AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018905.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018905.01.T01 MTR_4g019790 99.556 225 1 0 30 254 1 225 5.11e-164 453
MsG0480018905.01.T01 MTR_7g065720 65.611 221 75 1 30 249 1 221 4.36e-105 304
MsG0480018905.01.T01 MTR_7g065590 61.883 223 85 0 30 252 1 223 5.70e-104 301
MsG0480018905.01.T01 MTR_7g065660 61.778 225 86 0 30 254 1 225 9.75e-104 300
MsG0480018905.01.T01 MTR_7g065740 62.832 226 83 1 30 254 1 226 1.20e-103 300
MsG0480018905.01.T01 MTR_7g065290 63.927 219 79 0 30 248 1 219 1.65e-103 300
MsG0480018905.01.T01 MTR_7g065600 62.332 223 84 0 30 252 1 223 6.12e-103 298
MsG0480018905.01.T01 MTR_7g065750 64.602 226 79 1 30 254 1 226 2.90e-102 296
MsG0480018905.01.T01 MTR_7g065270 61.290 217 84 0 30 246 1 217 2.69e-96 281
MsG0480018905.01.T01 MTR_7g065265 60.829 217 85 0 30 246 1 217 2.25e-94 276
MsG0480018905.01.T01 MTR_7g065640 58.667 225 75 2 30 254 1 207 7.52e-94 275
MsG0480018905.01.T01 MTR_4g019780 60.094 213 83 2 33 244 5 216 7.89e-94 275
MsG0480018905.01.T01 MTR_7g065230 59.193 223 86 1 30 252 1 218 9.81e-94 275
MsG0480018905.01.T01 MTR_7g065630 60.444 225 85 1 30 254 19 239 1.92e-93 275
MsG0480018905.01.T01 MTR_7g065260 60.714 224 87 1 30 252 8 231 6.33e-91 268
MsG0480018905.01.T01 MTR_7g065710 57.488 207 84 1 37 243 5 207 2.74e-81 243
MsG0480018905.01.T01 MTR_7g065700 61.215 214 79 1 30 243 1 210 3.03e-80 241
MsG0480018905.01.T01 MTR_7g065680 56.889 225 93 1 30 254 1 221 1.79e-79 239
MsG0480018905.01.T01 MTR_1g090150 46.606 221 113 3 36 253 3 221 1.32e-65 204
MsG0480018905.01.T01 MTR_6g080440 45.714 210 112 2 34 242 1 209 2.26e-65 203
MsG0480018905.01.T01 MTR_8g087425 45.740 223 113 3 36 254 5 223 7.32e-65 202
MsG0480018905.01.T01 MTR_3g099757 44.889 225 120 3 30 253 1 222 1.28e-62 196
MsG0480018905.01.T01 MTR_1g115195 46.512 215 110 3 35 245 2 215 1.84e-60 190
MsG0480018905.01.T01 MTR_8g087410 44.091 220 121 2 36 254 6 224 1.07e-59 188
MsG0480018905.01.T01 MTR_4g059730 44.340 212 114 2 36 244 4 214 4.03e-59 187
MsG0480018905.01.T01 MTR_5g040430 41.441 222 122 3 30 244 1 221 6.84e-58 184
MsG0480018905.01.T01 MTR_1g090060 41.629 221 125 2 35 252 2 221 1.67e-55 178
MsG0480018905.01.T01 MTR_1g090070 41.441 222 127 1 35 253 8 229 2.75e-55 177
MsG0480018905.01.T01 MTR_1g090090 42.381 210 117 2 35 241 2 210 6.42e-54 174
MsG0480018905.01.T01 MTR_1g090100 42.654 211 117 2 37 244 3 212 1.06e-52 171
MsG0480018905.01.T01 MTR_5g037380 41.892 222 121 2 36 249 5 226 5.57e-51 166
MsG0480018905.01.T01 MTR_8g061950 40.359 223 123 4 30 244 1 221 1.69e-47 157
MsG0480018905.01.T01 MTR_2g070150 42.365 203 112 4 36 236 4 203 2.16e-47 156
MsG0480018905.01.T01 MTR_2g070140 42.051 195 108 4 50 242 2 193 2.58e-46 154
MsG0480018905.01.T01 MTR_2g070130 43.415 205 111 5 36 238 4 205 2.97e-46 154
MsG0480018905.01.T01 MTR_3g467420 38.498 213 126 4 31 241 4 213 5.92e-43 145
MsG0480018905.01.T01 MTR_2g070200 40.299 201 116 3 36 234 4 202 9.73e-43 145
MsG0480018905.01.T01 MTR_2g070180 39.901 203 117 4 36 236 4 203 6.72e-42 142
MsG0480018905.01.T01 MTR_2g070210 40.758 211 118 5 36 242 4 211 2.50e-41 141
MsG0480018905.01.T01 MTR_8g056940 38.942 208 122 4 36 241 4 208 8.69e-41 140
MsG0480018905.01.T01 MTR_2g070120 39.524 210 120 6 36 242 4 209 1.57e-40 139
MsG0480018905.01.T01 MTR_4g124130 43.979 191 99 6 34 220 2 188 3.11e-40 138
MsG0480018905.01.T01 MTR_2g070060 38.863 211 124 4 36 244 4 211 5.40e-40 138
MsG0480018905.01.T01 MTR_3g467430 36.967 211 128 4 33 241 6 213 8.45e-40 137
MsG0480018905.01.T01 MTR_5g076900 40.580 207 118 4 37 241 7 210 1.13e-39 137
MsG0480018905.01.T01 MTR_2g070070 40.758 211 120 4 36 244 4 211 2.74e-38 133
MsG0480018905.01.T01 MTR_0186s0030 46.715 137 71 2 36 171 4 139 3.96e-35 123
MsG0480018905.01.T01 MTR_2g070110 38.710 217 127 5 36 250 4 216 9.18e-34 122
MsG0480018905.01.T01 MTR_2g072120 50.769 65 31 1 80 143 2 66 5.27e-17 73.9
MsG0480018905.01.T01 MTR_5g037390 39.726 73 41 1 60 129 11 83 3.93e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018905.01.T01 AT3G09270 50.000 218 105 4 37 251 7 223 3.45e-78 236
MsG0480018905.01.T01 AT2G29420 47.489 219 113 2 36 253 9 226 6.12e-73 222
MsG0480018905.01.T01 AT2G29490 48.804 209 104 3 30 236 1 208 3.92e-63 197
MsG0480018905.01.T01 AT2G29480 49.763 211 99 4 30 236 1 208 2.62e-62 195
MsG0480018905.01.T01 AT2G29460 44.053 227 120 4 30 252 1 224 6.89e-59 186
MsG0480018905.01.T01 AT2G29450 46.602 206 108 2 33 236 3 208 2.08e-58 185
MsG0480018905.01.T01 AT2G29470 43.810 210 114 4 30 236 1 209 6.27e-55 176
MsG0480018905.01.T01 AT2G29440 43.541 209 114 4 30 236 1 207 1.55e-54 175
MsG0480018905.01.T01 AT1G59700 44.589 231 119 5 33 254 3 233 1.80e-52 170
MsG0480018905.01.T01 AT1G59670 43.836 219 115 3 33 243 3 221 2.72e-52 170
MsG0480018905.01.T01 AT1G10370 41.014 217 121 2 34 243 3 219 4.01e-50 164
MsG0480018905.01.T01 AT1G74590 38.136 236 128 5 30 253 1 230 2.90e-48 159
MsG0480018905.01.T01 AT1G27130 38.073 218 127 3 37 246 7 224 4.54e-48 159
MsG0480018905.01.T01 AT1G69920 39.726 219 124 4 37 247 35 253 6.55e-48 159
MsG0480018905.01.T01 AT5G62480 37.557 221 127 3 34 244 6 225 2.62e-47 157
MsG0480018905.01.T01 AT1G78380 42.308 208 115 4 36 241 4 208 1.09e-46 155
MsG0480018905.01.T01 AT1G69930 36.486 222 135 2 31 246 7 228 2.55e-46 154
MsG0480018905.01.T01 AT1G78340 40.865 208 118 4 36 241 4 208 3.12e-46 154
MsG0480018905.01.T01 AT1G78370 40.976 205 116 4 39 241 7 208 7.03e-46 153
MsG0480018905.01.T01 AT1G78320 41.546 207 114 5 36 239 4 206 3.95e-45 151
MsG0480018905.01.T01 AT1G17170 41.038 212 119 5 36 245 4 211 1.50e-44 149
MsG0480018905.01.T01 AT1G10360 36.744 215 129 2 36 243 5 219 8.63e-44 148
MsG0480018905.01.T01 AT1G53680 40.097 207 119 4 30 233 1 205 5.22e-43 145
MsG0480018905.01.T01 AT1G27140 38.073 218 126 3 37 245 7 224 9.49e-43 145
MsG0480018905.01.T01 AT1G17180 39.423 208 121 4 36 241 4 208 2.05e-42 144
MsG0480018905.01.T01 AT1G78360 38.571 210 123 5 35 241 3 209 5.08e-39 135
MsG0480018905.01.T01 AT3G43800 39.216 204 115 6 36 233 5 205 9.52e-39 135
MsG0480018905.01.T01 AT1G17190 38.785 214 124 5 30 241 1 209 1.55e-37 131
MsG0480018905.01.T01 AT1G78320 35.437 206 101 5 36 239 4 179 9.07e-30 110
MsG0480018905.01.T01 AT5G62480 29.545 220 120 3 34 244 6 199 5.44e-29 109
MsG0480018905.01.T01 AT5G62480 30.455 220 117 4 34 244 6 198 1.25e-28 108

Find 64 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCATCCTACTTAGCTTTC+TGG 0.070823 4:+11411574 MsG0480018905.01.T01:CDS
TCTAATAATGAGAATAATTT+TGG 0.150075 4:+11412006 MsG0480018905.01.T01:three_prime_UTR
CAAAATGTGGATGTGAATTT+TGG 0.201059 4:-11410648 None:intergenic
CTTCGAAATAGACCAATTTC+AGG 0.266474 4:+11411769 MsG0480018905.01.T01:exon
TTGAACTTCTCCTTGATCTT+TGG 0.266733 4:-11410704 None:intergenic
AGAAAGCCTTGGCTAGATTT+TGG 0.279971 4:+11410977 MsG0480018905.01.T01:CDS
TGAAGAAGCTGTAGGGTTAA+AGG 0.280702 4:+11411608 MsG0480018905.01.T01:CDS
TGCGGCATCACTCCTGAAAT+TGG 0.282807 4:-11411781 None:intergenic
GAACTCAAGCACAAATTCTT+TGG 0.284917 4:+11411522 MsG0480018905.01.T01:CDS
CAGGCACCTTCTTGTGAATA+GGG 0.332659 4:-11410852 None:intergenic
CTAGCCAAGGCTTTCTCATA+AGG 0.348130 4:-11410970 None:intergenic
AATTTCCTAAGCTCTATAAA+TGG 0.358102 4:+11411646 MsG0480018905.01.T01:CDS
CAAGGAGAAGTTCAATTGTT+AGG 0.359110 4:+11410712 MsG0480018905.01.T01:CDS
ACAGGCACCTTCTTGTGAAT+AGG 0.360494 4:-11410853 None:intergenic
ATTTGCACCCTTCGAACAAA+TGG 0.368308 4:-11410748 None:intergenic
GGGAGATTCTCTTTCACAAT+AGG 0.372294 4:-11411690 None:intergenic
GTTCATTCTCAAGAAATTGT+AGG 0.383078 4:-11411503 None:intergenic
TTGGATTAAGAGAGATGAAT+AGG 0.389339 4:+11411817 MsG0480018905.01.T01:three_prime_UTR
CTTACATTGAAGAAAATCTA+AGG 0.391102 4:+11410800 MsG0480018905.01.T01:CDS
CATGCAGCCTTTGATATTGC+TGG 0.393495 4:-11411429 None:intergenic
GATTGCACTACATATCAAAT+AGG 0.401905 4:-11411967 None:intergenic
AGAATATCTAAACTTTGAAA+TGG 0.419468 4:+11410681 MsG0480018905.01.T01:CDS
ATGTTTCATCAATGTATTCA+AGG 0.424371 4:-11410918 None:intergenic
AAGCCGAGGAGTCCATCTTT+AGG 0.438640 4:-11411714 None:intergenic
CAAATTGCTCTAAAACTAAA+GGG 0.440385 4:+11410766 MsG0480018905.01.T01:CDS
GCAAATTGCTCTAAAACTAA+AGG 0.446586 4:+11410765 MsG0480018905.01.T01:CDS
GAAGTTCAATTGTTAGGTGT+AGG 0.453999 4:+11410718 MsG0480018905.01.T01:CDS
TGACTCCATTTATAGAGCTT+AGG 0.457524 4:-11411651 None:intergenic
TTCATTCTCAAGAAATTGTA+GGG 0.458547 4:-11411502 None:intergenic
GAGAATCTCCCTCCTAAAGA+TGG 0.474661 4:+11411702 MsG0480018905.01.T01:CDS
GTTCAATTGTTAGGTGTAGG+AGG 0.480588 4:+11410721 MsG0480018905.01.T01:CDS
TTTGAAATGGCCAAAGATCA+AGG 0.500048 4:+11410694 MsG0480018905.01.T01:CDS
TTTGCACCCTTCGAACAAAT+GGG 0.505097 4:-11410747 None:intergenic
AGGGAGCCAGAAAGCTAAGT+AGG 0.513908 4:-11411580 None:intergenic
GATCACAAGGGACTCAGCTA+AGG 0.517350 4:-11410896 None:intergenic
GCCGCATGCTCGAGAGCCGT+TGG 0.520364 4:+11411798 MsG0480018905.01.T01:three_prime_UTR
AACAAAGAAGAACGTGAGAA+AGG 0.523741 4:+11411459 MsG0480018905.01.T01:CDS
GCTTTCTCATAAGGTTGTTG+AGG 0.532904 4:-11410961 None:intergenic
CTCAAGCACAAATTCTTTGG+TGG 0.534226 4:+11411525 MsG0480018905.01.T01:CDS
CTGTGATTGAAGAAGCTGTA+GGG 0.549308 4:+11411601 MsG0480018905.01.T01:CDS
CCGAGGAGTCCATCTTTAGG+AGG 0.552989 4:-11411711 None:intergenic
TCTAAGCTCTTCGCAAAATG+TGG 0.553334 4:-11410661 None:intergenic
CCTCCTAAAGATGGACTCCT+CGG 0.556560 4:+11411711 MsG0480018905.01.T01:CDS
GAGGAAGCCCATTTGTTCGA+AGG 0.559814 4:+11410740 MsG0480018905.01.T01:CDS
CAATGTATTCAAGGATCACA+AGG 0.561254 4:-11410909 None:intergenic
CCTACAGCTTCTTCAATCAC+AGG 0.561439 4:-11411600 None:intergenic
GTCGAGGTTCATTGATGACA+AGG 0.566263 4:+11410999 MsG0480018905.01.T01:CDS
TTGAATACATTGATGAAACA+TGG 0.571451 4:+11410920 MsG0480018905.01.T01:CDS
AGGAAGCCCATTTGTTCGAA+GGG 0.574450 4:+11410741 MsG0480018905.01.T01:CDS
GTGCAATCTTAATGATCGAA+AGG 0.588043 4:+11411982 MsG0480018905.01.T01:three_prime_UTR
ACAACCTTATGAGAAAGCCT+TGG 0.593342 4:+11410966 MsG0480018905.01.T01:CDS
ATCACAAGGGACTCAGCTAA+GGG 0.601842 4:-11410895 None:intergenic
ATTCATCTCTCTTAATCCAA+CGG 0.602023 4:-11411814 None:intergenic
CGAGGAGTCCATCTTTAGGA+GGG 0.604675 4:-11411710 None:intergenic
CAGCAATATCAAAGGCTGCA+TGG 0.606136 4:+11411430 MsG0480018905.01.T01:CDS
TCCAACGGCTCTCGAGCATG+CGG 0.607586 4:-11411799 None:intergenic
GTATAACCCTATTCACAAGA+AGG 0.611526 4:+11410846 MsG0480018905.01.T01:CDS
TGAATACATTGATGAAACAT+GGG 0.611722 4:+11410921 MsG0480018905.01.T01:CDS
TGGAGAAAACATTAGCATTG+TGG 0.621375 4:+11411545 MsG0480018905.01.T01:CDS
CCTGTGATTGAAGAAGCTGT+AGG 0.624586 4:+11411600 MsG0480018905.01.T01:CDS
GATTCTGCCAGCAATATCAA+AGG 0.632199 4:+11411422 MsG0480018905.01.T01:intron
CCTCGACCAAAATCTAGCCA+AGG 0.632913 4:-11410983 None:intergenic
CTACAGCTTCTTCAATCACA+GGG 0.633707 4:-11411599 None:intergenic
AATGTATTCAAGGATCACAA+GGG 0.737483 4:-11410908 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCACATTATTTTTAAA+AGG + Chr4:11411178-11411197 MsG0480018905.01.T01:intron 10.0%
!!! TTTTTTTTTGAAAAGATATT+AGG - Chr4:11411349-11411368 None:intergenic 10.0%
!!! TCTAATAATGAGAATAATTT+TGG + Chr4:11412006-11412025 MsG0480018905.01.T01:three_prime_UTR 15.0%
!! AATGAAATCAATTATGATGA+TGG - Chr4:11411313-11411332 None:intergenic 20.0%
!!! AGAATATCTAAACTTTGAAA+TGG + Chr4:11410681-11410700 MsG0480018905.01.T01:CDS 20.0%
!!! CGTTGTTTCATAATATTATT+TGG - Chr4:11411378-11411397 None:intergenic 20.0%
!!! TAATGTGAAATTTTTGTCAT+TGG - Chr4:11411170-11411189 None:intergenic 20.0%
! AATTTCCTAAGCTCTATAAA+TGG + Chr4:11411646-11411665 MsG0480018905.01.T01:CDS 25.0%
! ATGTTTCATCAATGTATTCA+AGG - Chr4:11410921-11410940 None:intergenic 25.0%
! CTTACATTGAAGAAAATCTA+AGG + Chr4:11410800-11410819 MsG0480018905.01.T01:CDS 25.0%
! TGAATACATTGATGAAACAT+GGG + Chr4:11410921-11410940 MsG0480018905.01.T01:CDS 25.0%
! TGTAATTCATCAATCATCAT+AGG - Chr4:11411289-11411308 None:intergenic 25.0%
! TTACCATTATGAACAAAAAC+AGG - Chr4:11410874-11410893 None:intergenic 25.0%
! TTCATTCTCAAGAAATTGTA+GGG - Chr4:11411505-11411524 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + Chr4:11410920-11410939 MsG0480018905.01.T01:CDS 25.0%
!!! CAAATTGCTCTAAAACTAAA+GGG + Chr4:11410766-11410785 MsG0480018905.01.T01:CDS 25.0%
AATGTATTCAAGGATCACAA+GGG - Chr4:11410911-11410930 None:intergenic 30.0%
ATTCATCTCTCTTAATCCAA+CGG - Chr4:11411817-11411836 None:intergenic 30.0%
CTAAAGCGAAAATTTAGACT+AGG - Chr4:11411204-11411223 None:intergenic 30.0%
GATTGCACTACATATCAAAT+AGG - Chr4:11411970-11411989 None:intergenic 30.0%
GTTCATTCTCAAGAAATTGT+AGG - Chr4:11411506-11411525 None:intergenic 30.0%
TAAGGTTGTTGAGGAAAAAT+AGG - Chr4:11410955-11410974 None:intergenic 30.0%
TTCATGATGTTTCATACACA+GGG - Chr4:11411250-11411269 None:intergenic 30.0%
TTGGATTAAGAGAGATGAAT+AGG + Chr4:11411817-11411836 MsG0480018905.01.T01:three_prime_UTR 30.0%
TTTCATGATGTTTCATACAC+AGG - Chr4:11411251-11411270 None:intergenic 30.0%
! CAAAATGTGGATGTGAATTT+TGG - Chr4:11410651-11410670 None:intergenic 30.0%
! CTAGTCTAAATTTTCGCTTT+AGG + Chr4:11411202-11411221 MsG0480018905.01.T01:intron 30.0%
!! GCAAATTGCTCTAAAACTAA+AGG + Chr4:11410765-11410784 MsG0480018905.01.T01:CDS 30.0%
!!! ATGTGAATTTTGGTTCAAAC+GGG - Chr4:11410641-11410660 None:intergenic 30.0%
!!! GATGTGAATTTTGGTTCAAA+CGG - Chr4:11410642-11410661 None:intergenic 30.0%
!!! TTCAAACGGGTTTTATTCTT+TGG - Chr4:11410628-11410647 None:intergenic 30.0%
AACAAAGAAGAACGTGAGAA+AGG + Chr4:11411459-11411478 MsG0480018905.01.T01:CDS 35.0%
ACGATAAACCACTATGATTC+TGG - Chr4:11411084-11411103 None:intergenic 35.0%
CAAGGAGAAGTTCAATTGTT+AGG + Chr4:11410712-11410731 MsG0480018905.01.T01:CDS 35.0%
CAATGTATTCAAGGATCACA+AGG - Chr4:11410912-11410931 None:intergenic 35.0%
CTTCGAAATAGACCAATTTC+AGG + Chr4:11411769-11411788 MsG0480018905.01.T01:exon 35.0%
GAACTCAAGCACAAATTCTT+TGG + Chr4:11411522-11411541 MsG0480018905.01.T01:CDS 35.0%
GAAGTTCAATTGTTAGGTGT+AGG + Chr4:11410718-11410737 MsG0480018905.01.T01:CDS 35.0%
GTATAACCCTATTCACAAGA+AGG + Chr4:11410846-11410865 MsG0480018905.01.T01:CDS 35.0%
GTGCAATCTTAATGATCGAA+AGG + Chr4:11411982-11412001 MsG0480018905.01.T01:three_prime_UTR 35.0%
TGACTCCATTTATAGAGCTT+AGG - Chr4:11411654-11411673 None:intergenic 35.0%
TGGAGAAAACATTAGCATTG+TGG + Chr4:11411545-11411564 MsG0480018905.01.T01:CDS 35.0%
TGTATCTACCAGAATCATAG+TGG + Chr4:11411073-11411092 MsG0480018905.01.T01:intron 35.0%
TTGAACTTCTCCTTGATCTT+TGG - Chr4:11410707-11410726 None:intergenic 35.0%
! TTTGAAATGGCCAAAGATCA+AGG + Chr4:11410694-11410713 MsG0480018905.01.T01:CDS 35.0%
!!! ACGGGTTTTATTCTTTGGTT+TGG - Chr4:11410623-11410642 None:intergenic 35.0%
!!! CGGGTTTTATTCTTTGGTTT+GGG - Chr4:11410622-11410641 None:intergenic 35.0%
!!! GTGCCTGTTTTTGTTCATAA+TGG + Chr4:11410868-11410887 MsG0480018905.01.T01:CDS 35.0%
ACAACCTTATGAGAAAGCCT+TGG + Chr4:11410966-11410985 MsG0480018905.01.T01:CDS 40.0%
ATCGAGATTTGAAAAAGCCG+AGG - Chr4:11411731-11411750 None:intergenic 40.0%
ATTTGCACCCTTCGAACAAA+TGG - Chr4:11410751-11410770 None:intergenic 40.0%
CTACAGCTTCTTCAATCACA+GGG - Chr4:11411602-11411621 None:intergenic 40.0%
CTCAAGCACAAATTCTTTGG+TGG + Chr4:11411525-11411544 MsG0480018905.01.T01:CDS 40.0%
CTGTGATTGAAGAAGCTGTA+GGG + Chr4:11411601-11411620 MsG0480018905.01.T01:CDS 40.0%
GATTCTGCCAGCAATATCAA+AGG + Chr4:11411422-11411441 MsG0480018905.01.T01:intron 40.0%
GCTTTCTCATAAGGTTGTTG+AGG - Chr4:11410964-11410983 None:intergenic 40.0%
GGGAGATTCTCTTTCACAAT+AGG - Chr4:11411693-11411712 None:intergenic 40.0%
GTTCAATTGTTAGGTGTAGG+AGG + Chr4:11410721-11410740 MsG0480018905.01.T01:CDS 40.0%
TCTAAGCTCTTCGCAAAATG+TGG - Chr4:11410664-11410683 None:intergenic 40.0%
TGAAGAAGCTGTAGGGTTAA+AGG + Chr4:11411608-11411627 MsG0480018905.01.T01:CDS 40.0%
TTTGCACCCTTCGAACAAAT+GGG - Chr4:11410750-11410769 None:intergenic 40.0%
! AGAAAGCCTTGGCTAGATTT+TGG + Chr4:11410977-11410996 MsG0480018905.01.T01:CDS 40.0%
ACAGGCACCTTCTTGTGAAT+AGG - Chr4:11410856-11410875 None:intergenic 45.0%
AGGAAGCCCATTTGTTCGAA+GGG + Chr4:11410741-11410760 MsG0480018905.01.T01:CDS 45.0%
ATCACAAGGGACTCAGCTAA+GGG - Chr4:11410898-11410917 None:intergenic 45.0%
CAGCAATATCAAAGGCTGCA+TGG + Chr4:11411430-11411449 MsG0480018905.01.T01:CDS 45.0%
CAGGCACCTTCTTGTGAATA+GGG - Chr4:11410855-11410874 None:intergenic 45.0%
CATGCAGCCTTTGATATTGC+TGG - Chr4:11411432-11411451 None:intergenic 45.0%
CCTACAGCTTCTTCAATCAC+AGG - Chr4:11411603-11411622 None:intergenic 45.0%
CCTGTGATTGAAGAAGCTGT+AGG + Chr4:11411600-11411619 MsG0480018905.01.T01:CDS 45.0%
CTAGCCAAGGCTTTCTCATA+AGG - Chr4:11410973-11410992 None:intergenic 45.0%
GAGAATCTCCCTCCTAAAGA+TGG + Chr4:11411702-11411721 MsG0480018905.01.T01:CDS 45.0%
TTTAGGTCTCAGCCATACGT+TGG + Chr4:11411219-11411238 MsG0480018905.01.T01:intron 45.0%
! CTGCATCCTACTTAGCTTTC+TGG + Chr4:11411574-11411593 MsG0480018905.01.T01:CDS 45.0%
! GTCGAGGTTCATTGATGACA+AGG + Chr4:11410999-11411018 MsG0480018905.01.T01:CDS 45.0%
!! ATTAAAATAGAAAATAAATA+TGG - Chr4:11411029-11411048 None:intergenic 5.0%
AAGCCGAGGAGTCCATCTTT+AGG - Chr4:11411717-11411736 None:intergenic 50.0%
AGGGAGCCAGAAAGCTAAGT+AGG - Chr4:11411583-11411602 None:intergenic 50.0%
CCTCGACCAAAATCTAGCCA+AGG - Chr4:11410986-11411005 None:intergenic 50.0%
GAGGAAGCCCATTTGTTCGA+AGG + Chr4:11410740-11410759 MsG0480018905.01.T01:CDS 50.0%
GATCACAAGGGACTCAGCTA+AGG - Chr4:11410899-11410918 None:intergenic 50.0%
GTCTCAGCCATACGTTGGAA+CGG + Chr4:11411224-11411243 MsG0480018905.01.T01:intron 50.0%
TGCGGCATCACTCCTGAAAT+TGG - Chr4:11411784-11411803 None:intergenic 50.0%
! CCTCCTAAAGATGGACTCCT+CGG + Chr4:11411711-11411730 MsG0480018905.01.T01:CDS 50.0%
! CGAGGAGTCCATCTTTAGGA+GGG - Chr4:11411713-11411732 None:intergenic 50.0%
!! CCTTGGCTAGATTTTGGTCG+AGG + Chr4:11410983-11411002 MsG0480018905.01.T01:CDS 50.0%
CCGAGGAGTCCATCTTTAGG+AGG - Chr4:11411714-11411733 None:intergenic 55.0%
CACAGGGCCGTTCCAACGTA+TGG - Chr4:11411234-11411253 None:intergenic 60.0%
TCCAACGGCTCTCGAGCATG+CGG - Chr4:11411802-11411821 None:intergenic 60.0%
GCCGCATGCTCGAGAGCCGT+TGG + Chr4:11411798-11411817 MsG0480018905.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 11410613 11412028 11410613 ID=MsG0480018905.01;Name=MsG0480018905.01
Chr4 mRNA 11410613 11412028 11410613 ID=MsG0480018905.01.T01;Parent=MsG0480018905.01;Name=MsG0480018905.01.T01;_AED=0.40;_eAED=0.40;_QI=0|1|1|1|1|1|2|249|254
Chr4 exon 11410613 11411020 11410613 ID=MsG0480018905.01.T01:exon:7146;Parent=MsG0480018905.01.T01
Chr4 exon 11411423 11412028 11411423 ID=MsG0480018905.01.T01:exon:7147;Parent=MsG0480018905.01.T01
Chr4 CDS 11410613 11411020 11410613 ID=MsG0480018905.01.T01:cds;Parent=MsG0480018905.01.T01
Chr4 CDS 11411423 11411779 11411423 ID=MsG0480018905.01.T01:cds;Parent=MsG0480018905.01.T01
Chr4 three_prime_UTR 11411780 11412028 11411780 ID=MsG0480018905.01.T01:three_prime_utr;Parent=MsG0480018905.01.T01
Gene Sequence

>MsG0480018905.01.T01

ACAACTCCCAAACCAAAGAATAAAACCCGTTTGAACCAAAATTCACATCCACATTTTGCGAAGAGCTTAGAATATCTAAACTTTGAAATGGCCAAAGATCAAGGAGAAGTTCAATTGTTAGGTGTAGGAGGAAGCCCATTTGTTCGAAGGGTGCAAATTGCTCTAAAACTAAAGGGTATTGAATACACTTACATTGAAGAAAATCTAAGGAACAAAAGTGATCTTCTTCTTAAGTATAACCCTATTCACAAGAAGGTGCCTGTTTTTGTTCATAATGGTAAACCCTTAGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAAACATGGGAGAACTATCCTATTTTTCCTCAACAACCTTATGAGAAAGCCTTGGCTAGATTTTGGTCGAGGTTCATTGATGACAAGATTCTGCCAGCAATATCAAAGGCTGCATGGACAGTGAACAAAGAAGAACGTGAGAAAGGCATTGAAGAATCATTGCAAGCCCTACAATTTCTTGAGAATGAACTCAAGCACAAATTCTTTGGTGGAGAAAACATTAGCATTGTGGACATTGCTGCATCCTACTTAGCTTTCTGGCTCCCTGTGATTGAAGAAGCTGTAGGGTTAAAGGTTCTTAGCAGTGACAAATTTCCTAAGCTCTATAAATGGAGTCAAGAATTCAACAATCATCCTATTGTGAAAGAGAATCTCCCTCCTAAAGATGGACTCCTCGGCTTTTTCAAATCTCGATATGCAGCGATTAGTGCTGCTTCGAAATAG

Protein sequence

>MsG0480018905.01.T01

TTPKPKNKTRLNQNSHPHFAKSLEYLNFEMAKDQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPLAESLVILEYIDETWENYPIFPQQPYEKALARFWSRFIDDKILPAISKAAWTVNKEEREKGIEESLQALQFLENELKHKFFGGENISIVDIAASYLAFWLPVIEEAVGLKVLSSDKFPKLYKWSQEFNNHPIVKENLPPKDGLLGFFKSRYAAISAASK*