAAGTGGA+GGG + Chr1:53713963-53713982 MsG0180002952.01.T01:CDS 55.0%
GTGAATACGTGGTCATGGGG+AGG + Chr1:53713411-53713430 MsG0180002952.01.T01:intron 55.0%
GTTGCACATCAGAATCCCCC+TGG - Chr1:53713835-53713854 None:intergenic 55.0%
TCCTCAACCGCAACAGGATC+GGG - Chr1:53712349-53712368 None:intergenic 55.0%
TGCAACTCCTCCCTCGAATG+TGG - Chr1:53713255-53713274 None:intergenic 55.0%
TGCAAGAGAGAGAGAGGAGG+AGG + Chr1:53713271-53713290 MsG0180002952.01.T01:intron 55.0%
TGCACCACAAGCCATCTCCA+TGG - Chr1:53712673-53712692 None:intergenic 55.0%
TGCAGAACTCGATCGCAAGG+AGG + Chr1:53716807-53716826 MsG0180002952.01.T01:CDS 55.0%
TGCTTTCGAGGCTCAAGCTG+TGG + Chr1:53711561-53711580 MsG0180002952.01.T01:CDS 55.0%
TGGCAGTGCGACCCTATTGA+TGG + Chr1:53713499-53713518 MsG0180002952.01.T01:intron 55.0%
TTGTCAGGAGCTTGGCCTAC+AGG + Chr1:53716879-53716898 MsG0180002952.01.T01:CDS 55.0%
! ATGGCAACCAAGGAGCACGA+CGG + Chr1:53712997-53713016 MsG0180002952.01.T01:intron 55.0%
! CGAGGATACCGGTAATGGCT+TGG + Chr1:53717498-53717517 MsG0180002952.01.T01:CDS 55.0%
! CGGAAGTCGGTGAAAGCATG+TGG - Chr1:53714090-53714109 None:intergenic 55.0%
! GTTGTTACTTCGGTGCGTGC+GGG + Chr1:53711614-53711633 MsG0180002952.01.T01:intron 55.0%
!! GGTGGCTTGTTGTGCTTTCG+AGG + Chr1:53711549-53711568 MsG0180002952.01.T01:CDS 55.0%
CAGGAGCTTGGCCTACAGGT+TGG + Chr1:53716883-53716902 MsG0180002952.01.T01:intron 60.0%
CCAGGAGATGGCTTCCTACC+AGG + Chr1:53713814-53713833 MsG0180002952.01.T01:intron 60.0%
CCCCACATATGCCATGCACC+AGG + Chr1:53713796-53713815 MsG0180002952.01.T01:intron 60.0%
CCTGGTAGGAAGCCATCTCC+TGG - Chr1:53713817-53713836 None:intergenic 60.0%
GCCCCTTTGGGCTCTTTCAC+TGG + Chr1:53719709-53719728 MsG0180002952.01.T01:intron 60.0%
GCTGGGTGCTCTGCGAAAAG+TGG + Chr1:53713959-53713978 MsG0180002952.01.T01:CDS 60.0%
GGAAGCCATCTCCTGGTGCA+TGG - Chr1:53713810-53713829 None:intergenic 60.0%
GGAGATGGCTTCCTACCAGG+GGG + Chr1:53713817-53713836 MsG0180002952.01.T01:intron 60.0%
GGGTGCTCTGCGAAAAGTGG+AGG + Chr1:53713962-53713981 MsG0180002952.01.T01:CDS 60.0%
TCCCGATCCTGTTGCGGTTG+AGG + Chr1:53712345-53712364 MsG0180002952.01.T01:intron 60.0%
! GGTGACGGTGATGGCAACCA+AGG + Chr1:53712987-53713006 MsG0180002952.01.T01:intron 60.0%
! CGGTGCGTGCGGGACTGTTT+TGG + Chr1:53711624-53711643 MsG0180002952.01.T01:intron 65.0%
! GCAACCAAGGAGCACGACGG+TGG + Chr1:53713000-53713019 MsG0180002952.01.T01:intron 65.0%
!! AGCTGTGGTATCGGCGCGTG+CGG + Chr1:53711576-53711595 MsG0180002952.01.T01:CDS 65.0%
! CGGCGCGTGCGGGACTGTTT+TGG + Chr1:53711587-53711606 MsG0180002952.01.T01:CDS 70.0%
!! GCTGTGGTATCGGCGCGTGC+GGG + Chr1:53711577-53711596 MsG0180002952.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 53711461 53720183 53711461 ID=MsG0180002952.01;Name=MsG0180002952.01
Chr1 mRNA 53711461 53720183 53711461 ID=MsG0180002952.01.T01;Parent=MsG0180002952.01;Name=MsG0180002952.01.T01;_AED=0.37;_eAED=0.42;_QI=0|0.63|0.58|0.91|0.90|0.83|12|273|693
Chr1 exon 53711461 53711629 53711461 ID=MsG0180002952.01.T01:exon:2747;Parent=MsG0180002952.01.T01
Chr1 exon 53713738 53713783 53713738 ID=MsG0180002952.01.T01:exon:2748;Parent=MsG0180002952.01.T01
Chr1 exon 53713912 53714008 53713912 ID=MsG0180002952.01.T01:exon:2749;Parent=MsG0180002952.01.T01
Chr1 exon 53715079 53715281 53715079 ID=MsG0180002952.01.T01:exon:2750;Parent=MsG0180002952.01.T01
Chr1 exon 53716301 53716463 53716301 ID=MsG0180002952.01.T01:exon:2751;Parent=MsG0180002952.01.T01
Chr1 exon 53716543 53716637 53716543 ID=MsG0180002952.01.T01:exon:2752;Parent=MsG0180002952.01.T01
Chr1 exon 53716765 53716900 53716765 ID=MsG0180002952.01.T01:exon:2753;Parent=MsG0180002952.01.T01
Chr1 exon 53716969 53717118 53716969 ID=MsG0180002952.01.T01:exon:2754;Parent=MsG0180002952.01.T01
Chr1 exon 53717271 53717819 53717271 ID=MsG0180002952.01.T01:exon:2755;Parent=MsG0180002952.01.T01
Chr1 exon 53718053 53718261 53718053 ID=MsG0180002952.01.T01:exon:2756;Parent=MsG0180002952.01.T01
Chr1 exon 53718392 53718524 53718392 ID=MsG0180002952.01.T01:exon:2757;Parent=MsG0180002952.01.T01
Chr1 exon 53719779 53720183 53719779 ID=MsG0180002952.01.T01:exon:2758;Parent=MsG0180002952.01.T01
Chr1 CDS 53711461 53711629 53711461 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53713738 53713783 53713738 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53713912 53714008 53713912 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53715079 53715281 53715079 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53716301 53716463 53716301 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53716543 53716637 53716543 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53716765 53716900 53716765 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53716969 53717118 53716969 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53717271 53717819 53717271 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53718053 53718261 53718053 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53718392 53718524 53718392 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 CDS 53719779 53719910 53719779 ID=MsG0180002952.01.T01:cds;Parent=MsG0180002952.01.T01
Chr1 three_prime_UTR 53719911 53720183 53719911 ID=MsG0180002952.01.T01:three_prime_utr;Parent=MsG0180002952.01.T01
Gene Sequence

>MsG0180002952.01.T01

ATGGGGGTTAAGTCGATTGCGAACGTCGACTTGCTTGTTCTATTAGTGGCAATGGAACCTTATAGAGTGCTTGTTGTGGTTGGGCTTTGGTGGCTTGTTGTGCTTTCGAGGCTCAAGCTGTGGTATCGGCGCGTGCGGGACTGTTTTGGTGTTGTTGTTACTTCGGTGCGGATGGATTTTAGAGCATTTGTCAAATCCTTACCCAAGGAAGAGGGAGGACCAGAGGAAGGCCTTCCATTTGAGGAGATATATACTTATTTCGGCTGGGTGCTCTGCGAAAAGTGGAGGGTGTATCGACACTTGCCTGAGTGGTTTCTTCAATTTTGGTTTCTGATTTCGAATTTTGTTATCTTTGAAGAATGGTTGGTCGATCGGAAAAGAGTACCTTCTGATTGGCGAAAACGTTTTGCTGCAATTAAGGCTCAAATTGCAAAGGAATTTTCTTCCCTTCCTAAGGATTCTGATCCCCTTTTTCAAACCCTAGACCCTGAAGGTTTGTTTTTTTTATGTACTGTAAATTTTGGTGGGTTAACTTGCGTGCATAAGATGGGATTAAATGTGGCATTGCTTTATCTTTTTTTAGGGATTGGTTATTTAGAGGCTAAACAGATATATGATATTCTCTTGAAGTCTACTACGGAAAGTAGGAACATATTTGGTCGTCTTTCAGGTTCTGCGGGTGCTTGGGAAGCAATTGTGAAATCTTTTGAGAAGGATCATGTTTTCCTTGGCGAGGCTGCACTTATTATCACTCAAAACGTGAACTATGAAATTCCTTATCAGAGGAAACAGGTGCAGAAGATTCAACAGCAGCTTGCAGAACTCGATCGCAAGGAGGCTGATATAAAAAGAAGTGCTGCACTCTCGGCAGCCAAATACGTTGAAGCTTGTCAGGAGCTTGGCCTACAGGGACATAATGTCAGATTAGAACTTTTGGAGACAGCAAAATCACTTCCAAGCACGTTTAGCAGGATCTTGGAAGTTGTAAACAGTGACAACATTTCACTGGCGATCGAATATTATTGCAATTTTGTCAGAGATGCTCACACTGAAAAGGATAGATCTTCGGAAGCTGTACTGCAAAACTTGAGGAACATGCGTGAAAATCCTCCATCTTTAAATGTTGCTGTTGACTCTGAGGTTATTAATATTGGCAGTGTTCATTCAAGTAACAAGGAAACAAATCCAGAAGAAAGCAATGTGGAAGTTGCTGCTCCTGACATTGACTGGGATATTTCAGTGGAAAGTTCACAAATTGATTGGGACATTGGAACTTTAGAAGAAACCGAGGATACCGGTAATGGCTTGGGTCCATATGAAATCATTAATGCCTCTGAGGCCATTCAGACTTCTTCATCAACTGAGGATGTCGGATGTGATCCAACAATATCAAACGAAGAATTAGGCTCACATGCAGATATATGCTGGGACATTAGTGTTGAGTCTGCTCATGTTGATGTGATTGACGATGCGAATGCATCAAATGCCGTACTGGACAACCAGTCTTCTCTTCCAGATGCCTTATCTCAGTTGACAGAGAACAAGGAAGGAAGGAGCCAGCTTTTAGACACGGAGTACAGAAATAAGATTCTCGATGATCTATACGAGATTAAATCATTCTTAAATCAACGGTTAGCTGAATTGAAGAACGAGGAAACTTTGTCGCTACAAAATCAAGTACAGGCGGTTTCTCCCTTCGTACTACAGCAGTATGCCGCTGATACTATAGAGACAATGCAAAGTGATATTTCTTTGGCAATTTCATTGCTGACAAATAGGAAGACAAGAGATCTGATTATGATTCTCAACTCCAAAAGATTTCTAGACAGACTAGTAAACTCTTTGGAGGAAAAGAAACATCATGAAGTCAAGTTGAAAGACGGGTTGAAGGACTTGGCTACTAAGCGCATGGAACTACAGAATTCGTTATCTTCATTGTGGCCAAAACAAGATGCGGCTGTGACAAAAACAAAGGAACTGAAAAAACTGTGTGAGAGTACACTTTCATCCATGTTTGATGGAAGGCCAGTTAATATAATTGGGGAGATCAATACTCTGTTGACCAGTGGTCTTGGAGCATGA

Protein sequence

>MsG0180002952.01.T01

MGVKSIANVDLLVLLVAMEPYRVLVVVGLWWLVVLSRLKLWYRRVRDCFGVVVTSVRMDFRAFVKSLPKEEGGPEEGLPFEEIYTYFGWVLCEKWRVYRHLPEWFLQFWFLISNFVIFEEWLVDRKRVPSDWRKRFAAIKAQIAKEFSSLPKDSDPLFQTLDPEGLFFLCTVNFGGLTCVHKMGLNVALLYLFLGIGYLEAKQIYDILLKSTTESRNIFGRLSGSAGAWEAIVKSFEKDHVFLGEAALIITQNVNYEIPYQRKQVQKIQQQLAELDRKEADIKRSAALSAAKYVEACQELGLQGHNVRLELLETAKSLPSTFSRILEVVNSDNISLAIEYYCNFVRDAHTEKDRSSEAVLQNLRNMRENPPSLNVAVDSEVINIGSVHSSNKETNPEESNVEVAAPDIDWDISVESSQIDWDIGTLEETEDTGNGLGPYEIINASEAIQTSSSTEDVGCDPTISNEELGSHADICWDISVESAHVDVIDDANASNAVLDNQSSLPDALSQLTENKEGRSQLLDTEYRNKILDDLYEIKSFLNQRLAELKNEETLSLQNQVQAVSPFVLQQYAADTIETMQSDISLAISLLTNRKTRDLIMILNSKRFLDRLVNSLEEKKHHEVKLKDGLKDLATKRMELQNSLSSLWPKQDAAVTKTKELKKLCESTLSSMFDGRPVNIIGEINTLLTSGLGA*