AlfalfaGEDB | MsG0480020839.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020839.01

KEGG: -
GO: GO:0003676 GO:0046872
PFAM: PF00097 PF01485 PF13456

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020839.01.T01	XP_024636087.1	93.042	503	31	1	1	503	1	499	0	971

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020839.01.T01	F4ITM1	36.932	352	201	5	155	503	12	345	5.97E-71	234

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020839.01.T01	A0A396I5F0	93.042	503	31	1	1	503	1	499	0.0	971

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0480020839.01	0.802531	5.368818e-49	2.636039e-46
MsG0080047869.01	MsG0480020839.01	0.828555	8.422458e-55	8.400370e-52
MsG0080047959.01	MsG0480020839.01	0.802210	6.250790e-49	3.044158e-46
MsG0080048462.01	MsG0480020839.01	0.804378	2.223437e-49	1.144649e-46
MsG0080048618.01	MsG0480020839.01	0.805830	1.104281e-49	5.901541e-47
MsG0080048764.01	MsG0480020839.01	0.811880	5.611011e-51	3.514008e-48
MsG0080048785.01	MsG0480020839.01	0.822658	2.105455e-53	1.773406e-50
MsG0080048856.01	MsG0480020839.01	0.818256	2.155308e-52	1.605147e-49
MsG0080048874.01	MsG0480020839.01	0.811167	8.014224e-51	4.925431e-48
MsG0080048964.01	MsG0480020839.01	0.802555	5.308172e-49	2.607842e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020839.01.T01	MTR_2g028870	30.056	356	225	11	157	503	66	406	8.14e-41	154
MsG0480020839.01.T01	MTR_2g044420	34.300	207	124	4	294	498	70	266	1.75e-32	125
MsG0480020839.01.T01	MTR_2g044440	33.508	191	115	4	311	499	96	276	3.56e-30	119
MsG0480020839.01.T01	MTR_2g044290	33.333	204	124	3	299	500	68	261	8.17e-30	117
MsG0480020839.01.T01	MTR_3g462590	31.863	204	126	4	303	503	89	282	1.65e-28	115
MsG0480020839.01.T01	MTR_1g105460	33.898	177	107	4	329	503	121	289	7.27e-27	110
MsG0480020839.01.T01	MTR_5g062990	33.824	204	124	5	296	498	94	287	3.56e-26	108
MsG0480020839.01.T01	MTR_3g462570	33.673	196	118	4	311	503	46	232	5.34e-26	112
MsG0480020839.01.T01	MTR_3g462570	33.884	121	68	3	385	503	419	529	4.70e-12	68.9
MsG0480020839.01.T01	MTR_2g044250	31.527	203	121	5	311	505	69	261	6.62e-26	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020839.01.T01	AT5G60250	40.882	499	268	8	27	503	1	494	3.49e-126	383
MsG0480020839.01.T01	AT2G25370	44.236	373	192	6	133	503	132	490	2.42e-94	299
MsG0480020839.01.T01	AT3G45580	40.346	347	192	4	158	503	29	361	1.03e-88	278
MsG0480020839.01.T01	AT2G25370	43.164	373	169	7	133	503	102	433	1.13e-85	275
MsG0480020839.01.T01	AT3G43750	39.718	355	193	6	154	505	10	346	7.66e-81	256
MsG0480020839.01.T01	AT5G37560	40.220	363	200	5	142	503	21	367	3.49e-80	257
MsG0480020839.01.T01	AT2G25360	45.051	293	144	5	212	503	1	277	2.36e-76	245
MsG0480020839.01.T01	AT2G21420	38.360	378	200	8	133	503	21	372	1.13e-74	243
MsG0480020839.01.T01	AT2G26130	36.932	352	201	5	155	503	12	345	6.09e-72	234
MsG0480020839.01.T01	AT3G45570	38.387	310	170	7	159	463	18	311	1.57e-65	214

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Find 134 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACAGCCCTTTATT+TGG	0.147814	4:-49456713	MsG0480020839.01.T01:five_prime_UTR
AAAACGGAGTCGGAGATGGA+TGG	0.537187	4:+49456388	None:intergenic
AAACAAACAGCCCTTTATTT+GGG	0.355197	4:-49456712	MsG0480020839.01.T01:five_prime_UTR
AAACGGAGTCGGAGATGGAT+GGG	0.577431	4:+49456389	None:intergenic
AAAGACGGCGGTGGAGGAGG+AGG	0.332308	4:+49456420	None:intergenic
AAAGCTAAAGTCCCAAATAA+AGG	0.303294	4:+49456701	None:intergenic
AAATCTTCTGATGGAGGGTT+AGG	0.366932	4:+49453607	None:intergenic
AAATTTCTAAGGCTGTTGCT+GGG	0.584399	4:-49456003	MsG0480020839.01.T01:CDS
AACTTAAAATCTTCTGATGG+AGG	0.519846	4:+49453601	None:intergenic
AACTTCTAGTTGACAGTTGC+CGG	0.294527	4:-49453894	MsG0480020839.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAACAGCCCTTTATT+TGG	-	Chr4:49453496-49453515	MsG0480020839.01.T01:CDS	30.0%
AAAGCTAAAGTCCCAAATAA+AGG	+	Chr4:49453511-49453530	None:intergenic	30.0%
AACTTAAAATCTTCTGATGG+AGG	+	Chr4:49456611-49456630	None:intergenic	30.0%
AAGCTAAAGTCCCAAATAAA+GGG	+	Chr4:49453510-49453529	None:intergenic	30.0%
ACTTAAAATCTTCTGATGGA+GGG	+	Chr4:49456610-49456629	None:intergenic	30.0%
TAAACCATTGAATTCAAGCT+GGG	-	Chr4:49454642-49454661	MsG0480020839.01.T01:intron	30.0%
TGACATGTTATACCTACAAA+AGG	-	Chr4:49456573-49456592	MsG0480020839.01.T01:CDS	30.0%
TGGTAAATGATAGAGCTTTA+TGG	-	Chr4:49455101-49455120	MsG0480020839.01.T01:intron	30.0%
TTCCATATTATAGCAGTTAC+CGG	+	Chr4:49455621-49455640	None:intergenic	30.0%
TTTCAATGCTGTTATTGCTT+TGG	-	Chr4:49454276-49454295	MsG0480020839.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	49453480	49456751	49453480	ID=MsG0480020839.01;Name=MsG0480020839.01
Chr4	mRNA	49453480	49456751	49453480	ID=MsG0480020839.01.T01;Parent=MsG0480020839.01;Name=MsG0480020839.01.T01;_AED=0.49;_eAED=0.50;_QI=146\|1\|0.5\|1\|1\|1\|2\|0\|506
Chr4	exon	49453480	49454277	49453480	ID=MsG0480020839.01.T01:exon:795;Parent=MsG0480020839.01.T01
Chr4	exon	49455883	49456751	49455883	ID=MsG0480020839.01.T01:exon:794;Parent=MsG0480020839.01.T01
Chr4	five_prime_UTR	49456606	49456751	49456606	ID=MsG0480020839.01.T01:five_prime_utr;Parent=MsG0480020839.01.T01
Chr4	CDS	49455883	49456605	49455883	ID=MsG0480020839.01.T01:cds;Parent=MsG0480020839.01.T01
Chr4	CDS	49453480	49454277	49453480	ID=MsG0480020839.01.T01:cds;Parent=MsG0480020839.01.T01

Gene Sequence

>MsG0480020839.01.T01

ATGGACTCAACCCAAGAACAACAAGACTTTGACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGTGGCGGAATCCATGGAATCCGATCTCGATTTCGCTTACAATCTTCAGCTCCAAGAAGCCCTCTCCGCTTCCCTCATCGACCAACCTTCCTCCTCCTCCTCCTCCTCCACCGCCGTCTTTCTCGAAGACCCATCCATCTCCGACTCCGTTTTCAACGCTAACTCTCTCCAGCTCCAAGAGCTCGAAAGAATGGCAATCGAGATGAACGACAGGATACAAAGCGAAAAAACAATGCGTGAAGAGAAGGACGATCTCAACCGTCGGATTCATGATCAGAAAATGGCGTCCGAGATTTTCAACATGCCGGAGGAGGATTGGGATGAATGGGGGGGTAATTTTGAGAAACCATTTGGTGAAGGGAGTTCGTCGGGTTCGACGAGGCGGAACGATGATGGTCCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAGGAGGTTGTGAGAGGTGAGAGTGTTTCTTTGGCTGGGATTGGTGTTGCTGTTTGTGATGATGAGGATAATTTGATATTGGAAATTTCTAAGGCTGTTGCTGGGAATGAAAGTAGGAAAATTGCTGTGGAGCTTATGGCTTTGATTGAAGGTTTCAATGCTGTTATTGCTTTGGATTTGAAGCGTGTTATTTATTTTGGTGATTATTATACACTTTTTCAACATTTAAGTGGAAAATGGGCTTCGAAACAGCCGAAGGTCGCTACACTACTTAATAAGGTGAATATGCTTCAAAGAAAATTTGCTTACTGCAGTCCAAGGCTTGTGGCGAGGCATGATCTGAAATTTGCATTTAAGCTTGCAAGAGATGCAATTGTTTCTCAATCCATGAGGCCTGCTGAATCTAGCGGTGTAAAGAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATAGTGATGTTAGTCAATTTTTTTCAGTTGATGGCTGTCAACACAGGTATTGCTTGTCTTGCATGAGGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAACATGCCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCAAAATTAGTTGAAACCATGCAGCAACGAAATTTTGAGGCATCAATTCCAGTTACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCACTGATGTCAAAAACTGAAGTTTTAGACTACTCCAAAAGTCTTATGGGTTCTGTACAATCAATGCCCAAGAAATGTGTAAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTTCCGTGGCATAGTGGTATGACATGTTATACCTACAAAAGGTTGAATCCTAACCCTCCATCAGAAGATTTTAAGTTGAAGTCTCTGGCATCAAGGAGTCTTTGGAGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACATGCAGGTACTCTAATAATTTTTCTTTGTATTAA

Protein sequence

>MsG0480020839.01.T01

MDSTQEQQDFDFLLTAQRHELTVAESMESDLDFAYNLQLQEALSASLIDQPSSSSSSSTAVFLEDPSISDSVFNANSLQLQELERMAIEMNDRIQSEKTMREEKDDLNRRIHDQKMASEIFNMPEEDWDEWGGNFEKPFGEGSSSGSTRRNDDGPVVRVYFKGLVSEEVVRGESVSLAGIGVAVCDDEDNLILEISKAVAGNESRKIAVELMALIEGFNAVIALDLKRVIYFGDYYTLFQHLSGKWASKQPKVATLLNKVNMLQRKFAYCSPRLVARHDLKFAFKLARDAIVSQSMRPAESSGVKSLNETCVICLEDSDVSQFFSVDGCQHRYCLSCMRQHVEVKLLHGMVPTCPHEGCKNELLVDSCRKFLTSKLVETMQQRNFEASIPVTEKIYCPYPRCSALMSKTEVLDYSKSLMGSVQSMPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPSEDFKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRYSNNFSLY*