Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008106.01.T01 | XP_003594881.1 | 95.976 | 497 | 20 | 0 | 1 | 497 | 1 | 497 | 0 | 921 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008106.01.T01 | O49432 | 61.522 | 460 | 160 | 4 | 38 | 495 | 37 | 481 | 0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008106.01.T01 | G7INE9 | 95.976 | 497 | 20 | 0 | 1 | 497 | 1 | 497 | 0.0 | 921 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000139.01 | MsG0280008106.01 | 0.800655 | 1.301588e-48 | 6.094087e-46 |
| MsG0180004765.01 | MsG0280008106.01 | 0.802014 | 6.859130e-49 | 3.323807e-46 |
| MsG0180004802.01 | MsG0280008106.01 | 0.814005 | 1.919884e-51 | 1.273201e-48 |
| MsG0280006910.01 | MsG0280008106.01 | 0.840967 | 6.318717e-58 | 9.149272e-55 |
| MsG0280008106.01 | MsG0280008615.01 | 0.809850 | 1.543323e-50 | 9.160728e-48 |
| MsG0280008106.01 | MsG0280009421.01 | 0.824953 | 6.102532e-54 | 5.486424e-51 |
| MsG0280008106.01 | MsG0280010788.01 | 0.823883 | 1.089511e-53 | 9.500475e-51 |
| MsG0280008106.01 | MsG0280011065.01 | 0.809657 | 1.698230e-50 | 1.002938e-47 |
| MsG0280008106.01 | MsG0280011329.01 | 0.801464 | 8.895336e-49 | 4.250788e-46 |
| MsG0280008106.01 | MsG0380017543.01 | 0.800214 | 1.601099e-48 | 7.412781e-46 |
| MsG0280008106.01 | MsG0480021056.01 | 0.869633 | 2.675035e-66 | 1.010919e-62 |
| MsG0280008106.01 | MsG0480022054.01 | 0.816854 | 4.461832e-52 | 3.197784e-49 |
| MsG0280008106.01 | MsG0580026086.01 | 0.823632 | 1.247488e-53 | 1.080096e-50 |
| MsG0280008106.01 | MsG0680030880.01 | 0.800589 | 1.342320e-48 | 6.274276e-46 |
| MsG0280008106.01 | MsG0680030882.01 | 0.801746 | 7.784945e-49 | 3.746769e-46 |
| MsG0280008106.01 | MsG0680031264.01 | 0.800212 | 1.602064e-48 | 7.417010e-46 |
| MsG0280008106.01 | MsG0680031505.01 | 0.812249 | 4.663271e-51 | 2.950010e-48 |
| MsG0280008106.01 | MsG0780037141.01 | 0.800740 | 1.250463e-48 | 5.867330e-46 |
| MsG0280008106.01 | MsG0780038907.01 | 0.817366 | 3.422863e-52 | 2.487784e-49 |
| MsG0280008106.01 | MsG0880045164.01 | 0.828991 | 6.608903e-55 | 6.674937e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008106.01.T01 | MTR_2g035760 | 95.976 | 497 | 20 | 0 | 1 | 497 | 1 | 497 | 0.0 | 921 |
| MsG0280008106.01.T01 | MTR_6g015785 | 70.281 | 498 | 139 | 4 | 1 | 497 | 5 | 494 | 0.0 | 656 |
| MsG0280008106.01.T01 | MTR_4g094732 | 46.467 | 467 | 219 | 10 | 43 | 493 | 29 | 480 | 2.85e-139 | 410 |
| MsG0280008106.01.T01 | MTR_2g035790 | 51.878 | 426 | 185 | 7 | 82 | 493 | 69 | 488 | 1.52e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008106.01.T01 | AT4G20050 | 61.790 | 458 | 158 | 4 | 38 | 493 | 62 | 504 | 0.0 | 565 |
| MsG0280008106.01.T01 | AT4G20050 | 61.522 | 460 | 160 | 4 | 38 | 495 | 37 | 481 | 0.0 | 565 |
| MsG0280008106.01.T01 | AT4G20050 | 61.522 | 460 | 160 | 4 | 38 | 495 | 37 | 481 | 0.0 | 565 |
| MsG0280008106.01.T01 | AT4G20050 | 61.522 | 460 | 160 | 4 | 38 | 495 | 37 | 481 | 0.0 | 565 |
| MsG0280008106.01.T01 | AT4G20050 | 61.522 | 460 | 160 | 4 | 38 | 495 | 37 | 481 | 0.0 | 565 |
| MsG0280008106.01.T01 | AT4G20050 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 516 |
| MsG0280008106.01.T01 | AT4G20050 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 516 |
| MsG0280008106.01.T01 | AT4G20040 | 49.173 | 423 | 198 | 4 | 82 | 493 | 67 | 483 | 5.15e-136 | 402 |
Find 98 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTAATTGGTGTTTA+TGG | 0.186040 | 2:+25535704 | MsG0280008106.01.T01:CDS |
| AACTCTCAAGGACCTCTTAT+TGG | 0.199279 | 2:+25536843 | MsG0280008106.01.T01:CDS |
| GTTGTTTGTTTCATTGTAAT+TGG | 0.263362 | 2:+25535695 | MsG0280008106.01.T01:CDS |
| TGGTGTACATTGTTACAATA+AGG | 0.274737 | 2:+25537158 | MsG0280008106.01.T01:CDS |
| CATAGATTTCAACACAATAT+TGG | 0.278645 | 2:-25537328 | None:intergenic |
| TACAATAAGGCCACTGGATT+CGG | 0.316472 | 2:+25537171 | MsG0280008106.01.T01:CDS |
| TGCAACGGGGATGAATTTAA+AGG | 0.328386 | 2:+25537485 | MsG0280008106.01.T01:CDS |
| AGGTGTTGAAATTGTTCATT+TGG | 0.332781 | 2:+25537407 | MsG0280008106.01.T01:CDS |
| TTATTGGATTCAAACTTTAG+AGG | 0.335089 | 2:+25536859 | MsG0280008106.01.T01:CDS |
| AGTTTCTTATGTATGTTTCA+TGG | 0.352507 | 2:-25536975 | None:intergenic |
| ACATTTCTGATGGCATGATT+AGG | 0.372180 | 2:-25537636 | None:intergenic |
| ATGTTCCCAACGTTGGTTAC+CGG | 0.378304 | 2:-25536255 | None:intergenic |
| TTGATCAAGTTATTGTTGAT+AGG | 0.379420 | 2:+25537457 | MsG0280008106.01.T01:CDS |
| AGAATCATGTCTTGTTAAAG+AGG | 0.407306 | 2:-25535804 | None:intergenic |
| CTCTGCTGCTATAGGAATCA+TGG | 0.408545 | 2:+25537110 | MsG0280008106.01.T01:CDS |
| GTTGATAGGAACGTTGCAAC+GGG | 0.411337 | 2:+25537471 | MsG0280008106.01.T01:CDS |
| GCCACTGGATTCGGCGGTAC+CGG | 0.416083 | 2:+25537180 | MsG0280008106.01.T01:CDS |
| CAGTACTCATTAAGTTCAAC+AGG | 0.423624 | 2:+25537603 | MsG0280008106.01.T01:CDS |
| CAGAAAGTCACTCAAGTTAC+CGG | 0.424279 | 2:+25536236 | MsG0280008106.01.T01:CDS |
| CTAGAAATATGAAGTTGAAC+AGG | 0.426194 | 2:-25537285 | None:intergenic |
| GCTATAGGAATCATGGTAAC+TGG | 0.427357 | 2:+25537117 | MsG0280008106.01.T01:CDS |
| ACTTGATCAACTTGATGAAA+AGG | 0.437301 | 2:-25537444 | None:intergenic |
| TACATAAGAAACTCTTTCCT+TGG | 0.440272 | 2:+25536985 | MsG0280008106.01.T01:CDS |
| TCAATGATGTAGCCATCATT+AGG | 0.440588 | 2:-25536751 | None:intergenic |
| ATTTCTAGTAGTTTCTTCCT+TGG | 0.441880 | 2:+25537300 | MsG0280008106.01.T01:CDS |
| ATTGTAGATAACATGTTCTC+TGG | 0.444931 | 2:+25537375 | MsG0280008106.01.T01:CDS |
| TCCATCAAATATCCTTCGCT+TGG | 0.449157 | 2:-25536156 | None:intergenic |
| TGCAAGGGAATGGAACTTCA+TGG | 0.449669 | 2:+25537529 | MsG0280008106.01.T01:CDS |
| ATTACACATTTCACAACCAA+TGG | 0.452369 | 2:+25536934 | MsG0280008106.01.T01:CDS |
| TCCAAGCGAAGGATATTTGA+TGG | 0.464488 | 2:+25536155 | MsG0280008106.01.T01:CDS |
| GTGCTATCTGAATTTCCTGT+AGG | 0.469372 | 2:-25536093 | None:intergenic |
| GATGTCACATGGTATACTCT+TGG | 0.471851 | 2:-25536057 | None:intergenic |
| CCTACTAGGAAAATTTCTGA+TGG | 0.476121 | 2:+25535740 | MsG0280008106.01.T01:CDS |
| ATATCCTTCGCTTGGACCGT+TGG | 0.476727 | 2:-25536148 | None:intergenic |
| ACCTCAGCTGGCTGAGAAGA+AGG | 0.476976 | 2:-25535863 | None:intergenic |
| AGTTATGTACTCAAAATTGT+AGG | 0.480837 | 2:-25536824 | None:intergenic |
| CGCCTCCGGCGGTTATGTGT+TGG | 0.483145 | 2:-25537008 | None:intergenic |
| TAAAGGCTACTGTCGCGAAA+AGG | 0.486640 | 2:+25537502 | MsG0280008106.01.T01:CDS |
| TGATTGAATTATACCTCAGC+TGG | 0.489524 | 2:-25535875 | None:intergenic |
| TAAAGTTTGAATCCAATAAG+AGG | 0.490425 | 2:-25536855 | None:intergenic |
| TGCTATCTGAATTTCCTGTA+GGG | 0.496538 | 2:-25536092 | None:intergenic |
| TGTATGTTTCATGGCCACTT+TGG | 0.501309 | 2:-25536966 | None:intergenic |
| AAAAGGTCGTTGCAAGGGAA+TGG | 0.502322 | 2:+25537519 | MsG0280008106.01.T01:CDS |
| TGTTGGTTTCATGCTTCTTG+AGG | 0.510201 | 2:+25535673 | MsG0280008106.01.T01:CDS |
| TCCTGTAGGGTCTGCACCAT+AGG | 0.511417 | 2:-25536079 | None:intergenic |
| GGTGCACAAATTAATCTTGA+AGG | 0.512636 | 2:+25536198 | MsG0280008106.01.T01:CDS |
| ACCGTTGGCTGCATCTGCTA+TGG | 0.521251 | 2:-25536133 | None:intergenic |
| CATTGTTACAATAAGGCCAC+TGG | 0.522380 | 2:+25537165 | MsG0280008106.01.T01:CDS |
| ATGGAAGGCATCAGTAACCT+TGG | 0.524813 | 2:+25536174 | MsG0280008106.01.T01:CDS |
| ACTTTGGACTAAAATTCCAT+TGG | 0.525845 | 2:-25536950 | None:intergenic |
| GTCGCGAAAAGGTCGTTGCA+AGG | 0.526188 | 2:+25537513 | MsG0280008106.01.T01:CDS |
| TCAAAATTGTAGGATGATGA+AGG | 0.529691 | 2:-25536814 | None:intergenic |
| TCCTTCTTCTCAGCCAGCTG+AGG | 0.533497 | 2:+25535862 | MsG0280008106.01.T01:CDS |
| AGGTAGTTTCAAATAAATTC+CGG | 0.535034 | 2:-25537199 | None:intergenic |
| AGTTACCGGTAACCAACGTT+GGG | 0.538954 | 2:+25536250 | MsG0280008106.01.T01:CDS |
| TGGATTCAAACTTTAGAGGA+GGG | 0.543439 | 2:+25536863 | MsG0280008106.01.T01:CDS |
| GAAAGGAATTTCTCAGGCAC+AGG | 0.546982 | 2:+25537039 | MsG0280008106.01.T01:CDS |
| GATTAATTTGTGCACCTCCA+AGG | 0.547641 | 2:-25536191 | None:intergenic |
| GATTCAAACTTTAGAGGAGG+GGG | 0.548301 | 2:+25536865 | MsG0280008106.01.T01:CDS |
| ATGTTCTCTGGATCAAATCA+AGG | 0.548900 | 2:+25537387 | MsG0280008106.01.T01:CDS |
| GTATACCATGTGACATCCTA+TGG | 0.554929 | 2:+25536063 | MsG0280008106.01.T01:CDS |
| GCCATAGCAGATGCAGCCAA+CGG | 0.558955 | 2:+25536132 | MsG0280008106.01.T01:CDS |
| GCTGGCTGAGAAGAAGGAGA+AGG | 0.560665 | 2:-25535857 | None:intergenic |
| GGAATTTATTTGAAACTACC+TGG | 0.560862 | 2:+25537201 | MsG0280008106.01.T01:CDS |
| TCCTATGGTGCAGACCCTAC+AGG | 0.561285 | 2:+25536078 | MsG0280008106.01.T01:CDS |
| GAAGGTGCAAAAGAAGATGA+TGG | 0.564254 | 2:-25535839 | None:intergenic |
| AAGGATTGTGAATTCCTACA+TGG | 0.564668 | 2:+25537236 | MsG0280008106.01.T01:CDS |
| GGATTCAAACTTTAGAGGAG+GGG | 0.565517 | 2:+25536864 | MsG0280008106.01.T01:CDS |
| TGACAGCGTTATCGTTACCT+TGG | 0.565717 | 2:-25537071 | None:intergenic |
| TGTTGATAGGAACGTTGCAA+CGG | 0.568090 | 2:+25537470 | MsG0280008106.01.T01:CDS |
| TTGGATTCAAACTTTAGAGG+AGG | 0.571436 | 2:+25536862 | MsG0280008106.01.T01:CDS |
| GCACAAATTAATCTTGAAGG+TGG | 0.580445 | 2:+25536201 | MsG0280008106.01.T01:CDS |
| TCGCGAAAAGGTCGTTGCAA+GGG | 0.583554 | 2:+25537514 | MsG0280008106.01.T01:CDS |
| AATACTTGTATAATCCATGT+AGG | 0.587442 | 2:-25537250 | None:intergenic |
| AGCGAAGGATATTTGATGGA+AGG | 0.588639 | 2:+25536159 | MsG0280008106.01.T01:CDS |
| ACCTCTTCAAATGAAAATGA+CGG | 0.588895 | 2:+25536781 | MsG0280008106.01.T01:CDS |
| CTTGGCCAACACATAACCGC+CGG | 0.589091 | 2:+25537003 | MsG0280008106.01.T01:CDS |
| GAAGGCATCAGTAACCTTGG+AGG | 0.592934 | 2:+25536177 | MsG0280008106.01.T01:CDS |
| ATCCTTGTTTGTGTTAAACC+AGG | 0.593807 | 2:-25537219 | None:intergenic |
| ATTGTCCGACACATTTCTGA+TGG | 0.594327 | 2:-25537646 | None:intergenic |
| CGGCGGTTATGTGTTGGCCA+AGG | 0.595647 | 2:-25537002 | None:intergenic |
| AGAGAACATGTTATCTACAA+TGG | 0.597546 | 2:-25537373 | None:intergenic |
| TCCGGTACCGCCGAATCCAG+TGG | 0.602767 | 2:-25537181 | None:intergenic |
| GCAGCCAACGGTCCAAGCGA+AGG | 0.606415 | 2:+25536144 | MsG0280008106.01.T01:CDS |
| TACCATGATGTTCCCAACGT+TGG | 0.611044 | 2:-25536262 | None:intergenic |
| AAGTTACCGGTAACCAACGT+TGG | 0.613438 | 2:+25536249 | MsG0280008106.01.T01:CDS |
| AACCAACGTTGGGAACATCA+TGG | 0.617260 | 2:+25536260 | MsG0280008106.01.T01:CDS |
| GGCACAGGAATAAACATCCA+AGG | 0.625123 | 2:+25537054 | MsG0280008106.01.T01:CDS |
| TCATGCCATCAGAAATGTGT+CGG | 0.625289 | 2:+25537641 | MsG0280008106.01.T01:CDS |
| AATAAGGCCACTGGATTCGG+CGG | 0.629975 | 2:+25537174 | MsG0280008106.01.T01:CDS |
| TACCTGGTTTAACACAAACA+AGG | 0.631189 | 2:+25537217 | MsG0280008106.01.T01:CDS |
| AGCAGAGAAAATTACAACAT+CGG | 0.644559 | 2:-25537094 | None:intergenic |
| ATCATTAGGAAAATCATCTG+AGG | 0.645215 | 2:-25536737 | None:intergenic |
| CTGCACCATAGGATGTCACA+TGG | 0.645840 | 2:-25536068 | None:intergenic |
| GGCCAACACATAACCGCCGG+AGG | 0.651132 | 2:+25537006 | MsG0280008106.01.T01:CDS |
| ATTGTGTTGAAATCTATGAA+AGG | 0.670877 | 2:+25537333 | MsG0280008106.01.T01:CDS |
| ACACAATATTGGCATCACCA+AGG | 0.694010 | 2:-25537317 | None:intergenic |
| TTGATAGGAACGTTGCAACG+GGG | 0.722305 | 2:+25537472 | MsG0280008106.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAATTATTTGACAAT+TGG | + | Chr2:25536445-25536464 | MsG0280008106.01.T01:intron | 15.0% |
| !!! | TTTTTGTTGTTTTAATTTGA+TGG | + | Chr2:25536684-25536703 | MsG0280008106.01.T01:intron | 15.0% |
| !! | AAGTTTGTCATATTTATTGT+CGG | + | Chr2:25535983-25536002 | MsG0280008106.01.T01:intron | 20.0% |
| !! | ACAATAAATATGACAAACTT+AGG | - | Chr2:25535983-25536002 | None:intergenic | 20.0% |
| !! | ATTGTCTCAAAAATTGAATT+TGG | - | Chr2:25536497-25536516 | None:intergenic | 20.0% |
| !!! | ATAATTAGTTTTTCTACAGT+TGG | - | Chr2:25536437-25536456 | None:intergenic | 20.0% |
| !!! | ATGATTTTTTTTTGTTGTGT+AGG | + | Chr2:25536023-25536042 | MsG0280008106.01.T01:intron | 20.0% |
| !!! | TGATTTTTTTTTGTTGTGTA+GGG | + | Chr2:25536024-25536043 | MsG0280008106.01.T01:intron | 20.0% |
| !!! | TTTAGTATTTTTAGTCATGA+TGG | + | Chr2:25536526-25536545 | MsG0280008106.01.T01:intron | 20.0% |
| ! | AAACTTAGGTACAATGTTAT+AGG | - | Chr2:25535969-25535988 | None:intergenic | 25.0% |
| ! | AATACTTGTATAATCCATGT+AGG | - | Chr2:25537253-25537272 | None:intergenic | 25.0% |
| ! | AGGTAGTTTCAAATAAATTC+CGG | - | Chr2:25537202-25537221 | None:intergenic | 25.0% |
| ! | AGTTATGTACTCAAAATTGT+AGG | - | Chr2:25536827-25536846 | None:intergenic | 25.0% |
| ! | AGTTTCTTATGTATGTTTCA+TGG | - | Chr2:25536978-25536997 | None:intergenic | 25.0% |
| ! | ATGCACTAAACAAAAATCAA+AGG | - | Chr2:25535917-25535936 | None:intergenic | 25.0% |
| ! | ATTGTGTTGAAATCTATGAA+AGG | + | Chr2:25537333-25537352 | MsG0280008106.01.T01:CDS | 25.0% |
| ! | CATAGATTTCAACACAATAT+TGG | - | Chr2:25537331-25537350 | None:intergenic | 25.0% |
| ! | GTTGTTTGTTTCATTGTAAT+TGG | + | Chr2:25535695-25535714 | MsG0280008106.01.T01:CDS | 25.0% |
| ! | TAAAGTTTGAATCCAATAAG+AGG | - | Chr2:25536858-25536877 | None:intergenic | 25.0% |
| ! | TTATTGGATTCAAACTTTAG+AGG | + | Chr2:25536859-25536878 | MsG0280008106.01.T01:CDS | 25.0% |
| ! | TTGATCAAGTTATTGTTGAT+AGG | + | Chr2:25537457-25537476 | MsG0280008106.01.T01:CDS | 25.0% |
| !! | ATAGTCAATTCTCATTTTCT+TGG | - | Chr2:25536574-25536593 | None:intergenic | 25.0% |
| !! | ATGACAAGAAAATGTTTTGT+TGG | + | Chr2:25535656-25535675 | MsG0280008106.01.T01:CDS | 25.0% |
| !! | CTTTTCGTACTGTAAAAAAA+AGG | - | Chr2:25536408-25536427 | None:intergenic | 25.0% |
| !! | TGAACATTTTTGATAAGGTT+AGG | - | Chr2:25537585-25537604 | None:intergenic | 25.0% |
| !! | TTCATTGTAATTGGTGTTTA+TGG | + | Chr2:25535704-25535723 | MsG0280008106.01.T01:CDS | 25.0% |
| !!! | AGTACTGAACATTTTTGATA+AGG | - | Chr2:25537590-25537609 | None:intergenic | 25.0% |
| !!! | TCTATGAAAGGTGTTTTAAA+TGG | + | Chr2:25537345-25537364 | MsG0280008106.01.T01:CDS | 25.0% |
| !!! | TTTTTTTAGTTGAGAACACT+AGG | + | Chr2:25535936-25535955 | MsG0280008106.01.T01:intron | 25.0% |
| AAAAACGAAAGGAATTTCTC+AGG | + | Chr2:25537033-25537052 | MsG0280008106.01.T01:CDS | 30.0% | |
| ACCTCTTCAAATGAAAATGA+CGG | + | Chr2:25536781-25536800 | MsG0280008106.01.T01:CDS | 30.0% | |
| ACTTGATCAACTTGATGAAA+AGG | - | Chr2:25537447-25537466 | None:intergenic | 30.0% | |
| ACTTTGGACTAAAATTCCAT+TGG | - | Chr2:25536953-25536972 | None:intergenic | 30.0% | |
| AGAGAACATGTTATCTACAA+TGG | - | Chr2:25537376-25537395 | None:intergenic | 30.0% | |
| AGCAGAGAAAATTACAACAT+CGG | - | Chr2:25537097-25537116 | None:intergenic | 30.0% | |
| ATCATTAGGAAAATCATCTG+AGG | - | Chr2:25536740-25536759 | None:intergenic | 30.0% | |
| ATTACACATTTCACAACCAA+TGG | + | Chr2:25536934-25536953 | MsG0280008106.01.T01:CDS | 30.0% | |
| ATTGTAGATAACATGTTCTC+TGG | + | Chr2:25537375-25537394 | MsG0280008106.01.T01:CDS | 30.0% | |
| CTAGAAATATGAAGTTGAAC+AGG | - | Chr2:25537288-25537307 | None:intergenic | 30.0% | |
| GTGACAAAAATTTACCTACT+AGG | + | Chr2:25535726-25535745 | MsG0280008106.01.T01:CDS | 30.0% | |
| TACATAAGAAACTCTTTCCT+TGG | + | Chr2:25536985-25537004 | MsG0280008106.01.T01:CDS | 30.0% | |
| TCAAAATTGTAGGATGATGA+AGG | - | Chr2:25536817-25536836 | None:intergenic | 30.0% | |
| TGGTGTACATTGTTACAATA+AGG | + | Chr2:25537158-25537177 | MsG0280008106.01.T01:CDS | 30.0% | |
| TTGATGGAAAAACAGATACA+TGG | + | Chr2:25536700-25536719 | MsG0280008106.01.T01:intron | 30.0% | |
| ! | AGAATCATGTCTTGTTAAAG+AGG | - | Chr2:25535807-25535826 | None:intergenic | 30.0% |
| ! | GGAATTTATTTGAAACTACC+TGG | + | Chr2:25537201-25537220 | MsG0280008106.01.T01:CDS | 30.0% |
| ! | TCAGATGATTTTCCTAATGA+TGG | + | Chr2:25536739-25536758 | MsG0280008106.01.T01:CDS | 30.0% |
| !! | AAAATCATCTGAGGCTTTTA+TGG | - | Chr2:25536731-25536750 | None:intergenic | 30.0% |
| !! | AATGGAATTTTAGTCCAAAG+TGG | + | Chr2:25536952-25536971 | MsG0280008106.01.T01:CDS | 30.0% |
| !! | AGGTGTTGAAATTGTTCATT+TGG | + | Chr2:25537407-25537426 | MsG0280008106.01.T01:CDS | 30.0% |
| !! | ATTTCTAGTAGTTTCTTCCT+TGG | + | Chr2:25537300-25537319 | MsG0280008106.01.T01:CDS | 30.0% |
| !! | TTTTGAGTACATAACTCTCA+AGG | + | Chr2:25536831-25536850 | MsG0280008106.01.T01:CDS | 30.0% |
| !!! | GGAAGTGTTTTAAGACTTTA+TGG | + | Chr2:25536466-25536485 | MsG0280008106.01.T01:intron | 30.0% |
| !!! | TGTTTTAAGACTTTATGGCT+AGG | + | Chr2:25536471-25536490 | MsG0280008106.01.T01:intron | 30.0% |
| AAGGATTGTGAATTCCTACA+TGG | + | Chr2:25537236-25537255 | MsG0280008106.01.T01:CDS | 35.0% | |
| ACATTTCTGATGGCATGATT+AGG | - | Chr2:25537639-25537658 | None:intergenic | 35.0% | |
| AGCAAATGAAACAATTTCGC+AGG | - | Chr2:25536290-25536309 | None:intergenic | 35.0% | |
| ATGGAAAAACAGATACATGG+AGG | + | Chr2:25536703-25536722 | MsG0280008106.01.T01:intron | 35.0% | |
| ATGTTCTCTGGATCAAATCA+AGG | + | Chr2:25537387-25537406 | MsG0280008106.01.T01:CDS | 35.0% | |
| CAGTACTCATTAAGTTCAAC+AGG | + | Chr2:25537603-25537622 | MsG0280008106.01.T01:CDS | 35.0% | |
| CCTACTAGGAAAATTTCTGA+TGG | + | Chr2:25535740-25535759 | MsG0280008106.01.T01:CDS | 35.0% | |
| GCACAAATTAATCTTGAAGG+TGG | + | Chr2:25536201-25536220 | MsG0280008106.01.T01:CDS | 35.0% | |
| GGTGCACAAATTAATCTTGA+AGG | + | Chr2:25536198-25536217 | MsG0280008106.01.T01:CDS | 35.0% | |
| TACCTGGTTTAACACAAACA+AGG | + | Chr2:25537217-25537236 | MsG0280008106.01.T01:CDS | 35.0% | |
| TCAATGATGTAGCCATCATT+AGG | - | Chr2:25536754-25536773 | None:intergenic | 35.0% | |
| TGATTGAATTATACCTCAGC+TGG | - | Chr2:25535878-25535897 | None:intergenic | 35.0% | |
| TGCTATCTGAATTTCCTGTA+GGG | - | Chr2:25536095-25536114 | None:intergenic | 35.0% | |
| ! | ATCCTTGTTTGTGTTAAACC+AGG | - | Chr2:25537222-25537241 | None:intergenic | 35.0% |
| ! | CCATCAGAAATTTTCCTAGT+AGG | - | Chr2:25535743-25535762 | None:intergenic | 35.0% |
| ! | GTAATTTTCTCTGCTGCTAT+AGG | + | Chr2:25537102-25537121 | MsG0280008106.01.T01:CDS | 35.0% |
| ! | TGGATTCAAACTTTAGAGGA+GGG | + | Chr2:25536863-25536882 | MsG0280008106.01.T01:CDS | 35.0% |
| ! | TTGGATTCAAACTTTAGAGG+AGG | + | Chr2:25536862-25536881 | MsG0280008106.01.T01:CDS | 35.0% |
| !! | TCCGTCATTTTCATTTGAAG+AGG | - | Chr2:25536785-25536804 | None:intergenic | 35.0% |
| AACTCTCAAGGACCTCTTAT+TGG | + | Chr2:25536843-25536862 | MsG0280008106.01.T01:CDS | 40.0% | |
| ACACAATATTGGCATCACCA+AGG | - | Chr2:25537320-25537339 | None:intergenic | 40.0% | |
| AGCGAAGGATATTTGATGGA+AGG | + | Chr2:25536159-25536178 | MsG0280008106.01.T01:CDS | 40.0% | |
| ATTGTCCGACACATTTCTGA+TGG | - | Chr2:25537649-25537668 | None:intergenic | 40.0% | |
| CAGAAAGTCACTCAAGTTAC+CGG | + | Chr2:25536236-25536255 | MsG0280008106.01.T01:CDS | 40.0% | |
| CATTGTTACAATAAGGCCAC+TGG | + | Chr2:25537165-25537184 | MsG0280008106.01.T01:CDS | 40.0% | |
| GATGTCACATGGTATACTCT+TGG | - | Chr2:25536060-25536079 | None:intergenic | 40.0% | |
| GCTATAGGAATCATGGTAAC+TGG | + | Chr2:25537117-25537136 | MsG0280008106.01.T01:CDS | 40.0% | |
| GTATACCATGTGACATCCTA+TGG | + | Chr2:25536063-25536082 | MsG0280008106.01.T01:CDS | 40.0% | |
| GTGCTATCTGAATTTCCTGT+AGG | - | Chr2:25536096-25536115 | None:intergenic | 40.0% | |
| TACAATAAGGCCACTGGATT+CGG | + | Chr2:25537171-25537190 | MsG0280008106.01.T01:CDS | 40.0% | |
| TCATGCCATCAGAAATGTGT+CGG | + | Chr2:25537641-25537660 | MsG0280008106.01.T01:CDS | 40.0% | |
| TCCAAGCGAAGGATATTTGA+TGG | + | Chr2:25536155-25536174 | MsG0280008106.01.T01:CDS | 40.0% | |
| TCCATCAAATATCCTTCGCT+TGG | - | Chr2:25536159-25536178 | None:intergenic | 40.0% | |
| TGCAACGGGGATGAATTTAA+AGG | + | Chr2:25537485-25537504 | MsG0280008106.01.T01:CDS | 40.0% | |
| TGTATGTTTCATGGCCACTT+TGG | - | Chr2:25536969-25536988 | None:intergenic | 40.0% | |
| ! | ACTGTAGAAACTGATTCTCG+AGG | + | Chr2:25536352-25536371 | MsG0280008106.01.T01:intron | 40.0% |
| ! | AGTCATGATGGTGAAGTAGT+TGG | + | Chr2:25536538-25536557 | MsG0280008106.01.T01:intron | 40.0% |
| ! | GAAGGTGCAAAAGAAGATGA+TGG | - | Chr2:25535842-25535861 | None:intergenic | 40.0% |
| ! | GATTCAAACTTTAGAGGAGG+GGG | + | Chr2:25536865-25536884 | MsG0280008106.01.T01:CDS | 40.0% |
| ! | GGATTCAAACTTTAGAGGAG+GGG | + | Chr2:25536864-25536883 | MsG0280008106.01.T01:CDS | 40.0% |
| ! | GGTCAAGCAAACACATTTTC+TGG | + | Chr2:25537138-25537157 | MsG0280008106.01.T01:CDS | 40.0% |
| ! | TGTTGATAGGAACGTTGCAA+CGG | + | Chr2:25537470-25537489 | MsG0280008106.01.T01:CDS | 40.0% |
| !! | GATTAATTTGTGCACCTCCA+AGG | - | Chr2:25536194-25536213 | None:intergenic | 40.0% |
| !! | TGTTGGTTTCATGCTTCTTG+AGG | + | Chr2:25535673-25535692 | MsG0280008106.01.T01:CDS | 40.0% |
| AAAAGGTCGTTGCAAGGGAA+TGG | + | Chr2:25537519-25537538 | MsG0280008106.01.T01:CDS | 45.0% | |
| AACCAACGTTGGGAACATCA+TGG | + | Chr2:25536260-25536279 | MsG0280008106.01.T01:CDS | 45.0% | |
| AAGTTACCGGTAACCAACGT+TGG | + | Chr2:25536249-25536268 | MsG0280008106.01.T01:CDS | 45.0% | |
| AGTTACCGGTAACCAACGTT+GGG | + | Chr2:25536250-25536269 | MsG0280008106.01.T01:CDS | 45.0% | |
| CTCTGCTGCTATAGGAATCA+TGG | + | Chr2:25537110-25537129 | MsG0280008106.01.T01:CDS | 45.0% | |
| GAAAGGAATTTCTCAGGCAC+AGG | + | Chr2:25537039-25537058 | MsG0280008106.01.T01:CDS | 45.0% | |
| GGCACAGGAATAAACATCCA+AGG | + | Chr2:25537054-25537073 | MsG0280008106.01.T01:CDS | 45.0% | |
| TAAAGGCTACTGTCGCGAAA+AGG | + | Chr2:25537502-25537521 | MsG0280008106.01.T01:CDS | 45.0% | |
| TACCATGATGTTCCCAACGT+TGG | - | Chr2:25536265-25536284 | None:intergenic | 45.0% | |
| TGACAGCGTTATCGTTACCT+TGG | - | Chr2:25537074-25537093 | None:intergenic | 45.0% | |
| TGCAAGGGAATGGAACTTCA+TGG | + | Chr2:25537529-25537548 | MsG0280008106.01.T01:CDS | 45.0% | |
| TTGATAGGAACGTTGCAACG+GGG | + | Chr2:25537472-25537491 | MsG0280008106.01.T01:CDS | 45.0% | |
| ! | ATGTTCCCAACGTTGGTTAC+CGG | - | Chr2:25536258-25536277 | None:intergenic | 45.0% |
| ! | GTTGATAGGAACGTTGCAAC+GGG | + | Chr2:25537471-25537490 | MsG0280008106.01.T01:CDS | 45.0% |
| !! | ATGGAAGGCATCAGTAACCT+TGG | + | Chr2:25536174-25536193 | MsG0280008106.01.T01:CDS | 45.0% |
| !! | CCTTTCGTTTTTATCGCCTC+CGG | - | Chr2:25537025-25537044 | None:intergenic | 45.0% |
| !! | TGCTGCGAATGTTTTTGTCG+CGG | + | Chr2:25537698-25537717 | MsG0280008106.01.T01:CDS | 45.0% |
| AATAAGGCCACTGGATTCGG+CGG | + | Chr2:25537174-25537193 | MsG0280008106.01.T01:CDS | 50.0% | |
| ATATCCTTCGCTTGGACCGT+TGG | - | Chr2:25536151-25536170 | None:intergenic | 50.0% | |
| CCGGAGGCGATAAAAACGAA+AGG | + | Chr2:25537022-25537041 | MsG0280008106.01.T01:CDS | 50.0% | |
| CTGCACCATAGGATGTCACA+TGG | - | Chr2:25536071-25536090 | None:intergenic | 50.0% | |
| TCGCGAAAAGGTCGTTGCAA+GGG | + | Chr2:25537514-25537533 | MsG0280008106.01.T01:CDS | 50.0% | |
| !! | GAAGGCATCAGTAACCTTGG+AGG | + | Chr2:25536177-25536196 | MsG0280008106.01.T01:CDS | 50.0% |
| !! | TGCGAATGTTTTTGTCGCGG+TGG | + | Chr2:25537701-25537720 | MsG0280008106.01.T01:CDS | 50.0% |
| !! | TTCGTTTTTATCGCCTCCGG+CGG | - | Chr2:25537022-25537041 | None:intergenic | 50.0% |
| ACCTCAGCTGGCTGAGAAGA+AGG | - | Chr2:25535866-25535885 | None:intergenic | 55.0% | |
| CTTGGCCAACACATAACCGC+CGG | + | Chr2:25537003-25537022 | MsG0280008106.01.T01:CDS | 55.0% | |
| GCCATAGCAGATGCAGCCAA+CGG | + | Chr2:25536132-25536151 | MsG0280008106.01.T01:CDS | 55.0% | |
| GCTGGCTGAGAAGAAGGAGA+AGG | - | Chr2:25535860-25535879 | None:intergenic | 55.0% | |
| GTCGCGAAAAGGTCGTTGCA+AGG | + | Chr2:25537513-25537532 | MsG0280008106.01.T01:CDS | 55.0% | |
| TCCTATGGTGCAGACCCTAC+AGG | + | Chr2:25536078-25536097 | MsG0280008106.01.T01:CDS | 55.0% | |
| TCCTGTAGGGTCTGCACCAT+AGG | - | Chr2:25536082-25536101 | None:intergenic | 55.0% | |
| TCCTTCTTCTCAGCCAGCTG+AGG | + | Chr2:25535862-25535881 | MsG0280008106.01.T01:CDS | 55.0% | |
| ! | ACCGTTGGCTGCATCTGCTA+TGG | - | Chr2:25536136-25536155 | None:intergenic | 55.0% |
| ! | CGGCGGTTATGTGTTGGCCA+AGG | - | Chr2:25537005-25537024 | None:intergenic | 60.0% |
| CGCCTCCGGCGGTTATGTGT+TGG | - | Chr2:25537011-25537030 | None:intergenic | 65.0% | |
| GCAGCCAACGGTCCAAGCGA+AGG | + | Chr2:25536144-25536163 | MsG0280008106.01.T01:CDS | 65.0% | |
| GCCACTGGATTCGGCGGTAC+CGG | + | Chr2:25537180-25537199 | MsG0280008106.01.T01:CDS | 65.0% | |
| GGCCAACACATAACCGCCGG+AGG | + | Chr2:25537006-25537025 | MsG0280008106.01.T01:CDS | 65.0% | |
| TCCGGTACCGCCGAATCCAG+TGG | - | Chr2:25537184-25537203 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 25535656 | 25537743 | 25535656 | ID=MsG0280008106.01;Name=MsG0280008106.01 |
| Chr2 | mRNA | 25535656 | 25537743 | 25535656 | ID=MsG0280008106.01.T01;Parent=MsG0280008106.01;Name=MsG0280008106.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|497 |
| Chr2 | exon | 25535656 | 25535883 | 25535656 | ID=MsG0280008106.01.T01:exon:34907;Parent=MsG0280008106.01.T01 |
| Chr2 | exon | 25536045 | 25536281 | 25536045 | ID=MsG0280008106.01.T01:exon:34908;Parent=MsG0280008106.01.T01 |
| Chr2 | exon | 25536715 | 25537743 | 25536715 | ID=MsG0280008106.01.T01:exon:34909;Parent=MsG0280008106.01.T01 |
| Chr2 | CDS | 25535656 | 25535883 | 25535656 | ID=MsG0280008106.01.T01:cds;Parent=MsG0280008106.01.T01 |
| Chr2 | CDS | 25536045 | 25536281 | 25536045 | ID=MsG0280008106.01.T01:cds;Parent=MsG0280008106.01.T01 |
| Chr2 | CDS | 25536715 | 25537743 | 25536715 | ID=MsG0280008106.01.T01:cds;Parent=MsG0280008106.01.T01 |
| Gene Sequence |
| Protein sequence |
