AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015129.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015129.01.T01 MTR_3g063250 91.063 414 19 3 1 410 1 400 0.0 685
MsG0380015129.01.T01 MTR_3g063250 90.551 381 18 3 1 377 1 367 0.0 622
MsG0380015129.01.T01 MTR_3g063240 81.845 336 46 2 75 410 7 327 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015129.01.T01 AT3G02690 71.930 342 77 3 65 405 89 412 7.74e-161 459

Find 132 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.060471 3:-65568497 MsG0380015129.01.T01:CDS
GTACTTGCTGCTTTGTTATT+TGG 0.128361 3:-65567367 MsG0380015129.01.T01:CDS
ATTGGGAATGCTAGTGCTTT+TGG 0.236775 3:-65565190 MsG0380015129.01.T01:three_prime_UTR
GCAAGTACAGCCACCGTTAA+AGG 0.249038 3:+65567382 None:intergenic
TACCTTCTGGTTTCAATGCT+TGG 0.281970 3:-65568543 MsG0380015129.01.T01:CDS
CATTGGGGACAGTTGTAAAA+TGG 0.286120 3:-65566048 MsG0380015129.01.T01:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.300946 3:-65568496 MsG0380015129.01.T01:CDS
GCAGAAGACTTCAGCTGGTT+TGG 0.301404 3:-65568455 MsG0380015129.01.T01:CDS
TATCACCTGTACAGCTTGTT+GGG 0.314803 3:-65565336 MsG0380015129.01.T01:CDS
TATTGATTCACAACCTTTAA+CGG 0.323872 3:-65567395 MsG0380015129.01.T01:CDS
CAGAAGACTTCAGCTGGTTT+GGG 0.335089 3:-65568454 MsG0380015129.01.T01:CDS
GGTGGATTCTATTGATTTAC+CGG 0.335931 3:+65568852 None:intergenic
ATTGGAGTTGTTGGAGCTGC+CGG 0.341031 3:-65567337 MsG0380015129.01.T01:CDS
GTGCCTTGGGGAAGCGTTAT+GGG 0.347839 3:-65568725 MsG0380015129.01.T01:CDS
AAAATGGCACGAACTCGAAT+TGG 0.361517 3:-65565208 MsG0380015129.01.T01:three_prime_UTR
AGAGGAAGAGCTTTACCTTC+TGG 0.363399 3:-65568556 MsG0380015129.01.T01:CDS
TGTGCCTTGGGGAAGCGTTA+TGG 0.370312 3:-65568726 MsG0380015129.01.T01:CDS
GATGGAGTGGTGGAAGAAGT+TGG 0.370796 3:+65568913 None:intergenic
GGTTGCGGTGACGGCGGTGA+AGG 0.376918 3:+65568981 None:intergenic
CATCGAAGAGACTGTGCCTT+GGG 0.379009 3:-65568738 MsG0380015129.01.T01:CDS
GGTGAGTCCATTGGAGTTGT+TGG 0.381294 3:-65567346 MsG0380015129.01.T01:CDS
GGTGGTGGTGGTTGCGGTGA+CGG 0.383927 3:+65568972 None:intergenic
GGAGCTGCCGGGCTTGTACT+TGG 0.385948 3:-65567325 MsG0380015129.01.T01:CDS
AAAATTGTATTTACACTGTA+AGG 0.386896 3:+65565112 None:intergenic
AACAATGAGCCTGCTGTAAG+TGG 0.386921 3:-65566320 MsG0380015129.01.T01:CDS
AGTTGCTCCCATCAAATGAT+AGG 0.387462 3:+65567007 None:intergenic
TTGGTAGATTGCGTCGGAAC+AGG 0.388498 3:-65568820 MsG0380015129.01.T01:CDS
GATGTAGTTTAGATCACATT+GGG 0.389033 3:-65566064 MsG0380015129.01.T01:intron
TCTGCCATCTGTGCAGTAAG+AGG 0.396515 3:+65565063 None:intergenic
CACAAATGAAATATACATCT+TGG 0.403871 3:-65564933 MsG0380015129.01.T01:three_prime_UTR
CGAAAATTGAGGCAAACATT+GGG 0.404211 3:+65565753 None:intergenic
TTGCTTCGTCTTCTTCGGTT+AGG 0.405179 3:+65568779 None:intergenic
CCTAGCGTAACAGTAATCTA+TGG 0.407940 3:+65565019 None:intergenic
AGAGTAGCGGCGGGTGGTGG+TGG 0.412700 3:+65568960 None:intergenic
TTTCAGGGGTTTCTTGCTGA+AGG 0.419771 3:-65568481 MsG0380015129.01.T01:CDS
CACTGTGGGGAAGTGGGGAG+TGG 0.422259 3:-65566981 MsG0380015129.01.T01:CDS
ATGGAGTGGTGGAAGAAGTT+GGG 0.436184 3:+65568914 None:intergenic
CCGAAAATTGAGGCAAACAT+TGG 0.438271 3:+65565752 None:intergenic
TGTGGGGAAGTGGGGAGTGG+TGG 0.438538 3:-65566978 MsG0380015129.01.T01:CDS
ACCCATCCAGTTGCCATGAT+AGG 0.438828 3:+65566886 None:intergenic
GCGGCGGGTGGTGGTGGTTG+CGG 0.441258 3:+65568966 None:intergenic
TTGGAGTTGTTGGAGCTGCC+GGG 0.442346 3:-65567336 MsG0380015129.01.T01:CDS
TTACCTGCCCTATCATTTGA+TGG 0.443344 3:-65567015 MsG0380015129.01.T01:CDS
AACTTCTCACTGTGGGGAAG+TGG 0.443633 3:-65566988 MsG0380015129.01.T01:CDS
TTATCACCTGTACAGCTTGT+TGG 0.446411 3:-65565337 MsG0380015129.01.T01:CDS
GTGGAAGAAGTTGGGAATTG+AGG 0.453224 3:+65568922 None:intergenic
AAAGAAGTGATTCCTAATTA+CGG 0.454305 3:-65568646 MsG0380015129.01.T01:CDS
TCTGATCCTATCATGGCAAC+TGG 0.460438 3:-65566892 MsG0380015129.01.T01:CDS
TTGCAGCATATGGTTATTGG+TGG 0.460764 3:-65566371 MsG0380015129.01.T01:intron
AAATGGCACGAACTCGAATT+GGG 0.461929 3:-65565207 MsG0380015129.01.T01:three_prime_UTR
CATGATAGGATCAGAGTACT+TGG 0.465171 3:+65566900 None:intergenic
TTCAGGGGTTTCTTGCTGAA+GGG 0.468219 3:-65568480 MsG0380015129.01.T01:CDS
TTGTTATTTGGTGAGTCCAT+TGG 0.469846 3:-65567355 MsG0380015129.01.T01:CDS
GAAAGAGTAGCGGCGGGTGG+TGG 0.471413 3:+65568957 None:intergenic
GTTGCGGTGACGGCGGTGAA+GGG 0.482225 3:+65568982 None:intergenic
TTTGGAAGTGCTGTTAGCTA+TGG 0.483715 3:-65566242 MsG0380015129.01.T01:CDS
ACAAATGAAATATACATCTT+GGG 0.490952 3:-65564932 MsG0380015129.01.T01:three_prime_UTR
GTACAGTTCAACGGATGTAT+TGG 0.491468 3:-65566285 MsG0380015129.01.T01:CDS
ATGCGGAAACGGAGAGAAGA+TGG 0.492013 3:+65568895 None:intergenic
TGGAGCATGGAATGCGGAAA+CGG 0.496500 3:+65568884 None:intergenic
CTGGCCCCAACAAGCTGTAC+AGG 0.499277 3:+65565331 None:intergenic
GGGTTGCAGAAGACTTCAGC+TGG 0.500512 3:-65568460 MsG0380015129.01.T01:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 3:-65566899 MsG0380015129.01.T01:CDS
ACTTCTCACTGTGGGGAAGT+GGG 0.511659 3:-65566987 MsG0380015129.01.T01:CDS
CCATAGATTACTGTTACGCT+AGG 0.515095 3:-65565019 MsG0380015129.01.T01:three_prime_UTR
ATCCTATCATGGCAACTGGA+TGG 0.518310 3:-65566888 MsG0380015129.01.T01:CDS
CAAGCCTCTTACTGCACAGA+TGG 0.527408 3:-65565067 MsG0380015129.01.T01:three_prime_UTR
GGGCTTGTACTTGGCGTCGT+AGG 0.527479 3:-65567316 MsG0380015129.01.T01:CDS
TTGGCACTGTCATGGTTCGG+TGG 0.529695 3:-65566927 MsG0380015129.01.T01:CDS
TGGCACTGTCATGGTTCGGT+GGG 0.533959 3:-65566926 MsG0380015129.01.T01:CDS
TACCTGCCCTATCATTTGAT+GGG 0.539425 3:-65567014 MsG0380015129.01.T01:CDS
CTTCTCACTGTGGGGAAGTG+GGG 0.546730 3:-65566986 MsG0380015129.01.T01:CDS
TGGGAGCAACTTCTCACTGT+GGG 0.546919 3:-65566995 MsG0380015129.01.T01:CDS
ATCTACCAACTCGAGGTTGG+TGG 0.552340 3:+65568834 None:intergenic
ACGGAGAGAAGATGGAGTGG+TGG 0.552388 3:+65568903 None:intergenic
GGCAGCTCCAACAACTCCAA+TGG 0.552770 3:+65567339 None:intergenic
GGTGACGGCGGTGAAGGGAG+TGG 0.554503 3:+65568987 None:intergenic
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 3:-65566953 MsG0380015129.01.T01:CDS
TCCTATCATGGCAACTGGAT+GGG 0.555793 3:-65566887 MsG0380015129.01.T01:intron
TTAAGACTCCCACTTACAGC+AGG 0.557189 3:+65566311 None:intergenic
TATAGATTATGACTTGTGTA+TGG 0.557434 3:-65564982 MsG0380015129.01.T01:three_prime_UTR
TCATCGAAGAGACTGTGCCT+TGG 0.558301 3:-65568739 MsG0380015129.01.T01:CDS
CGTAGGACTTGTGTTACTTG+AGG 0.562304 3:-65567299 MsG0380015129.01.T01:intron
CTCCCATCAAATGATAGGGC+AGG 0.566112 3:+65567012 None:intergenic
CAGTTGGCACTGTCATGGTT+CGG 0.567605 3:-65566930 MsG0380015129.01.T01:CDS
TTTCTGGGGAACTGCAATGG+TGG 0.568350 3:-65568674 MsG0380015129.01.T01:CDS
GGATGTAGTTTAGATCACAT+TGG 0.568557 3:-65566065 MsG0380015129.01.T01:intron
TACTGTAGCTGCAATATACA+TGG 0.570176 3:-65565305 MsG0380015129.01.T01:CDS
CGGCGACAGCATGGCCACGA+TGG 0.570207 3:+65569020 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 3:-65566935 MsG0380015129.01.T01:CDS
GTTGCTCCCATCAAATGATA+GGG 0.584772 3:+65567008 None:intergenic
TACGACGCCAAGTACAAGCC+CGG 0.585440 3:+65567318 None:intergenic
TCGATGCTGCTTGCTTTCAG+GGG 0.585931 3:-65568495 MsG0380015129.01.T01:CDS
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 3:-65566946 MsG0380015129.01.T01:CDS
TGGGAATTGAGGAGTGTGAG+AGG 0.588985 3:+65568933 None:intergenic
TGATTCACAACCTTTAACGG+TGG 0.589193 3:-65567392 MsG0380015129.01.T01:CDS
CAAGTTCAATTAAGCACTTG+TGG 0.589636 3:-65569090 None:intergenic
GGTGGTGGTTGCGGTGACGG+CGG 0.590085 3:+65568975 None:intergenic
ATCCAAGCATTGAAACCAGA+AGG 0.594844 3:+65568541 None:intergenic
ATCACCTGTACAGCTTGTTG+GGG 0.596575 3:-65565335 MsG0380015129.01.T01:CDS
GCAATCTACCAACTCGAGGT+TGG 0.599538 3:+65568831 None:intergenic
GTAGCACCACGGCGACAGCA+TGG 0.599780 3:+65569011 None:intergenic
GCAGTCTTACCCGAAAATTG+AGG 0.600905 3:+65565742 None:intergenic
AGAGGTGAAAGAGTAGCGGC+GGG 0.615126 3:+65568951 None:intergenic
CTTGGGGAAGCGTTATGGGA+AGG 0.616732 3:-65568721 MsG0380015129.01.T01:CDS
AGAATCCACCAACCTCGAGT+TGG 0.617063 3:-65568839 MsG0380015129.01.T01:CDS
AAGAATCGTGAATGCCACAA+GGG 0.622389 3:+65566343 None:intergenic
ACAATGAGCCTGCTGTAAGT+GGG 0.625638 3:-65566319 MsG0380015129.01.T01:CDS
GAGAGGTGAAAGAGTAGCGG+CGG 0.626582 3:+65568950 None:intergenic
TAAGAATCGTGAATGCCACA+AGG 0.626803 3:+65566342 None:intergenic
GGATTCTATTGATTTACCGG+TGG 0.627233 3:+65568855 None:intergenic
TATTGCAGCTACAGTAACAC+TGG 0.628956 3:+65565312 None:intergenic
GTGCTTAAGATCACATATCA+CGG 0.639978 3:+65565146 None:intergenic
GAAAATTGAGGCAAACATTG+GGG 0.640798 3:+65565754 None:intergenic
TCTTAAAGAGTACAGTTCAA+CGG 0.646276 3:-65566294 MsG0380015129.01.T01:CDS
ATGGGAGCAACTTCTCACTG+TGG 0.649529 3:-65566996 MsG0380015129.01.T01:CDS
GTTGGACGTAAGATTACTAA+CGG 0.652867 3:+65564863 None:intergenic
CTCGAGTTGGTAGATTGCGT+CGG 0.653601 3:-65568826 MsG0380015129.01.T01:CDS
GGTGAAAGAGTAGCGGCGGG+TGG 0.654425 3:+65568954 None:intergenic
ATCGAAGAGACTGTGCCTTG+GGG 0.656879 3:-65568737 MsG0380015129.01.T01:CDS
GAAACGGAGAGAAGATGGAG+TGG 0.658221 3:+65568900 None:intergenic
CTTCCCATAACGCTTCCCCA+AGG 0.660357 3:+65568722 None:intergenic
AGAATCGTGAATGCCACAAG+GGG 0.663619 3:+65566344 None:intergenic
TGTGAGAGGTGAAAGAGTAG+CGG 0.670902 3:+65568947 None:intergenic
AACTCCACTCACTTCCATCG+TGG 0.678319 3:-65569034 MsG0380015129.01.T01:five_prime_UTR
CGACGCAATCTACCAACTCG+AGG 0.679091 3:+65568827 None:intergenic
ATGGCCACGATGGAAGTGAG+TGG 0.695329 3:+65569030 None:intergenic
TCGTGGCCATGCTGTCGCCG+TGG 0.699440 3:-65569017 MsG0380015129.01.T01:exon
GGGAGCAACTTCTCACTGTG+GGG 0.700978 3:-65566994 MsG0380015129.01.T01:CDS
AAGGGAGTGGAGTAGCACCA+CGG 0.710930 3:+65569000 None:intergenic
ATGTAGTTTAGATCACATTG+GGG 0.726835 3:-65566063 MsG0380015129.01.T01:intron
GAATCGTGAATGCCACAAGG+GGG 0.736108 3:+65566345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - Chr3:65568254-65568273 MsG0380015129.01.T01:intron 0.0%
!! AAATATATAATTGTAAAAGA+TGG + Chr3:65568372-65568391 None:intergenic 10.0%
!!! AATTTGTTAAAAAAAAAAAG+AGG - Chr3:65567471-65567490 MsG0380015129.01.T01:intron 10.0%
!!! TTTCATTATATTTATTTTTG+CGG - Chr3:65567209-65567228 MsG0380015129.01.T01:intron 10.0%
!!! TTTTTTTTTATATATGATGA+TGG - Chr3:65569042-65569061 MsG0380015129.01.T01:five_prime_UTR 10.0%
!!! TTTTTTTTTTTTAAAGAAAG+TGG + Chr3:65567929-65567948 None:intergenic 10.0%
!! AAAAAAAAAAAATCAAAACC+CGG + Chr3:65568246-65568265 None:intergenic 15.0%
!! TAAAAATTACAAAATCAACT+AGG + Chr3:65566831-65566850 None:intergenic 15.0%
!! TAAATATATGAATTTCAACA+AGG - Chr3:65567814-65567833 MsG0380015129.01.T01:intron 15.0%
!!! AAAATATTTGAATTTTCTAG+AGG + Chr3:65568493-65568512 None:intergenic 15.0%
!!! AAAATCTTTTACATATATTG+TGG - Chr3:65566743-65566762 MsG0380015129.01.T01:intron 15.0%
!!! AAGATTTTGATTTCTAATTT+TGG + Chr3:65566731-65566750 None:intergenic 15.0%
!!! AGATTTTGATTTCTAATTTT+GGG + Chr3:65566730-65566749 None:intergenic 15.0%
!!! CTTGATTTTTTAATTGAAAA+AGG + Chr3:65567154-65567173 None:intergenic 15.0%
!!! TTATATATTAAGTTTTCTAC+TGG - Chr3:65568687-65568706 MsG0380015129.01.T01:CDS 15.0%
!! AAAATTGTATTTACACTGTA+AGG + Chr3:65568833-65568852 None:intergenic 20.0%
!! AAATATGTAAGTGTACAAAA+TGG + Chr3:65568044-65568063 None:intergenic 20.0%
!! ACAAATGAAATATACATCTT+GGG - Chr3:65569010-65569029 MsG0380015129.01.T01:CDS 20.0%
!! ACTAGTAGTACTATTAATAA+GGG - Chr3:65565788-65565807 MsG0380015129.01.T01:CDS 20.0%
!! ATAAATGAAAATTCACAGAA+AGG + Chr3:65567788-65567807 None:intergenic 20.0%
!! ATAATATGGTGTATTCTTTA+TGG + Chr3:65568102-65568121 None:intergenic 20.0%
!! GATACTTCAATAAATTATGA+AGG + Chr3:65568423-65568442 None:intergenic 20.0%
!! TAACATATCTATTCTACAAA+AGG + Chr3:65565769-65565788 None:intergenic 20.0%
!! TAATATGGTGTATTCTTTAT+GGG + Chr3:65568101-65568120 None:intergenic 20.0%
!! TACTAGTAGTACTATTAATA+AGG - Chr3:65565787-65565806 MsG0380015129.01.T01:CDS 20.0%
!!! ATGTTTTCTTAAAAAATGAG+AGG + Chr3:65567956-65567975 None:intergenic 20.0%
!!! GATAATTTTATGCTATGAAA+CGG - Chr3:65567110-65567129 MsG0380015129.01.T01:intron 20.0%
!!! TAATTTTGGTTTTAACCTAA+AGG - Chr3:65566671-65566690 MsG0380015129.01.T01:intron 20.0%
!!! TACTTGAGGTATTTTAATTT+TGG - Chr3:65566657-65566676 MsG0380015129.01.T01:intron 20.0%
!!! TGTTTTCTTAAAAAATGAGA+GGG + Chr3:65567955-65567974 None:intergenic 20.0%
!!! TTTTAAATTGTAACGCAAAA+AGG + Chr3:65567254-65567273 None:intergenic 20.0%
!!! TTTTGATTAGTTGTAAATTC+AGG - Chr3:65568849-65568868 MsG0380015129.01.T01:CDS 20.0%
! AAAATCAGAAAGACAACTAA+TGG - Chr3:65568298-65568317 MsG0380015129.01.T01:intron 25.0%
! AAAGAAGTGATTCCTAATTA+CGG - Chr3:65565296-65565315 MsG0380015129.01.T01:CDS 25.0%
! AAATTATGAAGGATGTAAGT+GGG + Chr3:65568412-65568431 None:intergenic 25.0%
! ACGAAAAAATGTGTATACAA+AGG + Chr3:65568551-65568570 None:intergenic 25.0%
! CACAAATGAAATATACATCT+TGG - Chr3:65569009-65569028 MsG0380015129.01.T01:CDS 25.0%
! CTATGTAGCAATTCTTTAAA+CGG - Chr3:65568321-65568340 MsG0380015129.01.T01:intron 25.0%
! CTTTAGTGAATAAACATAGA+AGG + Chr3:65566883-65566902 None:intergenic 25.0%
! GCACAATGTCAATAATAATA+TGG + Chr3:65568116-65568135 None:intergenic 25.0%
! GTGTTTCATATTGATAGATA+TGG - Chr3:65566399-65566418 MsG0380015129.01.T01:intron 25.0%
! GTTAAAAAAAAAAAGAGGCA+TGG - Chr3:65567476-65567495 MsG0380015129.01.T01:intron 25.0%
! TAAATTATGAAGGATGTAAG+TGG + Chr3:65568413-65568432 None:intergenic 25.0%
! TACTAATTACCATATTGAAG+AGG + Chr3:65568003-65568022 None:intergenic 25.0%
! TAGCGAAATGATGATTATAT+AGG - Chr3:65567410-65567429 MsG0380015129.01.T01:intron 25.0%
! TCAAATGAAGCTTACATTTA+GGG - Chr3:65565886-65565905 MsG0380015129.01.T01:intron 25.0%
! TGAATTAGAGCTTATAGTTA+GGG - Chr3:65565843-65565862 MsG0380015129.01.T01:intron 25.0%
! TTCAAATGAAGCTTACATTT+AGG - Chr3:65565885-65565904 MsG0380015129.01.T01:intron 25.0%
! TTGAATTAGAGCTTATAGTT+AGG - Chr3:65565842-65565861 MsG0380015129.01.T01:intron 25.0%
!! AAATTCACACTTTTGTAAAC+TGG + Chr3:65567290-65567309 None:intergenic 25.0%
!! AGTTTACAAAAGTGTGAATT+TGG - Chr3:65567289-65567308 MsG0380015129.01.T01:intron 25.0%
!! GTTTACAAAAGTGTGAATTT+GGG - Chr3:65567290-65567309 MsG0380015129.01.T01:intron 25.0%
!! GTTTTCTTAAAAAATGAGAG+GGG + Chr3:65567954-65567973 None:intergenic 25.0%
!! TATAGATTATGACTTGTGTA+TGG - Chr3:65568960-65568979 MsG0380015129.01.T01:CDS 25.0%
!! TTTACATATATTGTGGATTG+CGG - Chr3:65566750-65566769 MsG0380015129.01.T01:intron 25.0%
!! TTTTAGCATACAATTTCTCT+TGG - Chr3:65566846-65566865 MsG0380015129.01.T01:intron 25.0%
!!! ATTTTTTCGTTTGGTATTTC+AGG - Chr3:65568561-65568580 MsG0380015129.01.T01:CDS 25.0%
!!! TATTGATAGATATGGATTAG+AGG - Chr3:65566407-65566426 MsG0380015129.01.T01:intron 25.0%
!!! TATTGATTCACAACCTTTAA+CGG - Chr3:65566547-65566566 MsG0380015129.01.T01:intron 25.0%
!!! TATTTCAGGTTTTTGTATCT+CGG - Chr3:65568575-65568594 MsG0380015129.01.T01:CDS 25.0%
!!! TGTATACACATTTTTTCGTT+TGG - Chr3:65568552-65568571 MsG0380015129.01.T01:CDS 25.0%
AAAAGTTGGGGATTCATATT+TGG + Chr3:65566240-65566259 None:intergenic 30.0%
AAACGTTGGATATATAAGAG+AGG - Chr3:65565996-65566015 MsG0380015129.01.T01:intron 30.0%
AACTAGGTAATTGTATGATG+TGG + Chr3:65566815-65566834 None:intergenic 30.0%
ACATAAAAACCCAAACATGT+TGG + Chr3:65566130-65566149 None:intergenic 30.0%
ACTGTAGTGTAGTTCTTATT+TGG - Chr3:65566174-65566193 MsG0380015129.01.T01:intron 30.0%
ATAAAAACCCAAACATGTTG+GGG + Chr3:65566128-65566147 None:intergenic 30.0%
ATGTAGTTTAGATCACATTG+GGG - Chr3:65567879-65567898 MsG0380015129.01.T01:intron 30.0%
ATTTGACCTTGTAACCTTAA+GGG - Chr3:65567856-65567875 MsG0380015129.01.T01:intron 30.0%
CAGATTCATATTGATAGACA+TGG + Chr3:65566366-65566385 None:intergenic 30.0%
CATAAAAACCCAAACATGTT+GGG + Chr3:65566129-65566148 None:intergenic 30.0%
CATCCATGTAAAATCCATAA+CGG - Chr3:65567973-65567992 MsG0380015129.01.T01:intron 30.0%
GATGTAGTTTAGATCACATT+GGG - Chr3:65567878-65567897 MsG0380015129.01.T01:intron 30.0%
! AATATCACCGTTCTTTTTCT+GGG - Chr3:65565253-65565272 MsG0380015129.01.T01:three_prime_UTR 30.0%
! ATATTTCTGCAACTATGATC+AGG + Chr3:65567348-65567367 None:intergenic 30.0%
! CATGTTTGTGTATCTTTTTG+AGG - Chr3:65568524-65568543 MsG0380015129.01.T01:CDS 30.0%
! TAACCGTTATGGATTTTACA+TGG + Chr3:65567979-65567998 None:intergenic 30.0%
! TAATATCACCGTTCTTTTTC+TGG - Chr3:65565252-65565271 MsG0380015129.01.T01:three_prime_UTR 30.0%
! TATTTCTGCAACTATGATCA+GGG + Chr3:65567347-65567366 None:intergenic 30.0%
! TCTTAAAGAGTACAGTTCAA+CGG - Chr3:65567648-65567667 MsG0380015129.01.T01:intron 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - Chr3:65567727-65567746 MsG0380015129.01.T01:intron 30.0%
!! TATTGATAGACATGGATTAG+AGG + Chr3:65566358-65566377 None:intergenic 30.0%
!! TGTATGGCAAGTTTTGTATA+TGG - Chr3:65568976-65568995 MsG0380015129.01.T01:CDS 30.0%
!!! GCTTAGTTTTATGTTGTAAC+CGG - Chr3:65566210-65566229 MsG0380015129.01.T01:intron 30.0%
!!! GGTCAATTTTTTCTCTTGAA+TGG + Chr3:65568351-65568370 None:intergenic 30.0%
!!! GTCAACTTTTTGTGTTGATT+CGG - Chr3:65566444-65566463 MsG0380015129.01.T01:intron 30.0%
!!! TTTGATGCTGAGATTTTTTG+TGG + Chr3:65564890-65564909 None:intergenic 30.0%
AACGGTTAACCTCTTCAATA+TGG - Chr3:65567991-65568010 MsG0380015129.01.T01:intron 35.0%
AAGCTGAAAACAGCTTATGA+AGG - Chr3:65565690-65565709 MsG0380015129.01.T01:intron 35.0%
ACATAACCCAGCGTTAAAAA+TGG - Chr3:65568718-65568737 MsG0380015129.01.T01:CDS 35.0%
ACGAAAAAAGGACCGTAATT+AGG + Chr3:65565311-65565330 None:intergenic 35.0%
ACTGCACTGTAGTTCTTATT+TGG + Chr3:65566285-65566304 None:intergenic 35.0%
AGAGCTTATAGTTAGGGTTA+GGG - Chr3:65565849-65565868 MsG0380015129.01.T01:intron 35.0%
ATTGAAGAGGTTAACCGTTA+TGG + Chr3:65567990-65568009 None:intergenic 35.0%
CACTCTTACCCAAAACTTTA+AGG + Chr3:65566040-65566059 None:intergenic 35.0%
CCATATGCTGCAAAAGAAAA+AGG + Chr3:65567564-65567583 None:intergenic 35.0%
CGAAAATTGAGGCAAACATT+GGG + Chr3:65568192-65568211 None:intergenic 35.0%
CGAATTAAGACACTTCCTTT+AGG + Chr3:65566689-65566708 None:intergenic 35.0%
GAAAATTGAGGCAAACATTG+GGG + Chr3:65568191-65568210 None:intergenic 35.0%
GATCTAAACTACATCCCTTA+AGG + Chr3:65567873-65567892 None:intergenic 35.0%
GATTTGACCTTGTAACCTTA+AGG - Chr3:65567855-65567874 MsG0380015129.01.T01:intron 35.0%
GGATGTAGTTTAGATCACAT+TGG - Chr3:65567877-65567896 MsG0380015129.01.T01:intron 35.0%
GTAGCAATTCTTTAAACGGA+AGG - Chr3:65568325-65568344 MsG0380015129.01.T01:intron 35.0%
GTGCTTAAGATCACATATCA+CGG + Chr3:65568799-65568818 None:intergenic 35.0%
TACTGTAGCTGCAATATACA+TGG - Chr3:65568637-65568656 MsG0380015129.01.T01:CDS 35.0%
TAGAGCTTATAGTTAGGGTT+AGG - Chr3:65565848-65565867 MsG0380015129.01.T01:intron 35.0%
TTCACTAAAGCAAACACTAC+TGG - Chr3:65566893-65566912 MsG0380015129.01.T01:CDS 35.0%
! AACCCATTGCCTTAAAGTTT+TGG - Chr3:65566028-65566047 MsG0380015129.01.T01:intron 35.0%
! AATTTTGGGCTGTGCTTAAA+GGG + Chr3:65566716-65566735 None:intergenic 35.0%
! ACCCATTGCCTTAAAGTTTT+GGG - Chr3:65566029-65566048 MsG0380015129.01.T01:intron 35.0%
! ATATCACCGTTCTTTTTCTG+GGG - Chr3:65565254-65565273 MsG0380015129.01.T01:three_prime_UTR 35.0%
! CAATGTTTGCCTCAATTTTC+GGG - Chr3:65568191-65568210 MsG0380015129.01.T01:intron 35.0%
! CCAATGTTTGCCTCAATTTT+CGG - Chr3:65568190-65568209 MsG0380015129.01.T01:intron 35.0%
! CCTTTTTCTTTTGCAGCATA+TGG - Chr3:65567561-65567580 MsG0380015129.01.T01:intron 35.0%
! CTTTTCGTTTAATTCCAGCT+GGG - Chr3:65565336-65565355 MsG0380015129.01.T01:CDS 35.0%
! CTTTTGCAGCATATGGTTAT+TGG - Chr3:65567568-65567587 MsG0380015129.01.T01:intron 35.0%
! TAATTTTGGGCTGTGCTTAA+AGG + Chr3:65566717-65566736 None:intergenic 35.0%
! TCTTTTCGTTTAATTCCAGC+TGG - Chr3:65565335-65565354 MsG0380015129.01.T01:CDS 35.0%
! TTTTTCGTACCTTTTGTCAC+CGG - Chr3:65568462-65568481 MsG0380015129.01.T01:CDS 35.0%
!! ACATGGATTAGAGGAAAAGT+TGG + Chr3:65566349-65566368 None:intergenic 35.0%
!! ACCCAAAACTTTAAGGCAAT+GGG + Chr3:65566033-65566052 None:intergenic 35.0%
!! ACTTTAAGGCAATGGGTTTA+TGG + Chr3:65566026-65566045 None:intergenic 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG - Chr3:65566184-65566203 MsG0380015129.01.T01:intron 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG + Chr3:65566203-65566184 None:intergenic 35.0%
!! ATGGATTAGAGGAAAAGTTG+GGG + Chr3:65566437-65566418 None:intergenic 35.0%
!! CATGGATTAGAGGAAAAGTT+GGG + Chr3:65566348-65566367 None:intergenic 35.0%
!! CTTTAAGGCAATGGGTTTAT+GGG + Chr3:65566025-65566044 None:intergenic 35.0%
!! GAATTTTCTAGAGGAAATGC+CGG + Chr3:65568484-65568503 None:intergenic 35.0%
!! GGTGGATTCTATTGATTTAC+CGG + Chr3:65565093-65565112 None:intergenic 35.0%
!! GTACTTGCTGCTTTGTTATT+TGG - Chr3:65566575-65566594 MsG0380015129.01.T01:intron 35.0%
!! TACCCAAAACTTTAAGGCAA+TGG + Chr3:65566034-65566053 None:intergenic 35.0%
!! TGTTTTTGCTTCGTCTTCTT+CGG + Chr3:65565171-65565190 None:intergenic 35.0%
!! TTGTTATTTGGTGAGTCCAT+TGG - Chr3:65566587-65566606 MsG0380015129.01.T01:intron 35.0%
!!! GTTGCTTTTGCTACTTTTAG+AGG - Chr3:65565368-65565387 MsG0380015129.01.T01:intron 35.0%
!!! TAAAGTTTTGGGTAAGAGTG+TGG - Chr3:65566040-65566059 MsG0380015129.01.T01:intron 35.0%
!!! TGATTTACCGGTGGTTTTTT+TGG + Chr3:65565081-65565100 None:intergenic 35.0%
!!! TGTTGCTTGTTTTGACTATC+TGG - Chr3:65566503-65566522 MsG0380015129.01.T01:intron 35.0%
!!! TTGTTGCTGCTTTGTTTTGT+TGG - Chr3:65565927-65565946 MsG0380015129.01.T01:intron 35.0%
!!! TTTTTTTGGAGCATGGAATG+CGG + Chr3:65565067-65565086 None:intergenic 35.0%
AAAATGGCACGAACTCGAAT+TGG - Chr3:65568734-65568753 MsG0380015129.01.T01:CDS 40.0%
AAATGGCACGAACTCGAATT+GGG - Chr3:65568735-65568754 MsG0380015129.01.T01:CDS 40.0%
AAGAATCGTGAATGCCACAA+GGG + Chr3:65567602-65567621 None:intergenic 40.0%
AAGTGTGAATTTGGGTGTGT+TGG - Chr3:65567298-65567317 MsG0380015129.01.T01:intron 40.0%
ACTAGAAATGGAGGAAACGT+TGG - Chr3:65565982-65566001 MsG0380015129.01.T01:intron 40.0%
AGTTGCTCCCATCAAATGAT+AGG + Chr3:65566938-65566957 None:intergenic 40.0%
ATGGCTTAGAGGAAAAGTTG+GGG + Chr3:65566252-65566271 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - Chr3:65567043-65567062 MsG0380015129.01.T01:intron 40.0%
CATTGGGGACAGTTGTAAAA+TGG - Chr3:65567894-65567913 MsG0380015129.01.T01:intron 40.0%
CCATAGATTACTGTTACGCT+AGG - Chr3:65568923-65568942 MsG0380015129.01.T01:CDS 40.0%
CCGAAAATTGAGGCAAACAT+TGG + Chr3:65568193-65568212 None:intergenic 40.0%
CCTAGCGTAACAGTAATCTA+TGG + Chr3:65568926-65568945 None:intergenic 40.0%
CGAAAAGACGCAACGAAAAA+AGG + Chr3:65565323-65565342 None:intergenic 40.0%
CTACATCCCTTAAGGTTACA+AGG + Chr3:65567865-65567884 None:intergenic 40.0%
GATGGCTTAGAGGAAAAGTT+GGG + Chr3:65566253-65566272 None:intergenic 40.0%
GCTAACAGCACTTCCAAAAA+TGG + Chr3:65567698-65567717 None:intergenic 40.0%
GTACAGTTCAACGGATGTAT+TGG - Chr3:65567657-65567676 MsG0380015129.01.T01:intron 40.0%
GTTGCTCCCATCAAATGATA+GGG + Chr3:65566937-65566956 None:intergenic 40.0%
TAACAATGGGAAAGAGTTGC+CGG - Chr3:65568224-65568243 MsG0380015129.01.T01:intron 40.0%
TAAGAATCGTGAATGCCACA+AGG + Chr3:65567603-65567622 None:intergenic 40.0%
TACCTGCCCTATCATTTGAT+GGG - Chr3:65566928-65566947 MsG0380015129.01.T01:CDS 40.0%
TATTGCAGCTACAGTAACAC+TGG + Chr3:65568633-65568652 None:intergenic 40.0%
TCACAGAAAGGAAAAGAGAG+AGG + Chr3:65567776-65567795 None:intergenic 40.0%
TGAAAGGTCTCTCGTTGTTT+AGG - Chr3:65567504-65567523 MsG0380015129.01.T01:intron 40.0%
TGATTCACAACCTTTAACGG+TGG - Chr3:65566550-65566569 MsG0380015129.01.T01:intron 40.0%
TTACCTGCCCTATCATTTGA+TGG - Chr3:65566927-65566946 MsG0380015129.01.T01:CDS 40.0%
TTATCACCTGTACAGCTTGT+TGG - Chr3:65568605-65568624 MsG0380015129.01.T01:CDS 40.0%
TTCCAAAAATGGACGTGTAG+AGG + Chr3:65567687-65567706 None:intergenic 40.0%
TTGCAGCATATGGTTATTGG+TGG - Chr3:65567571-65567590 MsG0380015129.01.T01:intron 40.0%
TTGTAACGCAAAAAGGCTTG+AGG + Chr3:65567247-65567266 None:intergenic 40.0%
! AAGCTTACATTTAGGGTCAG+AGG - Chr3:65565893-65565912 MsG0380015129.01.T01:intron 40.0%
! AAGGTGTCAGTTCAGTGTTA+AGG - Chr3:65567833-65567852 MsG0380015129.01.T01:intron 40.0%
! ATTGGGAATGCTAGTGCTTT+TGG - Chr3:65568752-65568771 MsG0380015129.01.T01:CDS 40.0%
! CATGATAGGATCAGAGTACT+TGG + Chr3:65567045-65567064 None:intergenic 40.0%
! TATCACCTGTACAGCTTGTT+GGG - Chr3:65568606-65568625 MsG0380015129.01.T01:CDS 40.0%
!! ATCCAAGCATTGAAACCAGA+AGG + Chr3:65565404-65565423 None:intergenic 40.0%
!! CTTATTTGGTGCACATTGGA+TGG - Chr3:65566188-65566207 MsG0380015129.01.T01:intron 40.0%
!! CTTATTTGGTGCACATTGGA+TGG + Chr3:65566207-65566188 None:intergenic 40.0%
!! GGATTCTATTGATTTACCGG+TGG + Chr3:65565090-65565109 None:intergenic 40.0%
!! TACCTTCTGGTTTCAATGCT+TGG - Chr3:65565399-65565418 MsG0380015129.01.T01:intron 40.0%
!! TTTGGAAGTGCTGTTAGCTA+TGG - Chr3:65567700-65567719 MsG0380015129.01.T01:intron 40.0%
!!! CTTGTTTTGACTATCTGGCA+TGG - Chr3:65566508-65566527 MsG0380015129.01.T01:intron 40.0%
!!! GATGCTGAGATTTTTTGTGG+TGG + Chr3:65564887-65564906 None:intergenic 40.0%
!!! TTCGTGCCATTTTTAACGCT+GGG + Chr3:65568727-65568746 None:intergenic 40.0%
AACAATGAGCCTGCTGTAAG+TGG - Chr3:65567622-65567641 MsG0380015129.01.T01:intron 45.0%
AACAATGGGAAAGAGTTGCC+GGG - Chr3:65568225-65568244 MsG0380015129.01.T01:intron 45.0%
ACAATGAGCCTGCTGTAAGT+GGG - Chr3:65567623-65567642 MsG0380015129.01.T01:intron 45.0%
AGAATCGTGAATGCCACAAG+GGG + Chr3:65567601-65567620 None:intergenic 45.0%
AGAGGAAAAGTTGGGGATTC+TGG + Chr3:65566245-65566264 None:intergenic 45.0%
AGAGGAAGAGCTTTACCTTC+TGG - Chr3:65565386-65565405 MsG0380015129.01.T01:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - Chr3:65567054-65567073 MsG0380015129.01.T01:intron 45.0%
ATCTGGCATGGATATATCGC+AGG - Chr3:65566520-65566539 MsG0380015129.01.T01:intron 45.0%
CAAACATGTTGGGGATTCTG+GGG + Chr3:65566119-65566138 None:intergenic 45.0%
CAACTATGATCAGGGACTCA+GGG + Chr3:65567339-65567358 None:intergenic 45.0%
CCAAACATGTTGGGGATTCT+GGG + Chr3:65566120-65566139 None:intergenic 45.0%
CCAGAATCCCCAACATGTTT+GGG - Chr3:65566118-65566137 MsG0380015129.01.T01:intron 45.0%
CCATGCTCCAAAAAAACCAC+CGG - Chr3:65565071-65565090 MsG0380015129.01.T01:three_prime_UTR 45.0%
CTCGTTGTTTAGGAACTCTC+TGG - Chr3:65567514-65567533 MsG0380015129.01.T01:intron 45.0%
GCAACAAGAAAAAACCCAGC+TGG + Chr3:65565353-65565372 None:intergenic 45.0%
GCAGTCTTACCCGAAAATTG+AGG + Chr3:65568203-65568222 None:intergenic 45.0%
GCAGTTCCCCAGAAAAAGAA+CGG + Chr3:65565263-65565282 None:intergenic 45.0%
GGATGGCTTAGAGGAAAAGT+TGG + Chr3:65566254-65566273 None:intergenic 45.0%
GGCAACTCTTTCCCATTGTT+AGG + Chr3:65568225-65568244 None:intergenic 45.0%
GGGTAAGACTGCCTAACAAT+GGG - Chr3:65568211-65568230 MsG0380015129.01.T01:intron 45.0%
GTGGAAGAAGTTGGGAATTG+AGG + Chr3:65565023-65565042 None:intergenic 45.0%
TCCTATCATGGCAACTGGAT+GGG - Chr3:65567055-65567074 MsG0380015129.01.T01:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - Chr3:65567050-65567069 MsG0380015129.01.T01:intron 45.0%
TGTGAGAGGTGAAAGAGTAG+CGG + Chr3:65564998-65565017 None:intergenic 45.0%
TTAAGACTCCCACTTACAGC+AGG + Chr3:65567634-65567653 None:intergenic 45.0%
TTCAGGGGTTTCTTGCTGAA+GGG - Chr3:65565462-65565481 MsG0380015129.01.T01:intron 45.0%
TTCTGGCAGTCTTTGCATTC+TGG + Chr3:65566323-65566342 None:intergenic 45.0%
TTGCTTCGTCTTCTTCGGTT+AGG + Chr3:65565166-65565185 None:intergenic 45.0%
TTGTGCTTGTGATGCATTGC+AGG - Chr3:65568130-65568149 MsG0380015129.01.T01:intron 45.0%
TTTCAGGGGTTTCTTGCTGA+AGG - Chr3:65565461-65565480 MsG0380015129.01.T01:intron 45.0%
! AAGAGGCATGGACATCTGAA+AGG - Chr3:65567488-65567507 MsG0380015129.01.T01:intron 45.0%
! ATGGAGTGGTGGAAGAAGTT+GGG + Chr3:65565031-65565050 None:intergenic 45.0%
! CAGAAGACTTCAGCTGGTTT+GGG - Chr3:65565488-65565507 MsG0380015129.01.T01:intron 45.0%
! CTCCTCTACACGTCCATTTT+TGG - Chr3:65567682-65567701 MsG0380015129.01.T01:intron 45.0%
! CTTACATTTAGGGTCAGAGG+TGG - Chr3:65565896-65565915 MsG0380015129.01.T01:intron 45.0%
! GTGTGGTGTCTCTCTTTTAG+CGG - Chr3:65566057-65566076 MsG0380015129.01.T01:CDS 45.0%
! TGTCCCACATCGACTAGAAA+TGG - Chr3:65565970-65565989 MsG0380015129.01.T01:intron 45.0%
! TGTGGTGTCTCTCTTTTAGC+GGG - Chr3:65566058-65566077 MsG0380015129.01.T01:CDS 45.0%
! TTAGGAACTCTCTGGAAGCT+TGG - Chr3:65567522-65567541 MsG0380015129.01.T01:intron 45.0%
!! ATCACCTGTACAGCTTGTTG+GGG - Chr3:65568607-65568626 MsG0380015129.01.T01:CDS 45.0%
!! CCTCCATTTCTAGTCGATGT+GGG + Chr3:65565976-65565995 None:intergenic 45.0%
!! CGTAGGACTTGTGTTACTTG+AGG - Chr3:65566643-65566662 MsG0380015129.01.T01:intron 45.0%
!! CTTTTTCTGGGGAACTGCAA+TGG - Chr3:65565265-65565284 MsG0380015129.01.T01:exon 45.0%
!! GGGATTCATATTTGGTGCAC+CGG + Chr3:65566232-65566251 None:intergenic 45.0%
!! TCCTCCATTTCTAGTCGATG+TGG + Chr3:65565977-65565996 None:intergenic 45.0%
!!! GTTCGTGCCATTTTTAACGC+TGG + Chr3:65568728-65568747 None:intergenic 45.0%
AACTCCACTCACTTCCATCG+TGG - Chr3:65564908-65564927 MsG0380015129.01.T01:three_prime_UTR 50.0%
AACTTCTCACTGTGGGGAAG+TGG - Chr3:65566954-65566973 MsG0380015129.01.T01:CDS 50.0%
ACCCATCCAGTTGCCATGAT+AGG + Chr3:65567059-65567078 None:intergenic 50.0%
ACTTCTCACTGTGGGGAAGT+GGG - Chr3:65566955-65566974 MsG0380015129.01.T01:CDS 50.0%
AGAATCCACCAACCTCGAGT+TGG - Chr3:65565103-65565122 MsG0380015129.01.T01:three_prime_UTR 50.0%
ATCGAAGAGACTGTGCCTTG+GGG - Chr3:65565205-65565224 MsG0380015129.01.T01:three_prime_UTR 50.0%
ATCTACCAACTCGAGGTTGG+TGG + Chr3:65565111-65565130 None:intergenic 50.0%
ATGCGGAAACGGAGAGAAGA+TGG + Chr3:65565050-65565069 None:intergenic 50.0%
ATGGGAGCAACTTCTCACTG+TGG - Chr3:65566946-65566965 MsG0380015129.01.T01:CDS 50.0%
ATTGGAGTTGTTGGAGCTGC+CGG - Chr3:65566605-65566624 MsG0380015129.01.T01:intron 50.0%
CAAGCCTCTTACTGCACAGA+TGG - Chr3:65568875-65568894 MsG0380015129.01.T01:CDS 50.0%
CAGTTGGCACTGTCATGGTT+CGG - Chr3:65567012-65567031 MsG0380015129.01.T01:CDS 50.0%
CATCGAAGAGACTGTGCCTT+GGG - Chr3:65565204-65565223 MsG0380015129.01.T01:three_prime_UTR 50.0%
CCCAAACATGTTGGGGATTC+TGG + Chr3:65566121-65566140 None:intergenic 50.0%
CCCAGAATCCCCAACATGTT+TGG - Chr3:65566117-65566136 MsG0380015129.01.T01:intron 50.0%
CGGGTAAGACTGCCTAACAA+TGG - Chr3:65568210-65568229 MsG0380015129.01.T01:intron 50.0%
CTCCCATCAAATGATAGGGC+AGG + Chr3:65566933-65566952 None:intergenic 50.0%
GAAACGGAGAGAAGATGGAG+TGG + Chr3:65565045-65565064 None:intergenic 50.0%
GAATCGTGAATGCCACAAGG+GGG + Chr3:65567600-65567619 None:intergenic 50.0%
GAGGAAATGCCGGTGACAAA+AGG + Chr3:65568474-65568493 None:intergenic 50.0%
GCAACTATGATCAGGGACTC+AGG + Chr3:65567340-65567359 None:intergenic 50.0%
GCAAGTACAGCCACCGTTAA+AGG + Chr3:65566563-65566582 None:intergenic 50.0%
GCAATCTACCAACTCGAGGT+TGG + Chr3:65565114-65565133 None:intergenic 50.0%
GCAGAAGACTTCAGCTGGTT+TGG - Chr3:65565487-65565506 MsG0380015129.01.T01:intron 50.0%
GGTGAGTCCATTGGAGTTGT+TGG - Chr3:65566596-65566615 MsG0380015129.01.T01:intron 50.0%
GTGCACATTGGATGGCTTAG+AGG + Chr3:65566215-65566196 None:intergenic 50.0%
TCATCGAAGAGACTGTGCCT+TGG - Chr3:65565203-65565222 MsG0380015129.01.T01:three_prime_UTR 50.0%
TCTGCCATCTGTGCAGTAAG+AGG + Chr3:65568882-65568901 None:intergenic 50.0%
TGGAGCATGGAATGCGGAAA+CGG + Chr3:65565061-65565080 None:intergenic 50.0%
TGGGAGCAACTTCTCACTGT+GGG - Chr3:65566947-65566966 MsG0380015129.01.T01:CDS 50.0%
TTGGTAGATTGCGTCGGAAC+AGG - Chr3:65565122-65565141 MsG0380015129.01.T01:three_prime_UTR 50.0%
! CCCACATCGACTAGAAATGG+AGG - Chr3:65565973-65565992 MsG0380015129.01.T01:intron 50.0%
! GATGGAGTGGTGGAAGAAGT+TGG + Chr3:65565032-65565051 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - Chr3:65565446-65565465 MsG0380015129.01.T01:intron 50.0%
! TCGATGCTGCTTGCTTTCAG+GGG - Chr3:65565447-65565466 MsG0380015129.01.T01:intron 50.0%
! TGGGAATTGAGGAGTGTGAG+AGG + Chr3:65565012-65565031 None:intergenic 50.0%
! TTTCTGGGGAACTGCAATGG+TGG - Chr3:65565268-65565287 MsG0380015129.01.T01:exon 50.0%
!! CTCGAGTTGGTAGATTGCGT+CGG - Chr3:65565116-65565135 MsG0380015129.01.T01:three_prime_UTR 50.0%
!!! CCGGTGGTTTTTTTGGAGCA+TGG + Chr3:65565074-65565093 None:intergenic 50.0%
AAGGGAGTGGAGTAGCACCA+CGG + Chr3:65564945-65564964 None:intergenic 55.0%
ACGGAGAGAAGATGGAGTGG+TGG + Chr3:65565042-65565061 None:intergenic 55.0%
AGAGGTGAAAGAGTAGCGGC+GGG + Chr3:65564994-65565013 None:intergenic 55.0%
ATGGCCACGATGGAAGTGAG+TGG + Chr3:65564915-65564934 None:intergenic 55.0%
CATGGCAGTTGGCACTGTCA+TGG - Chr3:65567007-65567026 MsG0380015129.01.T01:CDS 55.0%
CGACGCAATCTACCAACTCG+AGG + Chr3:65565118-65565137 None:intergenic 55.0%
CTTCCCATAACGCTTCCCCA+AGG + Chr3:65565223-65565242 None:intergenic 55.0%
CTTCTCACTGTGGGGAAGTG+GGG - Chr3:65566956-65566975 MsG0380015129.01.T01:CDS 55.0%
GAGAGGTGAAAGAGTAGCGG+CGG + Chr3:65564995-65565014 None:intergenic 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - Chr3:65566989-65567008 MsG0380015129.01.T01:CDS 55.0%
GGCAGCTCCAACAACTCCAA+TGG + Chr3:65566606-65566625 None:intergenic 55.0%
GGGAGCAACTTCTCACTGTG+GGG - Chr3:65566948-65566967 MsG0380015129.01.T01:CDS 55.0%
GGGTTGCAGAAGACTTCAGC+TGG - Chr3:65565482-65565501 MsG0380015129.01.T01:intron 55.0%
TACGACGCCAAGTACAAGCC+CGG + Chr3:65566627-65566646 None:intergenic 55.0%
TTGGAGTTGTTGGAGCTGCC+GGG - Chr3:65566606-65566625 MsG0380015129.01.T01:intron 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - Chr3:65565445-65565464 MsG0380015129.01.T01:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - Chr3:65567585-65567604 MsG0380015129.01.T01:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - Chr3:65567015-65567034 MsG0380015129.01.T01:CDS 55.0%
!! CGGCAATGGGCTAAACGTCT+AGG + Chr3:65566085-65566104 None:intergenic 55.0%
!! CTTGGGGAAGCGTTATGGGA+AGG - Chr3:65565221-65565240 MsG0380015129.01.T01:three_prime_UTR 55.0%
!! GTGCCTTGGGGAAGCGTTAT+GGG - Chr3:65565217-65565236 MsG0380015129.01.T01:three_prime_UTR 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - Chr3:65567016-65567035 MsG0380015129.01.T01:CDS 55.0%
!! TGTGCCTTGGGGAAGCGTTA+TGG - Chr3:65565216-65565235 MsG0380015129.01.T01:three_prime_UTR 55.0%
CTGGCCCCAACAAGCTGTAC+AGG + Chr3:65568614-65568633 None:intergenic 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - Chr3:65566996-65567015 MsG0380015129.01.T01:CDS 60.0%
GGGCTTGTACTTGGCGTCGT+AGG - Chr3:65566626-65566645 MsG0380015129.01.T01:intron 60.0%
!! ATTCTGGGGAGCGCTTGGAG+CGG + Chr3:65566105-65566124 None:intergenic 60.0%
CACTGTGGGGAAGTGGGGAG+TGG - Chr3:65566961-65566980 MsG0380015129.01.T01:CDS 65.0%
GAAAGAGTAGCGGCGGGTGG+TGG + Chr3:65564988-65565007 None:intergenic 65.0%
GGAGCTGCCGGGCTTGTACT+TGG - Chr3:65566617-65566636 MsG0380015129.01.T01:intron 65.0%
GGTGAAAGAGTAGCGGCGGG+TGG + Chr3:65564991-65565010 None:intergenic 65.0%
GTAGCACCACGGCGACAGCA+TGG + Chr3:65564934-65564953 None:intergenic 65.0%
TGTGGGGAAGTGGGGAGTGG+TGG - Chr3:65566964-65566983 MsG0380015129.01.T01:CDS 65.0%
! GGAGCGCTTGGAGCGGCAAT+GGG + Chr3:65566098-65566117 None:intergenic 65.0%
! GTTGCGGTGACGGCGGTGAA+GGG + Chr3:65564963-65564982 None:intergenic 65.0%
!! GGTGGTGGTGGTTGCGGTGA+CGG + Chr3:65564973-65564992 None:intergenic 65.0%
!! TGGGGATTCTGGGGAGCGCT+TGG + Chr3:65566110-65566129 None:intergenic 65.0%
CGGCGACAGCATGGCCACGA+TGG + Chr3:65564925-65564944 None:intergenic 70.0%
TCGTGGCCATGCTGTCGCCG+TGG - Chr3:65564925-65564944 MsG0380015129.01.T01:three_prime_UTR 70.0%
! AGAGTAGCGGCGGGTGGTGG+TGG + Chr3:65564985-65565004 None:intergenic 70.0%
! GGTGACGGCGGTGAAGGGAG+TGG + Chr3:65564958-65564977 None:intergenic 70.0%
! GGTGGTGGTTGCGGTGACGG+CGG + Chr3:65564970-65564989 None:intergenic 70.0%
! GGTTGCGGTGACGGCGGTGA+AGG + Chr3:65564964-65564983 None:intergenic 70.0%
!! GGGAGCGCTTGGAGCGGCAA+TGG + Chr3:65566099-65566118 None:intergenic 70.0%
!! GCGGCGGGTGGTGGTGGTTG+CGG + Chr3:65564979-65564998 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 65564867 65569097 65564867 ID=MsG0380015129.01;Name=MsG0380015129.01
Chr3 mRNA 65564867 65569097 65564867 ID=MsG0380015129.01.T01;Parent=MsG0380015129.01;Name=MsG0380015129.01.T01;_AED=0.45;_eAED=0.47;_QI=66|0.66|0.71|1|0.5|0.42|7|412|410
Chr3 exon 65564867 65565381 65564867 ID=MsG0380015129.01.T01:exon:22785;Parent=MsG0380015129.01.T01
Chr3 exon 65565752 65565812 65565752 ID=MsG0380015129.01.T01:exon:22784;Parent=MsG0380015129.01.T01
Chr3 exon 65566042 65566079 65566042 ID=MsG0380015129.01.T01:exon:22783;Parent=MsG0380015129.01.T01
Chr3 exon 65566212 65566387 65566212 ID=MsG0380015129.01.T01:exon:22782;Parent=MsG0380015129.01.T01
Chr3 exon 65566888 65567037 65566888 ID=MsG0380015129.01.T01:exon:22781;Parent=MsG0380015129.01.T01
Chr3 exon 65567300 65567422 65567300 ID=MsG0380015129.01.T01:exon:22780;Parent=MsG0380015129.01.T01
Chr3 exon 65568450 65569097 65568450 ID=MsG0380015129.01.T01:exon:22779;Parent=MsG0380015129.01.T01
Chr3 five_prime_UTR 65569032 65569097 65569032 ID=MsG0380015129.01.T01:five_prime_utr;Parent=MsG0380015129.01.T01
Chr3 CDS 65568450 65569031 65568450 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 CDS 65567300 65567422 65567300 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 CDS 65566888 65567037 65566888 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 CDS 65566212 65566387 65566212 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 CDS 65566042 65566079 65566042 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 CDS 65565752 65565812 65565752 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 CDS 65565279 65565381 65565279 ID=MsG0380015129.01.T01:cds;Parent=MsG0380015129.01.T01
Chr3 three_prime_UTR 65564867 65565278 65564867 ID=MsG0380015129.01.T01:three_prime_utr;Parent=MsG0380015129.01.T01
Gene Sequence

>MsG0380015129.01.T01

ATGCTGTCGCCGTGGTGCTACTCCACTCCCTTCACCGCCGTCACCGCAACCACCACCACCCGCCGCTACTCTTTCACCTCTCACACTCCTCAATTCCCAACTTCTTCCACCACTCCATCTTCTCTCCGTTTCCGCATTCCATGCTCCAAAAAAACCACCGGTAAATCAATAGAATCCACCAACCTCGAGTTGGTAGATTGCGTCGGAACAGGACAAAATGTAGAGTGTCTCCTAACCGAAGAAGACGAAGCAAAAACAAAAGATGAATCATCATCGAAGAGACTGTGCCTTGGGGAAGCGTTATGGGAAGGTGCAGTGTTAATATCACCGTTCTTTTTCTGGGGAACTGCAATGGTGGCGATGAAAGAAGTGATTCCTAATTACGGTCCTTTTTTCGTTGCGTCTTTTCGTTTAATTCCAGCTGGGTTTTTTCTTGTTGCTTTTGCTACTTTTAGAGGAAGAGCTTTACCTTCTGGTTTCAATGCTTGGATTTCTATCGCAATATTCGCACTCGTCGATGCTGCTTGCTTTCAGGGGTTTCTTGCTGAAGGGTTGCAGAAGACTTCAGCTGGTTTGGGCAGTGTTATTATTGATTCACAACCTTTAACGGTGGCTGTACTTGCTGCTTTGTTATTTGGTGAGTCCATTGGAGTTGTTGGAGCTGCCGGGCTTGTACTTGGCGTCGTAGGACTTGTGTTACTTGAGTTACCTGCCCTATCATTTGATGGGAGCAACTTCTCACTGTGGGGAAGTGGGGAGTGGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTCACGATTCTTAACAATGAGCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAACGGATGTATTGGCACTCCTCTACACGTCCATTTTTGGAAGTGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTATTTTAGATCACATTGGGGACAGTTGTAAAATGGTTATTAGTAGCTTGACAAAGCTCAGTTCACTTACATTTCTAACCCCAATGTTTGCCTCAATTTTCGGGTTTTTGTATCTCGGTGAGACATTATCACCTGTACAGCTTGTTGGGGCCAGTGTTACTGTAGCTGCAATATACATGGTTAACTTCAGAAACACTTCAGAATGA

Protein sequence

>MsG0380015129.01.T01

MLSPWCYSTPFTAVTATTTTRRYSFTSHTPQFPTSSTTPSSLRFRIPCSKKTTGKSIESTNLELVDCVGTGQNVECLLTEEDEAKTKDESSSKRLCLGEALWEGAVLISPFFFWGTAMVAMKEVIPNYGPFFVASFRLIPAGFFLVAFATFRGRALPSGFNAWISIAIFALVDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAVLAALLFGESIGVVGAAGLVLGVVGLVLLELPALSFDGSNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVAFTILNNEPAVSGSLKEYSSTDVLALLYTSIFGSAVSYGVFFYSATKGILDHIGDSCKMVISSLTKLSSLTFLTPMFASIFGFLYLGETLSPVQLVGASVTVAAIYMVNFRNTSE*