AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004739.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004739.01.T01 MTR_1g085560 96.813 251 8 0 1 251 1 251 0.0 503
MsG0180004739.01.T01 MTR_7g110980 69.650 257 71 5 1 251 6 261 3.99e-118 338
MsG0180004739.01.T01 MTR_1g117010 64.677 201 63 3 52 249 48 243 3.01e-88 262
MsG0180004739.01.T01 MTR_1g117010 64.677 201 63 3 52 249 48 243 3.01e-88 262
MsG0180004739.01.T01 MTR_3g463900 65.027 183 55 2 74 249 23 203 1.13e-77 233
MsG0180004739.01.T01 MTR_3g070500 63.842 177 54 3 78 247 58 231 1.46e-72 221
MsG0180004739.01.T01 MTR_7g116340 67.808 146 40 1 86 224 5 150 6.47e-69 210
MsG0180004739.01.T01 MTR_4g075290 65.101 149 45 1 83 224 2 150 1.45e-68 209
MsG0180004739.01.T01 MTR_3g117750 66.438 146 42 1 86 224 13 158 5.57e-67 206
MsG0180004739.01.T01 MTR_8g040180 58.084 167 63 3 87 247 20 185 5.10e-62 193
MsG0180004739.01.T01 MTR_7g095750 59.763 169 58 2 87 247 9 175 3.18e-61 204
MsG0180004739.01.T01 MTR_4g073650 52.604 192 79 3 68 248 25 215 4.80e-61 192
MsG0180004739.01.T01 MTR_4g086760 56.977 172 65 2 85 248 4 174 2.70e-60 194
MsG0180004739.01.T01 MTR_4g086760 56.977 172 65 2 85 248 4 174 3.16e-60 192
MsG0180004739.01.T01 MTR_4g086760 56.977 172 65 2 85 248 4 174 4.01e-60 193
MsG0180004739.01.T01 MTR_8g079690 57.647 170 63 2 86 247 5 173 4.04e-60 194
MsG0180004739.01.T01 MTR_3g070500 68.939 132 33 2 78 202 58 188 3.42e-57 181
MsG0180004739.01.T01 MTR_3g070500 68.224 107 26 2 78 177 58 163 2.76e-42 142
MsG0180004739.01.T01 MTR_3g070500 67.925 106 26 2 78 176 58 162 8.64e-42 140
MsG0180004739.01.T01 MTR_1g011980 46.409 181 86 3 79 251 1 178 1.76e-41 151
MsG0180004739.01.T01 MTR_2g085075 43.850 187 98 6 58 243 431 611 1.34e-40 147
MsG0180004739.01.T01 MTR_3g107660 47.399 173 81 2 87 251 12 182 2.65e-40 148
MsG0180004739.01.T01 MTR_7g105220 49.664 149 69 5 97 244 17 160 1.35e-39 135
MsG0180004739.01.T01 MTR_3g085705 61.290 93 32 2 137 229 32 120 1.85e-34 120
MsG0180004739.01.T01 MTR_8g036015 50.345 145 64 5 99 241 10 148 9.00e-33 117
MsG0180004739.01.T01 MTR_5g015500 47.222 144 70 5 99 241 314 452 1.77e-29 116
MsG0180004739.01.T01 MTR_5g015500 47.222 144 70 5 99 241 354 492 2.76e-29 115
MsG0180004739.01.T01 MTR_2g023120 44.872 156 74 8 92 242 15 163 1.28e-21 94.0
MsG0180004739.01.T01 MTR_6g084140 37.500 168 83 9 97 250 8 167 2.67e-16 78.2
MsG0180004739.01.T01 MTR_6g084140 37.500 168 83 9 97 250 25 184 2.78e-16 78.2
MsG0180004739.01.T01 MTR_8g442420 36.905 168 84 9 97 250 8 167 3.73e-15 75.1
MsG0180004739.01.T01 MTR_2g461260 27.094 203 107 8 71 234 44 244 2.10e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004739.01.T01 AT3G62030 62.121 264 80 7 1 250 1 258 7.43e-106 307
MsG0180004739.01.T01 AT3G62030 61.887 265 80 7 1 250 1 259 1.07e-105 306
MsG0180004739.01.T01 AT3G62030 70.370 216 55 4 42 251 101 313 1.04e-104 306
MsG0180004739.01.T01 AT5G13120 64.615 195 61 3 62 249 59 252 6.93e-87 259
MsG0180004739.01.T01 AT5G13120 64.615 195 61 3 62 249 63 256 8.71e-87 258
MsG0180004739.01.T01 AT2G29960 65.405 185 50 3 77 249 19 201 7.38e-77 231
MsG0180004739.01.T01 AT2G29960 65.405 185 50 3 77 249 19 201 7.38e-77 231
MsG0180004739.01.T01 AT5G58710 66.286 175 50 2 82 249 32 204 5.68e-76 229
MsG0180004739.01.T01 AT3G55920 58.462 195 71 3 62 249 37 228 1.04e-71 219
MsG0180004739.01.T01 AT2G21130 62.722 169 54 2 86 247 6 172 2.11e-71 216
MsG0180004739.01.T01 AT3G56070 62.722 169 54 2 86 247 5 171 5.89e-70 213
MsG0180004739.01.T01 AT3G56070 62.722 169 54 2 86 247 5 171 5.89e-70 213
MsG0180004739.01.T01 AT4G38740 60.947 169 57 2 86 247 5 171 2.96e-69 211
MsG0180004739.01.T01 AT2G16600 66.438 146 42 1 86 224 6 151 1.36e-68 209
MsG0180004739.01.T01 AT2G29960 60.428 187 50 4 75 249 17 191 8.57e-68 208
MsG0180004739.01.T01 AT4G34870 57.396 169 63 2 86 247 5 171 1.34e-62 194
MsG0180004739.01.T01 AT3G63400 57.955 176 64 2 79 246 1 174 2.06e-61 198
MsG0180004739.01.T01 AT2G38730 57.485 167 64 3 87 247 34 199 4.70e-61 191
MsG0180004739.01.T01 AT4G34960 55.682 176 70 2 82 250 44 218 1.73e-60 190
MsG0180004739.01.T01 AT3G63400 57.955 176 64 2 79 246 1 174 8.03e-60 198
MsG0180004739.01.T01 AT3G63400 57.955 176 64 2 79 246 1 174 8.03e-60 198
MsG0180004739.01.T01 AT3G63400 57.955 176 64 2 79 246 1 174 8.03e-60 198
MsG0180004739.01.T01 AT2G15790 58.721 172 62 2 85 248 4 174 1.06e-59 193
MsG0180004739.01.T01 AT2G16600 61.871 139 38 1 86 224 6 129 2.57e-58 182
MsG0180004739.01.T01 AT4G34960 60.156 128 44 1 82 202 44 171 1.30e-47 155
MsG0180004739.01.T01 AT3G44600 44.920 187 96 6 58 243 445 625 3.45e-41 149
MsG0180004739.01.T01 AT2G36130 48.993 149 70 5 97 244 17 160 3.49e-39 134
MsG0180004739.01.T01 AT3G22920 43.605 172 80 5 85 247 4 167 2.11e-35 126
MsG0180004739.01.T01 AT4G32420 44.318 176 88 2 79 246 1 174 3.72e-35 133
MsG0180004739.01.T01 AT4G32420 44.318 176 88 2 79 246 1 174 3.72e-35 133
MsG0180004739.01.T01 AT4G32420 44.318 176 88 2 79 246 1 174 3.72e-35 133
MsG0180004739.01.T01 AT4G32420 44.318 176 88 2 79 246 1 174 3.72e-35 133
MsG0180004739.01.T01 AT4G32420 47.403 154 73 1 79 224 1 154 4.89e-34 130
MsG0180004739.01.T01 AT1G01940 51.515 132 57 4 99 228 10 136 1.36e-32 117
MsG0180004739.01.T01 AT5G67530 44.898 147 75 5 99 244 353 494 1.74e-29 116
MsG0180004739.01.T01 AT4G33060 48.800 125 56 5 92 213 15 134 7.75e-26 105
MsG0180004739.01.T01 AT1G53720 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
MsG0180004739.01.T01 AT1G53720 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
MsG0180004739.01.T01 AT3G66654 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
MsG0180004739.01.T01 AT3G66654 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
MsG0180004739.01.T01 AT3G66654 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
MsG0180004739.01.T01 AT3G66654 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
MsG0180004739.01.T01 AT3G66654 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
MsG0180004739.01.T01 AT2G47320 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 1:+81966759 MsG0180004739.01.T01:CDS
AGGATTGTTATTGGCCTATT+TGG 0.177067 1:+81967541 MsG0180004739.01.T01:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 1:+81967766 MsG0180004739.01.T01:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 1:+81969253 MsG0180004739.01.T01:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 1:-81967575 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 1:-81968198 None:intergenic
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 1:+81967532 MsG0180004739.01.T01:CDS
GAAAACCTTGCTTGTTACTT+TGG 0.335769 1:-81967485 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 1:+81967260 MsG0180004739.01.T01:CDS
TGGGAACAACATCTCCAAAT+AGG 0.365016 1:-81967555 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 1:+81967919 MsG0180004739.01.T01:CDS
AAGCGAAATCAATCACTTCT+CGG 0.414942 1:+81967298 MsG0180004739.01.T01:CDS
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 1:+81966776 MsG0180004739.01.T01:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 1:+81967716 MsG0180004739.01.T01:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 1:+81969373 MsG0180004739.01.T01:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 1:+81967505 MsG0180004739.01.T01:CDS
ATCAAAGATTTCATGATTCA+GGG 0.450983 1:+81967767 MsG0180004739.01.T01:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 1:+81969268 MsG0180004739.01.T01:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 1:+81966734 MsG0180004739.01.T01:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 1:+81967772 MsG0180004739.01.T01:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 1:+81967710 MsG0180004739.01.T01:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 1:+81967234 MsG0180004739.01.T01:CDS
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 1:+81967589 MsG0180004739.01.T01:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 1:+81968150 MsG0180004739.01.T01:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 1:-81967220 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 1:+81969355 MsG0180004739.01.T01:CDS
TTTAATTGGATGCAGGGAAC+TGG 0.519277 1:+81967901 MsG0180004739.01.T01:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 1:-81967594 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 1:+81967253 MsG0180004739.01.T01:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 1:-81967750 None:intergenic
CATGTTGTAGACTTCATGGT+TGG 0.543936 1:+81969231 MsG0180004739.01.T01:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 1:+81969273 MsG0180004739.01.T01:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 1:-81968168 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 1:+81967517 MsG0180004739.01.T01:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 1:-81967230 None:intergenic
TGAAATCTTTGATTATGCGA+TGG 0.571761 1:-81967757 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 1:+81967771 MsG0180004739.01.T01:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 1:+81969300 MsG0180004739.01.T01:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 1:+81967904 MsG0180004739.01.T01:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 1:+81968144 MsG0180004739.01.T01:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 1:-81966770 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 1:-81968193 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 1:-81967753 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 1:+81969322 MsG0180004739.01.T01:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 1:+81967521 MsG0180004739.01.T01:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 1:+81967785 MsG0180004739.01.T01:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 1:+81967213 MsG0180004739.01.T01:CDS
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 1:+81967480 MsG0180004739.01.T01:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 1:+81968189 MsG0180004739.01.T01:CDS
AGGAGAGATCAACCATCTAG+AGG 0.666652 1:-81969385 MsG0180004738.01.T01:three_prime_UTR
AAAGATTTCATGATTCAGGG+AGG 0.670380 1:+81967770 MsG0180004739.01.T01:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 1:+81967922 MsG0180004739.01.T01:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 1:-81969261 MsG0180004738.01.T01:three_prime_UTR
TTGATGGAATGGATGTTGTG+AGG 0.719565 1:+81969284 MsG0180004739.01.T01:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 1:+81967248 MsG0180004739.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATATTATTAAAACTT+GGG - Chr1:81968636-81968655 None:intergenic 10.0%
!! CTTATTTAAATAAATTTCAA+AGG - Chr1:81968382-81968401 None:intergenic 10.0%
!! ACAAATTTAAATCTGAATAA+TGG - Chr1:81968055-81968074 None:intergenic 15.0%
!! ATATATATATATGTTCTTCA+AGG - Chr1:81966969-81966988 None:intergenic 15.0%
!! GAAAACATATTATTAAAACT+TGG - Chr1:81968637-81968656 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + Chr1:81968326-81968345 MsG0180004739.01.T01:intron 15.0%
!! TATATATATATGTTCTTCAA+GGG - Chr1:81966968-81966987 None:intergenic 15.0%
!!! AAATTAGAGTTTTGAAATAT+AGG - Chr1:81968802-81968821 None:intergenic 15.0%
!!! TTTGTTTTTGTTTCATTTTA+GGG + Chr1:81967171-81967190 MsG0180004739.01.T01:intron 15.0%
!!! TTTTGTTTTTGTTTCATTTT+AGG + Chr1:81967170-81967189 MsG0180004739.01.T01:intron 15.0%
!! AATATTCCTTGTATGTAAAA+GGG - Chr1:81968672-81968691 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG + Chr1:81968263-81968282 MsG0180004739.01.T01:intron 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG - Chr1:81968257-81968276 None:intergenic 20.0%
!! GTTTAATAAGTCTTTAAATG+TGG + Chr1:81967036-81967055 MsG0180004739.01.T01:intron 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - Chr1:81968673-81968692 None:intergenic 20.0%
!! TGTAAATGTACATTGTTAAT+GGG + Chr1:81967139-81967158 MsG0180004739.01.T01:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + Chr1:81968674-81968693 MsG0180004739.01.T01:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG + Chr1:81968264-81968283 MsG0180004739.01.T01:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - Chr1:81968451-81968470 None:intergenic 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG - Chr1:81968256-81968275 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + Chr1:81968673-81968692 MsG0180004739.01.T01:intron 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - Chr1:81968487-81968506 None:intergenic 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + Chr1:81967887-81967906 MsG0180004739.01.T01:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + Chr1:81967612-81967631 MsG0180004739.01.T01:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG + Chr1:81968072-81968091 MsG0180004739.01.T01:intron 20.0%
!!! TTGTTTTTGTTTCATTTTAG+GGG + Chr1:81967172-81967191 MsG0180004739.01.T01:intron 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG + Chr1:81968843-81968862 MsG0180004739.01.T01:intron 20.0%
! AATCAAAGATTTCATGATTC+AGG + Chr1:81967766-81967785 MsG0180004739.01.T01:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - Chr1:81967822-81967841 None:intergenic 25.0%
! ATAAGAATTAGATAGTAACC+TGG - Chr1:81966797-81966816 None:intergenic 25.0%
! ATAATTGCATTTGTGAGATT+GGG - Chr1:81968926-81968945 None:intergenic 25.0%
! ATCAAAGATTTCATGATTCA+GGG + Chr1:81967767-81967786 MsG0180004739.01.T01:CDS 25.0%
! CAATTGCTACAATGTTATAT+TGG + Chr1:81968960-81968979 MsG0180004739.01.T01:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG - Chr1:81968632-81968651 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG + Chr1:81967357-81967376 MsG0180004739.01.T01:intron 25.0%
! CTGTAAATGTACATTGTTAA+TGG + Chr1:81967138-81967157 MsG0180004739.01.T01:intron 25.0%
! TAACTCAAAAACAACTTGTA+AGG - Chr1:81968606-81968625 None:intergenic 25.0%
! TACTTTATGAATCAGATAAG+GGG + Chr1:81968265-81968284 MsG0180004739.01.T01:intron 25.0%
! TATAATTGCATTTGTGAGAT+TGG - Chr1:81968927-81968946 None:intergenic 25.0%
! TGCAATCAAAGTCAATAAAA+AGG - Chr1:81969047-81969066 None:intergenic 25.0%
! TTGACAATTTAACATCAACA+GGG + Chr1:81968995-81969014 MsG0180004739.01.T01:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG + Chr1:81968883-81968902 MsG0180004739.01.T01:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + Chr1:81968994-81969013 MsG0180004739.01.T01:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG + Chr1:81967394-81967413 MsG0180004739.01.T01:intron 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - Chr1:81969350-81969369 MsG0180004738.01.T01:three_prime_UTR 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - Chr1:81969349-81969368 MsG0180004738.01.T01:three_prime_UTR 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG - Chr1:81966843-81966862 None:intergenic 25.0%
!! ATTGGTTTCATTATCTTACA+TGG + Chr1:81967431-81967450 MsG0180004739.01.T01:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG + Chr1:81967381-81967400 MsG0180004739.01.T01:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + Chr1:81968029-81968048 MsG0180004739.01.T01:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG - Chr1:81967360-81967379 None:intergenic 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG + Chr1:81967502-81967521 MsG0180004739.01.T01:CDS 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG - Chr1:81966842-81966861 None:intergenic 25.0%
!!! AAAAGTACAGACTTTTAGTT+AGG - Chr1:81968827-81968846 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + Chr1:81967894-81967913 MsG0180004739.01.T01:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + Chr1:81967895-81967914 MsG0180004739.01.T01:intron 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG + Chr1:81968218-81968237 MsG0180004739.01.T01:CDS 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG + Chr1:81968829-81968848 MsG0180004739.01.T01:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG + Chr1:81968568-81968587 MsG0180004739.01.T01:intron 25.0%
!!! TTACAAGTTGTTTTTGAGTT+AGG + Chr1:81968605-81968624 MsG0180004739.01.T01:intron 25.0%
AAAAACAACTTGTAAGGTGA+GGG - Chr1:81968600-81968619 None:intergenic 30.0%
ACATATACACATGATGCTAA+GGG + Chr1:81967849-81967868 MsG0180004739.01.T01:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + Chr1:81969355-81969374 MsG0180004739.01.T01:CDS 30.0%
ATGCTATAAGCTGCAAATTA+AGG - Chr1:81966859-81966878 None:intergenic 30.0%
CCACTTAAAAATACATTTCC+AGG - Chr1:81968570-81968589 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG + Chr1:81967848-81967867 MsG0180004739.01.T01:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - Chr1:81967760-81967779 None:intergenic 30.0%
TTCTTTGATGTAGTTATTGG+AGG + Chr1:81967505-81967524 MsG0180004739.01.T01:CDS 30.0%
TTTGAGAATAATAACTGTGC+AGG + Chr1:81967701-81967720 MsG0180004739.01.T01:intron 30.0%
! GCATAAGAATGTGTTACTAA+AGG + Chr1:81967112-81967131 MsG0180004739.01.T01:intron 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + Chr1:81967649-81967668 MsG0180004739.01.T01:intron 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + Chr1:81969227-81969246 MsG0180004739.01.T01:intron 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG + Chr1:81968567-81968586 MsG0180004739.01.T01:intron 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - Chr1:81968890-81968909 None:intergenic 30.0%
AAAGATTTCATGATTCAGGG+AGG + Chr1:81967770-81967789 MsG0180004739.01.T01:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + Chr1:81967771-81967790 MsG0180004739.01.T01:CDS 35.0%
AAGCGAAATCAATCACTTCT+CGG + Chr1:81967298-81967317 MsG0180004739.01.T01:CDS 35.0%
AATTGACTGCCGTTACTATT+AGG - Chr1:81968201-81968220 None:intergenic 35.0%
ATCTTTGATTATGCGATGGA+AGG - Chr1:81967756-81967775 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG + Chr1:81966734-81966753 MsG0180004739.01.T01:CDS 35.0%
ATGACAATTTACTGCATCCA+AGG - Chr1:81967233-81967252 None:intergenic 35.0%
CAAAAACAACTTGTAAGGTG+AGG - Chr1:81968601-81968620 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + Chr1:81969268-81969287 MsG0180004739.01.T01:CDS 35.0%
TGACATGTCCAAATACAACA+TGG - Chr1:81969264-81969283 MsG0180004738.01.T01:three_prime_UTR 35.0%
TGGTTGAGACGCTAAATATT+AGG - Chr1:81969136-81969155 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + Chr1:81967541-81967560 MsG0180004739.01.T01:CDS 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - Chr1:81968784-81968803 None:intergenic 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - Chr1:81967577-81967596 None:intergenic 35.0%
! GAAAACCTTGCTTGTTACTT+TGG - Chr1:81967488-81967507 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + Chr1:81968663-81968682 MsG0180004739.01.T01:intron 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - Chr1:81967578-81967597 None:intergenic 35.0%
! TCTTTTTACTGGACTGTCAA+TGG + Chr1:81968083-81968102 MsG0180004739.01.T01:intron 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + Chr1:81967640-81967659 MsG0180004739.01.T01:intron 35.0%
AATAACTGTGCAGGAGAGAA+AGG + Chr1:81967710-81967729 MsG0180004739.01.T01:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + Chr1:81968189-81968208 MsG0180004739.01.T01:CDS 40.0%
ACGTTAAATGAGATATGGCC+TGG + Chr1:81968549-81968568 MsG0180004739.01.T01:intron 40.0%
AGATGGGAAAATAGTCTCAC+CGG - Chr1:81968240-81968259 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + Chr1:81967772-81967791 MsG0180004739.01.T01:CDS 40.0%
AGGCCATATCTCATTTAACG+TGG - Chr1:81968550-81968569 None:intergenic 40.0%
CATGTTGTAGACTTCATGGT+TGG + Chr1:81969231-81969250 MsG0180004739.01.T01:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + Chr1:81969253-81969272 MsG0180004739.01.T01:CDS 40.0%
GGATGCAGTAAATTGTCATC+AGG + Chr1:81967234-81967253 MsG0180004739.01.T01:CDS 40.0%
GGCCATATCTCATTTAACGT+GGG - Chr1:81968549-81968568 None:intergenic 40.0%
GTCATCAGGATATCATTACG+CGG + Chr1:81967248-81967267 MsG0180004739.01.T01:CDS 40.0%
GTCCCACGTTAAATGAGATA+TGG + Chr1:81968544-81968563 MsG0180004739.01.T01:intron 40.0%
TCGGCTGTGATTCAAAACAT+TGG + Chr1:81967413-81967432 MsG0180004739.01.T01:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + Chr1:81967532-81967551 MsG0180004739.01.T01:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + Chr1:81969273-81969292 MsG0180004739.01.T01:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - Chr1:81967558-81967577 None:intergenic 40.0%
TTGATGGAATGGATGTTGTG+AGG + Chr1:81969284-81969303 MsG0180004739.01.T01:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + Chr1:81967901-81967920 MsG0180004739.01.T01:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - Chr1:81967753-81967772 None:intergenic 40.0%
! CAGCATTGAAACCAGAAAGA+AGG - Chr1:81966773-81966792 None:intergenic 40.0%
!! GTTTTGAATCACAGCCGAAT+TGG - Chr1:81967411-81967430 None:intergenic 40.0%
!! TACATGGCTGTGTTACTTCT+AGG + Chr1:81967447-81967466 MsG0180004739.01.T01:intron 40.0%
AAGGGGAATCCTTCTGTGTT+TGG + Chr1:81968282-81968301 MsG0180004739.01.T01:intron 45.0%
ACTGCCGTTACTATTAGGAC+CGG - Chr1:81968196-81968215 None:intergenic 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + Chr1:81967919-81967938 MsG0180004739.01.T01:CDS 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + Chr1:81968283-81968302 MsG0180004739.01.T01:intron 45.0%
CAGAGTCAGAACCTTCTTTC+TGG + Chr1:81966759-81966778 MsG0180004739.01.T01:CDS 45.0%
CCTGTTTACCCAAACACAGA+AGG - Chr1:81968294-81968313 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + Chr1:81968291-81968310 MsG0180004739.01.T01:intron 45.0%
GAGACAAGCAGCTACAACAA+TGG + Chr1:81969322-81969341 MsG0180004739.01.T01:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + Chr1:81967480-81967499 MsG0180004739.01.T01:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + Chr1:81967517-81967536 MsG0180004739.01.T01:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + Chr1:81969373-81969392 MsG0180004739.01.T01:CDS 45.0%
TGTGAGGACACTTGAATCAC+AGG + Chr1:81969300-81969319 MsG0180004739.01.T01:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + Chr1:81967716-81967735 MsG0180004739.01.T01:intron 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + Chr1:81968144-81968163 MsG0180004739.01.T01:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - Chr1:81968171-81968190 None:intergenic 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + Chr1:81967589-81967608 MsG0180004739.01.T01:CDS 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + Chr1:81968174-81968193 MsG0180004739.01.T01:CDS 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG + Chr1:81966776-81966795 MsG0180004739.01.T01:CDS 45.0%
AATTGGATGCAGGGAACTGG+TGG + Chr1:81967904-81967923 MsG0180004739.01.T01:intron 50.0%
CAGGATATCATTACGCGGCT+AGG + Chr1:81967253-81967272 MsG0180004739.01.T01:CDS 50.0%
GACCAACATGCTTCACTGCA+AGG - Chr1:81968149-81968168 None:intergenic 50.0%
GCTTACCTGTGCACAAAGCT+CGG - Chr1:81967597-81967616 None:intergenic 50.0%
GGTGGAGTCAGTATCTATGG+TGG + Chr1:81967922-81967941 MsG0180004739.01.T01:CDS 50.0%
TCATTACGCGGCTAGGCTTT+CGG + Chr1:81967260-81967279 MsG0180004739.01.T01:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + Chr1:81967521-81967540 MsG0180004739.01.T01:CDS 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + Chr1:81968164-81968183 MsG0180004739.01.T01:CDS 50.0%
ACTGCATCCAAGGTGTGCTC+TGG - Chr1:81967223-81967242 None:intergenic 55.0%
AGCAGTACCAGAGCACACCT+TGG + Chr1:81967213-81967232 MsG0180004739.01.T01:CDS 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + Chr1:81968150-81968169 MsG0180004739.01.T01:intron 55.0%
CAGGGAGGGGACTTCACAGA+AGG + Chr1:81967785-81967804 MsG0180004739.01.T01:CDS 60.0%
GTGTGTGCGCGCGCACGTGC+TGG - Chr1:81969156-81969175 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81966729 81969399 81966729 ID=MsG0180004739.01;Name=MsG0180004739.01
Chr1 mRNA 81966729 81969399 81966729 ID=MsG0180004739.01.T01;Parent=MsG0180004739.01;Name=MsG0180004739.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|7|0|251
Chr1 exon 81966729 81966797 81966729 ID=MsG0180004739.01.T01:exon:34556;Parent=MsG0180004739.01.T01
Chr1 exon 81967192 81967347 81967192 ID=MsG0180004739.01.T01:exon:34557;Parent=MsG0180004739.01.T01
Chr1 exon 81967469 81967610 81967469 ID=MsG0180004739.01.T01:exon:34558;Parent=MsG0180004739.01.T01
Chr1 exon 81967723 81967811 81967723 ID=MsG0180004739.01.T01:exon:34559;Parent=MsG0180004739.01.T01
Chr1 exon 81967916 81967970 81967916 ID=MsG0180004739.01.T01:exon:34560;Parent=MsG0180004739.01.T01
Chr1 exon 81968154 81968239 81968154 ID=MsG0180004739.01.T01:exon:34561;Parent=MsG0180004739.01.T01
Chr1 exon 81969241 81969399 81969241 ID=MsG0180004739.01.T01:exon:34562;Parent=MsG0180004739.01.T01
Chr1 CDS 81966729 81966797 81966729 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Chr1 CDS 81967192 81967347 81967192 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Chr1 CDS 81967469 81967610 81967469 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Chr1 CDS 81967723 81967811 81967723 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Chr1 CDS 81967916 81967970 81967916 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Chr1 CDS 81968154 81968239 81968154 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Chr1 CDS 81969241 81969399 81969241 ID=MsG0180004739.01.T01:cds;Parent=MsG0180004739.01.T01
Gene Sequence

>MsG0180004739.01.T01

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>MsG0180004739.01.T01

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*