Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006049.01.T01 | XP_013470331.1 | 95.604 | 182 | 7 | 1 | 13 | 193 | 1 | 182 | 2.80E-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006049.01.T01 | Q41001 | 39.496 | 119 | 64 | 3 | 29 | 141 | 7 | 123 | 9.06E-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006049.01.T01 | I3RZA8 | 95.604 | 182 | 7 | 1 | 13 | 193 | 1 | 182 | 1.34e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0180006049.01 | 0.807360 | 5.249879e-50 | 2.918160e-47 |
| MsG0180001687.01 | MsG0180006049.01 | 0.803761 | 2.988176e-49 | 1.514149e-46 |
| MsG0180003932.01 | MsG0180006049.01 | 0.800710 | 1.268691e-48 | 5.947924e-46 |
| MsG0180004152.01 | MsG0180006049.01 | 0.800168 | 1.636013e-48 | 7.565379e-46 |
| MsG0180004481.01 | MsG0180006049.01 | 0.804804 | 1.811568e-49 | 9.429687e-47 |
| MsG0180004482.01 | MsG0180006049.01 | 0.800032 | 1.743009e-48 | 8.032648e-46 |
| MsG0180005049.01 | MsG0180006049.01 | 0.837102 | 6.337175e-57 | 8.147071e-54 |
| MsG0180005445.01 | MsG0180006049.01 | 0.806023 | 1.005886e-49 | 5.402340e-47 |
| MsG0180005575.01 | MsG0180006049.01 | 0.817342 | 3.465991e-52 | 2.517453e-49 |
| MsG0180006049.01 | MsG0280008615.01 | 0.809454 | 1.876925e-50 | 1.102462e-47 |
| MsG0180006049.01 | MsG0380013183.01 | 0.810391 | 1.180181e-50 | 7.104752e-48 |
| MsG0180006049.01 | MsG0480021056.01 | 0.832807 | 7.655387e-56 | 8.650993e-53 |
| MsG0180006049.01 | MsG0480022054.01 | 0.822363 | 2.465134e-53 | 2.059107e-50 |
| MsG0180006049.01 | MsG0580024197.01 | 0.814824 | 1.265422e-51 | 8.579639e-49 |
| MsG0180006049.01 | MsG0580025587.01 | 0.808774 | 2.625822e-50 | 1.514523e-47 |
| MsG0180006049.01 | MsG0580028613.01 | -0.815141 | 1.076471e-51 | 7.360982e-49 |
| MsG0180006049.01 | MsG0580029736.01 | 0.804112 | 2.526110e-49 | 1.291606e-46 |
| MsG0180006049.01 | MsG0680030447.01 | 0.807034 | 6.155247e-50 | 3.392566e-47 |
| MsG0180006049.01 | MsG0680035888.01 | 0.819729 | 9.969430e-53 | 7.734339e-50 |
| MsG0180006049.01 | MsG0780037141.01 | 0.810708 | 1.007962e-50 | 6.120015e-48 |
| MsG0180006049.01 | MsG0780038603.01 | 0.800199 | 1.612002e-48 | 7.460327e-46 |
| MsG0180006049.01 | MsG0780039170.01 | 0.802116 | 6.536422e-49 | 3.175608e-46 |
| MsG0180006049.01 | MsG0780039443.01 | 0.825332 | 4.966993e-54 | 4.513844e-51 |
| MsG0180006049.01 | MsG0780041440.01 | 0.818225 | 2.190142e-52 | 1.629763e-49 |
| MsG0180006049.01 | MsG0880042324.01 | 0.819892 | 9.146270e-53 | 7.128363e-50 |
| MsG0180006049.01 | MsG0880047472.01 | 0.800461 | 1.426041e-48 | 6.643693e-46 |
| MsG0180006049.01 | MsG0880047473.01 | 0.807748 | 4.344454e-50 | 2.439420e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006049.01.T01 | MTR_1g112700 | 95.604 | 182 | 7 | 1 | 13 | 193 | 1 | 182 | 3.40e-128 | 358 |
| MsG0180006049.01.T01 | MTR_3g099580 | 40.196 | 102 | 59 | 2 | 40 | 141 | 22 | 121 | 1.32e-22 | 90.1 |
| MsG0180006049.01.T01 | MTR_3g099570 | 33.784 | 148 | 82 | 4 | 29 | 172 | 7 | 142 | 1.75e-20 | 84.7 |
| MsG0180006049.01.T01 | MTR_8g007020 | 36.585 | 123 | 72 | 4 | 20 | 140 | 2 | 120 | 3.01e-20 | 84.0 |
| MsG0180006049.01.T01 | MTR_8g007035 | 38.211 | 123 | 70 | 4 | 20 | 140 | 2 | 120 | 1.06e-19 | 82.8 |
| MsG0180006049.01.T01 | MTR_3g099680 | 36.134 | 119 | 70 | 3 | 29 | 142 | 7 | 124 | 4.65e-19 | 81.6 |
| MsG0180006049.01.T01 | MTR_8g089110 | 37.607 | 117 | 67 | 4 | 26 | 140 | 8 | 120 | 6.10e-19 | 79.0 |
| MsG0180006049.01.T01 | MTR_6g013200 | 36.667 | 120 | 72 | 3 | 25 | 141 | 14 | 132 | 1.70e-18 | 79.0 |
| MsG0180006049.01.T01 | MTR_3g099980 | 35.294 | 119 | 71 | 3 | 29 | 142 | 7 | 124 | 5.71e-18 | 78.6 |
| MsG0180006049.01.T01 | MTR_1g104800 | 32.773 | 119 | 73 | 3 | 24 | 140 | 9 | 122 | 7.13e-18 | 77.8 |
| MsG0180006049.01.T01 | MTR_1g090190 | 33.058 | 121 | 71 | 3 | 41 | 161 | 20 | 130 | 1.98e-17 | 76.3 |
| MsG0180006049.01.T01 | MTR_7g086280 | 30.894 | 123 | 80 | 2 | 25 | 145 | 7 | 126 | 3.49e-17 | 75.9 |
| MsG0180006049.01.T01 | MTR_5g006040 | 31.034 | 116 | 77 | 2 | 27 | 140 | 9 | 123 | 3.56e-17 | 75.9 |
| MsG0180006049.01.T01 | MTR_4g114870 | 37.624 | 101 | 58 | 2 | 44 | 140 | 191 | 290 | 1.09e-16 | 77.4 |
| MsG0180006049.01.T01 | MTR_4g114870 | 31.126 | 151 | 87 | 4 | 18 | 164 | 5 | 142 | 2.81e-16 | 76.3 |
| MsG0180006049.01.T01 | MTR_7g086230 | 29.268 | 123 | 82 | 2 | 25 | 145 | 7 | 126 | 2.56e-16 | 73.6 |
| MsG0180006049.01.T01 | MTR_1g105130 | 35.484 | 124 | 77 | 3 | 22 | 143 | 2 | 124 | 5.97e-16 | 72.0 |
| MsG0180006049.01.T01 | MTR_1g105120 | 35.484 | 124 | 77 | 3 | 22 | 143 | 2 | 124 | 5.97e-16 | 72.0 |
| MsG0180006049.01.T01 | MTR_6g080660 | 30.252 | 119 | 81 | 2 | 28 | 146 | 12 | 128 | 1.10e-15 | 72.4 |
| MsG0180006049.01.T01 | MTR_7g086160 | 34.821 | 112 | 70 | 2 | 19 | 130 | 4 | 112 | 2.83e-15 | 70.5 |
| MsG0180006049.01.T01 | MTR_8g088830 | 38.235 | 102 | 60 | 2 | 39 | 140 | 23 | 121 | 3.42e-15 | 68.9 |
| MsG0180006049.01.T01 | MTR_7g086100 | 33.333 | 123 | 75 | 3 | 25 | 143 | 7 | 126 | 5.24e-15 | 70.9 |
| MsG0180006049.01.T01 | MTR_7g086220 | 32.479 | 117 | 77 | 2 | 25 | 140 | 6 | 121 | 7.18e-15 | 69.3 |
| MsG0180006049.01.T01 | MTR_7g086140 | 33.929 | 112 | 70 | 2 | 19 | 130 | 4 | 111 | 7.25e-15 | 69.3 |
| MsG0180006049.01.T01 | MTR_7g086190 | 33.929 | 112 | 70 | 2 | 19 | 130 | 4 | 111 | 7.25e-15 | 69.3 |
| MsG0180006049.01.T01 | MTR_6g013420 | 33.607 | 122 | 77 | 3 | 22 | 141 | 16 | 135 | 8.69e-15 | 69.3 |
| MsG0180006049.01.T01 | MTR_4g007250 | 34.615 | 104 | 66 | 2 | 39 | 142 | 24 | 125 | 1.06e-14 | 68.9 |
| MsG0180006049.01.T01 | MTR_3g089035 | 37.755 | 98 | 57 | 3 | 41 | 138 | 30 | 123 | 1.45e-14 | 67.4 |
| MsG0180006049.01.T01 | MTR_8g463180 | 29.167 | 120 | 82 | 2 | 23 | 140 | 3 | 121 | 3.08e-14 | 69.7 |
| MsG0180006049.01.T01 | MTR_2g088990 | 31.897 | 116 | 73 | 4 | 28 | 139 | 6 | 119 | 9.90e-14 | 67.4 |
| MsG0180006049.01.T01 | MTR_7g086090 | 32.231 | 121 | 77 | 2 | 24 | 142 | 6 | 123 | 1.48e-13 | 67.4 |
| MsG0180006049.01.T01 | MTR_6g023760 | 33.981 | 103 | 65 | 3 | 39 | 140 | 21 | 121 | 1.97e-13 | 65.9 |
| MsG0180006049.01.T01 | MTR_3g089005 | 34.188 | 117 | 71 | 4 | 20 | 136 | 11 | 121 | 2.16e-13 | 64.3 |
| MsG0180006049.01.T01 | MTR_4g067200 | 26.230 | 122 | 85 | 2 | 28 | 144 | 12 | 133 | 3.88e-13 | 64.7 |
| MsG0180006049.01.T01 | MTR_4g066110 | 26.230 | 122 | 85 | 2 | 28 | 144 | 12 | 133 | 3.88e-13 | 64.7 |
| MsG0180006049.01.T01 | MTR_4g130780 | 29.078 | 141 | 87 | 4 | 24 | 159 | 9 | 141 | 1.17e-12 | 63.9 |
| MsG0180006049.01.T01 | MTR_6g013170 | 27.397 | 146 | 90 | 3 | 23 | 166 | 8 | 139 | 2.44e-12 | 62.8 |
| MsG0180006049.01.T01 | MTR_2g043730 | 32.773 | 119 | 76 | 3 | 22 | 140 | 10 | 124 | 3.27e-12 | 61.2 |
| MsG0180006049.01.T01 | MTR_2g090575 | 30.833 | 120 | 78 | 3 | 23 | 140 | 6 | 122 | 1.55e-11 | 62.4 |
| MsG0180006049.01.T01 | MTR_8g099220 | 29.268 | 123 | 80 | 3 | 25 | 141 | 7 | 128 | 4.70e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006049.01.T01 | AT2G31050 | 37.333 | 150 | 81 | 4 | 15 | 163 | 1 | 138 | 1.04e-23 | 93.6 |
| MsG0180006049.01.T01 | AT3G17675 | 34.454 | 119 | 73 | 2 | 26 | 140 | 10 | 127 | 8.10e-20 | 81.3 |
| MsG0180006049.01.T01 | AT5G26330 | 35.294 | 102 | 63 | 2 | 41 | 140 | 21 | 121 | 1.95e-18 | 79.3 |
| MsG0180006049.01.T01 | AT2G26720 | 35.878 | 131 | 81 | 3 | 15 | 144 | 1 | 129 | 7.14e-18 | 78.2 |
| MsG0180006049.01.T01 | AT2G32300 | 27.673 | 159 | 108 | 2 | 24 | 182 | 6 | 157 | 1.39e-17 | 78.6 |
| MsG0180006049.01.T01 | AT2G32300 | 27.673 | 159 | 108 | 2 | 24 | 182 | 36 | 187 | 1.89e-17 | 78.6 |
| MsG0180006049.01.T01 | AT1G72230 | 31.884 | 138 | 86 | 4 | 19 | 156 | 3 | 132 | 7.69e-17 | 75.1 |
| MsG0180006049.01.T01 | AT5G07475 | 28.767 | 146 | 100 | 3 | 23 | 166 | 9 | 152 | 1.39e-16 | 74.7 |
| MsG0180006049.01.T01 | AT2G02850 | 35.088 | 114 | 66 | 4 | 25 | 138 | 21 | 126 | 1.82e-16 | 72.8 |
| MsG0180006049.01.T01 | AT2G25060 | 28.767 | 146 | 94 | 4 | 27 | 163 | 14 | 158 | 2.91e-15 | 70.9 |
| MsG0180006049.01.T01 | AT5G15350 | 28.235 | 170 | 102 | 5 | 23 | 173 | 4 | 172 | 3.95e-15 | 70.1 |
| MsG0180006049.01.T01 | AT5G20230 | 30.645 | 124 | 82 | 2 | 44 | 164 | 25 | 147 | 3.82e-14 | 68.2 |
| MsG0180006049.01.T01 | AT1G22480 | 32.773 | 119 | 78 | 2 | 29 | 147 | 4 | 120 | 4.99e-14 | 67.4 |
| MsG0180006049.01.T01 | AT4G31840 | 27.273 | 154 | 97 | 5 | 20 | 162 | 3 | 152 | 5.68e-14 | 67.4 |
| MsG0180006049.01.T01 | AT3G60270 | 33.981 | 103 | 66 | 2 | 38 | 140 | 20 | 120 | 9.48e-14 | 67.0 |
| MsG0180006049.01.T01 | AT4G32490 | 26.667 | 120 | 85 | 2 | 23 | 140 | 10 | 128 | 2.66e-13 | 66.2 |
| MsG0180006049.01.T01 | AT2G27035 | 28.448 | 116 | 81 | 2 | 47 | 161 | 32 | 146 | 2.73e-13 | 65.1 |
| MsG0180006049.01.T01 | AT1G45063 | 32.800 | 125 | 75 | 4 | 24 | 143 | 9 | 129 | 3.48e-13 | 66.6 |
| MsG0180006049.01.T01 | AT1G17800 | 30.833 | 120 | 78 | 2 | 24 | 139 | 17 | 135 | 6.02e-13 | 63.5 |
| MsG0180006049.01.T01 | AT1G45063 | 32.800 | 125 | 75 | 4 | 24 | 143 | 9 | 129 | 8.04e-13 | 66.2 |
| MsG0180006049.01.T01 | AT3G27200 | 30.508 | 118 | 79 | 3 | 24 | 140 | 6 | 121 | 8.09e-13 | 63.9 |
| MsG0180006049.01.T01 | AT4G12880 | 31.624 | 117 | 76 | 3 | 27 | 141 | 12 | 126 | 1.22e-12 | 62.8 |
| MsG0180006049.01.T01 | AT5G53870 | 30.000 | 160 | 97 | 6 | 24 | 170 | 1 | 158 | 1.43e-12 | 65.5 |
| MsG0180006049.01.T01 | AT5G53870 | 30.000 | 160 | 97 | 6 | 24 | 170 | 1 | 158 | 1.76e-12 | 65.5 |
| MsG0180006049.01.T01 | AT4G28365 | 31.313 | 99 | 65 | 2 | 44 | 140 | 29 | 126 | 5.90e-12 | 62.4 |
| MsG0180006049.01.T01 | AT3G60280 | 32.039 | 103 | 68 | 2 | 38 | 140 | 18 | 118 | 8.11e-12 | 62.4 |
| MsG0180006049.01.T01 | AT3G20570 | 29.545 | 132 | 82 | 3 | 29 | 150 | 8 | 138 | 2.01e-11 | 60.8 |
| MsG0180006049.01.T01 | AT3G18590 | 29.839 | 124 | 76 | 5 | 24 | 140 | 7 | 126 | 4.56e-11 | 59.7 |
| MsG0180006049.01.T01 | AT2G44790 | 33.333 | 96 | 60 | 3 | 51 | 144 | 35 | 128 | 6.94e-11 | 59.3 |
Find 40 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTGATCACCATTTCTT+TGG | 0.227237 | 1:+99372381 | None:intergenic |
| TGCCTTGGAGGAATGAGGTT+TGG | 0.332332 | 1:-99371778 | MsG0180006049.01.T01:CDS |
| CCCATGTAGCATAATTTGTT+TGG | 0.336122 | 1:+99372248 | None:intergenic |
| GCCTTGGAGGAATGAGGTTT+GGG | 0.340464 | 1:-99371777 | MsG0180006049.01.T01:CDS |
| AGATCAAGTGGTTCTAAATA+AGG | 0.343342 | 1:-99371839 | MsG0180006049.01.T01:CDS |
| AAGTTAGTTCCTTTCGGAAC+TGG | 0.360694 | 1:-99371634 | MsG0180006049.01.T01:CDS |
| TTCTTACCTTTCCAAAGAAA+TGG | 0.367475 | 1:-99372392 | MsG0180006049.01.T01:CDS |
| TAAATAAGGTGAAGAGATAT+TGG | 0.384569 | 1:-99371825 | MsG0180006049.01.T01:CDS |
| TCTCAAAGATGGAGAGTGAT+TGG | 0.389696 | 1:-99371658 | MsG0180006049.01.T01:CDS |
| TTTAGCCGTGGAGATGTTCT+TGG | 0.401037 | 1:-99372211 | MsG0180006049.01.T01:intron |
| ATTGGGAAGTTAGTTCCTTT+CGG | 0.402044 | 1:-99371640 | MsG0180006049.01.T01:CDS |
| GATGGAGTTGGTTGAATTTG+TGG | 0.412161 | 1:+99371697 | None:intergenic |
| TGGTTCATTTGCAATATAGC+TGG | 0.431102 | 1:-99371805 | MsG0180006049.01.T01:CDS |
| TGGATTTAATGCACCGTCCA+TGG | 0.449414 | 1:+99371717 | None:intergenic |
| ATAGCTGGACATTGCCTTGG+AGG | 0.459542 | 1:-99371790 | MsG0180006049.01.T01:CDS |
| ATGGCTAGTGTTTATGCTGT+TGG | 0.480177 | 1:-99372292 | MsG0180006049.01.T01:CDS |
| CTCAAAGATGGAGAGTGATT+GGG | 0.483596 | 1:-99371657 | MsG0180006049.01.T01:CDS |
| ATTCTTGTATCTCTCAAAGA+TGG | 0.491476 | 1:-99371669 | MsG0180006049.01.T01:CDS |
| GACATTGCCTTGGAGGAATG+AGG | 0.494262 | 1:-99371783 | MsG0180006049.01.T01:CDS |
| TGATCACCATTTCTTTGGAA+AGG | 0.494858 | 1:+99372386 | None:intergenic |
| CAAGAATTTAGTGATGGAGT+TGG | 0.498793 | 1:+99371685 | None:intergenic |
| GCCAAACAAATTATGCTACA+TGG | 0.511548 | 1:-99372249 | MsG0180006049.01.T01:CDS |
| GAGATACAAGAATTTAGTGA+TGG | 0.532359 | 1:+99371679 | None:intergenic |
| CAACAATGGTACTAATTCCA+TGG | 0.540787 | 1:-99371734 | MsG0180006049.01.T01:CDS |
| AATATAGCTGGACATTGCCT+TGG | 0.550956 | 1:-99371793 | MsG0180006049.01.T01:CDS |
| CTGTTGGTGATCAAGATGAA+TGG | 0.566698 | 1:-99372276 | MsG0180006049.01.T01:CDS |
| AATAAGAATTGAGAGTATGA+AGG | 0.571197 | 1:+99372345 | None:intergenic |
| GTGTTGGCTAAGTATGAAAG+TGG | 0.577082 | 1:-99371865 | MsG0180006049.01.T01:CDS |
| GTCAAAGAAGATAGCAACAA+TGG | 0.584763 | 1:-99371748 | MsG0180006049.01.T01:CDS |
| TAATGTGTATGAAGTGAGAG+AGG | 0.584918 | 1:-99371920 | MsG0180006049.01.T01:CDS |
| CCAAACAAATTATGCTACAT+GGG | 0.597055 | 1:-99372248 | MsG0180006049.01.T01:CDS |
| AATAATAATCCAGTTCCGAA+AGG | 0.605908 | 1:+99371625 | None:intergenic |
| TGAAACAAGTAGTGGAGTGT+TGG | 0.609215 | 1:-99371881 | MsG0180006049.01.T01:CDS |
| AGATCATGTGAAACAAGTAG+TGG | 0.611448 | 1:-99371889 | MsG0180006049.01.T01:CDS |
| AATGGTACTAATTCCATGGA+CGG | 0.621827 | 1:-99371730 | MsG0180006049.01.T01:CDS |
| GAGAGATACAACTTTAGCCG+TGG | 0.623416 | 1:-99372223 | MsG0180006049.01.T01:CDS |
| TCCCAAACCTCATTCCTCCA+AGG | 0.624087 | 1:+99371776 | None:intergenic |
| TGAAAGTGGAGAAGATCAAG+TGG | 0.654735 | 1:-99371851 | MsG0180006049.01.T01:CDS |
| TACTACCAAGAACATCTCCA+CGG | 0.676544 | 1:+99372206 | None:intergenic |
| AAGAAGATGTGATGAAACAG+TGG | 0.725138 | 1:+99372410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAATTAAATATTTTT+TGG | - | Chr1:99372031-99372050 | MsG0180006049.01.T01:intron | 0.0% |
| !!! | AATATTTTTTGGTGTTGTAT+TGG | - | Chr1:99372042-99372061 | MsG0180006049.01.T01:intron | 20.0% |
| ! | AAGATAATGTTATGATCACA+TGG | + | Chr1:99371918-99371937 | None:intergenic | 25.0% |
| ! | TAAATAAGGTGAAGAGATAT+TGG | - | Chr1:99372190-99372209 | MsG0180006049.01.T01:intron | 25.0% |
| !! | AATAAGAATTGAGAGTATGA+AGG | + | Chr1:99371673-99371692 | None:intergenic | 25.0% |
| !! | ATCACATGGATATCTTTTAT+TGG | + | Chr1:99371904-99371923 | None:intergenic | 25.0% |
| !!! | ATAGTTTTCAAGTATGTGAA+GGG | - | Chr1:99372066-99372085 | MsG0180006049.01.T01:intron | 25.0% |
| !!! | TATAGTTTTCAAGTATGTGA+AGG | - | Chr1:99372065-99372084 | MsG0180006049.01.T01:intron | 25.0% |
| AATAATAATCCAGTTCCGAA+AGG | + | Chr1:99372393-99372412 | None:intergenic | 30.0% | |
| ATTCTTGTATCTCTCAAAGA+TGG | - | Chr1:99372346-99372365 | MsG0180006049.01.T01:CDS | 30.0% | |
| CCAAACAAATTATGCTACAT+GGG | - | Chr1:99371767-99371786 | MsG0180006049.01.T01:CDS | 30.0% | |
| GAGATACAAGAATTTAGTGA+TGG | + | Chr1:99372339-99372358 | None:intergenic | 30.0% | |
| TTCTTACCTTTCCAAAGAAA+TGG | - | Chr1:99371623-99371642 | MsG0180006049.01.T01:CDS | 30.0% | |
| ! | TTTTCTCTTGAATTGTGTCA+TGG | - | Chr1:99371704-99371723 | MsG0180006049.01.T01:CDS | 30.0% |
| !! | AGATCAAGTGGTTCTAAATA+AGG | - | Chr1:99372176-99372195 | MsG0180006049.01.T01:intron | 30.0% |
| !!! | TAGTTTTCAAGTATGTGAAG+GGG | - | Chr1:99372067-99372086 | MsG0180006049.01.T01:intron | 30.0% |
| AATGGTACTAATTCCATGGA+CGG | - | Chr1:99372285-99372304 | MsG0180006049.01.T01:CDS | 35.0% | |
| AGATCATGTGAAACAAGTAG+TGG | - | Chr1:99372126-99372145 | MsG0180006049.01.T01:intron | 35.0% | |
| ATTGGGAAGTTAGTTCCTTT+CGG | - | Chr1:99372375-99372394 | MsG0180006049.01.T01:CDS | 35.0% | |
| CAACAATGGTACTAATTCCA+TGG | - | Chr1:99372281-99372300 | MsG0180006049.01.T01:CDS | 35.0% | |
| GAAAGTGATCACCATTTCTT+TGG | + | Chr1:99371637-99371656 | None:intergenic | 35.0% | |
| GCCAAACAAATTATGCTACA+TGG | - | Chr1:99371766-99371785 | MsG0180006049.01.T01:CDS | 35.0% | |
| GTCAAAGAAGATAGCAACAA+TGG | - | Chr1:99372267-99372286 | MsG0180006049.01.T01:CDS | 35.0% | |
| TAATGTGTATGAAGTGAGAG+AGG | - | Chr1:99372095-99372114 | MsG0180006049.01.T01:intron | 35.0% | |
| TGGTTCATTTGCAATATAGC+TGG | - | Chr1:99372210-99372229 | MsG0180006049.01.T01:intron | 35.0% | |
| ! | CAAGAATTTAGTGATGGAGT+TGG | + | Chr1:99372333-99372352 | None:intergenic | 35.0% |
| ! | TGATCACCATTTCTTTGGAA+AGG | + | Chr1:99371632-99371651 | None:intergenic | 35.0% |
| !! | CCCATGTAGCATAATTTGTT+TGG | + | Chr1:99371770-99371789 | None:intergenic | 35.0% |
| AAGTTAGTTCCTTTCGGAAC+TGG | - | Chr1:99372381-99372400 | MsG0180006049.01.T01:CDS | 40.0% | |
| AATATAGCTGGACATTGCCT+TGG | - | Chr1:99372222-99372241 | MsG0180006049.01.T01:CDS | 40.0% | |
| ATGGCTAGTGTTTATGCTGT+TGG | - | Chr1:99371723-99371742 | MsG0180006049.01.T01:CDS | 40.0% | |
| CTCAAAGATGGAGAGTGATT+GGG | - | Chr1:99372358-99372377 | MsG0180006049.01.T01:CDS | 40.0% | |
| TACTACCAAGAACATCTCCA+CGG | + | Chr1:99371812-99371831 | None:intergenic | 40.0% | |
| TCTCAAAGATGGAGAGTGAT+TGG | - | Chr1:99372357-99372376 | MsG0180006049.01.T01:CDS | 40.0% | |
| TGAAAGTGGAGAAGATCAAG+TGG | - | Chr1:99372164-99372183 | MsG0180006049.01.T01:intron | 40.0% | |
| ! | GATGGAGTTGGTTGAATTTG+TGG | + | Chr1:99372321-99372340 | None:intergenic | 40.0% |
| ! | TGAAACAAGTAGTGGAGTGT+TGG | - | Chr1:99372134-99372153 | MsG0180006049.01.T01:intron | 40.0% |
| !! | CTGTTGGTGATCAAGATGAA+TGG | - | Chr1:99371739-99371758 | MsG0180006049.01.T01:CDS | 40.0% |
| !! | GTGTTGGCTAAGTATGAAAG+TGG | - | Chr1:99372150-99372169 | MsG0180006049.01.T01:intron | 40.0% |
| GAGAGATACAACTTTAGCCG+TGG | - | Chr1:99371792-99371811 | MsG0180006049.01.T01:CDS | 45.0% | |
| TGGATTTAATGCACCGTCCA+TGG | + | Chr1:99372301-99372320 | None:intergenic | 45.0% | |
| TTTAGCCGTGGAGATGTTCT+TGG | - | Chr1:99371804-99371823 | MsG0180006049.01.T01:CDS | 45.0% | |
| ATAGCTGGACATTGCCTTGG+AGG | - | Chr1:99372225-99372244 | MsG0180006049.01.T01:CDS | 50.0% | |
| GACATTGCCTTGGAGGAATG+AGG | - | Chr1:99372232-99372251 | MsG0180006049.01.T01:CDS | 50.0% | |
| GCCTTGGAGGAATGAGGTTT+GGG | - | Chr1:99372238-99372257 | MsG0180006049.01.T01:CDS | 50.0% | |
| TCCCAAACCTCATTCCTCCA+AGG | + | Chr1:99372242-99372261 | None:intergenic | 50.0% | |
| TGCCTTGGAGGAATGAGGTT+TGG | - | Chr1:99372237-99372256 | MsG0180006049.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 99371606 | 99372431 | 99371606 | ID=MsG0180006049.01;Name=MsG0180006049.01 |
| Chr1 | mRNA | 99371606 | 99372431 | 99371606 | ID=MsG0180006049.01.T01;Parent=MsG0180006049.01;Name=MsG0180006049.01.T01;_AED=0.51;_eAED=0.52;_QI=0|0|0|1|1|1|2|0|193 |
| Chr1 | exon | 99372212 | 99372431 | 99372212 | ID=MsG0180006049.01.T01:exon:9955;Parent=MsG0180006049.01.T01 |
| Chr1 | exon | 99371606 | 99371967 | 99371606 | ID=MsG0180006049.01.T01:exon:9954;Parent=MsG0180006049.01.T01 |
| Chr1 | CDS | 99372212 | 99372431 | 99372212 | ID=MsG0180006049.01.T01:cds;Parent=MsG0180006049.01.T01 |
| Chr1 | CDS | 99371606 | 99371967 | 99371606 | ID=MsG0180006049.01.T01:cds;Parent=MsG0180006049.01.T01 |
| Gene Sequence |
| Protein sequence |
