AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004215.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004215.01.T01 MTR_8g101230 70.909 55 13 1 63 117 259 310 3.24e-14 67.4
MsG0180004215.01.T01 MTR_8g101230 70.909 55 13 1 63 117 265 316 3.39e-14 67.4
MsG0180004215.01.T01 MTR_2g085075 78.125 32 7 0 9 40 74 105 2.92e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 21 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTGGTTTACTGCTGTTTC+AGG 0.158664 1:-74952802 MsG0180004215.01.T01:CDS
TTTCAGGGAATTTGAAGTTT+TGG 0.308451 1:-74952786 MsG0180004215.01.T01:CDS
TCTTGGTCCTATTGAAGGTC+TGG 0.363083 1:-74952716 MsG0180004215.01.T01:CDS
ACGACACACTTACATTTACT+TGG 0.398885 1:+74949612 None:intergenic
TATTGAGATGAGATGTTTCA+AGG 0.399668 1:-74949092 MsG0180004215.01.T01:three_prime_UTR
TTTGCAAACTCAATATCAAT+TGG 0.420851 1:+74952754 None:intergenic
TCTTATCTTGGTCCTATTGA+AGG 0.428550 1:-74952721 MsG0180004215.01.T01:CDS
AAACAATTCAGATCTTATCT+TGG 0.434631 1:-74952733 MsG0180004215.01.T01:CDS
TTGCTACAGGTGGTTTGAAA+AGG 0.453757 1:-74949664 MsG0180004215.01.T01:intron
CTTACAACCAGACCTTCAAT+AGG 0.468380 1:+74952709 None:intergenic
GGAGTTCATACAAGATGATC+AGG 0.470741 1:-74949273 MsG0180004215.01.T01:CDS
TGTGGTTTACTGCTGTTTCA+GGG 0.479201 1:-74952801 MsG0180004215.01.T01:CDS
TCTCAATCTTCTAACAATCA+TGG 0.491896 1:-74949242 MsG0180004215.01.T01:CDS
GGGTTCTGTTTCCAAGTCTG+AGG 0.521871 1:-74949294 MsG0180004215.01.T01:CDS
TTGTATGAACTCCTCAGACT+TGG 0.557600 1:+74949283 None:intergenic
CAGTGGCGGTTGTTGCAAGA+AGG 0.570122 1:-74950997 MsG0180004215.01.T01:CDS
TAGTAATGTATCTCTTTGTG+TGG 0.578411 1:-74952819 None:intergenic
CTAGAAGGAGGTTTATGCAG+TGG 0.607525 1:-74951014 MsG0180004215.01.T01:intron
GAAGGAGGTTTATGCAGTGG+CGG 0.629473 1:-74951011 MsG0180004215.01.T01:CDS
TTGTTGCAAGAAGGCCCCTG+CGG 0.704702 1:-74950988 MsG0180004215.01.T01:intron
CGTATAAATCATCACCGCAG+GGG 0.710828 1:+74950974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTATATGATTTAATC+TGG - Chr1:74949227-74949246 MsG0180004215.01.T01:CDS 10.0%
!! TAAATAAATATATAAACACT+TGG + Chr1:74952191-74952210 None:intergenic 10.0%
!!! AATTTGAAATTTTGAATTTA+TGG - Chr1:74949558-74949577 MsG0180004215.01.T01:intron 10.0%
!!! TTAGTTTCATATTTTATATA+TGG - Chr1:74951455-74951474 MsG0180004215.01.T01:intron 10.0%
!! AAACAAAAAGTAAAGAAATT+TGG - Chr1:74952468-74952487 MsG0180004215.01.T01:intron 15.0%
!! ATACAAATTATAAACTCAAA+AGG + Chr1:74951797-74951816 None:intergenic 15.0%
!! ATATATTTATTTATTGCTAC+AGG - Chr1:74952198-74952217 MsG0180004215.01.T01:intron 15.0%
!! TATATTCCTTTAATTGTATT+TGG - Chr1:74952316-74952335 MsG0180004215.01.T01:intron 15.0%
!!! GTTTTAAAAGAAAAGTTTAA+TGG - Chr1:74952752-74952771 MsG0180004215.01.T01:CDS 15.0%
!! AAAAAATAAATTAGTTGGCA+AGG + Chr1:74950456-74950475 None:intergenic 20.0%
!! AAATAAATGCATAAAGAAGA+AGG + Chr1:74951128-74951147 None:intergenic 20.0%
!! TATTCAAAACAGAATTATCA+AGG - Chr1:74951839-74951858 MsG0180004215.01.T01:intron 20.0%
!! TATTCTATTCATTAACATAG+CGG + Chr1:74949349-74949368 None:intergenic 20.0%
!!! AGATCATTTGTTTTAGAATA+AGG - Chr1:74952445-74952464 MsG0180004215.01.T01:intron 20.0%
!!! AGTTTAGGAATTTTCAAATT+GGG - Chr1:74950720-74950739 MsG0180004215.01.T01:intron 20.0%
!!! ATAGTTTGATAGCTTAAAAT+AGG + Chr1:74952028-74952047 None:intergenic 20.0%
!!! GTTAAAATTTGTTGTTGTAT+TGG - Chr1:74950272-74950291 MsG0180004215.01.T01:intron 20.0%
!!! TACATCAAATTCTTTAAGAA+CGG + Chr1:74951433-74951452 None:intergenic 20.0%
!!! TAGTTTGATAGCTTAAAATA+GGG + Chr1:74952027-74952046 None:intergenic 20.0%
!!! TTTGTTTGTTATATTCTAGA+AGG - Chr1:74950846-74950865 MsG0180004215.01.T01:intron 20.0%
!!! TTTTACTGTTACACAAAAAA+GGG + Chr1:74949210-74949229 None:intergenic 20.0%
!!! TTTTCATATATTGTCTTTGT+TGG - Chr1:74950359-74950378 MsG0180004215.01.T01:intron 20.0%
!!! TTTTTACTGTTACACAAAAA+AGG + Chr1:74949211-74949230 None:intergenic 20.0%
! AAACAATTCAGATCTTATCT+TGG - Chr1:74949142-74949161 MsG0180004215.01.T01:three_prime_UTR 25.0%
! AAACATAACAAAGAAAAGTG+AGG + Chr1:74952154-74952173 None:intergenic 25.0%
! AATATCCAAACTGAATGTAA+AGG - Chr1:74949453-74949472 MsG0180004215.01.T01:intron 25.0%
! AATGCAATTCAAAAAGTCAT+CGG + Chr1:74950800-74950819 None:intergenic 25.0%
! ACACATTCGTAAAACAAAAA+GGG + Chr1:74951250-74951269 None:intergenic 25.0%
! ACCTTACCAAATACAATTAA+AGG + Chr1:74952325-74952344 None:intergenic 25.0%
! AGATATGTTGTTAAGTGATT+AGG - Chr1:74949721-74949740 MsG0180004215.01.T01:intron 25.0%
! AGTTGAGAATTGCAAAATTA+TGG - Chr1:74950145-74950164 MsG0180004215.01.T01:intron 25.0%
! ATACATTGTTCGATGAAAAT+CGG + Chr1:74951627-74951646 None:intergenic 25.0%
! ATATGTTGTTAAGTGATTAG+GGG - Chr1:74949723-74949742 MsG0180004215.01.T01:intron 25.0%
! CAATTAAGAAACAAAAGTGA+AGG + Chr1:74951654-74951673 None:intergenic 25.0%
! CATTACTAAAACACACATTT+AGG + Chr1:74951331-74951350 None:intergenic 25.0%
! CTGTTTAGTGTTTAATACAT+TGG + Chr1:74952082-74952101 None:intergenic 25.0%
! GAAGTATATCAAATGTTGTT+AGG + Chr1:74951605-74951624 None:intergenic 25.0%
! GATATGTTGTTAAGTGATTA+GGG - Chr1:74949722-74949741 MsG0180004215.01.T01:intron 25.0%
! GATTGAGAAGAAAAATCAAA+TGG - Chr1:74950527-74950546 MsG0180004215.01.T01:intron 25.0%
! TATAAGTAAAGAACATGAAG+TGG + Chr1:74950407-74950426 None:intergenic 25.0%
! TATTTATTTATTGCTACAGG+TGG - Chr1:74952201-74952220 MsG0180004215.01.T01:intron 25.0%
! TATTTCCTTTACATTCAGTT+TGG + Chr1:74949461-74949480 None:intergenic 25.0%
! TCCTTTAATTGTATTTGGTA+AGG - Chr1:74952321-74952340 MsG0180004215.01.T01:intron 25.0%
! TTGTACAATATAAAGTGAGA+TGG - Chr1:74952354-74952373 MsG0180004215.01.T01:intron 25.0%
! TTTGCAAACTCAATATCAAT+TGG + Chr1:74949124-74949143 None:intergenic 25.0%
!! ACACACTAAGAGAATATTTT+TGG + Chr1:74950254-74950273 None:intergenic 25.0%
!! ATAGCTTCGCAAAAATATTT+TGG - Chr1:74951576-74951595 MsG0180004215.01.T01:intron 25.0%
!! ATTTTTGCGAAGCTATATTA+TGG + Chr1:74951572-74951591 None:intergenic 25.0%
!! CAGTTTAGGAATTTTCAAAT+TGG - Chr1:74950719-74950738 MsG0180004215.01.T01:intron 25.0%
!! GTTTAGGAATTTTCAAATTG+GGG - Chr1:74950721-74950740 MsG0180004215.01.T01:intron 25.0%
!! TTCAAGACAATTTCAAGTAT+GGG + Chr1:74951410-74951429 None:intergenic 25.0%
!! TTTAGGAATTTTCAAATTGG+GGG - Chr1:74950722-74950741 MsG0180004215.01.T01:intron 25.0%
!! TTTTCATTCTACTTCAATAG+AGG + Chr1:74950310-74950329 None:intergenic 25.0%
!! TTTTTGTGGAATAATGTTAG+TGG - Chr1:74951888-74951907 MsG0180004215.01.T01:intron 25.0%
!!! AATCTTTTGTCTTTTGTTGT+TGG - Chr1:74949946-74949965 MsG0180004215.01.T01:intron 25.0%
!!! ATTTGAAGTTTTGGAAGAAA+AGG - Chr1:74949098-74949117 MsG0180004215.01.T01:three_prime_UTR 25.0%
!!! CTAAATGTGTGTTTTAGTAA+TGG - Chr1:74951329-74951348 MsG0180004215.01.T01:intron 25.0%
!!! TTCTAGTTTTCAAATCTCTA+TGG - Chr1:74949756-74949775 MsG0180004215.01.T01:intron 25.0%
!!! TTCTGTTTTGAATAAATCTG+AGG + Chr1:74951833-74951852 None:intergenic 25.0%
AAAACAGAATTATCAAGGCA+TGG - Chr1:74951844-74951863 MsG0180004215.01.T01:intron 30.0%
AAATGCGTACTTACTTTCAA+TGG + Chr1:74949834-74949853 None:intergenic 30.0%
AATCAAACATGTAAACGTAG+AGG + Chr1:74951192-74951211 None:intergenic 30.0%
AATTAGCAAGTGAGTCAAAT+GGG + Chr1:74951711-74951730 None:intergenic 30.0%
ACATTCAAAAGAAGGAATGA+AGG + Chr1:74949862-74949881 None:intergenic 30.0%
ATCATATAGTGGCAGTTATA+AGG - Chr1:74952381-74952400 MsG0180004215.01.T01:intron 30.0%
ATGATACTGAACACAATACT+TGG - Chr1:74952407-74952426 MsG0180004215.01.T01:intron 30.0%
CACACATTCGTAAAACAAAA+AGG + Chr1:74951251-74951270 None:intergenic 30.0%
CATTTGCTTGTGTAAAACTT+TGG - Chr1:74952126-74952145 MsG0180004215.01.T01:intron 30.0%
CTAATTATAAGACAACCCTT+CGG - Chr1:74951725-74951744 MsG0180004215.01.T01:intron 30.0%
GATGTATGATAGTATCTATG+TGG - Chr1:74949262-74949281 MsG0180004215.01.T01:CDS 30.0%
GTAATTGTCGTTCATATGAT+TGG - Chr1:74950671-74950690 MsG0180004215.01.T01:intron 30.0%
TAATTAGCAAGTGAGTCAAA+TGG + Chr1:74951712-74951731 None:intergenic 30.0%
TATTCGTTTCGTTATGCATT+TGG - Chr1:74949521-74949540 MsG0180004215.01.T01:intron 30.0%
TATTGAGATGAGATGTTTCA+AGG - Chr1:74952783-74952802 MsG0180004215.01.T01:CDS 30.0%
TCTACGTTTACATGTTTGAT+TGG - Chr1:74951191-74951210 MsG0180004215.01.T01:intron 30.0%
TCTCAATCTTCTAACAATCA+TGG - Chr1:74952633-74952652 MsG0180004215.01.T01:intron 30.0%
TGAACAATAGAGGAATTGAA+TGG + Chr1:74950609-74950628 None:intergenic 30.0%
! AAAGTAGCATGTTTTATCCT+CGG + Chr1:74951963-74951982 None:intergenic 30.0%
! AAATCTGAGGCACAAAAAAA+AGG + Chr1:74951820-74951839 None:intergenic 30.0%
! GTTCAAGACAATTTCAAGTA+TGG + Chr1:74951411-74951430 None:intergenic 30.0%
! TCAAGACAATTTCAAGTATG+GGG + Chr1:74951409-74951428 None:intergenic 30.0%
! TGGGAAGTATAACAAATAGA+TGG + Chr1:74951692-74951711 None:intergenic 30.0%
! TTTTGAATTTATGGTATCGC+AGG - Chr1:74949567-74949586 MsG0180004215.01.T01:intron 30.0%
!! ATAGCTTGCAATAGCTTTTT+AGG - Chr1:74950631-74950650 MsG0180004215.01.T01:intron 30.0%
!! CAAGCTATTTTGAACAATAG+AGG + Chr1:74950619-74950638 None:intergenic 30.0%
!! GTTTGTTATATTCTAGAAGG+AGG - Chr1:74950849-74950868 MsG0180004215.01.T01:intron 30.0%
!! TTTCAGGGAATTTGAAGTTT+TGG - Chr1:74949089-74949108 MsG0180004215.01.T01:three_prime_UTR 30.0%
!!! GAATAACCTGTTTTAGTATG+AGG + Chr1:74951358-74951377 None:intergenic 30.0%
!!! GTTTGTTGATTTTGCAGTTT+AGG - Chr1:74950705-74950724 MsG0180004215.01.T01:intron 30.0%
!!! TCATGTAACTTTGCTTTTTG+TGG - Chr1:74951874-74951893 MsG0180004215.01.T01:intron 30.0%
ACGACACACTTACATTTACT+TGG + Chr1:74952266-74952285 None:intergenic 35.0%
ATGTAGAAAACAACCATCCA+TGG + Chr1:74949800-74949819 None:intergenic 35.0%
ATTATGGCACTGTTTAGTCT+CGG - Chr1:74950161-74950180 MsG0180004215.01.T01:intron 35.0%
CATGTAAATGAGACTCATTG+TGG - Chr1:74950119-74950138 MsG0180004215.01.T01:intron 35.0%
CTAATGACTTCTTGCAAAGA+GGG + Chr1:74951770-74951789 None:intergenic 35.0%
CTAGGACAACATTCAAAAGA+AGG + Chr1:74949870-74949889 None:intergenic 35.0%
GAGATGGCTTAATCATATAG+TGG - Chr1:74952370-74952389 MsG0180004215.01.T01:intron 35.0%
GAGGTTGCTGAAGAAAAAAA+AGG - Chr1:74950982-74951001 MsG0180004215.01.T01:intron 35.0%
GATAGTATCTATGTGGTCAT+TGG - Chr1:74949269-74949288 MsG0180004215.01.T01:CDS 35.0%
GTTGAAAGTGAAACTCAATG+AGG + Chr1:74951220-74951239 None:intergenic 35.0%
GTTGTTGTATTGGACTCAAA+TGG - Chr1:74950282-74950301 MsG0180004215.01.T01:intron 35.0%
TAAATCACCACAGCAATTTG+AGG + Chr1:74951026-74951045 None:intergenic 35.0%
TAGAGACTCATTATTGAGAG+AGG - Chr1:74950191-74950210 MsG0180004215.01.T01:intron 35.0%
TCTAATGACTTCTTGCAAAG+AGG + Chr1:74951771-74951790 None:intergenic 35.0%
TCTATATTGTGTGTTAGTCG+AGG - Chr1:74950963-74950982 MsG0180004215.01.T01:intron 35.0%
TCTTATCTTGGTCCTATTGA+AGG - Chr1:74949154-74949173 MsG0180004215.01.T01:three_prime_UTR 35.0%
TGAATGGAAAGAAAGATGTG+TGG + Chr1:74950593-74950612 None:intergenic 35.0%
TGACCTTCAAAACACTATAG+CGG - Chr1:74949303-74949322 MsG0180004215.01.T01:CDS 35.0%
TGGTTTCCTCATACTAAAAC+AGG - Chr1:74951349-74951368 MsG0180004215.01.T01:intron 35.0%
TGTAGAAAACAACCATCCAT+GGG + Chr1:74949799-74949818 None:intergenic 35.0%
! CACGATTTTGTCTTTTCTTG+AGG - Chr1:74952551-74952570 MsG0180004215.01.T01:intron 35.0%
! TCATTATTGAGAGAGGTATG+TGG - Chr1:74950198-74950217 MsG0180004215.01.T01:intron 35.0%
! TGAATAGCCTTTTGTATGGT+GGG + Chr1:74951385-74951404 None:intergenic 35.0%
! TTGAATAGCCTTTTGTATGG+TGG + Chr1:74951386-74951405 None:intergenic 35.0%
! TTGACATTGAATCTAGCTTG+AGG + Chr1:74951931-74951950 None:intergenic 35.0%
! TTGTTGTTGGTTGTGAAAGT+AGG - Chr1:74949959-74949978 MsG0180004215.01.T01:intron 35.0%
! TTTAGAACCTCAAATTGCTG+TGG - Chr1:74951016-74951035 MsG0180004215.01.T01:intron 35.0%
AAAACACTATAGCGGCATAG+AGG - Chr1:74949311-74949330 MsG0180004215.01.T01:CDS 40.0%
AAACACTATAGCGGCATAGA+GGG - Chr1:74949312-74949331 MsG0180004215.01.T01:CDS 40.0%
AAGAGTAGACACAGTCACAT+CGG + Chr1:74950943-74950962 None:intergenic 40.0%
ACACAAAAAAGGGTTGTGTC+AGG + Chr1:74949200-74949219 None:intergenic 40.0%
AGTATCTATGTGGTCATTGG+CGG - Chr1:74949272-74949291 MsG0180004215.01.T01:CDS 40.0%
ATCTCTATGGATTTCGCTGA+TGG - Chr1:74949769-74949788 MsG0180004215.01.T01:intron 40.0%
CAAGATGACACAATTGGTAG+TGG + Chr1:74952054-74952073 None:intergenic 40.0%
CACTACCAATTGTGTCATCT+TGG - Chr1:74952052-74952071 MsG0180004215.01.T01:intron 40.0%
CATTTGCAGTTGCAACAATG+TGG + Chr1:74949910-74949929 None:intergenic 40.0%
CTTACAACCAGACCTTCAAT+AGG + Chr1:74949169-74949188 None:intergenic 40.0%
GAAGAAGAAGTAGAGAGTGA+AGG - Chr1:74949656-74949675 MsG0180004215.01.T01:CDS 40.0%
GAGGAGACAACAATAAAGCT+AGG + Chr1:74949888-74949907 None:intergenic 40.0%
GCGTACTTACTTTCAATGGA+AGG + Chr1:74949830-74949849 None:intergenic 40.0%
GGAGTTCATACAAGATGATC+AGG - Chr1:74952602-74952621 MsG0180004215.01.T01:intron 40.0%
GTCGTTCATATGATTGGTGT+GGG - Chr1:74950677-74950696 MsG0180004215.01.T01:intron 40.0%
TCGTTCATATGATTGGTGTG+GGG - Chr1:74950678-74950697 MsG0180004215.01.T01:intron 40.0%
TGTCGTTCATATGATTGGTG+TGG - Chr1:74950676-74950695 MsG0180004215.01.T01:intron 40.0%
TGTGTGGTTAACCTTAGTCA+CGG + Chr1:74950577-74950596 None:intergenic 40.0%
TTGCTACAGGTGGTTTGAAA+AGG - Chr1:74952211-74952230 MsG0180004215.01.T01:intron 40.0%
TTGTATGAACTCCTCAGACT+TGG + Chr1:74952595-74952614 None:intergenic 40.0%
TTTATGGTATCGCAGGATGA+AGG - Chr1:74949574-74949593 MsG0180004215.01.T01:intron 40.0%
! CTGATTCAATTTTCCTCCCT+TGG - Chr1:74952518-74952537 MsG0180004215.01.T01:intron 40.0%
! GGAATTTTCAAATTGGGGGT+TGG - Chr1:74950726-74950745 MsG0180004215.01.T01:intron 40.0%
! GGGTTGAATAGCCTTTTGTA+TGG + Chr1:74951389-74951408 None:intergenic 40.0%
! TCTTTTCTTGAGGCTCTTGA+GGG - Chr1:74952561-74952580 MsG0180004215.01.T01:intron 40.0%
!! ATGCCGCTATAGTGTTTTGA+AGG + Chr1:74949309-74949328 None:intergenic 40.0%
!! GAAACAACTCACTCTAGAGT+AGG + Chr1:74951106-74951125 None:intergenic 40.0%
!! TGTGGTTTACTGCTGTTTCA+GGG - Chr1:74949074-74949093 MsG0180004215.01.T01:three_prime_UTR 40.0%
AAGTAGAGAGTGAAGGTGAG+AGG - Chr1:74949663-74949682 MsG0180004215.01.T01:intron 45.0%
AATCGTGAACTTGTCTGCCA+AGG + Chr1:74952538-74952557 None:intergenic 45.0%
AATGTCAAGTAGATCTGCCG+AGG - Chr1:74951943-74951962 MsG0180004215.01.T01:intron 45.0%
ACCGTATAAATCATCACCGC+AGG + Chr1:74950906-74950925 None:intergenic 45.0%
AGAAGTTGAAGGACAAGGAG+AGG - Chr1:74949631-74949650 MsG0180004215.01.T01:CDS 45.0%
AGTAGAGAGTGAAGGTGAGA+GGG - Chr1:74949664-74949683 MsG0180004215.01.T01:intron 45.0%
ATCGTGAACTTGTCTGCCAA+GGG + Chr1:74952537-74952556 None:intergenic 45.0%
CAGTTCCACTTCCACTAAAC+CGG + Chr1:74949986-74950005 None:intergenic 45.0%
CATATGATTGGTGTGGGGTT+TGG - Chr1:74950683-74950702 MsG0180004215.01.T01:intron 45.0%
CCCTGCGGTGATGATTTATA+CGG - Chr1:74950902-74950921 MsG0180004215.01.T01:intron 45.0%
CCGTATAAATCATCACCGCA+GGG + Chr1:74950905-74950924 None:intergenic 45.0%
CGTATAAATCATCACCGCAG+GGG + Chr1:74950904-74950923 None:intergenic 45.0%
CTAGAAGGAGGTTTATGCAG+TGG - Chr1:74950861-74950880 MsG0180004215.01.T01:intron 45.0%
GCTGACCAAGATGACACAAT+TGG + Chr1:74952060-74952079 None:intergenic 45.0%
GGTGATGATTTATACGGTGG+AGG - Chr1:74950908-74950927 MsG0180004215.01.T01:intron 45.0%
GTTGGTTGTGAAAGTAGGAC+CGG - Chr1:74949964-74949983 MsG0180004215.01.T01:intron 45.0%
TAACCTTAGTCACGGAGAAG+AGG + Chr1:74950569-74950588 None:intergenic 45.0%
TAAGGAGAGGGAGAAGTTGA+AGG - Chr1:74949620-74949639 MsG0180004215.01.T01:intron 45.0%
TCTTGGTCCTATTGAAGGTC+TGG - Chr1:74949159-74949178 MsG0180004215.01.T01:three_prime_UTR 45.0%
TGATTTATCGTAGCAGCTCG+CGG - Chr1:74951039-74951058 MsG0180004215.01.T01:intron 45.0%
TGCGGTGATGATTTATACGG+TGG - Chr1:74950905-74950924 MsG0180004215.01.T01:intron 45.0%
TTCTGCTCCCACCATACAAA+AGG - Chr1:74951375-74951394 MsG0180004215.01.T01:intron 45.0%
TTGCAGTTGCAACAATGTGG+AGG + Chr1:74949907-74949926 None:intergenic 45.0%
TTGGGGGTTGGAATAAGAGT+AGG - Chr1:74950738-74950757 MsG0180004215.01.T01:intron 45.0%
! GTCTTTTCTTGAGGCTCTTG+AGG - Chr1:74952560-74952579 MsG0180004215.01.T01:intron 45.0%
! TGAAAGTAGGACCGGTTTAG+TGG - Chr1:74949972-74949991 MsG0180004215.01.T01:intron 45.0%
!! GTGTGGTTTACTGCTGTTTC+AGG - Chr1:74949073-74949092 MsG0180004215.01.T01:three_prime_UTR 45.0%
!! AATAAAAAAAATAAATTAGT+TGG + Chr1:74950461-74950480 None:intergenic 5.0%
AGGGCAAGAAGGTTAAGGAG+AGG - Chr1:74949607-74949626 MsG0180004215.01.T01:intron 50.0%
AGTGCACCATCTCAAACCGA+AGG + Chr1:74951744-74951763 None:intergenic 50.0%
ATGGTATCGCAGGATGAAGG+AGG - Chr1:74949577-74949596 MsG0180004215.01.T01:intron 50.0%
CGGTTTAGTGGAAGTGGAAC+TGG - Chr1:74949984-74950003 MsG0180004215.01.T01:intron 50.0%
GAAGGAGGTTTATGCAGTGG+CGG - Chr1:74950864-74950883 MsG0180004215.01.T01:intron 50.0%
GAGGGAGAAGTTGAAGGACA+AGG - Chr1:74949626-74949645 MsG0180004215.01.T01:CDS 50.0%
GGGCAAGAAGGTTAAGGAGA+GGG - Chr1:74949608-74949627 MsG0180004215.01.T01:intron 50.0%
GGGTTCTGTTTCCAAGTCTG+AGG - Chr1:74952581-74952600 MsG0180004215.01.T01:intron 50.0%
GTGCACCATCTCAAACCGAA+GGG + Chr1:74951743-74951762 None:intergenic 50.0%
TATAGCGGCATAGAGGGTTG+TGG - Chr1:74949318-74949337 MsG0180004215.01.T01:CDS 50.0%
TGGTATCGCAGGATGAAGGA+GGG - Chr1:74949578-74949597 MsG0180004215.01.T01:intron 50.0%
TGGTCTCAGTCACAGAGCAA+AGG + Chr1:74951552-74951571 None:intergenic 50.0%
! ATGTGGTCATTGGCGGATAG+TGG - Chr1:74949279-74949298 MsG0180004215.01.T01:CDS 50.0%
! GACAACCCTTCGGTTTGAGA+TGG - Chr1:74951735-74951754 MsG0180004215.01.T01:intron 50.0%
! TAGGACCGGTTTAGTGGAAG+TGG - Chr1:74949978-74949997 MsG0180004215.01.T01:intron 50.0%
! TTTCGCTGATGGTGAACCCA+TGG - Chr1:74949780-74949799 MsG0180004215.01.T01:intron 50.0%
!! CGCGGTGATGGTTTTTGCAA+TGG - Chr1:74951057-74951076 MsG0180004215.01.T01:intron 50.0%
AGAGAGTGAAGGTGAGAGGG+AGG - Chr1:74949667-74949686 MsG0180004215.01.T01:intron 55.0%
AGTAGGATTCGAGCCACTGC+AGG + Chr1:74951089-74951108 None:intergenic 55.0%
AGTGAAGGTGAGAGGGAGGT+TGG - Chr1:74949671-74949690 MsG0180004215.01.T01:intron 55.0%
ATCGCAGGATGAAGGAGGGT+GGG - Chr1:74949582-74949601 MsG0180004215.01.T01:intron 55.0%
ATCGGAGAGGGGAAGAAGAG+AGG - Chr1:74949696-74949715 MsG0180004215.01.T01:intron 55.0%
CAGTGGCGGTTGTTGCAAGA+AGG - Chr1:74950878-74950897 MsG0180004215.01.T01:intron 55.0%
CCTCCTCTTCTCCGTGACTA+AGG - Chr1:74950563-74950582 MsG0180004215.01.T01:intron 55.0%
CCTTAGTCACGGAGAAGAGG+AGG + Chr1:74950566-74950585 None:intergenic 55.0%
CGGCATAGAGGGTTGTGGTT+TGG - Chr1:74949323-74949342 MsG0180004215.01.T01:CDS 55.0%
GCAATGGTGATTGCCTGCAG+TGG - Chr1:74951073-74951092 MsG0180004215.01.T01:intron 55.0%
GGGGTAGGGCAAGAAGGTTA+AGG - Chr1:74949602-74949621 MsG0180004215.01.T01:intron 55.0%
GTGAACTTGTCTGCCAAGGG+AGG + Chr1:74952534-74952553 None:intergenic 55.0%
TATCGCAGGATGAAGGAGGG+TGG - Chr1:74949581-74949600 MsG0180004215.01.T01:intron 55.0%
TCGGAGAGGGGAAGAAGAGA+GGG - Chr1:74949697-74949716 MsG0180004215.01.T01:intron 55.0%
TTGTTGCAAGAAGGCCCCTG+CGG - Chr1:74950887-74950906 MsG0180004215.01.T01:intron 55.0%
! GCTGATGGTGAACCCATGGA+TGG - Chr1:74949784-74949803 MsG0180004215.01.T01:intron 55.0%
!! GTGAGAGGGAGGTTGGTGAT+CGG - Chr1:74949678-74949697 MsG0180004215.01.T01:intron 55.0%
AGGATGAAGGAGGGTGGGGT+AGG - Chr1:74949587-74949606 MsG0180004215.01.T01:intron 60.0%
ATCGTAGCAGCTCGCGGTGA+TGG - Chr1:74951045-74951064 MsG0180004215.01.T01:intron 60.0%
GGATGAAGGAGGGTGGGGTA+GGG - Chr1:74949588-74949607 MsG0180004215.01.T01:intron 60.0%
TCGCAGGATGAAGGAGGGTG+GGG - Chr1:74949583-74949602 MsG0180004215.01.T01:intron 60.0%
!! AGGGAGGTTGGTGATCGGAG+AGG - Chr1:74949683-74949702 MsG0180004215.01.T01:intron 60.0%
!! GGAGGTTGGTGATCGGAGAG+GGG - Chr1:74949685-74949704 MsG0180004215.01.T01:intron 60.0%
!! GGGAGGTTGGTGATCGGAGA+GGG - Chr1:74949684-74949703 MsG0180004215.01.T01:intron 60.0%
GAGGGTGGGGTAGGGCAAGA+AGG - Chr1:74949596-74949615 MsG0180004215.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 74949061 74952836 74949061 ID=MsG0180004215.01;Name=MsG0180004215.01
Chr1 mRNA 74949061 74952836 74949061 ID=MsG0180004215.01.T01;Parent=MsG0180004215.01;Name=MsG0180004215.01.T01;_AED=0.44;_eAED=0.62;_QI=0|0.33|0.5|1|1|1|4|159|117
Chr1 exon 74949061 74949353 74949061 ID=MsG0180004215.01.T01:exon:5706;Parent=MsG0180004215.01.T01
Chr1 exon 74949625 74949677 74949625 ID=MsG0180004215.01.T01:exon:5705;Parent=MsG0180004215.01.T01
Chr1 exon 74950989 74951032 74950989 ID=MsG0180004215.01.T01:exon:5704;Parent=MsG0180004215.01.T01
Chr1 exon 74952714 74952836 74952714 ID=MsG0180004215.01.T01:exon:5703;Parent=MsG0180004215.01.T01
Chr1 CDS 74952714 74952836 74952714 ID=MsG0180004215.01.T01:cds;Parent=MsG0180004215.01.T01
Chr1 CDS 74950989 74951032 74950989 ID=MsG0180004215.01.T01:cds;Parent=MsG0180004215.01.T01
Chr1 CDS 74949625 74949677 74949625 ID=MsG0180004215.01.T01:cds;Parent=MsG0180004215.01.T01
Chr1 CDS 74949220 74949353 74949220 ID=MsG0180004215.01.T01:cds;Parent=MsG0180004215.01.T01
Chr1 three_prime_UTR 74949061 74949219 74949061 ID=MsG0180004215.01.T01:three_prime_utr;Parent=MsG0180004215.01.T01
Gene Sequence

>MsG0180004215.01.T01

ATGTATCTCTTTGTGTGGTTTACTGCTGTTTCAGGGAATTTGAAGTTTTGGAAGAAAAGGCCAATTGATATTGAGTTTGCAAAACAATTCAGATCTTATCTTGGTCCTATTGAAGGTCTGGTTAAGGAGGTTTATGCAGTGGCGGTTGTTGCAAGAAGGCCCCTGCGGTGGTTTGAAAAGGACAGAGATTCGTCTCAGTTTGATATTGATCCAAGTAAATACAAGTTCACGATTTTGTCTTTTCTTGAGGCTCTTGAGGGTTCTGTTTCCAAGTCTGAGGAGTTCATACAAGATGATCAGGATTTAAGATCTCAATCTTCTAACAATCATGGCTGTATTGATGAATCTCAGTAG
Protein sequence

>MsG0180004215.01.T01

MYLFVWFTAVSGNLKFWKKRPIDIEFAKQFRSYLGPIEGLVKEVYAVAVVARRPLRWFEKDRDSSQFDIDPSKYKFTILSFLEALEGSVSKSEEFIQDDQDLRSQSSNNHGCIDESQ*