AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015564.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015564.01.T01 MTR_3g072650 91.577 463 6 1 1 463 1 430 0.0 867
MsG0380015564.01.T01 MTR_3g072650 97.710 393 9 0 1 393 1 393 0.0 803
MsG0380015564.01.T01 MTR_5g058920 59.544 482 136 10 1 463 1 442 7.46e-168 480
MsG0380015564.01.T01 MTR_7g451440 57.519 266 89 3 166 429 171 414 4.10e-101 310
MsG0380015564.01.T01 MTR_4g099180 71.038 183 53 0 181 363 168 350 4.67e-95 293
MsG0380015564.01.T01 MTR_8g007500 56.569 274 97 3 181 454 193 444 4.72e-88 276
MsG0380015564.01.T01 MTR_4g099180 70.833 120 35 0 181 300 168 287 2.53e-59 197
MsG0380015564.01.T01 MTR_4g099180 37.398 123 77 0 224 346 165 287 4.38e-20 91.3
MsG0380015564.01.T01 MTR_4g099180 70.833 120 35 0 181 300 168 287 2.69e-59 197
MsG0380015564.01.T01 MTR_4g099180 37.097 124 78 0 223 346 164 287 5.24e-20 90.9
MsG0380015564.01.T01 MTR_8g080860 37.374 198 101 2 184 358 19 216 1.39e-30 120
MsG0380015564.01.T01 MTR_8g080860 34.783 184 120 0 172 355 53 236 6.33e-28 112
MsG0380015564.01.T01 MTR_8g080860 36.196 163 104 0 179 341 106 268 4.22e-27 110
MsG0380015564.01.T01 MTR_8g080860 32.843 204 134 1 180 380 84 287 2.02e-26 108
MsG0380015564.01.T01 MTR_8g080860 32.061 131 89 0 228 358 17 147 1.60e-16 80.1
MsG0380015564.01.T01 MTR_8g080860 37.391 115 72 0 175 289 148 262 3.47e-15 76.3
MsG0380015564.01.T01 MTR_8g080860 37.374 198 101 2 184 358 15 212 1.88e-30 119
MsG0380015564.01.T01 MTR_8g080860 34.783 184 120 0 172 355 49 232 7.94e-28 112
MsG0380015564.01.T01 MTR_8g080860 36.196 163 104 0 179 341 102 264 5.41e-27 110
MsG0380015564.01.T01 MTR_8g080860 32.843 204 134 1 180 380 80 283 2.66e-26 108
MsG0380015564.01.T01 MTR_8g080860 32.061 131 89 0 228 358 13 143 1.90e-16 80.1
MsG0380015564.01.T01 MTR_8g080860 37.391 115 72 0 175 289 144 258 3.76e-15 76.3
MsG0380015564.01.T01 MTR_8g088930 35.429 175 113 0 184 358 12 186 2.37e-29 122
MsG0380015564.01.T01 MTR_8g088930 30.986 142 95 1 219 360 4 142 3.78e-15 78.6
MsG0380015564.01.T01 MTR_8g088930 35.965 114 73 0 185 298 82 195 5.83e-13 71.6
MsG0380015564.01.T01 MTR_8g088930 39.785 93 56 0 180 272 100 192 2.90e-12 69.3
MsG0380015564.01.T01 MTR_8g088930 35.429 175 113 0 184 358 12 186 2.38e-29 122
MsG0380015564.01.T01 MTR_8g088930 30.986 142 95 1 219 360 4 142 3.88e-15 78.6
MsG0380015564.01.T01 MTR_8g088930 35.965 114 73 0 185 298 82 195 6.03e-13 71.6
MsG0380015564.01.T01 MTR_8g088930 39.785 93 56 0 180 272 100 192 2.92e-12 69.3
MsG0380015564.01.T01 MTR_8g088930 35.429 175 113 0 184 358 12 186 7.17e-29 120
MsG0380015564.01.T01 MTR_8g088930 30.986 142 95 1 219 360 4 142 1.05e-14 77.0
MsG0380015564.01.T01 MTR_8g088930 35.965 114 73 0 185 298 82 195 1.00e-12 70.9
MsG0380015564.01.T01 MTR_8g088930 39.785 93 56 0 180 272 100 192 4.74e-12 68.6
MsG0380015564.01.T01 MTR_8g088930 35.429 175 113 0 184 358 12 186 7.56e-29 120
MsG0380015564.01.T01 MTR_8g088930 30.986 142 95 1 219 360 4 142 1.13e-14 77.0
MsG0380015564.01.T01 MTR_8g088930 35.965 114 73 0 185 298 82 195 1.01e-12 70.9
MsG0380015564.01.T01 MTR_8g088930 39.785 93 56 0 180 272 100 192 4.81e-12 68.6
MsG0380015564.01.T01 MTR_8g092090 34.848 198 98 1 183 349 7 204 2.98e-27 109
MsG0380015564.01.T01 MTR_8g092090 35.032 157 102 0 175 331 76 232 1.07e-22 97.1
MsG0380015564.01.T01 MTR_8g092090 31.250 128 80 1 231 350 9 136 3.54e-11 63.5
MsG0380015564.01.T01 MTR_5g459450 33.333 189 126 0 160 348 44 232 1.11e-25 110
MsG0380015564.01.T01 MTR_5g459450 36.508 126 80 0 233 358 71 196 2.10e-17 85.5
MsG0380015564.01.T01 MTR_4g107460 34.286 175 110 1 190 364 61 230 1.78e-23 101
MsG0380015564.01.T01 MTR_4g107460 33.500 200 109 2 183 358 7 206 4.15e-21 94.7
MsG0380015564.01.T01 MTR_4g107460 31.579 152 104 0 180 331 97 248 1.49e-17 84.0
MsG0380015564.01.T01 MTR_4g107460 32.061 131 88 1 231 360 9 139 2.27e-11 65.5
MsG0380015564.01.T01 MTR_1g050740 30.000 200 134 1 162 355 32 231 1.93e-23 104
MsG0380015564.01.T01 MTR_1g050740 30.464 151 105 0 175 325 97 247 9.33e-15 77.4
MsG0380015564.01.T01 MTR_7g089950 32.317 164 111 0 185 348 71 234 2.14e-23 103
MsG0380015564.01.T01 MTR_7g089950 30.102 196 115 3 169 358 19 198 8.82e-18 86.7
MsG0380015564.01.T01 MTR_7g089950 30.159 126 88 0 184 309 116 241 1.33e-12 70.5
MsG0380015564.01.T01 MTR_8g039100 30.570 193 128 1 169 355 31 223 4.89e-23 102
MsG0380015564.01.T01 MTR_8g039100 29.189 185 128 1 179 360 70 254 1.95e-17 85.5
MsG0380015564.01.T01 MTR_8g039100 33.803 142 93 1 218 358 39 180 9.71e-15 77.0
MsG0380015564.01.T01 MTR_3g073100 34.054 185 121 1 165 348 37 221 1.06e-22 102
MsG0380015564.01.T01 MTR_3g073100 31.973 147 100 0 184 330 80 226 1.30e-17 86.3
MsG0380015564.01.T01 MTR_3g073100 35.398 113 73 0 246 358 73 185 8.14e-14 74.3
MsG0380015564.01.T01 MTR_8g095240 30.242 248 133 5 176 389 41 282 2.07e-22 99.4
MsG0380015564.01.T01 MTR_8g095240 31.720 186 117 1 183 358 2 187 7.83e-20 92.0
MsG0380015564.01.T01 MTR_8g095240 33.810 210 105 4 180 355 114 323 4.75e-18 86.7
MsG0380015564.01.T01 MTR_8g095240 32.418 182 118 3 171 347 159 340 7.50e-18 85.9
MsG0380015564.01.T01 MTR_1g062740 32.121 165 112 0 179 343 68 232 1.03e-20 95.9
MsG0380015564.01.T01 MTR_1g062740 30.000 190 131 1 169 358 37 224 4.62e-19 90.9
MsG0380015564.01.T01 MTR_1g062740 34.058 138 68 2 184 298 96 233 4.57e-15 78.2
MsG0380015564.01.T01 MTR_1g062740 29.730 148 81 1 213 360 56 180 1.86e-13 73.2
MsG0380015564.01.T01 MTR_3g097260 34.503 171 112 0 185 355 55 225 1.40e-20 95.1
MsG0380015564.01.T01 MTR_3g097260 31.538 130 89 0 184 313 100 229 5.44e-14 74.7
MsG0380015564.01.T01 MTR_3g097260 37.500 128 80 0 233 360 57 184 3.55e-13 72.4
MsG0380015564.01.T01 MTR_8g080340 37.313 134 84 0 208 341 19 152 5.73e-20 87.4
MsG0380015564.01.T01 MTR_8g080340 29.730 148 101 1 236 380 24 171 2.86e-15 73.9
MsG0380015564.01.T01 MTR_3g014650 31.579 171 105 2 185 355 89 247 1.43e-19 92.4
MsG0380015564.01.T01 MTR_3g014650 30.435 138 96 0 184 321 122 259 5.31e-14 74.7
MsG0380015564.01.T01 MTR_3g014650 34.167 120 79 0 161 280 145 264 3.24e-12 69.3
MsG0380015564.01.T01 MTR_8g095170 32.955 176 111 2 185 359 30 199 2.79e-19 91.3
MsG0380015564.01.T01 MTR_8g080310 32.867 143 96 0 190 332 15 157 3.61e-19 84.7
MsG0380015564.01.T01 MTR_8g080310 34.848 132 86 0 227 358 6 137 3.01e-18 82.0
MsG0380015564.01.T01 MTR_8g080310 34.091 132 87 0 176 307 24 155 1.70e-14 71.2
MsG0380015564.01.T01 MTR_8g080310 35.185 108 70 0 179 286 50 157 2.35e-12 65.1
MsG0380015564.01.T01 MTR_8g095170 32.955 176 111 2 185 359 30 199 6.48e-19 89.7
MsG0380015564.01.T01 MTR_5g010840 33.140 172 107 1 185 356 181 344 1.10e-16 82.0
MsG0380015564.01.T01 MTR_5g010840 27.000 200 130 3 184 368 134 332 5.93e-12 67.4
MsG0380015564.01.T01 MTR_2g078470 31.088 193 110 1 185 354 148 340 1.61e-15 78.2
MsG0380015564.01.T01 MTR_2g078470 29.126 206 122 2 185 367 79 283 2.90e-15 77.4
MsG0380015564.01.T01 MTR_2g078470 29.032 217 128 3 175 368 2 215 2.97e-13 71.6
MsG0380015564.01.T01 MTR_2g078470 34.028 144 95 0 185 328 217 360 3.72e-12 68.2
MsG0380015564.01.T01 MTR_6g043150 31.088 193 110 1 185 354 79 271 6.54e-15 75.9
MsG0380015564.01.T01 MTR_6g043150 32.955 176 116 2 181 355 6 180 1.13e-14 75.5
MsG0380015564.01.T01 MTR_6g043150 30.058 173 121 0 173 345 21 193 1.78e-13 71.6
MsG0380015564.01.T01 MTR_6g043150 31.285 179 100 2 184 339 147 325 1.59e-12 68.9
MsG0380015564.01.T01 MTR_6g043150 30.000 130 91 0 227 356 6 135 3.54e-12 67.8
MsG0380015564.01.T01 MTR_8g080350 37.288 118 72 1 213 330 87 202 5.36e-14 73.9
MsG0380015564.01.T01 MTR_8g080350 25.551 227 111 4 180 358 121 337 1.20e-12 69.7
MsG0380015564.01.T01 MTR_3g023310 39.175 97 49 1 269 355 11 107 3.87e-12 65.1
MsG0380015564.01.T01 MTR_8g092410 32.558 129 84 2 223 348 148 276 1.89e-11 65.9
MsG0380015564.01.T01 MTR_1g112280 29.851 134 94 0 227 360 609 742 5.72e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015564.01.T01 AT1G77660 54.701 468 152 9 6 461 2 421 2.75e-149 432
MsG0380015564.01.T01 AT1G21920 56.559 465 145 8 5 461 2 417 2.60e-147 427
MsG0380015564.01.T01 AT1G21920 59.008 383 135 6 5 380 2 369 6.68e-141 409
MsG0380015564.01.T01 AT4G17080 47.978 371 149 6 86 453 173 502 6.19e-100 309
MsG0380015564.01.T01 AT2G35170 46.809 329 141 5 105 428 147 446 4.08e-92 288
MsG0380015564.01.T01 AT1G21980 32.828 198 133 0 163 360 54 251 2.56e-28 119
MsG0380015564.01.T01 AT1G21980 34.951 103 67 0 161 263 144 246 3.55e-11 65.9
MsG0380015564.01.T01 AT1G10900 35.165 182 118 0 177 358 3 184 5.38e-27 115
MsG0380015564.01.T01 AT1G10900 35.780 109 70 0 190 298 85 193 2.96e-12 69.3
MsG0380015564.01.T01 AT1G10900 36.170 94 60 0 180 273 98 191 5.45e-11 65.5
MsG0380015564.01.T01 AT1G10900 35.165 182 118 0 177 358 3 184 5.38e-27 115
MsG0380015564.01.T01 AT1G10900 35.780 109 70 0 190 298 85 193 2.96e-12 69.3
MsG0380015564.01.T01 AT1G10900 36.170 94 60 0 180 273 98 191 5.45e-11 65.5
MsG0380015564.01.T01 AT1G10900 35.165 182 118 0 177 358 3 184 5.38e-27 115
MsG0380015564.01.T01 AT1G10900 35.780 109 70 0 190 298 85 193 2.96e-12 69.3
MsG0380015564.01.T01 AT1G10900 36.170 94 60 0 180 273 98 191 5.45e-11 65.5
MsG0380015564.01.T01 AT1G60890 33.714 175 116 0 184 358 22 196 1.01e-25 111
MsG0380015564.01.T01 AT1G60890 34.351 131 86 0 230 360 22 152 1.14e-16 83.2
MsG0380015564.01.T01 AT1G60890 37.234 94 59 0 180 273 110 203 8.84e-14 74.3
MsG0380015564.01.T01 AT1G60890 35.088 114 74 0 185 298 92 205 2.61e-13 72.8
MsG0380015564.01.T01 AT1G60890 27.586 174 102 2 184 333 45 218 2.97e-13 72.8
MsG0380015564.01.T01 AT1G60890 33.714 175 116 0 184 358 10 184 1.35e-25 110
MsG0380015564.01.T01 AT1G60890 34.351 131 86 0 230 360 10 140 1.30e-16 83.2
MsG0380015564.01.T01 AT1G60890 37.234 94 59 0 180 273 98 191 1.01e-13 73.9
MsG0380015564.01.T01 AT1G60890 35.088 114 74 0 185 298 80 193 3.08e-13 72.4
MsG0380015564.01.T01 AT1G60890 27.586 174 102 2 184 333 33 206 3.64e-13 72.4
MsG0380015564.01.T01 AT1G77740 34.884 172 112 0 185 356 77 248 2.53e-25 110
MsG0380015564.01.T01 AT1G77740 35.714 126 81 0 233 358 79 204 5.46e-16 81.3
MsG0380015564.01.T01 AT1G77740 34.579 107 68 1 157 263 143 247 2.20e-12 69.7
MsG0380015564.01.T01 AT1G77740 34.884 172 112 0 185 356 77 248 2.53e-25 110
MsG0380015564.01.T01 AT1G77740 35.714 126 81 0 233 358 79 204 5.46e-16 81.3
MsG0380015564.01.T01 AT1G77740 34.579 107 68 1 157 263 143 247 2.20e-12 69.7
MsG0380015564.01.T01 AT2G41210 32.778 180 115 1 182 355 61 240 5.07e-25 108
MsG0380015564.01.T01 AT2G41210 33.149 181 120 1 180 360 88 267 7.37e-23 102
MsG0380015564.01.T01 AT2G41210 37.500 128 80 0 233 360 72 199 3.59e-19 91.3
MsG0380015564.01.T01 AT3G56960 29.101 189 134 0 167 355 54 242 4.32e-24 106
MsG0380015564.01.T01 AT3G56960 30.939 181 124 1 180 360 90 269 1.42e-21 98.6
MsG0380015564.01.T01 AT3G56960 29.101 189 134 0 167 355 54 242 4.32e-24 106
MsG0380015564.01.T01 AT3G56960 30.939 181 124 1 180 360 90 269 1.42e-21 98.6
MsG0380015564.01.T01 AT2G26420 32.967 182 120 1 164 345 34 213 5.17e-22 99.8
MsG0380015564.01.T01 AT2G26420 34.667 150 98 0 183 332 74 223 2.55e-18 88.2
MsG0380015564.01.T01 AT2G26420 34.921 126 82 0 233 358 55 180 4.11e-16 81.6
MsG0380015564.01.T01 AT2G26420 32.967 182 120 1 164 345 34 213 5.31e-22 99.8
MsG0380015564.01.T01 AT2G26420 34.667 150 98 0 183 332 74 223 2.59e-18 88.2
MsG0380015564.01.T01 AT2G26420 34.921 126 82 0 233 358 55 180 4.31e-16 81.6
MsG0380015564.01.T01 AT2G26420 32.967 182 120 1 164 345 34 213 5.31e-22 99.8
MsG0380015564.01.T01 AT2G26420 34.667 150 98 0 183 332 74 223 2.59e-18 88.2
MsG0380015564.01.T01 AT2G26420 34.921 126 82 0 233 358 55 180 4.31e-16 81.6
MsG0380015564.01.T01 AT3G07960 30.994 171 118 0 185 355 27 197 6.45e-22 99.4
MsG0380015564.01.T01 AT3G07960 30.488 164 114 0 180 343 45 208 2.01e-20 94.7
MsG0380015564.01.T01 AT3G07960 35.714 126 81 0 233 358 29 154 8.45e-18 86.7
MsG0380015564.01.T01 AT3G07960 29.252 147 104 0 175 321 63 209 6.57e-14 74.7
MsG0380015564.01.T01 AT3G07960 31.176 170 117 0 186 355 28 197 8.04e-22 99.0
MsG0380015564.01.T01 AT3G07960 30.488 164 114 0 180 343 45 208 2.68e-20 94.4
MsG0380015564.01.T01 AT3G07960 35.714 126 81 0 233 358 29 154 1.13e-17 86.3
MsG0380015564.01.T01 AT3G07960 29.252 147 104 0 175 321 63 209 6.66e-14 74.3
MsG0380015564.01.T01 AT3G07960 31.176 170 117 0 186 355 28 197 8.04e-22 99.0
MsG0380015564.01.T01 AT3G07960 30.488 164 114 0 180 343 45 208 2.68e-20 94.4
MsG0380015564.01.T01 AT3G07960 35.714 126 81 0 233 358 29 154 1.13e-17 86.3
MsG0380015564.01.T01 AT3G07960 29.252 147 104 0 175 321 63 209 6.66e-14 74.3
MsG0380015564.01.T01 AT3G07960 31.176 170 117 0 186 355 28 197 9.84e-22 98.6
MsG0380015564.01.T01 AT3G07960 30.488 164 114 0 180 343 45 208 2.90e-20 94.4
MsG0380015564.01.T01 AT3G07960 35.714 126 81 0 233 358 29 154 1.39e-17 85.9
MsG0380015564.01.T01 AT3G07960 29.252 147 104 0 175 321 63 209 7.68e-14 74.3
MsG0380015564.01.T01 AT3G09920 33.540 161 107 0 183 343 74 234 1.99e-21 98.2
MsG0380015564.01.T01 AT3G09920 30.102 196 135 1 163 358 33 226 1.85e-20 95.1
MsG0380015564.01.T01 AT3G09920 34.058 138 68 2 184 298 98 235 2.59e-14 75.9
MsG0380015564.01.T01 AT3G09920 32.031 128 87 0 233 360 55 182 3.16e-12 69.3
MsG0380015564.01.T01 AT3G09920 33.540 161 107 0 183 343 74 234 1.99e-21 98.2
MsG0380015564.01.T01 AT3G09920 30.102 196 135 1 163 358 33 226 1.85e-20 95.1
MsG0380015564.01.T01 AT3G09920 34.058 138 68 2 184 298 98 235 2.59e-14 75.9
MsG0380015564.01.T01 AT3G09920 32.031 128 87 0 233 360 55 182 3.16e-12 69.3
MsG0380015564.01.T01 AT3G09920 33.540 161 107 0 183 343 74 234 1.99e-21 98.2
MsG0380015564.01.T01 AT3G09920 30.102 196 135 1 163 358 33 226 1.85e-20 95.1
MsG0380015564.01.T01 AT3G09920 34.058 138 68 2 184 298 98 235 2.59e-14 75.9
MsG0380015564.01.T01 AT3G09920 32.031 128 87 0 233 360 55 182 3.16e-12 69.3
MsG0380015564.01.T01 AT3G09920 33.540 161 107 0 183 343 74 234 1.99e-21 98.2
MsG0380015564.01.T01 AT3G09920 30.102 196 135 1 163 358 33 226 1.85e-20 95.1
MsG0380015564.01.T01 AT3G09920 34.058 138 68 2 184 298 98 235 2.59e-14 75.9
MsG0380015564.01.T01 AT3G09920 32.031 128 87 0 233 360 55 182 3.16e-12 69.3

Find 122 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATGCAGGAGAGTATTT+TGG 0.219739 3:-71905737 MsG0380015564.01.T01:CDS
TTGGTTTACCTTGTTGATTT+TGG 0.241902 3:-71905498 MsG0380015564.01.T01:CDS
TATAGAATAGTTACCTAAAA+TGG 0.261359 3:+71906064 None:intergenic
GGAGACAAAATTCATGGATT+TGG 0.267311 3:-71905716 MsG0380015564.01.T01:CDS
AACAATGTCCATTAGCAAAA+TGG 0.295545 3:+71905687 None:intergenic
TGTTGTCCTTCGAGCGATTC+AGG 0.296526 3:-71905540 MsG0380015564.01.T01:CDS
AATCGGGTCGACCCGATTCT+TGG 0.312691 3:+71906771 None:intergenic
AGAAGAAGATCTCGCTAAAA+TGG 0.322473 3:-71906973 MsG0380015564.01.T01:exon
TCGACCCGATTCTTGGGGTT+TGG 0.334873 3:+71906778 None:intergenic
ATCGGGTCGACCCGATTCTT+GGG 0.347631 3:+71906772 None:intergenic
CCTGGTCTTCGACCCGCTTA+AGG 0.357225 3:+71905387 None:intergenic
GGCAAGAGGGAGTAGATATA+AGG 0.359773 3:-71906265 MsG0380015564.01.T01:CDS
CTGTGAAGGCTGTGCAGAAC+AGG 0.373688 3:-71905310 MsG0380015564.01.T01:CDS
AATGAAACAACGGCGATAAC+CGG 0.386769 3:+71906741 None:intergenic
GAAATTAACATAAAACGGTT+CGG 0.388198 3:-71906543 MsG0380015564.01.T01:CDS
GATGGAAGATATGATGGATA+TGG 0.390650 3:-71906300 MsG0380015564.01.T01:CDS
CCACCGCCGTGAAATGTTAC+CGG 0.395556 3:-71907028 MsG0380015564.01.T01:five_prime_UTR
AAATTAACATAAAACGGTTC+GGG 0.399543 3:-71906542 MsG0380015564.01.T01:CDS
TATGAAGGTGATTGGATTGA+TGG 0.415885 3:-71906318 MsG0380015564.01.T01:CDS
TTCTTCTACTTCTCCTTCCT+CGG 0.417596 3:-71906693 MsG0380015564.01.T01:CDS
GGCTCATATACCTTTCGAAA+TGG 0.422025 3:-71905626 MsG0380015564.01.T01:CDS
TACGAAGGGGAGTTTCATAA+AGG 0.423055 3:-71906387 MsG0380015564.01.T01:CDS
GCTAATGGACATTGTTATGA+AGG 0.423250 3:-71905680 MsG0380015564.01.T01:CDS
TTCCCGCCGGTAACATTTCA+CGG 0.424960 3:+71907022 None:intergenic
GAAGTGAAGGTTACAACAAA+AGG 0.431284 3:+71907213 None:intergenic
AAAATCCAAACCCCAAGAAT+CGG 0.432413 3:-71906783 MsG0380015564.01.T01:CDS
AAAATCACTACCATTGTAAA+GGG 0.435740 3:+71905475 None:intergenic
TATAAGGGTCAGTATAGAAA+AGG 0.443086 3:-71906249 MsG0380015564.01.T01:CDS
GGTGTTTATAGATTCTATAC+TGG 0.447788 3:-71906210 MsG0380015564.01.T01:CDS
GAGATCTTCTTCTCCGGTGC+CGG 0.450499 3:+71906983 None:intergenic
CAATGGTTCATCGGCGGTGG+TGG 0.451463 3:-71906492 MsG0380015564.01.T01:CDS
CGATAACCGGAGTGGTGAAT+CGG 0.452477 3:+71906754 None:intergenic
AGAAATGGAGATAGATATGC+AGG 0.453662 3:-71905749 MsG0380015564.01.T01:CDS
GTCGTAGTAACAATCGTTGA+TGG 0.454419 3:+71906848 None:intergenic
GAGAGAAAGTAGAGTTGAGT+TGG 0.454645 3:+71907181 None:intergenic
TGATTGTTATTAGTGATTGT+TGG 0.457222 3:-71905517 MsG0380015564.01.T01:CDS
ATCGATGAAGATCGAATTGT+TGG 0.460384 3:+71906885 None:intergenic
AGTAAGAGATTCTCTGAAGT+TGG 0.460846 3:+71906657 None:intergenic
TAATGGTCAAAGTCATGGTA+TGG 0.461256 3:-71906163 MsG0380015564.01.T01:CDS
GAAAATCACTACCATTGTAA+AGG 0.467538 3:+71905474 None:intergenic
GTTATCGCCGTTGTTTCATT+CGG 0.468432 3:-71906738 MsG0380015564.01.T01:CDS
GTGTATAATTACTTTGTGAA+TGG 0.470770 3:-71906345 MsG0380015564.01.T01:CDS
CGATCACTGCATTGTTAACC+TGG 0.471362 3:+71905369 None:intergenic
CAGAATCAAAACCGGTTCAA+TGG 0.472443 3:-71906509 MsG0380015564.01.T01:CDS
TTTCATAAAGGAAGAAGTAA+TGG 0.474793 3:-71906375 MsG0380015564.01.T01:CDS
GGTATGAAATTAACATAAAA+CGG 0.477986 3:-71906548 MsG0380015564.01.T01:CDS
CCTTAAGCGGGTCGAAGACC+AGG 0.484212 3:-71905387 MsG0380015564.01.T01:CDS
CATGGCGTTAAACATGGTCT+TGG 0.488314 3:-71906093 MsG0380015564.01.T01:CDS
AGCAACTCTAGCAGCAGTGG+CGG 0.488457 3:+71905334 None:intergenic
ATGGAAGATATGAAGGTGAT+TGG 0.490794 3:-71906326 MsG0380015564.01.T01:CDS
ACTTCATTTCAAAGAACAAA+GGG 0.491822 3:-71906605 MsG0380015564.01.T01:CDS
GAATTGAGAGTTGGGCAAGA+GGG 0.493085 3:-71906278 MsG0380015564.01.T01:CDS
AAATCCAAACCCCAAGAATC+GGG 0.494429 3:-71906782 MsG0380015564.01.T01:CDS
TGGATTGATGGAAGATATGA+TGG 0.495179 3:-71906306 MsG0380015564.01.T01:CDS
GCAAGAGGGAGTAGATATAA+GGG 0.496334 3:-71906264 MsG0380015564.01.T01:CDS
TGCTAGAGTTGCTGCTGTGA+AGG 0.498066 3:-71905324 MsG0380015564.01.T01:CDS
AAAGGAATGAGACATGGTTA+TGG 0.498172 3:-71906231 MsG0380015564.01.T01:CDS
GAAGAACGAACACGCGCCGA+GGG 0.498786 3:+71906713 None:intergenic
CCGCCGATGAACCATTGAAC+CGG 0.498983 3:+71906498 None:intergenic
GTTGTTTCATTCGGTTCCCT+CGG 0.502024 3:-71906729 MsG0380015564.01.T01:CDS
TTCATACCACTGCTTCAAAA+CGG 0.502724 3:+71906563 None:intergenic
AACAATCGTTGATGGAAGAA+AGG 0.503647 3:+71906856 None:intergenic
GTTCAATGGTTCATCGGCGG+TGG 0.504651 3:-71906495 MsG0380015564.01.T01:CDS
GATAACCGGAGTGGTGAATC+GGG 0.513550 3:+71906755 None:intergenic
AACGAAAACAGAATCAAAAC+CGG 0.514067 3:-71906517 MsG0380015564.01.T01:CDS
CATCGGCGGTGGTGGTTCAA+CGG 0.515767 3:-71906484 MsG0380015564.01.T01:CDS
TTGGTCGAAGTTAGAAGTGA+AGG 0.517880 3:+71907200 None:intergenic
TGGATATGGAATTGAGAGTT+GGG 0.521896 3:-71906286 MsG0380015564.01.T01:CDS
TTTGTGAATGGAAGATATGA+AGG 0.522163 3:-71906333 MsG0380015564.01.T01:CDS
CCGGTAACATTTCACGGCGG+TGG 0.522567 3:+71907028 None:intergenic
GAGGGTCGTAGACAAGGTAT+TGG 0.534830 3:-71905647 MsG0380015564.01.T01:CDS
TTTAGCGAGATCTTCTTCTC+CGG 0.536871 3:+71906977 None:intergenic
TCTCCGGTGCCGGAAAATTG+TGG 0.539205 3:+71906993 None:intergenic
TGATCGAAGATGTGGTGAAT+GGG 0.539469 3:-71905603 MsG0380015564.01.T01:CDS
GTGATCGAAGATGTGGTGAA+TGG 0.541320 3:-71905604 MsG0380015564.01.T01:CDS
ATGGATATGGAATTGAGAGT+TGG 0.547649 3:-71906287 MsG0380015564.01.T01:CDS
CGAAGGACAACATCAGTTAG+TGG 0.549802 3:+71905551 None:intergenic
TGCAGTGATCGCTGCAAACA+AGG 0.550468 3:-71905357 MsG0380015564.01.T01:CDS
TCTGATGCTAGTACTTATGT+TGG 0.553474 3:-71906126 MsG0380015564.01.T01:CDS
GGAATTGAGAGTTGGGCAAG+AGG 0.556320 3:-71906279 MsG0380015564.01.T01:CDS
CGCCGTGAAATGTTACCGGC+GGG 0.556800 3:-71907024 MsG0380015564.01.T01:five_prime_UTR
AAAGGAAGAAGTAATGGAAG+TGG 0.559344 3:-71906369 MsG0380015564.01.T01:CDS
TTTAAACATGGCGTTAAACA+TGG 0.562222 3:-71906099 MsG0380015564.01.T01:CDS
AACCTCGTCGCTACCGAGGA+AGG 0.563832 3:+71906680 None:intergenic
TACTTCATTTCAAAGAACAA+AGG 0.565022 3:-71906606 MsG0380015564.01.T01:CDS
TCGGGTCGACCCGATTCTTG+GGG 0.567274 3:+71906773 None:intergenic
ACATCAGTTAGTGGTGGCAT+AGG 0.567879 3:+71905560 None:intergenic
CTCCTTCCTCGGTAGCGACG+AGG 0.570441 3:-71906682 MsG0380015564.01.T01:CDS
AGCAGCAACTCTAGCAGCAG+TGG 0.572982 3:+71905331 None:intergenic
GCTGTGCAGAACAGGATGGA+TGG 0.573453 3:-71905302 MsG0380015564.01.T01:CDS
AGATGTGGTGAATGGGATGC+TGG 0.576182 3:-71905596 MsG0380015564.01.T01:CDS
AAACCGGTTCAATGGTTCAT+CGG 0.583941 3:-71906501 MsG0380015564.01.T01:CDS
TGGCATGAGGGTCGTAGACA+AGG 0.588271 3:-71905653 MsG0380015564.01.T01:CDS
TCAACTATTCCAAACCTGAA+CGG 0.591891 3:+71907078 None:intergenic
TTGGAACCTCGTCGCTACCG+AGG 0.592963 3:+71906676 None:intergenic
AGAAGAACGAACACGCGCCG+AGG 0.599348 3:+71906712 None:intergenic
TCTTCGATCACCATTTCGAA+AGG 0.600603 3:+71905616 None:intergenic
AGAATGCGATTAACCTTAAG+CGG 0.603928 3:-71905400 MsG0380015564.01.T01:CDS
TTATGAAGGAGCGTGGCATG+AGG 0.603970 3:-71905666 MsG0380015564.01.T01:CDS
AATGGTCAAAGTCATGGTAT+GGG 0.608151 3:-71906162 MsG0380015564.01.T01:CDS
TATGTTGGAATGTTTAAACA+TGG 0.618534 3:-71906111 MsG0380015564.01.T01:CDS
TATGAAGGAGCGTGGCATGA+GGG 0.620110 3:-71905665 MsG0380015564.01.T01:CDS
GACATTGTTATGAAGGAGCG+TGG 0.636952 3:-71905673 MsG0380015564.01.T01:CDS
GAATGCGATTAACCTTAAGC+GGG 0.636999 3:-71905399 MsG0380015564.01.T01:CDS
TGAAATGAAGTAAAGAGCAA+CGG 0.642079 3:+71906617 None:intergenic
TGGTGTAATGGTCAAAGTCA+TGG 0.649569 3:-71906168 MsG0380015564.01.T01:CDS
GAAGGCTGTGCAGAACAGGA+TGG 0.654276 3:-71905306 MsG0380015564.01.T01:CDS
CCGCCGTGAAATGTTACCGG+CGG 0.654659 3:-71907025 MsG0380015564.01.T01:five_prime_UTR
ATTGTGGTTATGTTTCCCGC+CGG 0.659050 3:+71907009 None:intergenic
CGAAATGGTGATCGAAGATG+TGG 0.665518 3:-71905611 MsG0380015564.01.T01:CDS
GAGGGAACCGAATGAAACAA+CGG 0.674149 3:+71906731 None:intergenic
CAATCACCTGAATCGCTCGA+AGG 0.674695 3:+71905534 None:intergenic
AACGGCAACAACAACTACAA+CGG 0.675675 3:-71906466 MsG0380015564.01.T01:CDS
GTGGTGGCATAGGATGCTTG+AGG 0.689393 3:+71905570 None:intergenic
AGGACAACATCAGTTAGTGG+TGG 0.692421 3:+71905554 None:intergenic
CCGGTTCAATGGTTCATCGG+CGG 0.692916 3:-71906498 MsG0380015564.01.T01:CDS
AGGTTACAACAAAAGGAGCG+TGG 0.693438 3:+71907220 None:intergenic
GTCGACCCGATTCACCACTC+CGG 0.693816 3:-71906760 MsG0380015564.01.T01:CDS
TATAGAAAAGGAATGAGACA+TGG 0.697371 3:-71906237 MsG0380015564.01.T01:CDS
GTAAAGGGCCAAAATCAACA+AGG 0.719307 3:+71905490 None:intergenic
AACAACGGCGATAACCGGAG+TGG 0.750268 3:+71906746 None:intergenic
CCGCCGGTAACATTTCACGG+CGG 0.797529 3:+71907025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCTTTCTTTTGTT+AGG + Chr3:71905354-71905373 None:intergenic 15.0%
!! GGTATGAAATTAACATAAAA+CGG - Chr3:71905947-71905966 MsG0380015564.01.T01:intron 20.0%
!! TATAGAATAGTTACCTAAAA+TGG + Chr3:71906434-71906453 None:intergenic 20.0%
!! TATTAGACTATGTTCATATT+CGG + Chr3:71906666-71906685 None:intergenic 20.0%
!!! AAACATGTTTTTCTAAGTTA+TGG - Chr3:71906708-71906727 MsG0380015564.01.T01:CDS 20.0%
!!! ATTTAGTCTTGTTTAATTGA+TGG - Chr3:71906509-71906528 MsG0380015564.01.T01:CDS 20.0%
! AAAATCACTACCATTGTAAA+GGG + Chr3:71907023-71907042 None:intergenic 25.0%
! AAATTAACATAAAACGGTTC+GGG - Chr3:71905953-71905972 MsG0380015564.01.T01:intron 25.0%
! ACTTCATTTCAAAGAACAAA+GGG - Chr3:71905890-71905909 MsG0380015564.01.T01:intron 25.0%
! GAAATTAACATAAAACGGTT+CGG - Chr3:71905952-71905971 MsG0380015564.01.T01:intron 25.0%
! GTGTATAATTACTTTGTGAA+TGG - Chr3:71906150-71906169 MsG0380015564.01.T01:CDS 25.0%
! TACTTCATTTCAAAGAACAA+AGG - Chr3:71905889-71905908 MsG0380015564.01.T01:intron 25.0%
! TATGAACATAGTCTAATAGA+TGG - Chr3:71906668-71906687 MsG0380015564.01.T01:CDS 25.0%
! TATGTTGGAATGTTTAAACA+TGG - Chr3:71906384-71906403 MsG0380015564.01.T01:CDS 25.0%
! TTTCATAAAGGAAGAAGTAA+TGG - Chr3:71906120-71906139 MsG0380015564.01.T01:CDS 25.0%
!! GAGGATATATAATGCATTTT+CGG - Chr3:71906580-71906599 MsG0380015564.01.T01:CDS 25.0%
!! TCTTTTGTTAGGAAAAGAAA+AGG + Chr3:71905343-71905362 None:intergenic 25.0%
!! TGATTGTTATTAGTGATTGT+TGG - Chr3:71906978-71906997 MsG0380015564.01.T01:five_prime_UTR 25.0%
!!! AATTGATGGTACTGTTTTAT+AGG - Chr3:71906523-71906542 MsG0380015564.01.T01:CDS 25.0%
!!! TATTTTGGAGACAAAATTCA+TGG - Chr3:71906773-71906792 MsG0380015564.01.T01:CDS 25.0%
AACAATGTCCATTAGCAAAA+TGG + Chr3:71906811-71906830 None:intergenic 30.0%
AACGAAAACAGAATCAAAAC+CGG - Chr3:71905978-71905997 MsG0380015564.01.T01:intron 30.0%
AGTGAAGTTTGTCAGAATTA+GGG - Chr3:71906609-71906628 MsG0380015564.01.T01:CDS 30.0%
GAAAATCACTACCATTGTAA+AGG + Chr3:71907024-71907043 None:intergenic 30.0%
GAAGAAAAAAAAAACCGTTC+AGG - Chr3:71905403-71905422 MsG0380015564.01.T01:CDS 30.0%
GCGAAAAAGAAGATAAAAGA+AGG - Chr3:71906057-71906076 MsG0380015564.01.T01:intron 30.0%
GGTGTTTATAGATTCTATAC+TGG - Chr3:71906285-71906304 MsG0380015564.01.T01:CDS 30.0%
TATAAGGGTCAGTATAGAAA+AGG - Chr3:71906246-71906265 MsG0380015564.01.T01:CDS 30.0%
TATAGAAAAGGAATGAGACA+TGG - Chr3:71906258-71906277 MsG0380015564.01.T01:CDS 30.0%
TGAAATGAAGTAAAGAGCAA+CGG + Chr3:71905881-71905900 None:intergenic 30.0%
TTTAAACATGGCGTTAAACA+TGG - Chr3:71906396-71906415 MsG0380015564.01.T01:CDS 30.0%
TTTGTGAATGGAAGATATGA+AGG - Chr3:71906162-71906181 MsG0380015564.01.T01:CDS 30.0%
! AAAAAAAAACCGTTCAGGTT+TGG - Chr3:71905408-71905427 MsG0380015564.01.T01:CDS 30.0%
! CATAGTCTAATAGATGGTTT+TGG - Chr3:71906674-71906693 MsG0380015564.01.T01:CDS 30.0%
! GAAACATAACCACAATTTTC+CGG - Chr3:71905493-71905512 MsG0380015564.01.T01:CDS 30.0%
! TATACTGGTGATTCTTTTTC+TGG - Chr3:71906300-71906319 MsG0380015564.01.T01:CDS 30.0%
! TCTAAGTTATGGTGTGTTTT+TGG - Chr3:71906719-71906738 MsG0380015564.01.T01:CDS 30.0%
!!! TGTGTTTTTGGTTGTAGAAA+TGG - Chr3:71906731-71906750 MsG0380015564.01.T01:CDS 30.0%
!!! TTGGTTTACCTTGTTGATTT+TGG - Chr3:71906997-71907016 MsG0380015564.01.T01:five_prime_UTR 30.0%
AAAATCCAAACCCCAAGAAT+CGG - Chr3:71905712-71905731 MsG0380015564.01.T01:CDS 35.0%
AAAGGAATGAGACATGGTTA+TGG - Chr3:71906264-71906283 MsG0380015564.01.T01:CDS 35.0%
AATGGTCAAAGTCATGGTAT+GGG - Chr3:71906333-71906352 MsG0380015564.01.T01:CDS 35.0%
AGAAATGGAGATAGATATGC+AGG - Chr3:71906746-71906765 MsG0380015564.01.T01:CDS 35.0%
AGAAGAAGATCTCGCTAAAA+TGG - Chr3:71905522-71905541 MsG0380015564.01.T01:CDS 35.0%
AGAATGCGATTAACCTTAAG+CGG - Chr3:71907095-71907114 MsG0380015564.01.T01:five_prime_UTR 35.0%
ATCGATGAAGATCGAATTGT+TGG + Chr3:71905613-71905632 None:intergenic 35.0%
ATGGAAGATATGAAGGTGAT+TGG - Chr3:71906169-71906188 MsG0380015564.01.T01:CDS 35.0%
ATGGATATGGAATTGAGAGT+TGG - Chr3:71906208-71906227 MsG0380015564.01.T01:CDS 35.0%
CAGTGAAGTTTGTCAGAATT+AGG - Chr3:71906608-71906627 MsG0380015564.01.T01:CDS 35.0%
GAAGTGAAGGTTACAACAAA+AGG + Chr3:71905285-71905304 None:intergenic 35.0%
GGAGACAAAATTCATGGATT+TGG - Chr3:71906779-71906798 MsG0380015564.01.T01:CDS 35.0%
TAATGGTCAAAGTCATGGTA+TGG - Chr3:71906332-71906351 MsG0380015564.01.T01:CDS 35.0%
TATGAAGGTGATTGGATTGA+TGG - Chr3:71906177-71906196 MsG0380015564.01.T01:CDS 35.0%
TCAACTATTCCAAACCTGAA+CGG + Chr3:71905420-71905439 None:intergenic 35.0%
TCTGATGCTAGTACTTATGT+TGG - Chr3:71906369-71906388 MsG0380015564.01.T01:CDS 35.0%
TGGATATGGAATTGAGAGTT+GGG - Chr3:71906209-71906228 MsG0380015564.01.T01:CDS 35.0%
TGGATTGATGGAAGATATGA+TGG - Chr3:71906189-71906208 MsG0380015564.01.T01:CDS 35.0%
TTCATACCACTGCTTCAAAA+CGG + Chr3:71905935-71905954 None:intergenic 35.0%
! AAAGGAAGAAGTAATGGAAG+TGG - Chr3:71906126-71906145 MsG0380015564.01.T01:CDS 35.0%
! AACAATCGTTGATGGAAGAA+AGG + Chr3:71905642-71905661 None:intergenic 35.0%
! GCTAATGGACATTGTTATGA+AGG - Chr3:71906815-71906834 MsG0380015564.01.T01:CDS 35.0%
! GTCTTGGTTGTTACCATTTT+AGG - Chr3:71906418-71906437 MsG0380015564.01.T01:CDS 35.0%
!! AGTAAGAGATTCTCTGAAGT+TGG + Chr3:71905841-71905860 None:intergenic 35.0%
!! GATGGAAGATATGATGGATA+TGG - Chr3:71906195-71906214 MsG0380015564.01.T01:CDS 35.0%
!! GTGATTCTTTTTCTGGTGAA+TGG - Chr3:71906307-71906326 MsG0380015564.01.T01:CDS 35.0%
!! GTGTGTGTATTTTAAACTGC+AGG - Chr3:71907054-71907073 MsG0380015564.01.T01:five_prime_UTR 35.0%
!! TTGATTTTGGCCCTTTACAA+TGG - Chr3:71907010-71907029 MsG0380015564.01.T01:five_prime_UTR 35.0%
!! TTTTCTGGTGAATGGTGTAA+TGG - Chr3:71906315-71906334 MsG0380015564.01.T01:CDS 35.0%
!!! AGATATGCAGGAGAGTATTT+TGG - Chr3:71906758-71906777 MsG0380015564.01.T01:CDS 35.0%
!!! GAGATGTTTTGTTTTATGCG+AGG - Chr3:71906561-71906580 MsG0380015564.01.T01:CDS 35.0%
!!! TGGGGTTTGGATTTTTTTCT+TGG + Chr3:71905707-71905726 None:intergenic 35.0%
AAATCCAAACCCCAAGAATC+GGG - Chr3:71905713-71905732 MsG0380015564.01.T01:CDS 40.0%
AACGGCAACAACAACTACAA+CGG - Chr3:71906029-71906048 MsG0380015564.01.T01:intron 40.0%
AATGAAACAACGGCGATAAC+CGG + Chr3:71905757-71905776 None:intergenic 40.0%
GAATGCGATTAACCTTAAGC+GGG - Chr3:71907096-71907115 MsG0380015564.01.T01:five_prime_UTR 40.0%
GAGAGAAAGTAGAGTTGAGT+TGG + Chr3:71905317-71905336 None:intergenic 40.0%
GCAAGAGGGAGTAGATATAA+GGG - Chr3:71906231-71906250 MsG0380015564.01.T01:CDS 40.0%
GGCTCATATACCTTTCGAAA+TGG - Chr3:71906869-71906888 MsG0380015564.01.T01:CDS 40.0%
GTAAAGGGCCAAAATCAACA+AGG + Chr3:71907008-71907027 None:intergenic 40.0%
GTCGTAGTAACAATCGTTGA+TGG + Chr3:71905650-71905669 None:intergenic 40.0%
TACGAAGGGGAGTTTCATAA+AGG - Chr3:71906108-71906127 MsG0380015564.01.T01:CDS 40.0%
TCTTCGATCACCATTTCGAA+AGG + Chr3:71906882-71906901 None:intergenic 40.0%
TGATCGAAGATGTGGTGAAT+GGG - Chr3:71906892-71906911 MsG0380015564.01.T01:CDS 40.0%
TGGTGTAATGGTCAAAGTCA+TGG - Chr3:71906327-71906346 MsG0380015564.01.T01:CDS 40.0%
TTCATATTCGGTATCACGCT+AGG + Chr3:71906654-71906673 None:intergenic 40.0%
TTCTTCTACTTCTCCTTCCT+CGG - Chr3:71905802-71905821 MsG0380015564.01.T01:intron 40.0%
TTGGTCGAAGTTAGAAGTGA+AGG + Chr3:71905298-71905317 None:intergenic 40.0%
TTTAGCGAGATCTTCTTCTC+CGG + Chr3:71905521-71905540 None:intergenic 40.0%
! AAACCGGTTCAATGGTTCAT+CGG - Chr3:71905994-71906013 MsG0380015564.01.T01:intron 40.0%
! AGCAACGGTGATTTTTACGA+AGG - Chr3:71906093-71906112 MsG0380015564.01.T01:CDS 40.0%
! ATTTTAAACTGCAGGCTGCT+AGG - Chr3:71907062-71907081 MsG0380015564.01.T01:five_prime_UTR 40.0%
! CAACGGTGATTTTTACGAAG+GGG - Chr3:71906095-71906114 MsG0380015564.01.T01:CDS 40.0%
! CAGAATCAAAACCGGTTCAA+TGG - Chr3:71905986-71906005 MsG0380015564.01.T01:intron 40.0%
! GCAACGGTGATTTTTACGAA+GGG - Chr3:71906094-71906113 MsG0380015564.01.T01:CDS 40.0%
! GGAGTGTACCATTTTGCTAA+TGG - Chr3:71906800-71906819 MsG0380015564.01.T01:CDS 40.0%
! GGTGTAGAGTTTTACAGCAA+CGG - Chr3:71906078-71906097 MsG0380015564.01.T01:CDS 40.0%
! GTTATCGCCGTTGTTTCATT+CGG - Chr3:71905757-71905776 MsG0380015564.01.T01:intron 40.0%
ACATCAGTTAGTGGTGGCAT+AGG + Chr3:71906938-71906957 None:intergenic 45.0%
AGGACAACATCAGTTAGTGG+TGG + Chr3:71906944-71906963 None:intergenic 45.0%
ATTGTGGTTATGTTTCCCGC+CGG + Chr3:71905489-71905508 None:intergenic 45.0%
CATGGCGTTAAACATGGTCT+TGG - Chr3:71906402-71906421 MsG0380015564.01.T01:CDS 45.0%
CGAAATGGTGATCGAAGATG+TGG - Chr3:71906884-71906903 MsG0380015564.01.T01:CDS 45.0%
CGAAGGACAACATCAGTTAG+TGG + Chr3:71906947-71906966 None:intergenic 45.0%
CGATCACTGCATTGTTAACC+TGG + Chr3:71907129-71907148 None:intergenic 45.0%
GAATTGAGAGTTGGGCAAGA+GGG - Chr3:71906217-71906236 MsG0380015564.01.T01:CDS 45.0%
GACATTGTTATGAAGGAGCG+TGG - Chr3:71906822-71906841 MsG0380015564.01.T01:CDS 45.0%
GAGGGAACCGAATGAAACAA+CGG + Chr3:71905767-71905786 None:intergenic 45.0%
GGCAAGAGGGAGTAGATATA+AGG - Chr3:71906230-71906249 MsG0380015564.01.T01:CDS 45.0%
GTGATCGAAGATGTGGTGAA+TGG - Chr3:71906891-71906910 MsG0380015564.01.T01:CDS 45.0%
! GTTGTTTCATTCGGTTCCCT+CGG - Chr3:71905766-71905785 MsG0380015564.01.T01:intron 45.0%
! TAACCACAATTTTCCGGCAC+CGG - Chr3:71905499-71905518 MsG0380015564.01.T01:CDS 45.0%
AGATGTGGTGAATGGGATGC+TGG - Chr3:71906899-71906918 MsG0380015564.01.T01:CDS 50.0%
CAATCACCTGAATCGCTCGA+AGG + Chr3:71906964-71906983 None:intergenic 50.0%
CGATAACCGGAGTGGTGAAT+CGG + Chr3:71905744-71905763 None:intergenic 50.0%
GAGGGTCGTAGACAAGGTAT+TGG - Chr3:71906848-71906867 MsG0380015564.01.T01:CDS 50.0%
GATAACCGGAGTGGTGAATC+GGG + Chr3:71905743-71905762 None:intergenic 50.0%
GGAATTGAGAGTTGGGCAAG+AGG - Chr3:71906216-71906235 MsG0380015564.01.T01:CDS 50.0%
TGCAGTGATCGCTGCAAACA+AGG - Chr3:71907138-71907157 MsG0380015564.01.T01:five_prime_UTR 50.0%
TGCTAGAGTTGCTGCTGTGA+AGG - Chr3:71907171-71907190 MsG0380015564.01.T01:five_prime_UTR 50.0%
TGTTGTCCTTCGAGCGATTC+AGG - Chr3:71906955-71906974 MsG0380015564.01.T01:CDS 50.0%
TTCCCGCCGGTAACATTTCA+CGG + Chr3:71905476-71905495 None:intergenic 50.0%
! TATGAAGGAGCGTGGCATGA+GGG - Chr3:71906830-71906849 MsG0380015564.01.T01:CDS 50.0%
! TTATGAAGGAGCGTGGCATG+AGG - Chr3:71906829-71906848 MsG0380015564.01.T01:CDS 50.0%
!!! GTGTCTCCGTTTTGAAGCAG+TGG - Chr3:71905926-71905945 MsG0380015564.01.T01:intron 50.0%
AACAACGGCGATAACCGGAG+TGG + Chr3:71905752-71905771 None:intergenic 55.0%
AATCGGGTCGACCCGATTCT+TGG + Chr3:71905727-71905746 None:intergenic 55.0%
AGCAACTCTAGCAGCAGTGG+CGG + Chr3:71907164-71907183 None:intergenic 55.0%
AGCAGCAACTCTAGCAGCAG+TGG + Chr3:71907167-71907186 None:intergenic 55.0%
ATCGGGTCGACCCGATTCTT+GGG + Chr3:71905726-71905745 None:intergenic 55.0%
CCACCGCCGTGAAATGTTAC+CGG - Chr3:71905467-71905486 MsG0380015564.01.T01:CDS 55.0%
CCGCCGATGAACCATTGAAC+CGG + Chr3:71906000-71906019 None:intergenic 55.0%
CCGGTTCAATGGTTCATCGG+CGG - Chr3:71905997-71906016 MsG0380015564.01.T01:intron 55.0%
CTGTGAAGGCTGTGCAGAAC+AGG - Chr3:71907185-71907204 MsG0380015564.01.T01:five_prime_UTR 55.0%
GAAGGCTGTGCAGAACAGGA+TGG - Chr3:71907189-71907208 MsG0380015564.01.T01:five_prime_UTR 55.0%
GAGATCTTCTTCTCCGGTGC+CGG + Chr3:71905515-71905534 None:intergenic 55.0%
GCTGTGCAGAACAGGATGGA+TGG - Chr3:71907193-71907212 MsG0380015564.01.T01:five_prime_UTR 55.0%
GTGGTGGCATAGGATGCTTG+AGG + Chr3:71906928-71906947 None:intergenic 55.0%
GTTCAATGGTTCATCGGCGG+TGG - Chr3:71906000-71906019 MsG0380015564.01.T01:intron 55.0%
TCGACCCGATTCTTGGGGTT+TGG + Chr3:71905720-71905739 None:intergenic 55.0%
TGGCATGAGGGTCGTAGACA+AGG - Chr3:71906842-71906861 MsG0380015564.01.T01:CDS 55.0%
! TCTCCGGTGCCGGAAAATTG+TGG + Chr3:71905505-71905524 None:intergenic 55.0%
AACCTCGTCGCTACCGAGGA+AGG + Chr3:71905818-71905837 None:intergenic 60.0%
AGAAGAACGAACACGCGCCG+AGG + Chr3:71905786-71905805 None:intergenic 60.0%
CAATGGTTCATCGGCGGTGG+TGG - Chr3:71906003-71906022 MsG0380015564.01.T01:intron 60.0%
CCGCCGGTAACATTTCACGG+CGG + Chr3:71905473-71905492 None:intergenic 60.0%
CCGCCGTGAAATGTTACCGG+CGG - Chr3:71905470-71905489 MsG0380015564.01.T01:CDS 60.0%
CCGGTAACATTTCACGGCGG+TGG + Chr3:71905470-71905489 None:intergenic 60.0%
CCTTAAGCGGGTCGAAGACC+AGG - Chr3:71907108-71907127 MsG0380015564.01.T01:five_prime_UTR 60.0%
CGCCGTGAAATGTTACCGGC+GGG - Chr3:71905471-71905490 MsG0380015564.01.T01:CDS 60.0%
GAAGAACGAACACGCGCCGA+GGG + Chr3:71905785-71905804 None:intergenic 60.0%
GTCGACCCGATTCACCACTC+CGG - Chr3:71905735-71905754 MsG0380015564.01.T01:CDS 60.0%
TCGGGTCGACCCGATTCTTG+GGG + Chr3:71905725-71905744 None:intergenic 60.0%
TTGGAACCTCGTCGCTACCG+AGG + Chr3:71905822-71905841 None:intergenic 60.0%
! CATCGGCGGTGGTGGTTCAA+CGG - Chr3:71906011-71906030 MsG0380015564.01.T01:intron 60.0%
! CCTGGTCTTCGACCCGCTTA+AGG + Chr3:71907111-71907130 None:intergenic 60.0%
CTCCTTCCTCGGTAGCGACG+AGG - Chr3:71905813-71905832 MsG0380015564.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 71905277 71907240 71905277 ID=MsG0380015564.01;Name=MsG0380015564.01
Chr3 mRNA 71905277 71907240 71905277 ID=MsG0380015564.01.T01;Parent=MsG0380015564.01;Name=MsG0380015564.01.T01;_AED=0.16;_eAED=0.16;_QI=264|1|0.5|1|1|1|2|0|463
Chr3 exon 71905277 71905769 71905277 ID=MsG0380015564.01.T01:exon:23891;Parent=MsG0380015564.01.T01
Chr3 exon 71906078 71907240 71906078 ID=MsG0380015564.01.T01:exon:23890;Parent=MsG0380015564.01.T01
Chr3 five_prime_UTR 71906977 71907240 71906977 ID=MsG0380015564.01.T01:five_prime_utr;Parent=MsG0380015564.01.T01
Chr3 CDS 71906078 71906976 71906078 ID=MsG0380015564.01.T01:cds;Parent=MsG0380015564.01.T01
Chr3 CDS 71905277 71905769 71905277 ID=MsG0380015564.01.T01:cds;Parent=MsG0380015564.01.T01
Gene Sequence

>MsG0380015564.01.T01

ATGGAAACTCAGAAGAGTCAATCAAAGCTTACAAGAACACAATCTTCACTTCTCAATCTCACTTCTTCACCAACAATTCGATCTTCATCGATTCAAAGCCTTTCTTCCATCAACGATTGTTACTACGACGAAGAAGACGACAAAAACAACAAGAAAATCAAAACCAAGAAAAAAATCCAAACCCCAAGAATCGGGTCGACCCGATTCACCACTCCGGTTATCGCCGTTGTTTCATTCGGTTCCCTCGGCGCGTGTTCGTTCTTCTTCTACTTCTCCTTCCTCGGTAGCGACGAGGTTCCAACTTCAGAGAATCTCTTACTCGCTTTGATTTTCATCGCCGTTGCTCTTTACTTCATTTCAAAGAACAAAGGGTTAATCAACTACAGTGTCTCCGTTTTGAAGCAGTGGTATGAAATTAACATAAAACGGTTCGGGTTAACGAAAACAGAATCAAAACCGGTTCAATGGTTCATCGGCGGTGGTGGTTCAACGGCAACAACAACTACAACGGCGATAGCGAAAAAGAAGATAAAAGAAGGTGTAGAGTTTTACAGCAACGGTGATTTTTACGAAGGGGAGTTTCATAAAGGAAGAAGTAATGGAAGTGGTGTGTATAATTACTTTGTGAATGGAAGATATGAAGGTGATTGGATTGATGGAAGATATGATGGATATGGAATTGAGAGTTGGGCAAGAGGGAGTAGATATAAGGGTCAGTATAGAAAAGGAATGAGACATGGTTATGGTGTTTATAGATTCTATACTGGTGATTCTTTTTCTGGTGAATGGTGTAATGGTCAAAGTCATGGTATGGGTCTTCAAACTTGTTCTGATGCTAGTACTTATGTTGGAATGTTTAAACATGGCGTTAAACATGGTCTTGGTTGTTACCATTTTAGAAATGGAGATAGATATGCAGGAGAGTATTTTGGAGACAAAATTCATGGATTTGGAGTGTACCATTTTGCTAATGGACATTGTTATGAAGGAGCGTGGCATGAGGGTCGTAGACAAGGTATTGGCTCATATACCTTTCGAAATGGTGATCGAAGATGTGGTGAATGGGATGCTGGCAACCTCAAGCATCCTATGCCACCACTAACTGATGTTGTCCTTCGAGCGATTCAGGTGATTGTTATTAGTGATTGTTGGTTTACCTTGTTGATTTTGGCCCTTTACAATGGTAGTGATTTTCTAATGCTTATGTGTGTGTATTTTAAACTGCAGGCTGCTAGGAAAACAGCTGAGAATGCGATTAACCTTAAGCGGGTCGAAGACCAGGTTAACAATGCAGTGATCGCTGCAAACAAGGCCGCCACTGCTGCTAGAGTTGCTGCTGTGAAGGCTGTGCAGAACAGGATGGATGGAAAATTTTGTGAAACTTTTGTATGA

Protein sequence

>MsG0380015564.01.T01

METQKSQSKLTRTQSSLLNLTSSPTIRSSSIQSLSSINDCYYDEEDDKNNKKIKTKKKIQTPRIGSTRFTTPVIAVVSFGSLGACSFFFYFSFLGSDEVPTSENLLLALIFIAVALYFISKNKGLINYSVSVLKQWYEINIKRFGLTKTESKPVQWFIGGGGSTATTTTTAIAKKKIKEGVEFYSNGDFYEGEFHKGRSNGSGVYNYFVNGRYEGDWIDGRYDGYGIESWARGSRYKGQYRKGMRHGYGVYRFYTGDSFSGEWCNGQSHGMGLQTCSDASTYVGMFKHGVKHGLGCYHFRNGDRYAGEYFGDKIHGFGVYHFANGHCYEGAWHEGRRQGIGSYTFRNGDRRCGEWDAGNLKHPMPPLTDVVLRAIQVIVISDCWFTLLILALYNGSDFLMLMCVYFKLQAARKTAENAINLKRVEDQVNNAVIAANKAATAARVAAVKAVQNRMDGKFCETFV*