AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006022.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006022.01.T01 MTR_1g112080 85.156 128 4 1 7 119 116 243 5.08e-74 220
MsG0180006022.01.T01 MTR_1g112080 81.818 66 9 1 7 69 116 181 3.53e-32 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATGGCAGTAAATTTAAT+TGG 0.237039 1:-98934252 MsG0180006022.01.T01:three_prime_UTR
ATATTGAATTGGCTGTTAAA+TGG 0.303433 1:-98936582 MsG0180006022.01.T01:CDS
CTTATAGATGTGTTCCTACT+TGG 0.325100 1:-98936630 MsG0180006022.01.T01:CDS
GCAATCTGTAACCAGATAAT+AGG 0.326793 1:+98934536 None:intergenic
TAGTCAATGAATCACTTCTT+TGG 0.328386 1:+98934690 None:intergenic
TTACTGCCATATAACTTTGC+AGG 0.331845 1:+98934262 None:intergenic
TTAATCTAGAACCTATTATC+TGG 0.346208 1:-98934547 MsG0180006022.01.T01:three_prime_UTR
ATGAATCACTTCTTTGGCTT+CGG 0.351012 1:+98934696 None:intergenic
TGTCTGGAAAACCATCAAAC+TGG 0.367415 1:+98934645 None:intergenic
GAGATGCCTGCAAAGTTATA+TGG 0.378395 1:-98934268 MsG0180006022.01.T01:three_prime_UTR
TGGTGGTTGGCCTTCTTCGC+CGG 0.404259 1:-98936733 None:intergenic
TCAACCTGGTGATATTGAAT+TGG 0.421228 1:-98936593 MsG0180006022.01.T01:CDS
CAAGTAGGAACACATCTATA+AGG 0.427274 1:+98936631 None:intergenic
CACTAGGTGTCACAGATGAT+TGG 0.449809 1:-98934821 MsG0180006022.01.T01:CDS
ATGCTCATATTATGAAAAGT+TGG 0.462906 1:-98934447 MsG0180006022.01.T01:three_prime_UTR
TATTGAATTGGCTGTTAAAT+GGG 0.466528 1:-98936581 MsG0180006022.01.T01:CDS
TCAATAATAGCAGGATCACC+CGG 0.471488 1:+98936700 None:intergenic
TAACTTGCAATCATTATCCA+TGG 0.494656 1:+98934391 None:intergenic
TTATAGATGTGTTCCTACTT+GGG 0.497653 1:-98936629 MsG0180006022.01.T01:CDS
GAGAGCATTCATGCGAATGT+AGG 0.504524 1:+98934764 None:intergenic
ATCGCAAGGCACTTGAAGAA+TGG 0.514773 1:-98934740 MsG0180006022.01.T01:CDS
CAAGTACAATCAATAATAGC+AGG 0.535238 1:+98936691 None:intergenic
CTTCGCCGGAAAAGATGCCC+CGG 0.540193 1:-98936719 MsG0180006022.01.T01:CDS
ATTCTTCAAGTGCCTTGCGA+TGG 0.543540 1:+98934742 None:intergenic
AGAGCATTCATGCGAATGTA+GGG 0.548827 1:+98934765 None:intergenic
GTCTGGAAAACCATCAAACT+GGG 0.576734 1:+98934646 None:intergenic
CCGAGGTTGAAAAGTTTGAG+TGG 0.583549 1:-98936661 MsG0180006022.01.T01:CDS
TTCGCCGGAAAAGATGCCCC+GGG 0.589047 1:-98936718 MsG0180006022.01.T01:CDS
AATTCAATATCACCAGGTTG+AGG 0.590249 1:+98936595 None:intergenic
ATTGTACTTGTGAGTTTCCG+AGG 0.596378 1:-98936678 MsG0180006022.01.T01:CDS
ACAGCCAATTCAATATCACC+AGG 0.601105 1:+98936589 None:intergenic
CATGAATGCTCTCCATCGCA+AGG 0.603132 1:-98934754 MsG0180006022.01.T01:CDS
AACTTGCAATCATTATCCAT+GGG 0.603454 1:+98934392 None:intergenic
ATTGCATAGTGTAATGCCCA+TGG 0.603994 1:-98934408 MsG0180006022.01.T01:three_prime_UTR
CAATAATAGCAGGATCACCC+GGG 0.604789 1:+98936701 None:intergenic
CAAGAATGCTAATAAAGTAG+AGG 0.605988 1:+98934578 None:intergenic
AGGTTGAAAAGTTTGAGTGG+TGG 0.609401 1:-98936658 MsG0180006022.01.T01:CDS
TGAGATTGTTTATGACACAA+TGG 0.622404 1:-98934292 MsG0180006022.01.T01:three_prime_UTR
ATGGGCATTACACTATGCAA+TGG 0.636503 1:+98934410 None:intergenic
GGAGATCTAGTATCCCAAGT+AGG 0.645762 1:+98936616 None:intergenic
GCTAATAAAGTAGAGGCACA+AGG 0.650620 1:+98934585 None:intergenic
GATACTAGATCTCCTCAACC+TGG 0.658121 1:-98936607 MsG0180006022.01.T01:CDS
CTATGCAATGGTCTCAACTG+TGG 0.658232 1:+98934422 None:intergenic
TGTGCACTGTTAGTTGCACT+AGG 0.661928 1:-98934837 MsG0180006022.01.T01:CDS
AATAATAGCAGGATCACCCG+GGG 0.731897 1:+98936702 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATGAAAATGAGTAAAA+AGG + Chr1:98935732-98935751 None:intergenic 15.0%
!!! AATATTGATTATTTTTACTC+CGG + Chr1:98934811-98934830 None:intergenic 15.0%
!! AAAACAAAACAAAATGATGT+TGG + Chr1:98936078-98936097 None:intergenic 20.0%
!! TACTACAATATTTCATTTCA+TGG + Chr1:98934510-98934529 None:intergenic 20.0%
!! TATATGGCAGTAAATTTAAT+TGG - Chr1:98936726-98936745 MsG0180006022.01.T01:CDS 20.0%
!!! ATTTCATTTTATGAGAGTAA+TGG - Chr1:98935135-98935154 MsG0180006022.01.T01:intron 20.0%
!!! TATTACAATTTTGCTAGTTT+TGG - Chr1:98935420-98935439 MsG0180006022.01.T01:intron 20.0%
!!! TTTCTATGTTGTTTGATAAA+GGG - Chr1:98935227-98935246 MsG0180006022.01.T01:intron 20.0%
!!! TTTTCTATGTTGTTTGATAA+AGG - Chr1:98935226-98935245 MsG0180006022.01.T01:intron 20.0%
! AAAAGCTGATAAAGCAAAAA+CGG - Chr1:98936190-98936209 MsG0180006022.01.T01:intron 25.0%
! AAACAACATAGAAAACTGTA+AGG + Chr1:98935221-98935240 None:intergenic 25.0%
! AACAACATAGAAAACTGTAA+GGG + Chr1:98935220-98935239 None:intergenic 25.0%
! AGTAAAATTCTTTCTTCCAA+TGG + Chr1:98935401-98935420 None:intergenic 25.0%
! AGTGATACTATTATATTCCT+AGG - Chr1:98935869-98935888 MsG0180006022.01.T01:intron 25.0%
! ATAAGCACAATGAACAAAAT+GGG + Chr1:98934449-98934468 None:intergenic 25.0%
! ATATTGAATTGGCTGTTAAA+TGG - Chr1:98934396-98934415 MsG0180006022.01.T01:three_prime_UTR 25.0%
! ATGCTCATATTATGAAAAGT+TGG - Chr1:98936531-98936550 MsG0180006022.01.T01:intron 25.0%
! TAATATAGTGAAACTCTCAT+TGG - Chr1:98935949-98935968 MsG0180006022.01.T01:intron 25.0%
! TATTGAATTGGCTGTTAAAT+GGG - Chr1:98934397-98934416 MsG0180006022.01.T01:three_prime_UTR 25.0%
! TGGTTATATCACATTCTTAT+AGG + Chr1:98936058-98936077 None:intergenic 25.0%
! TGTATGATATGAATAGACTA+GGG + Chr1:98935756-98935775 None:intergenic 25.0%
! TTGTATGTTTAATTCATCTC+TGG + Chr1:98935846-98935865 None:intergenic 25.0%
!! ACTTTTGTGTTCATTATCTT+CGG - Chr1:98935494-98935513 MsG0180006022.01.T01:intron 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG + Chr1:98935783-98935802 None:intergenic 25.0%
!! GTTCAAAACAACTTTAGAAA+AGG + Chr1:98934905-98934924 None:intergenic 25.0%
!! TGTAACTTGTAAGTTAAATG+TGG + Chr1:98935985-98936004 None:intergenic 25.0%
!! TTAATCTAGAACCTATTATC+TGG - Chr1:98936431-98936450 MsG0180006022.01.T01:intron 25.0%
!!! CTTTGGATTAGTGTATATAT+TGG + Chr1:98935002-98935021 None:intergenic 25.0%
AAAAGCCCATATTGTCAATT+AGG - Chr1:98935678-98935697 MsG0180006022.01.T01:intron 30.0%
AACTTGCAATCATTATCCAT+GGG + Chr1:98936589-98936608 None:intergenic 30.0%
ACAACATAGAAAACTGTAAG+GGG + Chr1:98935219-98935238 None:intergenic 30.0%
ACACATGCAATGAAAAAACT+GGG - Chr1:98935640-98935659 MsG0180006022.01.T01:intron 30.0%
ATCCTACCTAATTGACAATA+TGG + Chr1:98935687-98935706 None:intergenic 30.0%
ATGTTAACCAAAAGAAACCT+AGG + Chr1:98934779-98934798 None:intergenic 30.0%
CAAGAATGCTAATAAAGTAG+AGG + Chr1:98936403-98936422 None:intergenic 30.0%
CAAGTACAATCAATAATAGC+AGG + Chr1:98934290-98934309 None:intergenic 30.0%
CAGATAATTGAGATAACCAT+TGG - Chr1:98935382-98935401 MsG0180006022.01.T01:intron 30.0%
CATAAGCACAATGAACAAAA+TGG + Chr1:98934450-98934469 None:intergenic 30.0%
CCAAATTCTCCTATCTAAAT+TGG - Chr1:98935023-98935042 MsG0180006022.01.T01:intron 30.0%
CCAATTTAGATAGGAGAATT+TGG + Chr1:98935026-98935045 None:intergenic 30.0%
CCATGCTATCATATAATTGT+AGG + Chr1:98934853-98934872 None:intergenic 30.0%
CCTACAATTATATGATAGCA+TGG - Chr1:98934850-98934869 MsG0180006022.01.T01:CDS 30.0%
CTTTCACATAAATCAGAATG+TGG + Chr1:98935098-98935117 None:intergenic 30.0%
GATGTGTTGAAGTTGAAAAA+TGG - Chr1:98936507-98936526 MsG0180006022.01.T01:intron 30.0%
GTCTCAATTCCAATTTAGAT+AGG + Chr1:98935035-98935054 None:intergenic 30.0%
GTGTATGATATGAATAGACT+AGG + Chr1:98935757-98935776 None:intergenic 30.0%
TAAACACTTAAGACATGTGA+GGG + Chr1:98935326-98935345 None:intergenic 30.0%
TAAGTTAAATGTGGAGACAT+TGG + Chr1:98935976-98935995 None:intergenic 30.0%
TAGTCAATGAATCACTTCTT+TGG + Chr1:98936291-98936310 None:intergenic 30.0%
TCCTACCTAATTGACAATAT+GGG + Chr1:98935686-98935705 None:intergenic 30.0%
TGAGATTGTTTATGACACAA+TGG - Chr1:98936686-98936705 MsG0180006022.01.T01:CDS 30.0%
TGTTAACCAAAAGAAACCTA+GGG + Chr1:98934778-98934797 None:intergenic 30.0%
TTATAGATGTGTTCCTACTT+GGG - Chr1:98934349-98934368 MsG0180006022.01.T01:three_prime_UTR 30.0%
TTCTAAATTTGTGCTTGTCA+AGG - Chr1:98934926-98934945 MsG0180006022.01.T01:intron 30.0%
TTGTTAGTATGAATGGAACT+AGG - Chr1:98934630-98934649 MsG0180006022.01.T01:three_prime_UTR 30.0%
! ATCAACAACACTGTTTGTTT+TGG - Chr1:98935461-98935480 MsG0180006022.01.T01:intron 30.0%
! ATTGCATGTGTGTTATTCTA+AGG + Chr1:98935631-98935650 None:intergenic 30.0%
! CATTTTGTTCATTGTGCTTA+TGG - Chr1:98934448-98934467 MsG0180006022.01.T01:three_prime_UTR 30.0%
! CTCAAGTTTTTCTTTGCATA+AGG - Chr1:98936645-98936664 MsG0180006022.01.T01:CDS 30.0%
! GTTTTCCAGACAATACTTAA+TGG - Chr1:98936344-98936363 MsG0180006022.01.T01:intron 30.0%
! TAACTTGCAATCATTATCCA+TGG + Chr1:98936590-98936609 None:intergenic 30.0%
! TGTAGGTTGAAAATGTTACA+AGG + Chr1:98934836-98934855 None:intergenic 30.0%
!! ATTATCTGTTGTTTCCTTGA+AGG + Chr1:98935370-98935389 None:intergenic 30.0%
!! CTTTAGAAAAGGCATTTGTT+TGG + Chr1:98934894-98934913 None:intergenic 30.0%
!! TATTTTTACTCCGGTGTATA+TGG + Chr1:98934802-98934821 None:intergenic 30.0%
!! TTTTGCCATTAAGTATTGTC+TGG + Chr1:98936352-98936371 None:intergenic 30.0%
AATTCAATATCACCAGGTTG+AGG + Chr1:98934386-98934405 None:intergenic 35.0%
AGAATGTGGTCACAAACTAA+TGG + Chr1:98935084-98935103 None:intergenic 35.0%
AGATAGGAGAATTTGGACTT+TGG + Chr1:98935019-98935038 None:intergenic 35.0%
CAAGTAGGAACACATCTATA+AGG + Chr1:98934350-98934369 None:intergenic 35.0%
CACACATGCAATGAAAAAAC+TGG - Chr1:98935639-98935658 MsG0180006022.01.T01:intron 35.0%
CATGACCTTTACACAAGAAA+GGG + Chr1:98936101-98936120 None:intergenic 35.0%
CTAAACACTTAAGACATGTG+AGG + Chr1:98935327-98935346 None:intergenic 35.0%
CTTATAGATGTGTTCCTACT+TGG - Chr1:98934348-98934367 MsG0180006022.01.T01:three_prime_UTR 35.0%
GCAATCTGTAACCAGATAAT+AGG + Chr1:98936445-98936464 None:intergenic 35.0%
TAAGTTCAAGGTTCAAATCC+TGG + Chr1:98934750-98934769 None:intergenic 35.0%
TATAGGCAAGCATAATAGTC+TGG + Chr1:98936041-98936060 None:intergenic 35.0%
TATTCATATCATACACCCTC+CGG - Chr1:98935761-98935780 MsG0180006022.01.T01:intron 35.0%
TCAACCTGGTGATATTGAAT+TGG - Chr1:98934385-98934404 MsG0180006022.01.T01:three_prime_UTR 35.0%
TCTAAATTGGAATTGAGACG+AGG - Chr1:98935036-98935055 MsG0180006022.01.T01:intron 35.0%
TGCAAAGAAAAACTTGAGCT+TGG + Chr1:98936643-98936662 None:intergenic 35.0%
TGCTTGTCAAGGAAAAACTT+TGG - Chr1:98934937-98934956 MsG0180006022.01.T01:intron 35.0%
TGGTTAACATCCATATACAC+CGG - Chr1:98934789-98934808 MsG0180006022.01.T01:CDS 35.0%
TTACTGCCATATAACTTTGC+AGG + Chr1:98936719-98936738 None:intergenic 35.0%
TTGATGCCAATAGTGTACAA+CGG + Chr1:98935446-98935465 None:intergenic 35.0%
! AAAACTCCCTAGGTTTCTTT+TGG - Chr1:98934769-98934788 MsG0180006022.01.T01:CDS 35.0%
! ATGAATCACTTCTTTGGCTT+CGG + Chr1:98936285-98936304 None:intergenic 35.0%
! ATGTTGTTTGATAAAGGGAG+CGG - Chr1:98935232-98935251 MsG0180006022.01.T01:intron 35.0%
! CCACTAGTTTATTACCATCA+AGG + Chr1:98934714-98934733 None:intergenic 35.0%
! CCTTGATGGTAATAAACTAG+TGG - Chr1:98934711-98934730 MsG0180006022.01.T01:CDS 35.0%
! CTGTTGTTTGTAAACTCTGA+AGG + Chr1:98934657-98934676 None:intergenic 35.0%
! GGTTCTTTTCTCTCTTTAGT+TGG + Chr1:98935305-98935324 None:intergenic 35.0%
! GTGGTTGTTGTTAGTATGAA+TGG - Chr1:98934623-98934642 MsG0180006022.01.T01:three_prime_UTR 35.0%
! GTTTTCCCTTTCTTGTGTAA+AGG - Chr1:98936093-98936112 MsG0180006022.01.T01:intron 35.0%
! TTTTGTCAATCCCAGTTTGA+TGG - Chr1:98936322-98936341 MsG0180006022.01.T01:intron 35.0%
!!! AGTGGTTATGTTAGTTTTCC+AGG - Chr1:98934729-98934748 MsG0180006022.01.T01:CDS 35.0%
ACAGCCAATTCAATATCACC+AGG + Chr1:98934392-98934411 None:intergenic 40.0%
AGGTTGAAAAGTTTGAGTGG+TGG - Chr1:98934320-98934339 MsG0180006022.01.T01:three_prime_UTR 40.0%
ATAAAGGGAGCGGTGATAAA+GGG - Chr1:98935242-98935261 MsG0180006022.01.T01:intron 40.0%
ATGGGCATTACACTATGCAA+TGG + Chr1:98936571-98936590 None:intergenic 40.0%
ATTGCATAGTGTAATGCCCA+TGG - Chr1:98936570-98936589 MsG0180006022.01.T01:intron 40.0%
ATTGTACTTGTGAGTTTCCG+AGG - Chr1:98934300-98934319 MsG0180006022.01.T01:three_prime_UTR 40.0%
CCATGACCTTTACACAAGAA+AGG + Chr1:98936102-98936121 None:intergenic 40.0%
CCTTGAACTTAAAACTCCCT+AGG - Chr1:98934759-98934778 MsG0180006022.01.T01:CDS 40.0%
CCTTTCTTGTGTAAAGGTCA+TGG - Chr1:98936099-98936118 MsG0180006022.01.T01:intron 40.0%
GAGATGCCTGCAAAGTTATA+TGG - Chr1:98936710-98936729 MsG0180006022.01.T01:CDS 40.0%
GATAAAGGGAAATGTTGGAC+AGG - Chr1:98935256-98935275 MsG0180006022.01.T01:intron 40.0%
GCCCATATTGTCAATTAGGT+AGG - Chr1:98935682-98935701 MsG0180006022.01.T01:intron 40.0%
GTCTGGAAAACCATCAAACT+GGG + Chr1:98936335-98936354 None:intergenic 40.0%
TCAATAATAGCAGGATCACC+CGG + Chr1:98934281-98934300 None:intergenic 40.0%
TCTGCACGTGAGATAATAGA+AGG - Chr1:98935193-98935212 MsG0180006022.01.T01:intron 40.0%
TGCTAAACACCCAGTAAACA+GGG + Chr1:98935543-98935562 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr1:98935779-98935798 None:intergenic 40.0%
TGTCTGGAAAACCATCAAAC+TGG + Chr1:98936336-98936355 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr1:98935780-98935799 None:intergenic 40.0%
TTTGTACTGTGAGTCCTTCA+AGG - Chr1:98935353-98935372 MsG0180006022.01.T01:intron 40.0%
! AGAGCATTCATGCGAATGTA+GGG + Chr1:98936216-98936235 None:intergenic 40.0%
! CCACTCAAACTTTTCAACCT+CGG + Chr1:98934320-98934339 None:intergenic 40.0%
! GCTAATAAAGTAGAGGCACA+AGG + Chr1:98936396-98936415 None:intergenic 40.0%
! TTTTGGCCGTTGTACACTAT+TGG - Chr1:98935437-98935456 MsG0180006022.01.T01:intron 40.0%
!! GAAAAGGCATTTGTTTGGAC+AGG + Chr1:98934889-98934908 None:intergenic 40.0%
!!! CCTAGGGAGTTTTAAGTTCA+AGG + Chr1:98934762-98934781 None:intergenic 40.0%
AATAATAGCAGGATCACCCG+GGG + Chr1:98934279-98934298 None:intergenic 45.0%
ATATTCCTAGGTCCCTGCAT+AGG - Chr1:98935881-98935900 MsG0180006022.01.T01:intron 45.0%
ATTCTTCAAGTGCCTTGCGA+TGG + Chr1:98936239-98936258 None:intergenic 45.0%
CAAGGTCCAGCATAAGTCAT+TGG + Chr1:98934696-98934715 None:intergenic 45.0%
CAATAATAGCAGGATCACCC+GGG + Chr1:98934280-98934299 None:intergenic 45.0%
CCACTTAGTGGAATAAGGCT+CGG - Chr1:98934601-98934620 MsG0180006022.01.T01:three_prime_UTR 45.0%
CCGAGGTTGAAAAGTTTGAG+TGG - Chr1:98934317-98934336 MsG0180006022.01.T01:three_prime_UTR 45.0%
CTATGCAATGGTCTCAACTG+TGG + Chr1:98936559-98936578 None:intergenic 45.0%
GATAAAGGGAGCGGTGATAA+AGG - Chr1:98935241-98935260 MsG0180006022.01.T01:intron 45.0%
GATACTAGATCTCCTCAACC+TGG - Chr1:98934371-98934390 MsG0180006022.01.T01:three_prime_UTR 45.0%
GCGGTGATAAAGGGAAATGT+TGG - Chr1:98935251-98935270 MsG0180006022.01.T01:intron 45.0%
GGAGATCTAGTATCCCAAGT+AGG + Chr1:98934365-98934384 None:intergenic 45.0%
GTGCTAAACACCCAGTAAAC+AGG + Chr1:98935544-98935563 None:intergenic 45.0%
TAAATGGGCGCTTCGTAAGA+GGG - Chr1:98934412-98934431 MsG0180006022.01.T01:three_prime_UTR 45.0%
TGACCCCACTTAGTGGAATA+AGG - Chr1:98934596-98934615 MsG0180006022.01.T01:three_prime_UTR 45.0%
TGACTTATGCTGGACCTTGA+TGG - Chr1:98934697-98934716 MsG0180006022.01.T01:exon 45.0%
TGCACACCAATGACTTATGC+TGG - Chr1:98934687-98934706 MsG0180006022.01.T01:exon 45.0%
TGTGCACTGTTAGTTGCACT+AGG - Chr1:98936141-98936160 MsG0180006022.01.T01:intron 45.0%
TTAAATGGGCGCTTCGTAAG+AGG - Chr1:98934411-98934430 MsG0180006022.01.T01:three_prime_UTR 45.0%
! ATCGCAAGGCACTTGAAGAA+TGG - Chr1:98936238-98936257 MsG0180006022.01.T01:intron 45.0%
! CACTAGGTGTCACAGATGAT+TGG - Chr1:98936157-98936176 MsG0180006022.01.T01:intron 45.0%
!! CGAGCCTTATTCCACTAAGT+GGG + Chr1:98934603-98934622 None:intergenic 45.0%
!! GAGAGCATTCATGCGAATGT+AGG + Chr1:98936217-98936236 None:intergenic 45.0%
!! GAGCCTTATTCCACTAAGTG+GGG + Chr1:98934602-98934621 None:intergenic 45.0%
AACTCCTCGCCCTGTTTACT+GGG - Chr1:98935531-98935550 MsG0180006022.01.T01:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + Chr1:98934590-98934609 None:intergenic 50.0%
ATCAGTGCACATGCCTATGC+AGG + Chr1:98935897-98935916 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - Chr1:98934589-98934608 MsG0180006022.01.T01:three_prime_UTR 50.0%
CATGAATGCTCTCCATCGCA+AGG - Chr1:98936224-98936243 MsG0180006022.01.T01:intron 50.0%
CTTAGTGGAATAAGGCTCGG+TGG - Chr1:98934604-98934623 MsG0180006022.01.T01:three_prime_UTR 50.0%
TCAGTGCACATGCCTATGCA+GGG + Chr1:98935896-98935915 None:intergenic 50.0%
!! CCGAGCCTTATTCCACTAAG+TGG + Chr1:98934604-98934623 None:intergenic 50.0%
AACACCCAGTAAACAGGGCG+AGG + Chr1:98935538-98935557 None:intergenic 55.0%
ACATGCCTATGCAGGGACCT+AGG + Chr1:98935889-98935908 None:intergenic 55.0%
GAACTCCTCGCCCTGTTTAC+TGG - Chr1:98935530-98935549 MsG0180006022.01.T01:intron 55.0%
! GGCATCTTTTCCGGCGAAGA+AGG + Chr1:98934258-98934277 None:intergenic 55.0%
!! ATCACCCGGGGCATCTTTTC+CGG + Chr1:98934267-98934286 None:intergenic 55.0%
CTTCGCCGGAAAAGATGCCC+CGG - Chr1:98934259-98934278 MsG0180006022.01.T01:three_prime_UTR 60.0%
TTCGCCGGAAAAGATGCCCC+GGG - Chr1:98934260-98934279 MsG0180006022.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98934251 98936749 98934251 ID=MsG0180006022.01;Name=MsG0180006022.01
Chr1 mRNA 98934251 98936749 98934251 ID=MsG0180006022.01.T01;Parent=MsG0180006022.01;Name=MsG0180006022.01.T01;_AED=0.38;_eAED=0.39;_QI=0|0|0.5|1|1|1|2|450|119
Chr1 exon 98934251 98934885 98934251 ID=MsG0180006022.01.T01:exon:11018;Parent=MsG0180006022.01.T01
Chr1 exon 98936575 98936749 98936575 ID=MsG0180006022.01.T01:exon:11017;Parent=MsG0180006022.01.T01
Chr1 CDS 98936575 98936749 98936575 ID=MsG0180006022.01.T01:cds;Parent=MsG0180006022.01.T01
Chr1 CDS 98934701 98934885 98934701 ID=MsG0180006022.01.T01:cds;Parent=MsG0180006022.01.T01
Chr1 three_prime_UTR 98934251 98934700 98934251 ID=MsG0180006022.01.T01:three_prime_utr;Parent=MsG0180006022.01.T01
Gene Sequence

>MsG0180006022.01.T01

TTGGCCTTCTTCGCCGGAAAAGATGCCCCGGGTGATCCTGCTATTATTGATTGTACTTGTGAGTTTCCGAGGTTGAAAAGTTTGAGTGGTGGTTTGCCTTATAGATGTGTTCCTACTTGGGATACTAGATCTCCTCAACCTGGTGATATTGAATTGGCTGTTAAATGGGCGCTTCGTCATGGAAGAAGTGTTGCTGTGATGTGTGCACTGTTAGTTGCACTAGGTGTCACAGATGATTGGAAAAATGCTGAAAAGCTGATAAAGCAAAAACGGCCCTACATTCGCATGAATGCTCTCCATCGCAAGGCACTTGAAGAATGGTCAGCGCATCGATTGTCTACGCCGAAGCCAAAGAAGTGA
Protein sequence

>MsG0180006022.01.T01

LAFFAGKDAPGDPAIIDCTCEFPRLKSLSGGLPYRCVPTWDTRSPQPGDIELAVKWALRHGRSVAVMCALLVALGVTDDWKNAEKLIKQKRPYIRMNALHRKALEEWSAHRLSTPKPKK*