AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038922.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038922.01.T01 MTR_7g065260 95.111 225 11 0 1 225 8 232 5.86e-148 411
MsG0780038922.01.T01 MTR_7g065590 78.222 225 48 1 1 225 1 224 4.01e-124 351
MsG0780038922.01.T01 MTR_7g065600 76.000 225 53 1 1 225 1 224 1.96e-121 344
MsG0780038922.01.T01 MTR_7g065230 78.222 225 43 2 1 225 1 219 6.83e-121 342
MsG0780038922.01.T01 MTR_7g065290 75.556 225 54 1 1 225 1 224 6.60e-120 340
MsG0780038922.01.T01 MTR_7g065270 73.778 225 58 1 1 225 1 224 2.66e-115 328
MsG0780038922.01.T01 MTR_7g065265 74.222 225 57 1 1 225 1 224 9.59e-115 327
MsG0780038922.01.T01 MTR_7g065720 65.929 226 75 2 1 225 1 225 3.12e-105 303
MsG0780038922.01.T01 MTR_7g065660 66.372 226 74 2 1 225 1 225 4.89e-105 302
MsG0780038922.01.T01 MTR_7g065750 62.389 226 84 1 1 225 1 226 6.41e-99 287
MsG0780038922.01.T01 MTR_4g019790 60.714 224 87 1 1 224 1 223 3.94e-98 285
MsG0780038922.01.T01 MTR_7g065630 63.393 224 77 2 1 224 19 237 4.97e-96 280
MsG0780038922.01.T01 MTR_7g065740 58.667 225 91 2 1 224 1 224 1.80e-95 278
MsG0780038922.01.T01 MTR_7g065640 61.062 226 68 3 1 225 1 207 2.04e-91 267
MsG0780038922.01.T01 MTR_4g019780 59.174 218 87 2 3 219 4 220 6.27e-87 256
MsG0780038922.01.T01 MTR_7g065710 62.312 199 71 1 8 206 5 199 4.99e-84 249
MsG0780038922.01.T01 MTR_7g065680 61.435 223 81 2 1 223 1 218 6.03e-82 244
MsG0780038922.01.T01 MTR_7g065700 63.107 206 72 1 1 206 1 202 4.27e-79 237
MsG0780038922.01.T01 MTR_3g099757 48.869 221 110 3 5 224 3 221 5.55e-60 188
MsG0780038922.01.T01 MTR_6g080440 45.045 222 118 3 7 225 3 223 6.42e-58 183
MsG0780038922.01.T01 MTR_1g115195 45.045 222 111 3 7 221 3 220 1.42e-57 182
MsG0780038922.01.T01 MTR_1g090150 45.249 221 115 4 6 223 2 219 3.87e-57 181
MsG0780038922.01.T01 MTR_8g087425 44.651 215 117 2 4 217 2 215 1.19e-56 179
MsG0780038922.01.T01 MTR_8g087410 46.222 225 108 5 1 219 1 218 7.69e-56 177
MsG0780038922.01.T01 MTR_1g090070 44.144 222 118 4 7 224 9 228 2.52e-52 169
MsG0780038922.01.T01 MTR_5g040430 42.009 219 118 4 1 212 1 217 2.71e-51 166
MsG0780038922.01.T01 MTR_1g090090 43.868 212 112 5 7 214 3 211 2.26e-50 164
MsG0780038922.01.T01 MTR_5g037380 45.540 213 104 5 1 204 1 210 1.83e-49 161
MsG0780038922.01.T01 MTR_8g061950 42.986 221 115 6 5 216 3 221 7.11e-49 160
MsG0780038922.01.T01 MTR_1g090060 42.035 226 118 6 7 225 3 222 2.74e-48 158
MsG0780038922.01.T01 MTR_4g059730 41.935 217 115 6 6 216 3 214 1.18e-47 156
MsG0780038922.01.T01 MTR_1g090100 41.892 222 120 7 8 224 3 220 1.52e-47 156
MsG0780038922.01.T01 MTR_3g467420 45.026 191 100 4 16 204 18 205 3.96e-40 137
MsG0780038922.01.T01 MTR_2g070200 40.000 210 122 3 6 213 3 210 6.46e-40 137
MsG0780038922.01.T01 MTR_2g070130 39.320 206 110 6 6 204 3 200 4.68e-38 132
MsG0780038922.01.T01 MTR_4g124130 44.271 192 95 7 6 191 3 188 6.63e-38 131
MsG0780038922.01.T01 MTR_2g070150 38.725 204 114 5 6 204 3 200 8.93e-38 130
MsG0780038922.01.T01 MTR_3g467430 41.379 203 114 5 4 204 6 205 1.98e-37 130
MsG0780038922.01.T01 MTR_2g070120 39.683 189 107 5 6 191 3 187 3.15e-36 127
MsG0780038922.01.T01 MTR_8g056940 38.350 206 122 4 6 209 3 205 6.48e-36 126
MsG0780038922.01.T01 MTR_2g070140 39.153 189 104 5 21 204 2 184 2.03e-35 124
MsG0780038922.01.T01 MTR_2g070180 38.220 191 113 4 16 204 13 200 4.33e-35 124
MsG0780038922.01.T01 MTR_2g070210 39.901 203 115 5 6 204 3 202 1.78e-34 122
MsG0780038922.01.T01 MTR_2g070070 37.073 205 124 4 7 209 4 205 4.23e-33 119
MsG0780038922.01.T01 MTR_5g076900 38.860 193 111 5 15 204 14 202 1.00e-32 118
MsG0780038922.01.T01 MTR_2g070060 37.624 202 121 4 7 206 4 202 1.23e-32 118
MsG0780038922.01.T01 MTR_0186s0030 43.796 137 70 2 6 135 3 139 1.28e-29 107
MsG0780038922.01.T01 MTR_2g070110 35.678 199 106 5 16 204 13 199 1.40e-26 102
MsG0780038922.01.T01 MTR_2g072120 48.276 58 29 1 51 107 2 59 2.23e-13 63.5
MsG0780038922.01.T01 MTR_4g134370 29.204 226 130 9 1 204 1 218 5.56e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038922.01.T01 AT2G29420 50.000 220 107 3 3 221 5 222 1.45e-67 207
MsG0780038922.01.T01 AT3G09270 47.556 225 113 5 3 224 2 224 1.99e-64 199
MsG0780038922.01.T01 AT2G29490 49.038 208 103 3 1 206 1 207 2.85e-56 179
MsG0780038922.01.T01 AT2G29480 47.596 208 106 3 1 206 1 207 4.02e-55 176
MsG0780038922.01.T01 AT2G29460 46.226 212 111 3 1 210 1 211 5.51e-55 175
MsG0780038922.01.T01 AT2G29450 45.946 222 114 3 3 218 2 223 5.57e-55 175
MsG0780038922.01.T01 AT2G29470 46.411 209 108 4 1 206 1 208 5.95e-52 167
MsG0780038922.01.T01 AT1G69930 41.818 220 121 3 2 215 7 225 5.57e-51 166
MsG0780038922.01.T01 AT1G10370 43.868 212 108 5 1 204 1 209 4.06e-49 160
MsG0780038922.01.T01 AT1G59700 45.887 231 111 8 5 223 4 232 9.11e-49 160
MsG0780038922.01.T01 AT2G29440 45.192 208 110 4 1 206 1 206 1.20e-48 159
MsG0780038922.01.T01 AT1G59670 44.498 209 106 5 5 204 4 211 2.67e-47 156
MsG0780038922.01.T01 AT5G62480 42.009 219 113 5 10 215 11 228 1.02e-44 150
MsG0780038922.01.T01 AT1G10360 38.073 218 125 5 6 215 4 219 2.22e-44 148
MsG0780038922.01.T01 AT1G69920 38.991 218 123 5 1 208 26 243 3.06e-44 149
MsG0780038922.01.T01 AT1G27130 37.778 225 130 5 1 217 1 223 8.47e-44 147
MsG0780038922.01.T01 AT1G78370 42.932 191 104 4 16 204 13 200 3.23e-43 145
MsG0780038922.01.T01 AT1G78380 42.000 200 111 4 7 204 4 200 4.22e-42 142
MsG0780038922.01.T01 AT1G78320 43.564 202 109 4 5 204 2 200 5.27e-42 142
MsG0780038922.01.T01 AT1G74590 37.229 231 136 5 1 224 1 229 3.24e-41 140
MsG0780038922.01.T01 AT1G78340 43.103 174 96 3 6 177 3 175 7.57e-40 136
MsG0780038922.01.T01 AT1G53680 41.451 193 108 4 15 204 15 205 9.58e-38 131
MsG0780038922.01.T01 AT1G27140 35.681 213 127 4 1 204 1 212 5.75e-37 130
MsG0780038922.01.T01 AT1G17170 38.813 219 127 6 6 222 3 216 9.67e-37 128
MsG0780038922.01.T01 AT1G17180 38.806 201 118 4 6 204 3 200 1.42e-34 123
MsG0780038922.01.T01 AT1G17190 42.135 178 98 4 16 191 14 188 2.17e-34 122
MsG0780038922.01.T01 AT3G43800 36.493 211 125 6 4 208 2 209 4.79e-32 117
MsG0780038922.01.T01 AT1G78360 38.308 201 118 5 7 204 4 201 1.37e-31 115
MsG0780038922.01.T01 AT5G62480 33.486 218 107 5 10 215 11 202 4.28e-27 103
MsG0780038922.01.T01 AT5G62480 33.486 218 106 5 10 215 11 201 8.43e-27 102
MsG0780038922.01.T01 AT1G78320 36.000 200 98 4 6 204 3 173 2.49e-25 98.6
MsG0780038922.01.T01 AT2G02390 28.037 214 135 5 3 204 4 210 1.13e-12 65.5
MsG0780038922.01.T01 AT2G02390 26.754 228 127 6 3 204 4 217 1.18e-11 62.4
MsG0780038922.01.T01 AT2G02380 26.887 212 136 5 5 204 9 213 2.56e-11 61.6

Find 43 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCACGTTTC+TGG 0.188650 7:-55390388 MsG0780038922.01.T01:CDS
CAAGGATCTGAAGGCAATAT+TGG 0.242620 7:+55390413 None:intergenic
ATTGGCCTTGTTGACATTAC+TGG 0.271417 7:-55389396 MsG0780038922.01.T01:CDS
ACAGGAACTTTCTTATAAAC+AGG 0.283283 7:+55390512 None:intergenic
GAGCTCAAAGACAAGTTCTT+TGG 0.355329 7:-55389429 MsG0780038922.01.T01:CDS
CTCCACGATGGCATCAAATA+AGG 0.366405 7:-55390672 None:intergenic
TGGCTCCAATTGAATAACTT+TGG 0.369360 7:+55389300 None:intergenic
TACTTTATCATCTATGAACT+TGG 0.387024 7:+55390364 None:intergenic
CCTGTTACTTCTTCTACAAT+GGG 0.411122 7:+55389351 None:intergenic
AATTTCCAAAGTTATTCAAT+TGG 0.415545 7:-55389305 MsG0780038922.01.T01:CDS
ATCTCTACCCTGCACACAAA+TGG 0.417885 7:+55390617 None:intergenic
TTGGGTGGTTATTGAAGTCT+TGG 0.422102 7:+55389280 None:intergenic
TCCTAGACTAGAAACCCTTT+TGG 0.422199 7:-55389238 MsG0780038922.01.T01:CDS
TCCTGTTACTTCTTCTACAA+TGG 0.424084 7:+55389350 None:intergenic
ATCACAAGGGATTCTGATAT+AGG 0.433145 7:+55390470 None:intergenic
TTCTTTGGTGGAGAAGAGAT+TGG 0.437865 7:-55389414 MsG0780038922.01.T01:CDS
CCCATTGTAGAAGAAGTAAC+AGG 0.460334 7:-55389351 MsG0780038922.01.T01:CDS
GAGATCTTTCGAAGGCCAAA+AGG 0.460962 7:+55389223 None:intergenic
AGAGATTGAGAAGGGTATTG+AGG 0.468601 7:-55389484 MsG0780038922.01.T01:CDS
AGGCAAGTCCATTTGTGTGC+AGG 0.494329 7:-55390625 MsG0780038922.01.T01:CDS
CTCAAAGACAAGTTCTTTGG+TGG 0.495298 7:-55389426 MsG0780038922.01.T01:CDS
TTGAGTATATTGATGAGACT+TGG 0.504629 7:-55390445 MsG0780038922.01.T01:CDS
AGGAGTTGAATACAAATATG+AGG 0.510242 7:-55390579 MsG0780038922.01.T01:CDS
TTATCATTATGAACTAATAC+AGG 0.517988 7:+55390494 None:intergenic
AGATCCTTGTAAAAGAGCCT+TGG 0.519646 7:-55390399 MsG0780038922.01.T01:CDS
AGTGGCTCTTCAATTTCTTG+AGG 0.526966 7:-55389454 MsG0780038922.01.T01:CDS
GCCAAAAGGGTTTCTAGTCT+AGG 0.536473 7:+55389237 None:intergenic
GATGAGAAAGAGATTGAGAA+GGG 0.537394 7:-55389492 MsG0780038922.01.T01:CDS
AGATCTTTCGAAGGCCAAAA+GGG 0.542519 7:+55389224 None:intergenic
GGCAAGTCCATTTGTGTGCA+GGG 0.544381 7:-55390624 MsG0780038922.01.T01:CDS
CAGGAACTTTCTTATAAACA+GGG 0.564477 7:+55390513 None:intergenic
GAGATTGCTCTAAAACTGAA+AGG 0.570349 7:-55390599 MsG0780038922.01.T01:CDS
TGATGAGAAAGAGATTGAGA+AGG 0.573160 7:-55389493 MsG0780038922.01.T01:CDS
AATCTCTTTCTCATCAAGAG+TGG 0.590956 7:+55389500 None:intergenic
CAATATACTCAAGAATCACA+AGG 0.601780 7:+55390456 None:intergenic
CAATAACCACCCAATTGTCA+AGG 0.611678 7:-55389271 MsG0780038922.01.T01:CDS
TTCAGAACGAGATCTTTCGA+AGG 0.621786 7:+55389215 None:intergenic
GGGTATTGAGGAAACAGAAG+TGG 0.632493 7:-55389472 MsG0780038922.01.T01:CDS
AAAAGGGTTTCTAGTCTAGG+AGG 0.639156 7:+55389240 None:intergenic
AATATACTCAAGAATCACAA+GGG 0.678725 7:+55390457 None:intergenic
CTTGGACCAGAAACGTGCCA+AGG 0.686787 7:+55390382 None:intergenic
AGACTCCAGTAATGTCAACA+AGG 0.694962 7:+55389391 None:intergenic
CTGTTACTTCTTCTACAATG+GGG 0.700401 7:+55389352 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGATTAAAATATATTTAA+GGG + Chr7:55389996-55390015 None:intergenic 10.0%
!! TTATTTAACCAAAAAAATTA+TGG + Chr7:55389964-55389983 None:intergenic 10.0%
!! GAAGGATTAAAATATATTTA+AGG + Chr7:55389997-55390016 None:intergenic 15.0%
!!! AATTTTTCATTCATGAAATT+AGG - Chr7:55390049-55390068 MsG0780038922.01.T01:intron 15.0%
!!! ATGAATGAAAAATTTTAGAA+GGG + Chr7:55390043-55390062 None:intergenic 15.0%
!!! CCTCTAAAAAAATAAAAATA+GGG + Chr7:55390227-55390246 None:intergenic 15.0%
!!! TAAAATATTTCTTAGACTTT+TGG - Chr7:55390017-55390036 MsG0780038922.01.T01:intron 15.0%
!!! TCCTCTAAAAAAATAAAAAT+AGG + Chr7:55390228-55390247 None:intergenic 15.0%
!! AATTTCCAAAGTTATTCAAT+TGG - Chr7:55390554-55390573 MsG0780038922.01.T01:CDS 20.0%
!! TTATCATTATGAACTAATAC+AGG + Chr7:55389368-55389387 None:intergenic 20.0%
!!! AAAAGCCTAAGAAATATTTT+AGG - Chr7:55390150-55390169 MsG0780038922.01.T01:intron 20.0%
!!! AGTCTAAGAAATATTTTAGA+AGG + Chr7:55390015-55390034 None:intergenic 20.0%
!!! CATGAATGAAAAATTTTAGA+AGG + Chr7:55390044-55390063 None:intergenic 20.0%
!!! CCCTATTTTTATTTTTTTAG+AGG - Chr7:55390224-55390243 MsG0780038922.01.T01:intron 20.0%
!!! TAAAATATTTCTTAGGCTTT+TGG + Chr7:55390151-55390170 None:intergenic 20.0%
!!! TTGTTTTAACTAAAAACACA+CGG - Chr7:55389847-55389866 MsG0780038922.01.T01:intron 20.0%
! AATAGGGTTAAATAAGCAAA+TGG + Chr7:55390211-55390230 None:intergenic 25.0%
! AATATACTCAAGAATCACAA+GGG + Chr7:55389405-55389424 None:intergenic 25.0%
! AATCAAACGTTCGTATATTT+AGG - Chr7:55390181-55390200 MsG0780038922.01.T01:intron 25.0%
! TACTTTATCATCTATGAACT+TGG + Chr7:55389498-55389517 None:intergenic 25.0%
!! TAATTTTGCTTTGTGTAACT+CGG - Chr7:55389540-55389559 MsG0780038922.01.T01:intron 25.0%
!!! CATGGATGAAATTTTTTTGA+GGG - Chr7:55390124-55390143 MsG0780038922.01.T01:intron 25.0%
!!! TCATGGATGAAATTTTTTTG+AGG - Chr7:55390123-55390142 MsG0780038922.01.T01:intron 25.0%
AACCAAAAAAATTATGGACC+AGG + Chr7:55389958-55389977 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG + Chr7:55389350-55389369 None:intergenic 30.0%
AGAGTTACATGGAAAATACT+TGG + Chr7:55389729-55389748 None:intergenic 30.0%
AGGAGTTGAATACAAATATG+AGG - Chr7:55389280-55389299 MsG0780038922.01.T01:CDS 30.0%
CAATATACTCAAGAATCACA+AGG + Chr7:55389406-55389425 None:intergenic 30.0%
CAGGAACTTTCTTATAAACA+GGG + Chr7:55389349-55389368 None:intergenic 30.0%
GAGTTACATGGAAAATACTT+GGG + Chr7:55389728-55389747 None:intergenic 30.0%
GATGTTCATCTCAAATCAAA+TGG + Chr7:55389886-55389905 None:intergenic 30.0%
GTCCTCCTAAAATATTTCTT+AGG + Chr7:55390158-55390177 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG - Chr7:55389414-55389433 MsG0780038922.01.T01:CDS 30.0%
! AAAAATTATGGACCAGGTTT+TGG + Chr7:55389952-55389971 None:intergenic 30.0%
! AATTTTGCTTTGTGTAACTC+GGG - Chr7:55389541-55389560 MsG0780038922.01.T01:intron 30.0%
! GCAAATTTTCCTTGACAATT+GGG + Chr7:55390600-55390619 None:intergenic 30.0%
!! AGCCTAAGAAATATTTTAGG+AGG - Chr7:55390153-55390172 MsG0780038922.01.T01:intron 30.0%
!!! AACCTGGTCCATAATTTTTT+TGG - Chr7:55389953-55389972 MsG0780038922.01.T01:intron 30.0%
AACAGCAGATGCTAATTTCA+TGG - Chr7:55390106-55390125 MsG0780038922.01.T01:intron 35.0%
AATCTCTTTCTCATCAAGAG+TGG + Chr7:55390362-55390381 None:intergenic 35.0%
ACAACACATACAACACATCT+AGG - Chr7:55389644-55389663 MsG0780038922.01.T01:intron 35.0%
ACCTTTCAATTGTGATCAGA+CGG + Chr7:55389822-55389841 None:intergenic 35.0%
ATCACAAGGGATTCTGATAT+AGG + Chr7:55389392-55389411 None:intergenic 35.0%
GATGAGAAAGAGATTGAGAA+GGG - Chr7:55390367-55390386 MsG0780038922.01.T01:CDS 35.0%
GTCACCGTGATATTAAATCT+GGG - Chr7:55389584-55389603 MsG0780038922.01.T01:intron 35.0%
TGATGAGAAAGAGATTGAGA+AGG - Chr7:55390366-55390385 MsG0780038922.01.T01:intron 35.0%
TGGCTCCAATTGAATAACTT+TGG + Chr7:55390562-55390581 None:intergenic 35.0%
TGTCACCGTGATATTAAATC+TGG - Chr7:55389583-55389602 MsG0780038922.01.T01:intron 35.0%
! AAGGAAGAGTTGAAGCTTTT+TGG - Chr7:55389206-55389225 MsG0780038922.01.T01:CDS 35.0%
! AATTTTACAGCACCAAAACC+TGG - Chr7:55389937-55389956 MsG0780038922.01.T01:intron 35.0%
! AATTTTCCTTGACAATTGGG+TGG + Chr7:55390597-55390616 None:intergenic 35.0%
! ACCACTAGTCTCACAAATTA+AGG + Chr7:55390315-55390334 None:intergenic 35.0%
! CCTGTTACTTCTTCTACAAT+GGG + Chr7:55390511-55390530 None:intergenic 35.0%
! CTGTTACTTCTTCTACAATG+GGG + Chr7:55390510-55390529 None:intergenic 35.0%
! GAAGTTGGATTAGAGTTACA+TGG + Chr7:55389740-55389759 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG + Chr7:55390601-55390620 None:intergenic 35.0%
! TAATTTGTGAGACTAGTGGT+TGG - Chr7:55390315-55390334 MsG0780038922.01.T01:intron 35.0%
! TCACACACACACACAATTTT+TGG - Chr7:55389758-55389777 MsG0780038922.01.T01:intron 35.0%
! TCCTGTTACTTCTTCTACAA+TGG + Chr7:55390512-55390531 None:intergenic 35.0%
!! ACCTTAATTTGTGAGACTAG+TGG - Chr7:55390311-55390330 MsG0780038922.01.T01:intron 35.0%
!! GAGATTGCTCTAAAACTGAA+AGG - Chr7:55389260-55389279 MsG0780038922.01.T01:CDS 35.0%
!!! ACACACACAATTTTTGGAAC+AGG - Chr7:55389764-55389783 MsG0780038922.01.T01:intron 35.0%
!!! GTTGAAGCTTTTTGGAATGA+AGG - Chr7:55389214-55389233 MsG0780038922.01.T01:CDS 35.0%
AATTAGAGAGAGAGAGAGAG+AGG + Chr7:55389525-55389544 None:intergenic 40.0%
AATTAGCACACAGTTTCACG+CGG + Chr7:55389921-55389940 None:intergenic 40.0%
AGACTCCAGTAATGTCAACA+AGG + Chr7:55390471-55390490 None:intergenic 40.0%
AGATCCTTGTAAAAGAGCCT+TGG - Chr7:55389460-55389479 MsG0780038922.01.T01:CDS 40.0%
AGATCTTTCGAAGGCCAAAA+GGG + Chr7:55390638-55390657 None:intergenic 40.0%
AGTGGCTCTTCAATTTCTTG+AGG - Chr7:55390405-55390424 MsG0780038922.01.T01:CDS 40.0%
ATTGTGTGTGTGTGTGAAGT+TGG + Chr7:55389755-55389774 None:intergenic 40.0%
CAAGGATCTGAAGGCAATAT+TGG + Chr7:55389449-55389468 None:intergenic 40.0%
CAATAACCACCCAATTGTCA+AGG - Chr7:55390588-55390607 MsG0780038922.01.T01:CDS 40.0%
CCCATTGTAGAAGAAGTAAC+AGG - Chr7:55390508-55390527 MsG0780038922.01.T01:CDS 40.0%
CTCAAAGACAAGTTCTTTGG+TGG - Chr7:55390433-55390452 MsG0780038922.01.T01:CDS 40.0%
GAGCTCAAAGACAAGTTCTT+TGG - Chr7:55390430-55390449 MsG0780038922.01.T01:CDS 40.0%
GATGTGTTGTATGTGTTGTG+TGG + Chr7:55389643-55389662 None:intergenic 40.0%
GTGGCCCAGATTTAATATCA+CGG + Chr7:55389591-55389610 None:intergenic 40.0%
TTCAGAACGAGATCTTTCGA+AGG + Chr7:55390647-55390666 None:intergenic 40.0%
TTCTTTGGTGGAGAAGAGAT+TGG - Chr7:55390445-55390464 MsG0780038922.01.T01:CDS 40.0%
TTGGGTGGTTATTGAAGTCT+TGG + Chr7:55390582-55390601 None:intergenic 40.0%
! CTGGAGTCTTCGTATCTTTT+TGG - Chr7:55390482-55390501 MsG0780038922.01.T01:CDS 40.0%
! GCTCTTTTACAAGGATCTGA+AGG + Chr7:55389458-55389477 None:intergenic 40.0%
! TCCTAGACTAGAAACCCTTT+TGG - Chr7:55390621-55390640 MsG0780038922.01.T01:CDS 40.0%
!! AAAAGGGTTTCTAGTCTAGG+AGG + Chr7:55390622-55390641 None:intergenic 40.0%
!! AGAGATTGAGAAGGGTATTG+AGG - Chr7:55390375-55390394 MsG0780038922.01.T01:CDS 40.0%
!! ATTGGCCTTGTTGACATTAC+TGG - Chr7:55390463-55390482 MsG0780038922.01.T01:CDS 40.0%
ATCTCTACCCTGCACACAAA+TGG + Chr7:55389245-55389264 None:intergenic 45.0%
ATTATGTCTGGGCCACACAA+AGG + Chr7:55389685-55389704 None:intergenic 45.0%
CACAACACAACACCTTTGTG+TGG - Chr7:55389670-55389689 MsG0780038922.01.T01:intron 45.0%
GAGATCTTTCGAAGGCCAAA+AGG + Chr7:55390639-55390658 None:intergenic 45.0%
GCCGTCTGATCACAATTGAA+AGG - Chr7:55389818-55389837 MsG0780038922.01.T01:intron 45.0%
GTCACCGTGACATTATGTCT+GGG + Chr7:55389696-55389715 None:intergenic 45.0%
GTGTGGCAATGTATGTTGTG+TGG + Chr7:55389610-55389629 None:intergenic 45.0%
TGTCACCGTGACATTATGTC+TGG + Chr7:55389697-55389716 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG + Chr7:55389670-55389689 None:intergenic 45.0%
!! GCCAAAAGGGTTTCTAGTCT+AGG + Chr7:55390625-55390644 None:intergenic 45.0%
!! GGGTATTGAGGAAACAGAAG+TGG - Chr7:55390387-55390406 MsG0780038922.01.T01:CDS 45.0%
AAAGAGCCTTGGCACGTTTC+TGG - Chr7:55389471-55389490 MsG0780038922.01.T01:CDS 50.0%
AGGCAAGTCCATTTGTGTGC+AGG - Chr7:55389234-55389253 MsG0780038922.01.T01:CDS 50.0%
GGCAAGTCCATTTGTGTGCA+GGG - Chr7:55389235-55389254 MsG0780038922.01.T01:CDS 50.0%
GTGGCCCAGACATAATGTCA+CGG - Chr7:55389689-55389708 MsG0780038922.01.T01:intron 50.0%
TGTGTGGCTCACATGTTGTG+TGG + Chr7:55389627-55389646 None:intergenic 50.0%
TTGATTACAGCACCTGCAGC+AGG + Chr7:55389793-55389812 None:intergenic 50.0%
! CGTGCCAAGGCTCTTTTACA+AGG + Chr7:55389467-55389486 None:intergenic 50.0%
!! GTGTAACTCGGGAAGCACTT+GGG - Chr7:55389552-55389571 MsG0780038922.01.T01:intron 50.0%
!! TGTGTAACTCGGGAAGCACT+TGG - Chr7:55389551-55389570 MsG0780038922.01.T01:intron 50.0%
CTTGGACCAGAAACGTGCCA+AGG + Chr7:55389480-55389499 None:intergenic 55.0%
TGGAACAGGATTCCTGCTGC+AGG - Chr7:55389778-55389797 MsG0780038922.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 55389194 55390687 55389194 ID=MsG0780038922.01;Name=MsG0780038922.01
Chr7 mRNA 55389194 55390687 55389194 ID=MsG0780038922.01.T01;Parent=MsG0780038922.01;Name=MsG0780038922.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|225
Chr7 exon 55390367 55390687 55390367 ID=MsG0780038922.01.T01:exon:15446;Parent=MsG0780038922.01.T01
Chr7 exon 55389194 55389550 55389194 ID=MsG0780038922.01.T01:exon:15445;Parent=MsG0780038922.01.T01
Chr7 CDS 55390367 55390687 55390367 ID=MsG0780038922.01.T01:cds;Parent=MsG0780038922.01.T01
Chr7 CDS 55389194 55389550 55389194 ID=MsG0780038922.01.T01:cds;Parent=MsG0780038922.01.T01
Gene Sequence

>MsG0780038922.01.T01

ATGGCATCAAATAAGGAAGAGTTGAAGCTTTTTGGAATGAAGGCAAGTCCATTTGTGTGCAGGGTAGAGATTGCTCTAAAACTGAAAGGAGTTGAATACAAATATGAGGTAGAAAAGTTTAAGAACTTGAGTGATACACTCATCAATTACAACCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGATAAGCCTATATCAGAATCCCTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAATCCAATATTGCCTTCAGATCCTTGTAAAAGAGCCTTGGCACGTTTCTGGTCCAAGTTCATAGATGATAAATGGTTGGATGCTATAATAAAAGTTTCTTCCACTCTTGATGAGAAAGAGATTGAGAAGGGTATTGAGGAAACAGAAGTGGCTCTTCAATTTCTTGAGGATGAGCTCAAAGACAAGTTCTTTGGTGGAGAAGAGATTGGCCTTGTTGACATTACTGGAGTCTTCGTATCTTTTTGGCTCCCCATTGTAGAAGAAGTAACAGGACTGAAGTTGTTCACTAGTGAGAAATTTCCAAAGTTATTCAATTGGAGCCAAGACTTCAATAACCACCCAATTGTCAAGGAAAATTTGCCTCCTAGACTAGAAACCCTTTTGGCCTTCGAAAGATCTCGTTCTGAAAGTCTTGCTGCTTCAAAATAA

Protein sequence

>MsG0780038922.01.T01

MASNKEELKLFGMKASPFVCRVEIALKLKGVEYKYEVEKFKNLSDTLINYNPVYKKVPVLVHNDKPISESLVILEYIDETWKQNPILPSDPCKRALARFWSKFIDDKWLDAIIKVSSTLDEKEIEKGIEETEVALQFLEDELKDKFFGGEEIGLVDITGVFVSFWLPIVEEVTGLKLFTSEKFPKLFNWSQDFNNHPIVKENLPPRLETLLAFERSRSESLAASK*