AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020839.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020839.01.T01 MTR_2g028870 30.056 356 225 11 157 503 66 406 8.14e-41 154
MsG0480020839.01.T01 MTR_2g044420 34.300 207 124 4 294 498 70 266 1.75e-32 125
MsG0480020839.01.T01 MTR_2g044440 33.508 191 115 4 311 499 96 276 3.56e-30 119
MsG0480020839.01.T01 MTR_2g044290 33.333 204 124 3 299 500 68 261 8.17e-30 117
MsG0480020839.01.T01 MTR_3g462590 31.863 204 126 4 303 503 89 282 1.65e-28 115
MsG0480020839.01.T01 MTR_1g105460 33.898 177 107 4 329 503 121 289 7.27e-27 110
MsG0480020839.01.T01 MTR_5g062990 33.824 204 124 5 296 498 94 287 3.56e-26 108
MsG0480020839.01.T01 MTR_3g462570 33.673 196 118 4 311 503 46 232 5.34e-26 112
MsG0480020839.01.T01 MTR_3g462570 33.884 121 68 3 385 503 419 529 4.70e-12 68.9
MsG0480020839.01.T01 MTR_2g044250 31.527 203 121 5 311 505 69 261 6.62e-26 107
MsG0480020839.01.T01 MTR_2g044240 32.161 199 114 5 311 503 68 251 4.72e-25 104
MsG0480020839.01.T01 MTR_3g462560 32.804 189 111 5 311 496 53 228 5.04e-25 104
MsG0480020839.01.T01 MTR_0777s0010 30.808 198 124 5 310 503 246 434 4.13e-23 102
MsG0480020839.01.T01 MTR_3g463280 29.439 214 132 5 301 503 15 220 3.75e-22 96.3
MsG0480020839.01.T01 MTR_3g462500 27.363 201 135 4 299 496 50 242 1.03e-21 95.5
MsG0480020839.01.T01 MTR_8g022900 28.061 196 123 5 309 499 61 243 2.13e-21 94.4
MsG0480020839.01.T01 MTR_5g078410 31.739 230 117 10 277 503 130 322 8.10e-21 94.0
MsG0480020839.01.T01 MTR_3g463310 29.245 212 134 5 301 503 16 220 1.00e-20 91.7
MsG0480020839.01.T01 MTR_3g462530 35.526 152 87 3 354 503 46 188 1.63e-20 92.8
MsG0480020839.01.T01 MTR_4g063815 26.786 224 146 5 284 503 30 239 3.01e-20 90.9
MsG0480020839.01.T01 MTR_2g044260 28.761 226 138 5 293 505 63 278 3.37e-20 91.3
MsG0480020839.01.T01 MTR_4g063810 27.807 187 123 4 311 495 91 267 8.27e-19 87.4
MsG0480020839.01.T01 MTR_1g105450 35.075 134 78 3 371 503 3 128 7.09e-18 80.9
MsG0480020839.01.T01 MTR_1g105465 27.778 198 121 6 310 505 145 322 9.45e-18 85.1
MsG0480020839.01.T01 MTR_2g038640 28.829 222 104 10 277 496 130 299 9.26e-16 79.0
MsG0480020839.01.T01 MTR_3g014030 26.289 194 124 7 310 498 1521 1700 1.14e-15 80.9
MsG0480020839.01.T01 MTR_1g037750 26.289 194 124 7 310 498 224 403 2.49e-15 78.6
MsG0480020839.01.T01 MTR_3g462430 33.333 150 85 5 357 503 96 233 2.54e-15 76.3
MsG0480020839.01.T01 MTR_3g086770 24.742 194 127 7 310 498 1509 1688 4.08e-13 72.8
MsG0480020839.01.T01 MTR_3g462490 26.797 153 87 3 302 454 279 406 9.63e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020839.01.T01 AT5G60250 40.882 499 268 8 27 503 1 494 3.49e-126 383
MsG0480020839.01.T01 AT2G25370 44.236 373 192 6 133 503 132 490 2.42e-94 299
MsG0480020839.01.T01 AT3G45580 40.346 347 192 4 158 503 29 361 1.03e-88 278
MsG0480020839.01.T01 AT2G25370 43.164 373 169 7 133 503 102 433 1.13e-85 275
MsG0480020839.01.T01 AT3G43750 39.718 355 193 6 154 505 10 346 7.66e-81 256
MsG0480020839.01.T01 AT5G37560 40.220 363 200 5 142 503 21 367 3.49e-80 257
MsG0480020839.01.T01 AT2G25360 45.051 293 144 5 212 503 1 277 2.36e-76 245
MsG0480020839.01.T01 AT2G21420 38.360 378 200 8 133 503 21 372 1.13e-74 243
MsG0480020839.01.T01 AT2G26130 36.932 352 201 5 155 503 12 345 6.09e-72 234
MsG0480020839.01.T01 AT3G45570 38.387 310 170 7 159 463 18 311 1.57e-65 214
MsG0480020839.01.T01 AT2G19610 34.463 354 220 8 158 506 51 397 2.18e-63 212
MsG0480020839.01.T01 AT3G45540 42.222 270 146 4 238 503 25 288 5.05e-63 209
MsG0480020839.01.T01 AT3G45540 42.803 264 141 4 244 503 2 259 1.26e-62 207
MsG0480020839.01.T01 AT2G19610 33.898 354 223 7 158 506 51 398 2.16e-62 210
MsG0480020839.01.T01 AT2G26135 34.971 346 188 6 159 503 29 338 2.86e-61 206
MsG0480020839.01.T01 AT5G07640 37.459 307 184 6 159 462 9 310 3.29e-59 198
MsG0480020839.01.T01 AT3G45460 32.527 372 219 6 133 503 5 345 3.36e-59 201
MsG0480020839.01.T01 AT3G45480 34.770 348 189 7 159 503 21 333 5.68e-59 199
MsG0480020839.01.T01 AT3G45470 48.980 196 93 1 308 503 3 191 6.28e-58 192
MsG0480020839.01.T01 AT3G45555 48.500 200 95 4 309 506 15 208 3.97e-53 179
MsG0480020839.01.T01 AT3G45510 38.725 204 115 3 252 454 10 204 6.85e-41 148
MsG0480020839.01.T01 AT3G45560 32.000 275 166 6 158 427 13 271 2.65e-37 144
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT4G19670 30.471 361 230 11 152 503 54 402 3.83e-35 138
MsG0480020839.01.T01 AT3G53690 30.693 202 129 3 299 498 103 295 4.70e-27 111
MsG0480020839.01.T01 AT3G14250 27.962 211 138 4 299 503 83 285 5.13e-23 99.8
MsG0480020839.01.T01 AT3G45490 39.306 173 85 6 130 295 2 161 5.28e-22 94.7
MsG0480020839.01.T01 AT4G01020 26.425 193 122 6 311 498 1561 1738 2.70e-14 76.6
MsG0480020839.01.T01 AT5G10370 25.907 193 123 6 311 498 1564 1741 5.35e-14 75.5
MsG0480020839.01.T01 AT3G43180 38.835 103 54 3 274 375 30 124 6.05e-13 68.2

Find 134 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAAACAGCCCTTTATT+TGG 0.147814 4:-49456713 MsG0480020839.01.T01:five_prime_UTR
TTGAAGCGTGTTATTTATTT+TGG 0.158679 4:-49455908 MsG0480020839.01.T01:CDS
AGTAATTATAAAATCCAATT+TGG 0.201849 4:-49456661 MsG0480020839.01.T01:five_prime_UTR
AGACTACTCCAAAAGTCTTA+TGG 0.234580 4:-49453743 MsG0480020839.01.T01:CDS
CATAACACTCACTCCTTTAC+AGG 0.248161 4:-49456621 MsG0480020839.01.T01:five_prime_UTR
ACGATGATGGTCCGGTTGTT+AGG 0.253160 4:-49456132 MsG0480020839.01.T01:CDS
TTTGATATTGGAAATTTCTA+AGG 0.256945 4:-49456014 MsG0480020839.01.T01:CDS
CTCTGGCATCAAGGAGTCTT+TGG 0.274888 4:-49453573 MsG0480020839.01.T01:CDS
TACAGAACCCATAAGACTTT+TGG 0.276689 4:+49453735 None:intergenic
GACTACTCCAAAAGTCTTAT+GGG 0.293590 4:-49453742 MsG0480020839.01.T01:CDS
TTGGTCAGTTAAGTGGAAAA+TGG 0.293607 4:-49454263 MsG0480020839.01.T01:intron
AACTTCTAGTTGACAGTTGC+CGG 0.294527 4:-49453894 MsG0480020839.01.T01:CDS
AGTCAAAGTCTTGTTGTTCT+TGG 0.295431 4:+49456572 None:intergenic
AAAGCTAAAGTCCCAAATAA+AGG 0.303294 4:+49456701 None:intergenic
GAAAATTGCTGTGGAGCTTA+TGG 0.307792 4:-49455969 MsG0480020839.01.T01:CDS
GGCGGTGGAGGAGGAGGAGG+AGG 0.315599 4:+49456426 None:intergenic
TTGCCATTCTTTCGAGCTCT+TGG 0.330704 4:+49456344 None:intergenic
AAAGACGGCGGTGGAGGAGG+AGG 0.332308 4:+49456420 None:intergenic
TTTCAATGCTGTTATTGCTT+TGG 0.334453 4:-49455933 MsG0480020839.01.T01:CDS
GGTGAGAGTGTTTCTTTGGC+TGG 0.336538 4:-49456070 MsG0480020839.01.T01:CDS
GAGAGGTGAGAGTGTTTCTT+TGG 0.346695 4:-49456074 MsG0480020839.01.T01:CDS
GGTCGCTACACTACTTAATA+AGG 0.351100 4:-49454223 MsG0480020839.01.T01:CDS
AAACAAACAGCCCTTTATTT+GGG 0.355197 4:-49456712 MsG0480020839.01.T01:five_prime_UTR
TCGGATTCATGATCAGAAAA+TGG 0.356858 4:-49456257 MsG0480020839.01.T01:CDS
GACGGCGGTGGAGGAGGAGG+AGG 0.358795 4:+49456423 None:intergenic
CAACATGCCGGAGGAGGATT+GGG 0.362792 4:-49456221 MsG0480020839.01.T01:CDS
GGGAAGCGGAGAGGGCTTCT+TGG 0.365112 4:+49456467 None:intergenic
AAATCTTCTGATGGAGGGTT+AGG 0.366932 4:+49453607 None:intergenic
TGAAACTTGTGTCATTTGTT+TGG 0.367099 4:-49454055 MsG0480020839.01.T01:CDS
TTGTTCTTGGGTTGAGTCCA+TGG 0.371722 4:+49456585 None:intergenic
CTTCAGCAAGTTCAATCATA+TGG 0.382234 4:+49453530 None:intergenic
TGATGAGGATAATTTGATAT+TGG 0.382450 4:-49456026 MsG0480020839.01.T01:CDS
CGATGATGGTCCGGTTGTTA+GGG 0.383801 4:-49456131 MsG0480020839.01.T01:CDS
GAAATTTCTAAGGCTGTTGC+TGG 0.383989 4:-49456004 MsG0480020839.01.T01:CDS
GTCAAAGTCTTGTTGTTCTT+GGG 0.385156 4:+49456573 None:intergenic
AGACTTTGACTTCTTGTTAA+CGG 0.385702 4:-49456560 MsG0480020839.01.T01:CDS
TTCTTTCGAGCTCTTGGAGC+TGG 0.396147 4:+49456350 None:intergenic
CGGAGGAGGATTGGGATGAA+TGG 0.401481 4:-49456213 MsG0480020839.01.T01:CDS
GAGCTTATGGCTTTGATTGA+AGG 0.406533 4:-49455956 MsG0480020839.01.T01:CDS
AGTGTTTCTTTGGCTGGGAT+TGG 0.411786 4:-49456064 MsG0480020839.01.T01:CDS
TGGTCAGTTAAGTGGAAAAT+GGG 0.412108 4:-49454262 MsG0480020839.01.T01:intron
TCAACATGCCGGAGGAGGAT+TGG 0.418288 4:-49456222 MsG0480020839.01.T01:CDS
GGAGGAGGATTGGGATGAAT+GGG 0.426045 4:-49456212 MsG0480020839.01.T01:CDS
GGAGGAAGGTTGGTCGATGA+GGG 0.427531 4:+49456447 None:intergenic
GGAGGATTGGGATGAATGGG+GGG 0.429305 4:-49456209 MsG0480020839.01.T01:CDS
TTAAAATAAACCCTAACAAC+CGG 0.430421 4:+49456121 None:intergenic
TTAAGTAGTGTAGCGACCTT+CGG 0.437588 4:+49454228 None:intergenic
TCATGCCTCGCCACAAGCCT+TGG 0.442248 4:+49454165 None:intergenic
AGGAGGATTGGGATGAATGG+GGG 0.445270 4:-49456210 MsG0480020839.01.T01:CDS
GCTCCAAGAGCTCGAAAGAA+TGG 0.452831 4:-49456347 MsG0480020839.01.T01:CDS
AAGCTAAAGTCCCAAATAAA+GGG 0.453107 4:+49456702 None:intergenic
GACGAACTCCCTTCACCAAA+TGG 0.453109 4:+49456172 None:intergenic
GTGAGAGTGTTTCTTTGGCT+GGG 0.465990 4:-49456069 MsG0480020839.01.T01:CDS
GAGGAGGATTGGGATGAATG+GGG 0.467507 4:-49456211 MsG0480020839.01.T01:CDS
CTCAAAATTTCGTTGCTGCA+TGG 0.468528 4:+49453843 None:intergenic
AGGAGGAAGGTTGGTCGATG+AGG 0.472445 4:+49456446 None:intergenic
TTCGAGAAAGACGGCGGTGG+AGG 0.476156 4:+49456414 None:intergenic
GACATCAGTGCAGAGCATCT+TGG 0.485705 4:+49453781 None:intergenic
CTCCGGCATGTTGAAAATCT+CGG 0.490536 4:+49456231 None:intergenic
GAGAAAGACGGCGGTGGAGG+AGG 0.492225 4:+49456417 None:intergenic
AGTGCAGAGCATCTTGGATA+AGG 0.492748 4:+49453787 None:intergenic
TTGAGAAACCATTTGGTGAA+GGG 0.498121 4:-49456180 MsG0480020839.01.T01:CDS
TTTGGTGAAGGGAGTTCGTC+GGG 0.501386 4:-49456169 MsG0480020839.01.T01:CDS
TTCAACTTAAAATCTTCTGA+TGG 0.501863 4:+49453598 None:intergenic
GTCGATGAGGGAAGCGGAGA+GGG 0.503652 4:+49456459 None:intergenic
CAGGGAACAGTTACAGTCCA+TGG 0.505375 4:-49456602 MsG0480020839.01.T01:exon
ACTGTAACTGTTCCCTGTAA+AGG 0.511249 4:+49456608 None:intergenic
TGACATGTTATACCTACAAA+AGG 0.516724 4:-49453636 MsG0480020839.01.T01:CDS
TCGACGAGGCGGAACGATGA+TGG 0.516848 4:-49456145 MsG0480020839.01.T01:CDS
AACTTAAAATCTTCTGATGG+AGG 0.519846 4:+49453601 None:intergenic
AGTTGAAGTCTCTGGCATCA+AGG 0.520502 4:-49453582 MsG0480020839.01.T01:CDS
TGGCATCAAGGAGTCTTTGG+AGG 0.524698 4:-49453570 MsG0480020839.01.T01:CDS
GTTGAAAACGGAGTCGGAGA+TGG 0.525304 4:+49456384 None:intergenic
CATTCATCCCAATCCTCCTC+CGG 0.525580 4:+49456214 None:intergenic
ATTGTAAGCGAAATCGAGAT+CGG 0.531400 4:+49456498 None:intergenic
ACTTAAAATCTTCTGATGGA+GGG 0.531502 4:+49453602 None:intergenic
TTTGAGAAACCATTTGGTGA+AGG 0.531769 4:-49456181 MsG0480020839.01.T01:CDS
GAGGCGGAACGATGATGGTC+CGG 0.533783 4:-49456140 MsG0480020839.01.T01:CDS
GGCATGTTGGCACCATTCCA+TGG 0.534169 4:+49453938 None:intergenic
CATCCCTCATGAGGGCATGT+TGG 0.535618 4:+49453925 None:intergenic
TAAGGGTTTAGTGAGTGAGG+AGG 0.536413 4:-49456101 MsG0480020839.01.T01:CDS
AAAACGGAGTCGGAGATGGA+TGG 0.537187 4:+49456388 None:intergenic
CAGTTGATGGCTGTCAACAC+AGG 0.537949 4:-49454005 MsG0480020839.01.T01:CDS
ACTCACGGTGGCGGAATCCA+TGG 0.542089 4:-49456524 MsG0480020839.01.T01:CDS
GCTAGATTCAGCAGGCCTCA+TGG 0.542852 4:+49454095 None:intergenic
GGCGCAACGCCACGAACTCA+CGG 0.545514 4:-49456539 MsG0480020839.01.T01:CDS
TCATTCTTGCATCCCTCATG+AGG 0.546847 4:+49453916 None:intergenic
ATTCCGCCACCGTGAGTTCG+TGG 0.547693 4:+49456530 None:intergenic
ACGCCACGAACTCACGGTGG+CGG 0.555818 4:-49456533 MsG0480020839.01.T01:CDS
GAGAGAGTTAGCGTTGAAAA+CGG 0.559178 4:+49456372 None:intergenic
TGGCAATCGAGATGAACGAC+AGG 0.559294 4:-49456327 MsG0480020839.01.T01:CDS
ATTTGGTGAAGGGAGTTCGT+CGG 0.561209 4:-49456170 MsG0480020839.01.T01:CDS
AACTTGTGTCATTTGTTTGG+AGG 0.561454 4:-49454052 MsG0480020839.01.T01:CDS
TTTACACCGCTAGATTCAGC+AGG 0.565712 4:+49454087 None:intergenic
GTTTCGGCTGCAAGGTTCCG+TGG 0.568651 4:-49453669 MsG0480020839.01.T01:CDS
CTGTTGCTGGGAATGAAAGT+AGG 0.569002 4:-49455991 MsG0480020839.01.T01:CDS
GTTGCTACCACATGACATGC+AGG 0.571834 4:-49453507 MsG0480020839.01.T01:CDS
GTCTTCGAGAAAGACGGCGG+TGG 0.574602 4:+49456411 None:intergenic
AAGAAATGTGTAAAATGTCA+TGG 0.575908 4:-49453700 MsG0480020839.01.T01:CDS
AAACGGAGTCGGAGATGGAT+GGG 0.577431 4:+49456389 None:intergenic
TTACTGCAGTCCAAGGCTTG+TGG 0.578524 4:-49454175 MsG0480020839.01.T01:CDS
ATAACACTCACTCCTTTACA+GGG 0.582471 4:-49456620 MsG0480020839.01.T01:five_prime_UTR
TGTTGCTGTTTGTGATGATG+AGG 0.583207 4:-49456041 MsG0480020839.01.T01:CDS
AAATTTCTAAGGCTGTTGCT+GGG 0.584399 4:-49456003 MsG0480020839.01.T01:CDS
AATTTGCTTACTGCAGTCCA+AGG 0.585420 4:-49454182 MsG0480020839.01.T01:CDS
GAAATCGAGATCGGATTCCA+TGG 0.587184 4:+49456507 None:intergenic
GAGGATTGGGATGAATGGGG+GGG 0.591215 4:-49456208 MsG0480020839.01.T01:CDS
GTGAGTGAGGAGGTTGTGAG+AGG 0.594469 4:-49456091 MsG0480020839.01.T01:CDS
GGTGCCAACATGCCCTCATG+AGG 0.596754 4:-49453929 MsG0480020839.01.T01:CDS
GGATGGGTCTTCGAGAAAGA+CGG 0.604880 4:+49456405 None:intergenic
GGTGAAGTTGCTCCATGGAA+TGG 0.606666 4:-49453950 MsG0480020839.01.T01:CDS
CATTCTTGCATCCCTCATGA+GGG 0.608069 4:+49453917 None:intergenic
TGCAAGGTTCCGTGGCATAG+TGG 0.608373 4:-49453661 MsG0480020839.01.T01:CDS
AGGTTGGTCGATGAGGGAAG+CGG 0.613007 4:+49456453 None:intergenic
GTGGAGGTGAAGTTGCTCCA+TGG 0.619820 4:-49453955 MsG0480020839.01.T01:CDS
GGTCGATGAGGGAAGCGGAG+AGG 0.626159 4:+49456458 None:intergenic
GCAGTCCAAGGCTTGTGGCG+AGG 0.628647 4:-49454170 MsG0480020839.01.T01:CDS
GGTATTGCTTGTCTTGCATG+AGG 0.631054 4:-49453984 MsG0480020839.01.T01:CDS
CATATGATTGAACTTGCTGA+AGG 0.640994 4:-49453529 MsG0480020839.01.T01:CDS
GTTCGTCGGGTTCGACGAGG+CGG 0.642263 4:-49456156 MsG0480020839.01.T01:CDS
GTTAGCGTTGAAAACGGAGT+CGG 0.649356 4:+49456378 None:intergenic
GTCTTGCATGAGGCAACATG+TGG 0.659146 4:-49453974 MsG0480020839.01.T01:CDS
TAGAGTACCTGCATGTCATG+TGG 0.660971 4:+49453500 None:intergenic
TGAAAGTAGGAAAATTGCTG+TGG 0.668978 4:-49455978 MsG0480020839.01.T01:CDS
TTGCATGAGGCAACATGTGG+AGG 0.673807 4:-49453971 MsG0480020839.01.T01:CDS
AGAAGGACGATCTCAACCGT+CGG 0.683370 4:-49456276 MsG0480020839.01.T01:CDS
ATGAGGCCTGCTGAATCTAG+CGG 0.684150 4:-49454093 MsG0480020839.01.T01:CDS
CATGTCATACCACTATGCCA+CGG 0.686231 4:+49453652 None:intergenic
GGAGTTCGTCGGGTTCGACG+AGG 0.688183 4:-49456159 MsG0480020839.01.T01:CDS
ATGGGCTTCGAAACAGCCGA+AGG 0.691008 4:-49454244 MsG0480020839.01.T01:CDS
CAATTGTTTCTCAATCCATG+AGG 0.697517 4:-49454110 MsG0480020839.01.T01:CDS
GTGCCAACATGCCCTCATGA+GGG 0.700338 4:-49453928 MsG0480020839.01.T01:CDS
TGGGTCTTCGAGAAAGACGG+CGG 0.730901 4:+49456408 None:intergenic
GCAACGCCACGAACTCACGG+TGG 0.773826 4:-49456536 MsG0480020839.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTATAAAATCCAATT+TGG - Chr4:49453548-49453567 MsG0480020839.01.T01:CDS 15.0%
!! ATAAATGATAACATTATAGA+GGG - Chr4:49454876-49454895 MsG0480020839.01.T01:intron 15.0%
!! GTGCAAAATAAAATAAAAAA+TGG - Chr4:49454536-49454555 MsG0480020839.01.T01:intron 15.0%
!! TATAAATGATAACATTATAG+AGG - Chr4:49454875-49454894 MsG0480020839.01.T01:intron 15.0%
!!! TTATGTCCATTTTATTTTTT+AGG - Chr4:49455669-49455688 MsG0480020839.01.T01:intron 15.0%
!!! TTCATAATTTATTTTCATGT+TGG + Chr4:49454800-49454819 None:intergenic 15.0%
!!! TTTTTAACATCTTGTTTTAT+TGG - Chr4:49455927-49455946 MsG0480020839.01.T01:CDS 15.0%
!! AACAGTCCTAAAAAATAAAA+TGG + Chr4:49455678-49455697 None:intergenic 20.0%
!! AATAAGAAGAATAGATAAGA+TGG - Chr4:49454986-49455005 MsG0480020839.01.T01:intron 20.0%
!! GACAAAAAAAAAAAAGTGAT+TGG - Chr4:49455419-49455438 MsG0480020839.01.T01:intron 20.0%
!! TAATGACCATACATATATTA+TGG + Chr4:49455273-49455292 None:intergenic 20.0%
!! TATGAACCATAATATATGTA+TGG - Chr4:49455264-49455283 MsG0480020839.01.T01:intron 20.0%
!! TATTGAATTGGATAGAAATA+TGG - Chr4:49455081-49455100 MsG0480020839.01.T01:intron 20.0%
!! TCAAAATGACAAAAGATAAT+TGG - Chr4:49455380-49455399 MsG0480020839.01.T01:intron 20.0%
!! TGAAACTTTATAATGCTTAT+TGG - Chr4:49455731-49455750 MsG0480020839.01.T01:intron 20.0%
!! TTTATCCTACAATTAAACTA+GGG + Chr4:49454430-49454449 None:intergenic 20.0%
!! TTTGATATTGGAAATTTCTA+AGG - Chr4:49454195-49454214 MsG0480020839.01.T01:CDS 20.0%
!!! TATATATAGCTTTTCCAAAT+TGG + Chr4:49453565-49453584 None:intergenic 20.0%
! AAGAAATGTGTAAAATGTCA+TGG - Chr4:49456509-49456528 MsG0480020839.01.T01:CDS 25.0%
! AATGACAAAAGATAATTGGA+TGG - Chr4:49455384-49455403 MsG0480020839.01.T01:intron 25.0%
! AATTATGAATAGTAGAGATG+AGG - Chr4:49454811-49454830 MsG0480020839.01.T01:intron 25.0%
! AGATCTAGAGATTATTGAAT+TGG - Chr4:49455069-49455088 MsG0480020839.01.T01:intron 25.0%
! ATAACGCTTATTGATAAGTT+AGG - Chr4:49455795-49455814 MsG0480020839.01.T01:intron 25.0%
! ATACATTGTTATGCTAAACT+TGG - Chr4:49454465-49454484 MsG0480020839.01.T01:intron 25.0%
! CTTTATCCTACAATTAAACT+AGG + Chr4:49454431-49454450 None:intergenic 25.0%
! GTTATATGGAACAAATTGTT+GGG - Chr4:49454764-49454783 MsG0480020839.01.T01:intron 25.0%
! TGATGAGGATAATTTGATAT+TGG - Chr4:49454183-49454202 MsG0480020839.01.T01:CDS 25.0%
! TGTTATATGGAACAAATTGT+TGG - Chr4:49454763-49454782 MsG0480020839.01.T01:intron 25.0%
! TTAAAATAAACCCTAACAAC+CGG + Chr4:49454091-49454110 None:intergenic 25.0%
! TTCAACTTAAAATCTTCTGA+TGG + Chr4:49456614-49456633 None:intergenic 25.0%
!! AAAGTACCATTCAAGTTAAA+GGG - Chr4:49454708-49454727 MsG0480020839.01.T01:intron 25.0%
!! AGTTAAAGGGTGAATTTTAT+TGG - Chr4:49454721-49454740 MsG0480020839.01.T01:intron 25.0%
!! ATGACATTTTACACATTTCT+TGG + Chr4:49456510-49456529 None:intergenic 25.0%
!! TGACATTTTACACATTTCTT+GGG + Chr4:49456509-49456528 None:intergenic 25.0%
!!! AGTCAATTTTTTTCAGTTGA+TGG - Chr4:49456191-49456210 MsG0480020839.01.T01:CDS 25.0%
!!! ATTTTGAAGTCAAGAATTTC+CGG + Chr4:49456337-49456356 None:intergenic 25.0%
!!! GATAATGTTGTCTTTTTTTG+TGG - Chr4:49455901-49455920 MsG0480020839.01.T01:CDS 25.0%
!!! GTTGTTAGGGTTTATTTTAA+GGG - Chr4:49454091-49454110 MsG0480020839.01.T01:CDS 25.0%
!!! TATTTTATTTTGCACACACA+AGG + Chr4:49454531-49454550 None:intergenic 25.0%
!!! TTGAAGCGTGTTATTTATTT+TGG - Chr4:49454301-49454320 MsG0480020839.01.T01:intron 25.0%
AAAACAAACAGCCCTTTATT+TGG - Chr4:49453496-49453515 MsG0480020839.01.T01:CDS 30.0%
AAAGCTAAAGTCCCAAATAA+AGG + Chr4:49453511-49453530 None:intergenic 30.0%
AACTTAAAATCTTCTGATGG+AGG + Chr4:49456611-49456630 None:intergenic 30.0%
AAGCTAAAGTCCCAAATAAA+GGG + Chr4:49453510-49453529 None:intergenic 30.0%
ACTTAAAATCTTCTGATGGA+GGG + Chr4:49456610-49456629 None:intergenic 30.0%
TAAACCATTGAATTCAAGCT+GGG - Chr4:49454642-49454661 MsG0480020839.01.T01:intron 30.0%
TGACATGTTATACCTACAAA+AGG - Chr4:49456573-49456592 MsG0480020839.01.T01:CDS 30.0%
TGGTAAATGATAGAGCTTTA+TGG - Chr4:49455101-49455120 MsG0480020839.01.T01:intron 30.0%
TTCCATATTATAGCAGTTAC+CGG + Chr4:49455621-49455640 None:intergenic 30.0%
TTTCAATGCTGTTATTGCTT+TGG - Chr4:49454276-49454295 MsG0480020839.01.T01:intron 30.0%
TTTGTTCCATATAACATCGT+CGG + Chr4:49454759-49454778 None:intergenic 30.0%
! AAACAAACAGCCCTTTATTT+GGG - Chr4:49453497-49453516 MsG0480020839.01.T01:CDS 30.0%
! AGACTTTGACTTCTTGTTAA+CGG - Chr4:49453649-49453668 MsG0480020839.01.T01:CDS 30.0%
! CAAAGTACCATTCAAGTTAA+AGG - Chr4:49454707-49454726 MsG0480020839.01.T01:intron 30.0%
! CAGTAAATTTTCTCAGTAAC+TGG + Chr4:49456401-49456420 None:intergenic 30.0%
!! AATTCACCCTTTAACTTGAA+TGG + Chr4:49454717-49454736 None:intergenic 30.0%
!! CTTTAACTTGAATGGTACTT+TGG + Chr4:49454709-49454728 None:intergenic 30.0%
!! GGTAATTTTGAGAAACCATT+TGG - Chr4:49454022-49454041 MsG0480020839.01.T01:CDS 30.0%
!! TGAAACTTGTGTCATTTGTT+TGG - Chr4:49456154-49456173 MsG0480020839.01.T01:CDS 30.0%
!! TGTTTTATTGGTCAGTTAAG+TGG - Chr4:49455939-49455958 MsG0480020839.01.T01:CDS 30.0%
!!! AATGTTGTCTTTTTTTGTGG+AGG - Chr4:49455904-49455923 MsG0480020839.01.T01:CDS 30.0%
!!! AGATTTTAAGTTGAAGTCTC+TGG - Chr4:49456619-49456638 MsG0480020839.01.T01:five_prime_UTR 30.0%
!!! GGACTGTTTTTGTTTTAATG+TGG - Chr4:49455690-49455709 MsG0480020839.01.T01:intron 30.0%
!!! GGTTGTTAGGGTTTATTTTA+AGG - Chr4:49454090-49454109 MsG0480020839.01.T01:CDS 30.0%
!!! TTGGGACTTTAGCTTTTTTT+AGG - Chr4:49453515-49453534 MsG0480020839.01.T01:CDS 30.0%
AAAAACAATGCGTGAAGAGA+AGG - Chr4:49453916-49453935 MsG0480020839.01.T01:CDS 35.0%
AAAGTACAATTCAAGCCAAG+TGG + Chr4:49455840-49455859 None:intergenic 35.0%
AACCGGTAACTGCTATAATA+TGG - Chr4:49455616-49455635 MsG0480020839.01.T01:intron 35.0%
ACCATGTACATAATTCGAAC+CGG - Chr4:49455599-49455618 MsG0480020839.01.T01:intron 35.0%
ACTTGGACATACATAATGAG+AGG - Chr4:49454482-49454501 MsG0480020839.01.T01:intron 35.0%
AGACTACTCCAAAAGTCTTA+TGG - Chr4:49456466-49456485 MsG0480020839.01.T01:CDS 35.0%
ATAACACTCACTCCTTTACA+GGG - Chr4:49453589-49453608 MsG0480020839.01.T01:CDS 35.0%
ATAAGTCGAGATTCAAACCA+TGG - Chr4:49455188-49455207 MsG0480020839.01.T01:intron 35.0%
ATGCACCCTAGTTTAATTGT+AGG - Chr4:49454422-49454441 MsG0480020839.01.T01:intron 35.0%
ATTGTAAGCGAAATCGAGAT+CGG + Chr4:49453714-49453733 None:intergenic 35.0%
CTTCAGCAAGTTCAATCATA+TGG + Chr4:49456682-49456701 None:intergenic 35.0%
GAGAATACTCAAATCACTAG+AGG - Chr4:49455008-49455027 MsG0480020839.01.T01:intron 35.0%
GATAACATTATAGAGGGAGT+TGG - Chr4:49454882-49454901 MsG0480020839.01.T01:intron 35.0%
GTAAACCATTGAATTCAAGC+TGG - Chr4:49454641-49454660 MsG0480020839.01.T01:intron 35.0%
TCGGATTCATGATCAGAAAA+TGG - Chr4:49453952-49453971 MsG0480020839.01.T01:CDS 35.0%
TGAAAGTAGGAAAATTGCTG+TGG - Chr4:49454231-49454250 MsG0480020839.01.T01:CDS 35.0%
TGGTCAGTTAAGTGGAAAAT+GGG - Chr4:49455947-49455966 MsG0480020839.01.T01:CDS 35.0%
TTGGTCAGTTAAGTGGAAAA+TGG - Chr4:49455946-49455965 MsG0480020839.01.T01:CDS 35.0%
! ACAGAGTGATTTGTGTTGAT+TGG - Chr4:49455521-49455540 MsG0480020839.01.T01:intron 35.0%
! ATGGAATGTGTTGTTGTGTT+TGG - Chr4:49454555-49454574 MsG0480020839.01.T01:intron 35.0%
! CAATTGTTTCTCAATCCATG+AGG - Chr4:49456099-49456118 MsG0480020839.01.T01:CDS 35.0%
! GACTACTCCAAAAGTCTTAT+GGG - Chr4:49456467-49456486 MsG0480020839.01.T01:CDS 35.0%
! GTTAGGATTCAACCTTTTGT+AGG + Chr4:49456588-49456607 None:intergenic 35.0%
! TACAGAACCCATAAGACTTT+TGG + Chr4:49456477-49456496 None:intergenic 35.0%
! TGATGCGTGTTTAAGATGAT+GGG - Chr4:49455863-49455882 MsG0480020839.01.T01:intron 35.0%
! TGGAATGTGTTGTTGTGTTT+GGG - Chr4:49454556-49454575 MsG0480020839.01.T01:intron 35.0%
! TGTCATGGTCTTTTCTGTTT+CGG - Chr4:49456524-49456543 MsG0480020839.01.T01:CDS 35.0%
! TTGAGAAACCATTTGGTGAA+GGG - Chr4:49454029-49454048 MsG0480020839.01.T01:CDS 35.0%
! TTGATGCGTGTTTAAGATGA+TGG - Chr4:49455862-49455881 MsG0480020839.01.T01:intron 35.0%
! TTTGAGAAACCATTTGGTGA+AGG - Chr4:49454028-49454047 MsG0480020839.01.T01:CDS 35.0%
! TTTTCTGATCATGAATCCGA+CGG + Chr4:49453952-49453971 None:intergenic 35.0%
!! AAATTTCTAAGGCTGTTGCT+GGG - Chr4:49454206-49454225 MsG0480020839.01.T01:CDS 35.0%
!! AACTTGTGTCATTTGTTTGG+AGG - Chr4:49456157-49456176 MsG0480020839.01.T01:CDS 35.0%
!! AGTCAAAGTCTTGTTGTTCT+TGG + Chr4:49453640-49453659 None:intergenic 35.0%
!! CATATGATTGAACTTGCTGA+AGG - Chr4:49456680-49456699 MsG0480020839.01.T01:five_prime_UTR 35.0%
!! GTCAAAGTCTTGTTGTTCTT+GGG + Chr4:49453639-49453658 None:intergenic 35.0%
!! TTATTTTGCACACACAAGGA+GGG + Chr4:49454527-49454546 None:intergenic 35.0%
!! TTTTAAGGGTTTAGTGAGTG+AGG - Chr4:49454105-49454124 MsG0480020839.01.T01:CDS 35.0%
!!! TTTATTTTGCACACACAAGG+AGG + Chr4:49454528-49454547 None:intergenic 35.0%
AAATCTTCTGATGGAGGGTT+AGG + Chr4:49456605-49456624 None:intergenic 40.0%
ACTCAAATCACTAGAGGCAA+GGG - Chr4:49455014-49455033 MsG0480020839.01.T01:intron 40.0%
ACTGTAACTGTTCCCTGTAA+AGG + Chr4:49453604-49453623 None:intergenic 40.0%
CATAACACTCACTCCTTTAC+AGG - Chr4:49453588-49453607 MsG0480020839.01.T01:CDS 40.0%
CTCAAAATTTCGTTGCTGCA+TGG + Chr4:49456369-49456388 None:intergenic 40.0%
GAAAATTGCTGTGGAGCTTA+TGG - Chr4:49454240-49454259 MsG0480020839.01.T01:CDS 40.0%
GAAAGTTCAGGTGTGAAAGT+TGG - Chr4:49455447-49455466 MsG0480020839.01.T01:intron 40.0%
GAAGATAGGCTTAGGTGATT+TGG - Chr4:49454933-49454952 MsG0480020839.01.T01:intron 40.0%
GGTCGCTACACTACTTAATA+AGG - Chr4:49455986-49456005 MsG0480020839.01.T01:CDS 40.0%
GTAAGACCGACGATGTTATA+TGG - Chr4:49454750-49454769 MsG0480020839.01.T01:intron 40.0%
TACTCAAATCACTAGAGGCA+AGG - Chr4:49455013-49455032 MsG0480020839.01.T01:intron 40.0%
TCGAGATTCAAACCATGGAT+TGG - Chr4:49455193-49455212 MsG0480020839.01.T01:intron 40.0%
TGTTGTGTTTGGGAGAAGAT+TGG - Chr4:49454566-49454585 MsG0480020839.01.T01:intron 40.0%
TTAAGTAGTGTAGCGACCTT+CGG + Chr4:49455984-49456003 None:intergenic 40.0%
! AACTTCTAGTTGACAGTTGC+CGG - Chr4:49456315-49456334 MsG0480020839.01.T01:CDS 40.0%
! AAGTTAGGAGCATGTGTTCT+TGG - Chr4:49455810-49455829 MsG0480020839.01.T01:intron 40.0%
! AATTTGCTTACTGCAGTCCA+AGG - Chr4:49456027-49456046 MsG0480020839.01.T01:CDS 40.0%
! ACCTATAGTGGAAAAGATGG+TGG - Chr4:49454911-49454930 MsG0480020839.01.T01:intron 40.0%
! AGCACCTATAGTGGAAAAGA+TGG - Chr4:49454908-49454927 MsG0480020839.01.T01:intron 40.0%
! CATGCAGCAACGAAATTTTG+AGG - Chr4:49456367-49456386 MsG0480020839.01.T01:CDS 40.0%
! CTTATCCCACTAAGTTGGAT+CGG + Chr4:49455146-49455165 None:intergenic 40.0%
! GAGAGAGTTAGCGTTGAAAA+CGG + Chr4:49453840-49453859 None:intergenic 40.0%
! TATTTTGCACACACAAGGAG+GGG + Chr4:49454526-49454545 None:intergenic 40.0%
! TCCACCATCTTTTCCACTAT+AGG + Chr4:49454915-49454934 None:intergenic 40.0%
! TGATTGGCTACAGAAAGTTC+AGG - Chr4:49455435-49455454 MsG0480020839.01.T01:intron 40.0%
!! ACCGGTTCGAATTATGTACA+TGG + Chr4:49455603-49455622 None:intergenic 40.0%
!! AGATTCAAACCATGGATTGG+AGG - Chr4:49455196-49455215 MsG0480020839.01.T01:intron 40.0%
!! GAAATTTCTAAGGCTGTTGC+TGG - Chr4:49454205-49454224 MsG0480020839.01.T01:CDS 40.0%
!! GAGCTTATGGCTTTGATTGA+AGG - Chr4:49454253-49454272 MsG0480020839.01.T01:CDS 40.0%
!! TGGAAAAGATGGTGGAAGAT+AGG - Chr4:49454919-49454938 MsG0480020839.01.T01:intron 40.0%
!! TGTTGCTGTTTGTGATGATG+AGG - Chr4:49454168-49454187 MsG0480020839.01.T01:CDS 40.0%
AATACACGTCCTCCAATCCA+TGG + Chr4:49455208-49455227 None:intergenic 45.0%
ACCACCCAGCTTGAATTCAA+TGG + Chr4:49454649-49454668 None:intergenic 45.0%
ACCATTGAATTCAAGCTGGG+TGG - Chr4:49454645-49454664 MsG0480020839.01.T01:intron 45.0%
AGTGTTTCTTTGGCTGGGAT+TGG - Chr4:49454145-49454164 MsG0480020839.01.T01:CDS 45.0%
AGTTGAAGTCTCTGGCATCA+AGG - Chr4:49456627-49456646 MsG0480020839.01.T01:five_prime_UTR 45.0%
AGTTGGAGTAGCACCTATAG+TGG - Chr4:49454899-49454918 MsG0480020839.01.T01:intron 45.0%
ATGAGTAGTGAGACTGGAAG+AGG - Chr4:49454846-49454865 MsG0480020839.01.T01:intron 45.0%
ATGTAGCCGATCCAACTTAG+TGG - Chr4:49455137-49455156 MsG0480020839.01.T01:intron 45.0%
CAACTTAGTGGGATAAGGCT+TGG - Chr4:49455149-49455168 MsG0480020839.01.T01:intron 45.0%
CATGTCATACCACTATGCCA+CGG + Chr4:49456560-49456579 None:intergenic 45.0%
CATTCTTGCATCCCTCATGA+GGG + Chr4:49456295-49456314 None:intergenic 45.0%
CGATCCAACTTAGTGGGATA+AGG - Chr4:49455144-49455163 MsG0480020839.01.T01:intron 45.0%
CTCCGGCATGTTGAAAATCT+CGG + Chr4:49453981-49454000 None:intergenic 45.0%
CTGTTGCTGGGAATGAAAGT+AGG - Chr4:49454218-49454237 MsG0480020839.01.T01:CDS 45.0%
GAAATCGAGATCGGATTCCA+TGG + Chr4:49453705-49453724 None:intergenic 45.0%
GGTATTGCTTGTCTTGCATG+AGG - Chr4:49456225-49456244 MsG0480020839.01.T01:CDS 45.0%
TAAGGGTTTAGTGAGTGAGG+AGG - Chr4:49454108-49454127 MsG0480020839.01.T01:CDS 45.0%
TCATTCTTGCATCCCTCATG+AGG + Chr4:49456296-49456315 None:intergenic 45.0%
TGGGTGGTTGAAATGGAAGA+GGG - Chr4:49454661-49454680 MsG0480020839.01.T01:intron 45.0%
TGTAGCCGATCCAACTTAGT+GGG - Chr4:49455138-49455157 MsG0480020839.01.T01:intron 45.0%
TGTGTTCTTGGAATGCCACT+TGG - Chr4:49455822-49455841 MsG0480020839.01.T01:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - Chr4:49454654-49454673 MsG0480020839.01.T01:intron 45.0%
TTGCCATTCTTTCGAGCTCT+TGG + Chr4:49453868-49453887 None:intergenic 45.0%
TTTACACCGCTAGATTCAGC+AGG + Chr4:49456125-49456144 None:intergenic 45.0%
! ACTAAGTTGGATCGGCTACA+TGG + Chr4:49455138-49455157 None:intergenic 45.0%
! AGTGCAGAGCATCTTGGATA+AGG + Chr4:49456425-49456444 None:intergenic 45.0%
! ATTTGGTGAAGGGAGTTCGT+CGG - Chr4:49454039-49454058 MsG0480020839.01.T01:CDS 45.0%
! ATTTTGCACACACAAGGAGG+GGG + Chr4:49454525-49454544 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+TGG + Chr4:49455151-49455170 None:intergenic 45.0%
! GTCCGAGATTTTCAACATGC+CGG - Chr4:49453976-49453995 MsG0480020839.01.T01:CDS 45.0%
! GTTAGCGTTGAAAACGGAGT+CGG + Chr4:49453834-49453853 None:intergenic 45.0%
! TAGAGTACCTGCATGTCATG+TGG + Chr4:49456712-49456731 None:intergenic 45.0%
! TCTTTTCTGTTTCGGCTGCA+AGG - Chr4:49456532-49456551 MsG0480020839.01.T01:CDS 45.0%
!! AGATGGTGGAAGATAGGCTT+AGG - Chr4:49454925-49454944 MsG0480020839.01.T01:intron 45.0%
!! GAGAGGTGAGAGTGTTTCTT+TGG - Chr4:49454135-49454154 MsG0480020839.01.T01:CDS 45.0%
!! GTGAGAGTGTTTCTTTGGCT+GGG - Chr4:49454140-49454159 MsG0480020839.01.T01:CDS 45.0%
!! TTGTTCTTGGGTTGAGTCCA+TGG + Chr4:49453627-49453646 None:intergenic 45.0%
AAAACGGAGTCGGAGATGGA+TGG + Chr4:49453824-49453843 None:intergenic 50.0%
AAACGGAGTCGGAGATGGAT+GGG + Chr4:49453823-49453842 None:intergenic 50.0%
AGAAGGACGATCTCAACCGT+CGG - Chr4:49453933-49453952 MsG0480020839.01.T01:CDS 50.0%
AGGAGGATTGGGATGAATGG+GGG - Chr4:49453999-49454018 MsG0480020839.01.T01:CDS 50.0%
ATGAGGCCTGCTGAATCTAG+CGG - Chr4:49456116-49456135 MsG0480020839.01.T01:CDS 50.0%
CAGGGAACAGTTACAGTCCA+TGG - Chr4:49453607-49453626 MsG0480020839.01.T01:CDS 50.0%
CATTCATCCCAATCCTCCTC+CGG + Chr4:49453998-49454017 None:intergenic 50.0%
CTCTGGCATCAAGGAGTCTT+TGG - Chr4:49456636-49456655 MsG0480020839.01.T01:five_prime_UTR 50.0%
CTGGGTGGTTGAAATGGAAG+AGG - Chr4:49454660-49454679 MsG0480020839.01.T01:intron 50.0%
GACGAACTCCCTTCACCAAA+TGG + Chr4:49454040-49454059 None:intergenic 50.0%
GAGGAGGATTGGGATGAATG+GGG - Chr4:49453998-49454017 MsG0480020839.01.T01:CDS 50.0%
GCTCCAAGAGCTCGAAAGAA+TGG - Chr4:49453862-49453881 MsG0480020839.01.T01:CDS 50.0%
GGAGGAGGATTGGGATGAAT+GGG - Chr4:49453997-49454016 MsG0480020839.01.T01:CDS 50.0%
GGATGGGTCTTCGAGAAAGA+CGG + Chr4:49453807-49453826 None:intergenic 50.0%
GGTGAAGTTGCTCCATGGAA+TGG - Chr4:49456259-49456278 MsG0480020839.01.T01:CDS 50.0%
GTCTTGCATGAGGCAACATG+TGG - Chr4:49456235-49456254 MsG0480020839.01.T01:CDS 50.0%
GTTGAAAACGGAGTCGGAGA+TGG + Chr4:49453828-49453847 None:intergenic 50.0%
GTTGCTACCACATGACATGC+AGG - Chr4:49456702-49456721 MsG0480020839.01.T01:five_prime_UTR 50.0%
TAGAGATGAGGATGTTGCGC+TGG - Chr4:49454823-49454842 MsG0480020839.01.T01:intron 50.0%
TGGCAATCGAGATGAACGAC+AGG - Chr4:49453882-49453901 MsG0480020839.01.T01:CDS 50.0%
TGGCATCAAGGAGTCTTTGG+AGG - Chr4:49456639-49456658 MsG0480020839.01.T01:five_prime_UTR 50.0%
TTACTGCAGTCCAAGGCTTG+TGG - Chr4:49456034-49456053 MsG0480020839.01.T01:CDS 50.0%
TTCTTTCGAGCTCTTGGAGC+TGG + Chr4:49453862-49453881 None:intergenic 50.0%
TTGCATGAGGCAACATGTGG+AGG - Chr4:49456238-49456257 MsG0480020839.01.T01:CDS 50.0%
TTTGGTGAAGGGAGTTCGTC+GGG - Chr4:49454040-49454059 MsG0480020839.01.T01:CDS 50.0%
! ACGATGATGGTCCGGTTGTT+AGG - Chr4:49454077-49454096 MsG0480020839.01.T01:CDS 50.0%
! CGAGATTTTCAACATGCCGG+AGG - Chr4:49453979-49453998 MsG0480020839.01.T01:CDS 50.0%
! CGATGATGGTCCGGTTGTTA+GGG - Chr4:49454078-49454097 MsG0480020839.01.T01:CDS 50.0%
! GACATCAGTGCAGAGCATCT+TGG + Chr4:49456431-49456450 None:intergenic 50.0%
! GATTTTCAACATGCCGGAGG+AGG - Chr4:49453982-49454001 MsG0480020839.01.T01:CDS 50.0%
!! CAGTTGATGGCTGTCAACAC+AGG - Chr4:49456204-49456223 MsG0480020839.01.T01:CDS 50.0%
!! GGTGAGAGTGTTTCTTTGGC+TGG - Chr4:49454139-49454158 MsG0480020839.01.T01:CDS 50.0%
ATGGGCTTCGAAACAGCCGA+AGG - Chr4:49455965-49455984 MsG0480020839.01.T01:CDS 55.0%
CAACATGCCGGAGGAGGATT+GGG - Chr4:49453988-49454007 MsG0480020839.01.T01:CDS 55.0%
CGCTGGATGAGTAGTGAGAC+TGG - Chr4:49454840-49454859 MsG0480020839.01.T01:intron 55.0%
CGGAGGAGGATTGGGATGAA+TGG - Chr4:49453996-49454015 MsG0480020839.01.T01:CDS 55.0%
GAGGATTGGGATGAATGGGG+GGG - Chr4:49454001-49454020 MsG0480020839.01.T01:CDS 55.0%
GCTAGATTCAGCAGGCCTCA+TGG + Chr4:49456117-49456136 None:intergenic 55.0%
GGAGGATTGGGATGAATGGG+GGG - Chr4:49454000-49454019 MsG0480020839.01.T01:CDS 55.0%
GGCATGTTGGCACCATTCCA+TGG + Chr4:49456274-49456293 None:intergenic 55.0%
GTGAGTGAGGAGGTTGTGAG+AGG - Chr4:49454118-49454137 MsG0480020839.01.T01:CDS 55.0%
GTGCCAACATGCCCTCATGA+GGG - Chr4:49456281-49456300 MsG0480020839.01.T01:CDS 55.0%
GTGGAGGTGAAGTTGCTCCA+TGG - Chr4:49456254-49456273 MsG0480020839.01.T01:CDS 55.0%
TCAACATGCCGGAGGAGGAT+TGG - Chr4:49453987-49454006 MsG0480020839.01.T01:CDS 55.0%
TGCAAGGTTCCGTGGCATAG+TGG - Chr4:49456548-49456567 MsG0480020839.01.T01:CDS 55.0%
TGGGTCTTCGAGAAAGACGG+CGG + Chr4:49453804-49453823 None:intergenic 55.0%
! AGGAGGAAGGTTGGTCGATG+AGG + Chr4:49453766-49453785 None:intergenic 55.0%
! AGGTTGGTCGATGAGGGAAG+CGG + Chr4:49453759-49453778 None:intergenic 55.0%
! CATCCCTCATGAGGGCATGT+TGG + Chr4:49456287-49456306 None:intergenic 55.0%
! GGAGGAAGGTTGGTCGATGA+GGG + Chr4:49453765-49453784 None:intergenic 55.0%
AGGAGGAGGAGGAGGAAGGT+TGG + Chr4:49453775-49453794 None:intergenic 60.0%
ATTCCGCCACCGTGAGTTCG+TGG + Chr4:49453682-49453701 None:intergenic 60.0%
GGTGCCAACATGCCCTCATG+AGG - Chr4:49456280-49456299 MsG0480020839.01.T01:CDS 60.0%
GTCGATGAGGGAAGCGGAGA+GGG + Chr4:49453753-49453772 None:intergenic 60.0%
GTCTTCGAGAAAGACGGCGG+TGG + Chr4:49453801-49453820 None:intergenic 60.0%
GTTTCGGCTGCAAGGTTCCG+TGG - Chr4:49456540-49456559 MsG0480020839.01.T01:CDS 60.0%
TCATGCCTCGCCACAAGCCT+TGG + Chr4:49456047-49456066 None:intergenic 60.0%
TCGACGAGGCGGAACGATGA+TGG - Chr4:49454064-49454083 MsG0480020839.01.T01:CDS 60.0%
TTCGAGAAAGACGGCGGTGG+AGG + Chr4:49453798-49453817 None:intergenic 60.0%
! GAGGCGGAACGATGATGGTC+CGG - Chr4:49454069-49454088 MsG0480020839.01.T01:CDS 60.0%
!! ACTCACGGTGGCGGAATCCA+TGG - Chr4:49453685-49453704 MsG0480020839.01.T01:CDS 60.0%
AAAGACGGCGGTGGAGGAGG+AGG + Chr4:49453792-49453811 None:intergenic 65.0%
ACGCCACGAACTCACGGTGG+CGG - Chr4:49453676-49453695 MsG0480020839.01.T01:CDS 65.0%
GAGAAAGACGGCGGTGGAGG+AGG + Chr4:49453795-49453814 None:intergenic 65.0%
GAGGAGGAGGAGGAGGAGGA+AGG + Chr4:49453779-49453798 None:intergenic 65.0%
GCAACGCCACGAACTCACGG+TGG - Chr4:49453673-49453692 MsG0480020839.01.T01:CDS 65.0%
GCAGTCCAAGGCTTGTGGCG+AGG - Chr4:49456039-49456058 MsG0480020839.01.T01:CDS 65.0%
GGAGTTCGTCGGGTTCGACG+AGG - Chr4:49454050-49454069 MsG0480020839.01.T01:CDS 65.0%
GGCGCAACGCCACGAACTCA+CGG - Chr4:49453670-49453689 MsG0480020839.01.T01:CDS 65.0%
GGGAAGCGGAGAGGGCTTCT+TGG + Chr4:49453745-49453764 None:intergenic 65.0%
GGTCGATGAGGGAAGCGGAG+AGG + Chr4:49453754-49453773 None:intergenic 65.0%
GTTCGTCGGGTTCGACGAGG+CGG - Chr4:49454053-49454072 MsG0480020839.01.T01:CDS 65.0%
!! AGGAGGGGGCACTCGAAGCA+CGG + Chr4:49454511-49454530 None:intergenic 65.0%
GGTGGAGGAGGAGGAGGAGG+AGG + Chr4:49453783-49453802 None:intergenic 70.0%
GACGGCGGTGGAGGAGGAGG+AGG + Chr4:49453789-49453808 None:intergenic 75.0%
GGCGGTGGAGGAGGAGGAGG+AGG + Chr4:49453786-49453805 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 49453480 49456751 49453480 ID=MsG0480020839.01;Name=MsG0480020839.01
Chr4 mRNA 49453480 49456751 49453480 ID=MsG0480020839.01.T01;Parent=MsG0480020839.01;Name=MsG0480020839.01.T01;_AED=0.49;_eAED=0.50;_QI=146|1|0.5|1|1|1|2|0|506
Chr4 exon 49453480 49454277 49453480 ID=MsG0480020839.01.T01:exon:795;Parent=MsG0480020839.01.T01
Chr4 exon 49455883 49456751 49455883 ID=MsG0480020839.01.T01:exon:794;Parent=MsG0480020839.01.T01
Chr4 five_prime_UTR 49456606 49456751 49456606 ID=MsG0480020839.01.T01:five_prime_utr;Parent=MsG0480020839.01.T01
Chr4 CDS 49455883 49456605 49455883 ID=MsG0480020839.01.T01:cds;Parent=MsG0480020839.01.T01
Chr4 CDS 49453480 49454277 49453480 ID=MsG0480020839.01.T01:cds;Parent=MsG0480020839.01.T01
Gene Sequence

>MsG0480020839.01.T01

ATGGACTCAACCCAAGAACAACAAGACTTTGACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGTGGCGGAATCCATGGAATCCGATCTCGATTTCGCTTACAATCTTCAGCTCCAAGAAGCCCTCTCCGCTTCCCTCATCGACCAACCTTCCTCCTCCTCCTCCTCCTCCACCGCCGTCTTTCTCGAAGACCCATCCATCTCCGACTCCGTTTTCAACGCTAACTCTCTCCAGCTCCAAGAGCTCGAAAGAATGGCAATCGAGATGAACGACAGGATACAAAGCGAAAAAACAATGCGTGAAGAGAAGGACGATCTCAACCGTCGGATTCATGATCAGAAAATGGCGTCCGAGATTTTCAACATGCCGGAGGAGGATTGGGATGAATGGGGGGGTAATTTTGAGAAACCATTTGGTGAAGGGAGTTCGTCGGGTTCGACGAGGCGGAACGATGATGGTCCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAGGAGGTTGTGAGAGGTGAGAGTGTTTCTTTGGCTGGGATTGGTGTTGCTGTTTGTGATGATGAGGATAATTTGATATTGGAAATTTCTAAGGCTGTTGCTGGGAATGAAAGTAGGAAAATTGCTGTGGAGCTTATGGCTTTGATTGAAGGTTTCAATGCTGTTATTGCTTTGGATTTGAAGCGTGTTATTTATTTTGGTGATTATTATACACTTTTTCAACATTTAAGTGGAAAATGGGCTTCGAAACAGCCGAAGGTCGCTACACTACTTAATAAGGTGAATATGCTTCAAAGAAAATTTGCTTACTGCAGTCCAAGGCTTGTGGCGAGGCATGATCTGAAATTTGCATTTAAGCTTGCAAGAGATGCAATTGTTTCTCAATCCATGAGGCCTGCTGAATCTAGCGGTGTAAAGAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATAGTGATGTTAGTCAATTTTTTTCAGTTGATGGCTGTCAACACAGGTATTGCTTGTCTTGCATGAGGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAACATGCCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCAAAATTAGTTGAAACCATGCAGCAACGAAATTTTGAGGCATCAATTCCAGTTACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCACTGATGTCAAAAACTGAAGTTTTAGACTACTCCAAAAGTCTTATGGGTTCTGTACAATCAATGCCCAAGAAATGTGTAAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTTCCGTGGCATAGTGGTATGACATGTTATACCTACAAAAGGTTGAATCCTAACCCTCCATCAGAAGATTTTAAGTTGAAGTCTCTGGCATCAAGGAGTCTTTGGAGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACATGCAGGTACTCTAATAATTTTTCTTTGTATTAA

Protein sequence

>MsG0480020839.01.T01

MDSTQEQQDFDFLLTAQRHELTVAESMESDLDFAYNLQLQEALSASLIDQPSSSSSSSTAVFLEDPSISDSVFNANSLQLQELERMAIEMNDRIQSEKTMREEKDDLNRRIHDQKMASEIFNMPEEDWDEWGGNFEKPFGEGSSSGSTRRNDDGPVVRVYFKGLVSEEVVRGESVSLAGIGVAVCDDEDNLILEISKAVAGNESRKIAVELMALIEGFNAVIALDLKRVIYFGDYYTLFQHLSGKWASKQPKVATLLNKVNMLQRKFAYCSPRLVARHDLKFAFKLARDAIVSQSMRPAESSGVKSLNETCVICLEDSDVSQFFSVDGCQHRYCLSCMRQHVEVKLLHGMVPTCPHEGCKNELLVDSCRKFLTSKLVETMQQRNFEASIPVTEKIYCPYPRCSALMSKTEVLDYSKSLMGSVQSMPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPSEDFKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRYSNNFSLY*