AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034852.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034852.01.T01 MTR_6g081060 97.361 379 9 1 1 378 1 379 0.0 774
MsG0680034852.01.T01 MTR_0223s0010 51.506 332 152 3 36 360 47 376 5.63e-126 368
MsG0680034852.01.T01 MTR_1g112300 56.597 288 121 2 73 360 64 347 1.12e-123 361
MsG0680034852.01.T01 MTR_1g112300 58.582 268 110 1 93 360 1 267 1.11e-120 350
MsG0680034852.01.T01 MTR_1g044340 40.728 302 167 5 78 370 6 304 4.13e-71 225
MsG0680034852.01.T01 MTR_8g007405 39.057 297 169 5 80 367 56 349 4.39e-68 219
MsG0680034852.01.T01 MTR_8g007400 38.369 331 186 6 51 364 23 352 2.11e-67 217
MsG0680034852.01.T01 MTR_8g007395 38.279 337 178 8 48 357 19 352 5.19e-67 216
MsG0680034852.01.T01 MTR_7g029335 33.212 274 177 5 93 362 1 272 1.58e-48 165
MsG0680034852.01.T01 MTR_7g029330 31.955 266 170 7 103 362 2 262 1.28e-40 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034852.01.T01 AT1G14590 47.170 371 182 6 7 375 18 376 2.24e-123 361
MsG0680034852.01.T01 AT2G02061 56.989 279 118 2 87 364 111 388 6.30e-119 350
MsG0680034852.01.T01 AT2G02061 57.091 275 116 2 87 360 111 384 2.67e-118 349
MsG0680034852.01.T01 AT4G19975 49.852 337 151 4 33 360 26 353 1.46e-117 345
MsG0680034852.01.T01 AT5G44820 54.704 287 124 3 76 360 82 364 6.33e-114 337
MsG0680034852.01.T01 AT4G19970 43.363 339 176 6 34 360 41 375 3.22e-99 299
MsG0680034852.01.T01 AT4G15970 50.896 279 126 4 83 360 32 300 1.55e-93 284
MsG0680034852.01.T01 AT1G28700 37.582 306 173 6 67 365 36 330 2.59e-61 201
MsG0680034852.01.T01 AT1G28695 39.068 279 159 5 69 341 30 303 1.63e-59 196
MsG0680034852.01.T01 AT1G28710 36.808 307 181 6 44 341 12 314 2.34e-58 193
MsG0680034852.01.T01 AT1G28710 36.808 307 181 6 44 341 12 314 2.34e-58 193
MsG0680034852.01.T01 AT1G28710 36.808 307 181 6 44 341 12 314 2.34e-58 193
MsG0680034852.01.T01 AT5G40900 34.615 286 159 7 84 361 57 322 3.22e-46 161

Find 55 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGGTTCTACAAATTT+TGG 0.142477 6:+95580410 MsG0680034852.01.T01:CDS
AAGCTTCTTATTTGTAATTA+AGG 0.172101 6:-95580500 None:intergenic
TTCTTAAGCACAAGCTATTT+TGG 0.185065 6:+95580532 MsG0680034852.01.T01:CDS
AACAATTCTGCTTCTCCTTT+TGG 0.199551 6:+95573779 MsG0680034852.01.T01:CDS
TCTTGGTGCTGTTCTTCATT+TGG 0.209687 6:+95579202 MsG0680034852.01.T01:CDS
TGTCAATCTAGCAAGGATTT+TGG 0.246249 6:+95580562 MsG0680034852.01.T01:CDS
CTTGGTGCTGTTCTTCATTT+GGG 0.259335 6:+95579203 MsG0680034852.01.T01:CDS
TTGTAGAACCAAATTGTTCT+TGG 0.269685 6:-95580403 None:intergenic
AATCAAATCCAAGAACAATT+TGG 0.309827 6:+95580395 MsG0680034852.01.T01:CDS
AGCTTCTTATTTGTAATTAA+GGG 0.327364 6:-95580499 None:intergenic
ATTGCTTGTGATTATTTCAA+TGG 0.335617 6:+95580322 MsG0680034852.01.T01:CDS
TGGAGAAGAATTGAATTTCT+TGG 0.355189 6:+95579185 MsG0680034852.01.T01:CDS
CAAATAAGAAGCTTAAGATT+AGG 0.357408 6:+95580509 MsG0680034852.01.T01:CDS
TTAAGAACACTCTTTAGCTT+TGG 0.370284 6:-95578888 None:intergenic
TGCTAATTGTTGTGTTGGCT+TGG 0.407831 6:+95580603 MsG0680034852.01.T01:CDS
ACATATGTGAATCCTCCATT+TGG 0.413713 6:-95580370 None:intergenic
GGGATATAGCTTTGTGTTCA+CGG 0.424554 6:+95579223 MsG0680034852.01.T01:CDS
AACAAGTCATGGAAGTCAAT+TGG 0.426656 6:+95573671 MsG0680034852.01.T01:CDS
TGAGGATTGGAAGAAGTATA+TGG 0.432395 6:+95580657 MsG0680034852.01.T01:CDS
GAACCAAACACAAAAGCTAT+TGG 0.435864 6:+95579019 MsG0680034852.01.T01:CDS
TCTTTGTAAAATTGTTTGAA+TGG 0.440475 6:-95580286 None:intergenic
CCATGACTTGTTCCCTTCTC+CGG 0.447086 6:-95573660 None:intergenic
CCTTTCTTTGTTACGTTCAA+AGG 0.448630 6:-95581276 None:intergenic
TCATGGAAGTCAATTGGAAC+AGG 0.450424 6:+95573677 MsG0680034852.01.T01:CDS
AAGTAATGTGAGATAGTAGC+AGG 0.464851 6:-95573806 None:intergenic
TGTTACCAACTTCAAACTAA+AGG 0.466478 6:+95579107 MsG0680034852.01.T01:CDS
ACATCTTGATCATGCATAGT+TGG 0.467730 6:-95580454 None:intergenic
TGTCACCTTTAGTTTGAAGT+TGG 0.471511 6:-95579112 None:intergenic
ATAGTAGCAGGAAGACCAAA+AGG 0.473505 6:-95573794 None:intergenic
ACTATCTCACATTACTTCAA+TGG 0.475598 6:+95573812 MsG0680034852.01.T01:CDS
TCTCCACATCATGTGTAAGT+AGG 0.481289 6:-95579168 None:intergenic
CCTTTGAACGTAACAAAGAA+AGG 0.490285 6:+95581276 MsG0680034852.01.T01:CDS
GTCGACAACGTCGCCGGAGA+AGG 0.501945 6:+95573647 MsG0680034852.01.T01:CDS
TGGATAGTTGTGCATGTCAA+AGG 0.516348 6:-95580350 None:intergenic
CCGGAGAAGGGAACAAGTCA+TGG 0.519589 6:+95573660 MsG0680034852.01.T01:CDS
CACATCATGTGTAAGTAGGT+TGG 0.522912 6:-95579164 None:intergenic
ATGCATGCTAATTGTTGTGT+TGG 0.526017 6:+95580598 MsG0680034852.01.T01:CDS
GACATGCACAACTATCCAAA+TGG 0.526709 6:+95580355 MsG0680034852.01.T01:CDS
TCTTAAACAAGCATCAATGA+AGG 0.526752 6:+95578905 MsG0680034852.01.T01:CDS
AATTGATCAAATATTGAACC+TGG 0.540784 6:-95578972 None:intergenic
TTCTCCGGCGACGTTGTCGA+CGG 0.543832 6:-95573645 None:intergenic
AAGAATCATTATGCTGCTGC+TGG 0.552708 6:+95573620 MsG0680034852.01.T01:CDS
TCACAACATTGAATGATGCA+TGG 0.566676 6:+95578943 MsG0680034852.01.T01:CDS
GGTGCCGTCGACAACGTCGC+CGG 0.568256 6:+95573641 MsG0680034852.01.T01:CDS
TCGACAACGTCGCCGGAGAA+GGG 0.575557 6:+95573648 MsG0680034852.01.T01:CDS
ATCATCTTGTGGTAATAACA+TGG 0.577012 6:+95579042 MsG0680034852.01.T01:CDS
CACAACATTGAATGATGCAT+GGG 0.590967 6:+95578944 MsG0680034852.01.T01:CDS
CAACCTACTTACACATGATG+TGG 0.592721 6:+95579165 MsG0680034852.01.T01:CDS
CTTAAACAAGCATCAATGAA+GGG 0.599814 6:+95578906 MsG0680034852.01.T01:CDS
AAAGCTATTGGATCATCTTG+TGG 0.607279 6:+95579031 MsG0680034852.01.T01:CDS
AATGATGCATGGGCTGAACC+AGG 0.607742 6:+95578954 MsG0680034852.01.T01:CDS
TTGTGTTGGCTTGGAGAACA+AGG 0.616497 6:+95580612 MsG0680034852.01.T01:CDS
TGCAGGACACTGATATAATG+TGG 0.636069 6:+95580254 MsG0680034852.01.T01:intron
TCATCTTGTGGTAATAACAT+GGG 0.641239 6:+95579043 MsG0680034852.01.T01:CDS
ATGCACAACTATCCAAATGG+AGG 0.677945 6:+95580358 MsG0680034852.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAATAAATTTTATAT+TGG - Chr6:95576196-95576215 None:intergenic 0.0%
!! CATCAAAATAAAATAAAAAT+TGG + Chr6:95576622-95576641 MsG0680034852.01.T01:intron 10.0%
!! CTGTTATTATATTATTATAT+TGG - Chr6:95576747-95576766 None:intergenic 10.0%
!! TATATAGCAAAAATAAAAAA+GGG - Chr6:95577784-95577803 None:intergenic 10.0%
!! TTATATAGCAAAAATAAAAA+AGG - Chr6:95577785-95577804 None:intergenic 10.0%
!!! AATTTAATTAGTCTATAAAA+AGG + Chr6:95574993-95575012 MsG0680034852.01.T01:intron 10.0%
!!! AGTTTTTAATAATATTTTAG+AGG - Chr6:95577042-95577061 None:intergenic 10.0%
!!! ATTAAATTTGTGTTTTATTA+AGG - Chr6:95575336-95575355 None:intergenic 10.0%
!!! ATTTTATGTAAAAAAATTTG+AGG + Chr6:95576517-95576536 MsG0680034852.01.T01:intron 10.0%
!!! ATTTTTTTTGAATCTATTAA+AGG + Chr6:95575048-95575067 MsG0680034852.01.T01:intron 10.0%
!!! TAGTTTTAATTTGTTTTTAT+AGG + Chr6:95577100-95577119 MsG0680034852.01.T01:intron 10.0%
!!! TATTTTCTCAATTTTAATTT+TGG + Chr6:95574710-95574729 MsG0680034852.01.T01:intron 10.0%
!!! TTTTATGTAAAAAAATTTGA+GGG + Chr6:95576518-95576537 MsG0680034852.01.T01:intron 10.0%
!!! TTTTTCATGATATTATTTAT+TGG + Chr6:95577337-95577356 MsG0680034852.01.T01:intron 10.0%
!! AAACAAGAATTCATATTATT+AGG - Chr6:95575909-95575928 None:intergenic 15.0%
!! AATTAATGTTGTGATAATTT+AGG - Chr6:95575133-95575152 None:intergenic 15.0%
!! AGTTGAATTGAATAATATAA+TGG - Chr6:95581048-95581067 None:intergenic 15.0%
!! ATAAACTTAAATACTTTGAT+AGG + Chr6:95576877-95576896 MsG0680034852.01.T01:intron 15.0%
!! ATATAGAGAAAATTAAGATT+GGG + Chr6:95579299-95579318 MsG0680034852.01.T01:intron 15.0%
!! ATATCAATTTATATTGTGAA+GGG + Chr6:95580120-95580139 MsG0680034852.01.T01:intron 15.0%
!! ATATTATTCAATTCAACTTT+GGG + Chr6:95581050-95581069 MsG0680034852.01.T01:intron 15.0%
!! TATATCAATTTATATTGTGA+AGG + Chr6:95580119-95580138 MsG0680034852.01.T01:intron 15.0%
!! TATATTATTCAATTCAACTT+TGG + Chr6:95581049-95581068 MsG0680034852.01.T01:intron 15.0%
!! TATCAAATGTTTCATTATAT+GGG + Chr6:95579376-95579395 MsG0680034852.01.T01:intron 15.0%
!! TCAAGGAATATTATAAAAAT+GGG - Chr6:95574790-95574809 None:intergenic 15.0%
!! TTCAAGGAATATTATAAAAA+TGG - Chr6:95574791-95574810 None:intergenic 15.0%
!!! AAAAAATTCAACTTTTTGAA+TGG - Chr6:95573991-95574010 None:intergenic 15.0%
!!! AAGAAATTCAACTTTTTAAT+TGG - Chr6:95574037-95574056 None:intergenic 15.0%
!!! AATAATATGAATTCTTGTTT+AGG + Chr6:95575909-95575928 MsG0680034852.01.T01:intron 15.0%
!!! AATCAAAAACTTGATTTTTT+TGG + Chr6:95573940-95573959 MsG0680034852.01.T01:intron 15.0%
!!! ATAAGTTTTGATATATCTAT+AGG + Chr6:95579625-95579644 MsG0680034852.01.T01:intron 15.0%
!!! ATAATATGAATTCTTGTTTA+GGG + Chr6:95575910-95575929 MsG0680034852.01.T01:intron 15.0%
!!! ATCAAAAACTTGATTTTTTT+GGG + Chr6:95573941-95573960 MsG0680034852.01.T01:intron 15.0%
!!! ATCAATTACAAACAAAATTT+TGG + Chr6:95576421-95576440 MsG0680034852.01.T01:intron 15.0%
!!! ATTTTTGCTATATAATATAG+TGG + Chr6:95577790-95577809 MsG0680034852.01.T01:intron 15.0%
!!! GCAAATTAATTTTGTTAATT+GGG + Chr6:95580746-95580765 MsG0680034852.01.T01:intron 15.0%
!!! GCATATTTACATTTTTTTTA+AGG + Chr6:95577154-95577173 MsG0680034852.01.T01:intron 15.0%
!!! TAAAATAGTTTTAGTGAAAA+AGG + Chr6:95574930-95574949 MsG0680034852.01.T01:intron 15.0%
!!! TCAATTTTAATTTTGGATTT+TGG + Chr6:95574717-95574736 MsG0680034852.01.T01:intron 15.0%
!!! TGCAAATTAATTTTGTTAAT+TGG + Chr6:95580745-95580764 MsG0680034852.01.T01:intron 15.0%
!!! TGTTTTATTTTTAAGAATCA+GGG - Chr6:95576277-95576296 None:intergenic 15.0%
!!! TTAATTTTGTGTTATTTTTG+TGG + Chr6:95574009-95574028 MsG0680034852.01.T01:intron 15.0%
!!! TTATTTTATAAGCTCTTTTA+AGG - Chr6:95579974-95579993 None:intergenic 15.0%
!!! TTGTTTTATTTTTAAGAATC+AGG - Chr6:95576278-95576297 None:intergenic 15.0%
!!! TTTTTGCTATATAATATAGT+GGG + Chr6:95577791-95577810 MsG0680034852.01.T01:intron 15.0%
!! AAAAAATATCAATTGATGCA+GGG - Chr6:95575452-95575471 None:intergenic 20.0%
!! AAATTCATGACATCAAAAAA+TGG - Chr6:95578199-95578218 None:intergenic 20.0%
!! AATATCATGAAAAAACAATG+TGG - Chr6:95577331-95577350 None:intergenic 20.0%
!! ACCATAAAATTAACTATAGA+AGG + Chr6:95577692-95577711 MsG0680034852.01.T01:intron 20.0%
!! AGAAAACTAAAGTTACAATT+TGG - Chr6:95578398-95578417 None:intergenic 20.0%
!! ATAGATGAAAATAATTGTGT+TGG + Chr6:95577399-95577418 MsG0680034852.01.T01:intron 20.0%
!! ATCAAATGTTTCATTATATG+GGG + Chr6:95579377-95579396 MsG0680034852.01.T01:intron 20.0%
!! ATTTCTATATATAGGATCAT+AGG + Chr6:95577924-95577943 MsG0680034852.01.T01:intron 20.0%
!! CACATACATTATATATGAAA+AGG - Chr6:95576586-95576605 None:intergenic 20.0%
!! CATATAGAGAAAATTAAGAT+TGG + Chr6:95579298-95579317 MsG0680034852.01.T01:intron 20.0%
!! CTATATATAGAAATATAGAG+TGG - Chr6:95577918-95577937 None:intergenic 20.0%
!! CTATCAAATGTTTCATTATA+TGG + Chr6:95579375-95579394 MsG0680034852.01.T01:intron 20.0%
!! TATCAATTTATATTGTGAAG+GGG + Chr6:95580121-95580140 MsG0680034852.01.T01:intron 20.0%
!! TCAATTCATTATTCATATGT+GGG + Chr6:95576235-95576254 MsG0680034852.01.T01:intron 20.0%
!! TCTTTGTAAAATTGTTTGAA+TGG - Chr6:95580289-95580308 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+TGG + Chr6:95579494-95579513 MsG0680034852.01.T01:intron 20.0%
!! TTCAATTCATTATTCATATG+TGG + Chr6:95576234-95576253 MsG0680034852.01.T01:intron 20.0%
!! TTCATCTATGTCAATAAAAT+TGG - Chr6:95577388-95577407 None:intergenic 20.0%
!!! AAATTATTTAAAATGACCTG+TGG + Chr6:95576831-95576850 MsG0680034852.01.T01:intron 20.0%
!!! AAATTTTAATGTGTCAATTG+TGG - Chr6:95580200-95580219 None:intergenic 20.0%
!!! AAGCTTCTTATTTGTAATTA+AGG - Chr6:95580503-95580522 None:intergenic 20.0%
!!! AATATCTTAATTGCACTTTT+TGG + Chr6:95577716-95577735 MsG0680034852.01.T01:intron 20.0%
!!! AATTGTACATGAATTTTTAG+TGG - Chr6:95577980-95577999 None:intergenic 20.0%
!!! AATTTGCAGTTAGAATTTTA+GGG - Chr6:95578584-95578603 None:intergenic 20.0%
!!! ACATTTTTTTCTAGAACTTA+TGG - Chr6:95581148-95581167 None:intergenic 20.0%
!!! AGCTTCTTATTTGTAATTAA+GGG - Chr6:95580502-95580521 None:intergenic 20.0%
!!! ATTACAAACAAAATTTTGGA+AGG + Chr6:95576425-95576444 MsG0680034852.01.T01:intron 20.0%
!!! CAATTGACACATTAAAATTT+TGG + Chr6:95580200-95580219 MsG0680034852.01.T01:intron 20.0%
!!! CACTCTATATTTCTATATAT+AGG + Chr6:95577916-95577935 MsG0680034852.01.T01:intron 20.0%
!!! CTGCAAATTAGAATAAATTT+TGG + Chr6:95578595-95578614 MsG0680034852.01.T01:intron 20.0%
!!! GAAAATAATTTTGTAGCATA+TGG - Chr6:95575613-95575632 None:intergenic 20.0%
!!! GATTTTACACTAAAAACTAA+AGG - Chr6:95580964-95580983 None:intergenic 20.0%
!!! GTTTTATTTTTAAGAATCAG+GGG - Chr6:95576276-95576295 None:intergenic 20.0%
!!! TAAATGAATTCTTAAGTTGT+TGG + Chr6:95577641-95577660 MsG0680034852.01.T01:intron 20.0%
!!! TAATTTGCAGTTAGAATTTT+AGG - Chr6:95578585-95578604 None:intergenic 20.0%
!!! TCATTTATTACCCTTTTAAT+CGG - Chr6:95577628-95577647 None:intergenic 20.0%
!!! TCATTTTCTCAAATTGTTAT+CGG - Chr6:95579469-95579488 None:intergenic 20.0%
!!! TGATTTGCAATTATAATTCT+GGG + Chr6:95573894-95573913 MsG0680034852.01.T01:intron 20.0%
!!! TGTTTGATTATTGGTAATTT+AGG + Chr6:95578330-95578349 MsG0680034852.01.T01:intron 20.0%
!!! TTTGATTATCTTTTGAAACA+CGG + Chr6:95579415-95579434 MsG0680034852.01.T01:intron 20.0%
!!! TTTTTGCTTTGTTTGATTAT+TGG + Chr6:95578321-95578340 MsG0680034852.01.T01:intron 20.0%
! AAAATTCTGAGTTTGAATCT+GGG + Chr6:95576553-95576572 MsG0680034852.01.T01:intron 25.0%
! AAATGTAAATATGCAAGTTG+AGG - Chr6:95577148-95577167 None:intergenic 25.0%
! AAATTATATATGTTAGCACG+TGG - Chr6:95577215-95577234 None:intergenic 25.0%
! AATCAAATCCAAGAACAATT+TGG + Chr6:95580395-95580414 MsG0680034852.01.T01:CDS 25.0%
! AATGATTGTTGGATTGAAAT+CGG + Chr6:95577512-95577531 MsG0680034852.01.T01:intron 25.0%
! AATTGATCAAATATTGAACC+TGG - Chr6:95578975-95578994 None:intergenic 25.0%
! ATGATGATAGCAACATAAAA+TGG - Chr6:95581198-95581217 None:intergenic 25.0%
! ATTCATAGTTACTTGTGTAA+GGG + Chr6:95579322-95579341 MsG0680034852.01.T01:intron 25.0%
! ATTGCTTGTGATTATTTCAA+TGG + Chr6:95580322-95580341 MsG0680034852.01.T01:CDS 25.0%
! CAAAAGAATAAGATGTTTGA+TGG + Chr6:95575666-95575685 MsG0680034852.01.T01:intron 25.0%
! CAAATAAGAAGCTTAAGATT+AGG + Chr6:95580509-95580528 MsG0680034852.01.T01:CDS 25.0%
! CACTTGTGTATATAAGTAAA+TGG + Chr6:95578024-95578043 MsG0680034852.01.T01:intron 25.0%
! CATTTACTTATATACACAAG+TGG - Chr6:95578026-95578045 None:intergenic 25.0%
! GAAAAAATATCAATTGATGC+AGG - Chr6:95575453-95575472 None:intergenic 25.0%
! GATGATTATCTACACATAAA+AGG - Chr6:95579672-95579691 None:intergenic 25.0%
! TAAAAACTAAAGGCAAGATT+TGG - Chr6:95580954-95580973 None:intergenic 25.0%
! TAAAATTCTGAGTTTGAATC+TGG + Chr6:95576552-95576571 MsG0680034852.01.T01:intron 25.0%
! TATACCAATTCTATACTTCA+AGG - Chr6:95574807-95574826 None:intergenic 25.0%
! TATTCCTTGAAGTATAGAAT+TGG + Chr6:95574800-95574819 MsG0680034852.01.T01:intron 25.0%
! TCAAAAAATGGTTAGGATTT+AGG - Chr6:95578187-95578206 None:intergenic 25.0%
! TCAGACAAAAATCATTTGAT+CGG + Chr6:95575285-95575304 MsG0680034852.01.T01:intron 25.0%
! TGTCTTTATGTTTATGTAAC+AGG + Chr6:95578854-95578873 MsG0680034852.01.T01:intron 25.0%
! TGTGTATATAAGTAAATGGA+GGG + Chr6:95578028-95578047 MsG0680034852.01.T01:intron 25.0%
! TTGTGTATATAAGTAAATGG+AGG + Chr6:95578027-95578046 MsG0680034852.01.T01:intron 25.0%
! TTTCCTAGCATTGTTTAATT+GGG + Chr6:95581170-95581189 MsG0680034852.01.T01:intron 25.0%
! TTTGGAAGGAAAAAAAAACT+TGG + Chr6:95576439-95576458 MsG0680034852.01.T01:intron 25.0%
!! AGTGTTCTTCTTTCTAATTT+TGG + Chr6:95576347-95576366 MsG0680034852.01.T01:intron 25.0%
!! ATAAAGGGATATATTTTCCT+TGG + Chr6:95577820-95577839 MsG0680034852.01.T01:intron 25.0%
!! ATGATGATGTGTATAATAGT+AGG + Chr6:95574346-95574365 MsG0680034852.01.T01:intron 25.0%
!! GATTAGAAGATTCATTGATT+TGG + Chr6:95574544-95574563 MsG0680034852.01.T01:intron 25.0%
!! GATTTGGAATGAGAAAATAA+GGG + Chr6:95574560-95574579 MsG0680034852.01.T01:intron 25.0%
!! GCCTTCTATAGTTAATTTTA+TGG - Chr6:95577696-95577715 None:intergenic 25.0%
!! GTGATTTGCAATTATAATTC+TGG + Chr6:95573893-95573912 MsG0680034852.01.T01:intron 25.0%
!! GTGTTCTTCTTTCTAATTTT+GGG + Chr6:95576348-95576367 MsG0680034852.01.T01:intron 25.0%
!! TAATTTTGTAGCATATGGTT+AGG - Chr6:95575608-95575627 None:intergenic 25.0%
!! TCTAAATAGCTTTTTGTCAT+AGG + Chr6:95580037-95580056 MsG0680034852.01.T01:intron 25.0%
!! TGATTATTGGTAATTTAGGT+TGG + Chr6:95578334-95578353 MsG0680034852.01.T01:intron 25.0%
!! TGATTTGGAATGAGAAAATA+AGG + Chr6:95574559-95574578 MsG0680034852.01.T01:intron 25.0%
!! TGTACAATTTTTACCTCAAA+TGG + Chr6:95577991-95578010 MsG0680034852.01.T01:intron 25.0%
!! TTTCTTGAGAGTTTTCAAAT+TGG + Chr6:95578993-95579012 MsG0680034852.01.T01:CDS 25.0%
!! TTTTAGTGTAAAATCTCACA+AGG + Chr6:95580969-95580988 MsG0680034852.01.T01:intron 25.0%
!! TTTTGCACATCTATTCTTTT+TGG + Chr6:95578152-95578171 MsG0680034852.01.T01:intron 25.0%
!!! CAATTTGGTTCTACAAATTT+TGG + Chr6:95580410-95580429 MsG0680034852.01.T01:CDS 25.0%
!!! CATAAGTTTTTGTTTTTGAG+AGG + Chr6:95574843-95574862 MsG0680034852.01.T01:intron 25.0%
!!! GATGTCATGAATTTTAACAA+AGG + Chr6:95578205-95578224 MsG0680034852.01.T01:intron 25.0%
!!! GTGTAGCTTTTGAAAAATTA+CGG + Chr6:95580866-95580885 MsG0680034852.01.T01:intron 25.0%
!!! GTTATTGACTTCAAATTTGA+TGG + Chr6:95578117-95578136 MsG0680034852.01.T01:intron 25.0%
!!! GTTGAATTTCTTGTTTTTGA+TGG + Chr6:95574045-95574064 MsG0680034852.01.T01:intron 25.0%
!!! TATCATAAATCGATTTTGTC+AGG + Chr6:95574238-95574257 MsG0680034852.01.T01:intron 25.0%
!!! TATTAAGGTTAAAAGTGTCA+CGG - Chr6:95575321-95575340 None:intergenic 25.0%
!!! TGTATGTTTGGTTCTATTTT+TGG - Chr6:95578765-95578784 None:intergenic 25.0%
!!! TTATTTTGATGTTAGTCTAG+TGG - Chr6:95576613-95576632 None:intergenic 25.0%
!!! TTGACTTGGATAATCTAAAT+TGG - Chr6:95574104-95574123 None:intergenic 25.0%
!!! TTTTTCTAGAACTTATGGAA+AGG - Chr6:95581143-95581162 None:intergenic 25.0%
AAAAAGGGTTGTAGACATTA+TGG - Chr6:95577769-95577788 None:intergenic 30.0%
AAAAGAAGCAAAATCTGCAT+AGG - Chr6:95579851-95579870 None:intergenic 30.0%
AAAATGTGAACATATCCACA+AGG + Chr6:95575513-95575532 MsG0680034852.01.T01:intron 30.0%
AAAGGCTGAACAAAAACAAA+GGG + Chr6:95581294-95581313 MsG0680034852.01.T01:CDS 30.0%
AACTTAAATCACAAAACCAC+AGG - Chr6:95576850-95576869 None:intergenic 30.0%
AATCAACTCATCCAAGAAAA+TGG - Chr6:95578425-95578444 None:intergenic 30.0%
ACACATCATCATCACTATTT+AGG - Chr6:95574338-95574357 None:intergenic 30.0%
ACTATCTCACATTACTTCAA+TGG + Chr6:95573812-95573831 MsG0680034852.01.T01:CDS 30.0%
AGGAAAATCATATGCAAGTT+GGG + Chr6:95574863-95574882 MsG0680034852.01.T01:intron 30.0%
AGTCATGAAAAAAGCTTCAT+TGG - Chr6:95579144-95579163 None:intergenic 30.0%
ATCATCTTGTGGTAATAACA+TGG + Chr6:95579042-95579061 MsG0680034852.01.T01:CDS 30.0%
ATGTTCGTTGAATCGAAATT+AGG - Chr6:95577594-95577613 None:intergenic 30.0%
CAAAGAATAATATCCTACCA+AGG - Chr6:95577840-95577859 None:intergenic 30.0%
CAATGTATTTAGCCTATGTT+TGG - Chr6:95580927-95580946 None:intergenic 30.0%
CAGTATAAAAGTCATTCATG+TGG + Chr6:95576764-95576783 MsG0680034852.01.T01:intron 30.0%
CATATATAGTTGAGCTTATC+TGG - Chr6:95579746-95579765 None:intergenic 30.0%
CATGAAAAAACAATGTGGAT+TGG - Chr6:95577326-95577345 None:intergenic 30.0%
CATGACATCAAAAAATGGTT+AGG - Chr6:95578194-95578213 None:intergenic 30.0%
CCTACTTAAATGAGTAAAGT+GGG - Chr6:95577439-95577458 None:intergenic 30.0%
CTCCACTCAAAAAACAAAAT+AGG - Chr6:95574271-95574290 None:intergenic 30.0%
CTTAAACAAGCATCAATGAA+GGG + Chr6:95578906-95578925 MsG0680034852.01.T01:CDS 30.0%
GATTCATAGTTACTTGTGTA+AGG + Chr6:95579321-95579340 MsG0680034852.01.T01:intron 30.0%
GTCAACACATAAATGATTGT+TGG + Chr6:95577501-95577520 MsG0680034852.01.T01:intron 30.0%
GTCACCAAAAAAATAACATG+TGG - Chr6:95576791-95576810 None:intergenic 30.0%
GTGTATATAAGTAAATGGAG+GGG + Chr6:95578029-95578048 MsG0680034852.01.T01:intron 30.0%
GTTTCCTAGCATTGTTTAAT+TGG + Chr6:95581169-95581188 MsG0680034852.01.T01:intron 30.0%
TACATTGTTGACATCATGTA+GGG + Chr6:95581250-95581269 MsG0680034852.01.T01:intron 30.0%
TAGTAGAAAATAGGTACTAG+TGG + Chr6:95574584-95574603 MsG0680034852.01.T01:intron 30.0%
TCATAGCTTATGTAGTTGTT+TGG + Chr6:95579588-95579607 MsG0680034852.01.T01:intron 30.0%
TCATCTTGTGGTAATAACAT+GGG + Chr6:95579043-95579062 MsG0680034852.01.T01:CDS 30.0%
TCCTACTTAAATGAGTAAAG+TGG - Chr6:95577440-95577459 None:intergenic 30.0%
TCTTAAACAAGCATCAATGA+AGG + Chr6:95578905-95578924 MsG0680034852.01.T01:CDS 30.0%
TGGAGAAGAATTGAATTTCT+TGG + Chr6:95579185-95579204 MsG0680034852.01.T01:CDS 30.0%
TGGTAGGATATTATTCTTTG+AGG + Chr6:95577840-95577859 MsG0680034852.01.T01:intron 30.0%
TGTATATAAGTAAATGGAGG+GGG + Chr6:95578030-95578049 MsG0680034852.01.T01:intron 30.0%
TGTTACCAACTTCAAACTAA+AGG + Chr6:95579107-95579126 MsG0680034852.01.T01:CDS 30.0%
TTCATAGTTACTTGTGTAAG+GGG + Chr6:95579323-95579342 MsG0680034852.01.T01:intron 30.0%
TTCCTAGCATTGTTTAATTG+GGG + Chr6:95581171-95581190 MsG0680034852.01.T01:intron 30.0%
TTGCATGTTTGTGACAATAT+TGG + Chr6:95577185-95577204 MsG0680034852.01.T01:intron 30.0%
TTGTAGAACCAAATTGTTCT+TGG - Chr6:95580406-95580425 None:intergenic 30.0%
TTTGTTAAAGCTCCAAATCA+CGG + Chr6:95578684-95578703 MsG0680034852.01.T01:intron 30.0%
! AAAAGATTACGTTTGCTGAT+TGG + Chr6:95574642-95574661 MsG0680034852.01.T01:intron 30.0%
! AAAGATTACGTTTGCTGATT+GGG + Chr6:95574643-95574662 MsG0680034852.01.T01:intron 30.0%
! AATAAGGGCTAGTAGAAAAT+AGG + Chr6:95574575-95574594 MsG0680034852.01.T01:intron 30.0%
! ATATAGTGGGAAAGGAATAA+AGG + Chr6:95577804-95577823 MsG0680034852.01.T01:intron 30.0%
! CTATCTTGACTCTATTTTCT+TGG - Chr6:95581023-95581042 None:intergenic 30.0%
! GAAGTTTTTCTCTTATCTTC+AGG - Chr6:95580688-95580707 None:intergenic 30.0%
! GCTATATAATATAGTGGGAA+AGG + Chr6:95577796-95577815 MsG0680034852.01.T01:intron 30.0%
! GTTTTCTTCTACCATTTTCT+TGG + Chr6:95578411-95578430 MsG0680034852.01.T01:intron 30.0%
! TATAGTGGGAAAGGAATAAA+GGG + Chr6:95577805-95577824 MsG0680034852.01.T01:intron 30.0%
! TGATCTTAAGATTTTGCTTG+AGG + Chr6:95580639-95580658 MsG0680034852.01.T01:CDS 30.0%
! TGTGGATATGTTCACATTTT+AGG - Chr6:95575513-95575532 None:intergenic 30.0%
! TTAAGAACACTCTTTAGCTT+TGG - Chr6:95578891-95578910 None:intergenic 30.0%
! TTAAGATTTTGCTTGAGGAT+TGG + Chr6:95580644-95580663 MsG0680034852.01.T01:CDS 30.0%
! TTCTTAAGCACAAGCTATTT+TGG + Chr6:95580532-95580551 MsG0680034852.01.T01:CDS 30.0%
! TTGAGAGTTTTCAAATTGGT+GGG + Chr6:95578997-95579016 MsG0680034852.01.T01:CDS 30.0%
! TTTTCTGTTCATGTTTGACT+TGG - Chr6:95574118-95574137 None:intergenic 30.0%
!! AGGATATTATTCTTTGAGGT+TGG + Chr6:95577844-95577863 MsG0680034852.01.T01:intron 30.0%
!! TTTTAAGAATCAGGGGATTT+AGG - Chr6:95576269-95576288 None:intergenic 30.0%
!!! AGAAGCTAGTTGCTATTTTT+TGG + Chr6:95578258-95578277 MsG0680034852.01.T01:intron 30.0%
!!! AGTTGTTTTTACAGTTGAAG+AGG - Chr6:95580097-95580116 None:intergenic 30.0%
!!! ATGTTTGGTTCTATTTTTGG+TGG - Chr6:95578762-95578781 None:intergenic 30.0%
!!! CTATTTTTGGTGGTGTTAAA+GGG - Chr6:95578752-95578771 None:intergenic 30.0%
!!! TAGTTGCTATTTTTTGGTGT+AGG + Chr6:95578264-95578283 MsG0680034852.01.T01:intron 30.0%
!!! TCTATTTTTGGTGGTGTTAA+AGG - Chr6:95578753-95578772 None:intergenic 30.0%
!!! TGCCTATTTTGTTTTTTGAG+TGG + Chr6:95574266-95574285 MsG0680034852.01.T01:intron 30.0%
!!! TGGACCACATGTTATTTTTT+TGG + Chr6:95576784-95576803 MsG0680034852.01.T01:intron 30.0%
AAAGCTATTGGATCATCTTG+TGG + Chr6:95579031-95579050 MsG0680034852.01.T01:CDS 35.0%
AACAAGTCATGGAAGTCAAT+TGG + Chr6:95573671-95573690 MsG0680034852.01.T01:CDS 35.0%
AACATACAATGAACGCAAGA+TGG - Chr6:95578062-95578081 None:intergenic 35.0%
AACATATCCACAAGGAGAAT+AGG + Chr6:95575521-95575540 MsG0680034852.01.T01:intron 35.0%
AAGACAGATAAATTGCTCAC+AGG - Chr6:95576062-95576081 None:intergenic 35.0%
AAGTAATGTGAGATAGTAGC+AGG - Chr6:95573809-95573828 None:intergenic 35.0%
AATGTAGACTAAGAGTTGAC+TGG + Chr6:95577275-95577294 MsG0680034852.01.T01:intron 35.0%
ACATATGTGAATCCTCCATT+TGG - Chr6:95580373-95580392 None:intergenic 35.0%
ACATCTTGATCATGCATAGT+TGG - Chr6:95580457-95580476 None:intergenic 35.0%
ACATTGTTGACATCATGTAG+GGG + Chr6:95581251-95581270 MsG0680034852.01.T01:intron 35.0%
AGAATAGGAGATACATGAAG+AGG + Chr6:95575536-95575555 MsG0680034852.01.T01:intron 35.0%
AGCATATGGTTAGGTTAAGT+AGG - Chr6:95575599-95575618 None:intergenic 35.0%
AGTCAACTCTTAGTCTACAT+TGG - Chr6:95577276-95577295 None:intergenic 35.0%
AGTCTACATCACCATTATTG+AGG - Chr6:95577873-95577892 None:intergenic 35.0%
AGTGACATCATGTGTATGTT+TGG - Chr6:95578777-95578796 None:intergenic 35.0%
ATGCATGCTAATTGTTGTGT+TGG + Chr6:95580598-95580617 MsG0680034852.01.T01:CDS 35.0%
ATTATATCAGTGTCCTGCAA+AGG - Chr6:95580253-95580272 None:intergenic 35.0%
CACAACATTGAATGATGCAT+GGG + Chr6:95578944-95578963 MsG0680034852.01.T01:CDS 35.0%
CAGAGCTTAACAAGTGAAAA+TGG - Chr6:95576696-95576715 None:intergenic 35.0%
CATCATCATCACTATTTAGG+TGG - Chr6:95574335-95574354 None:intergenic 35.0%
CCCACTTTACTCATTTAAGT+AGG + Chr6:95577436-95577455 MsG0680034852.01.T01:intron 35.0%
CCTTTCTTTGTTACGTTCAA+AGG - Chr6:95581279-95581298 None:intergenic 35.0%
CCTTTGAACGTAACAAAGAA+AGG + Chr6:95581276-95581295 MsG0680034852.01.T01:CDS 35.0%
CTACATTGTTGACATCATGT+AGG + Chr6:95581249-95581268 MsG0680034852.01.T01:intron 35.0%
GAAAGGCTGAACAAAAACAA+AGG + Chr6:95581293-95581312 MsG0680034852.01.T01:CDS 35.0%
GAACCAAACACAAAAGCTAT+TGG + Chr6:95579019-95579038 MsG0680034852.01.T01:CDS 35.0%
GAATAGGAGATACATGAAGA+GGG + Chr6:95575537-95575556 MsG0680034852.01.T01:intron 35.0%
GAATTCATATTATTAGGCCC+CGG - Chr6:95575903-95575922 None:intergenic 35.0%
GAGGAAAATCATATGCAAGT+TGG + Chr6:95574862-95574881 MsG0680034852.01.T01:intron 35.0%
GTATATAAGTAAATGGAGGG+GGG + Chr6:95578031-95578050 MsG0680034852.01.T01:intron 35.0%
GTCAACTCTTAGTCTACATT+GGG - Chr6:95577275-95577294 None:intergenic 35.0%
GTCAAGATCCTCTAAACAAT+TGG - Chr6:95580152-95580171 None:intergenic 35.0%
GTTCTTGCTTATGCATTAAG+AGG - Chr6:95575807-95575826 None:intergenic 35.0%
GTTGTAGACATTATGGATCA+TGG - Chr6:95577762-95577781 None:intergenic 35.0%
TAACCCTCTTCACAAAAACA+TGG - Chr6:95573706-95573725 None:intergenic 35.0%
TAAGTGTGTGTTTCGTATCA+TGG + Chr6:95580793-95580812 MsG0680034852.01.T01:intron 35.0%
TCACAACATTGAATGATGCA+TGG + Chr6:95578943-95578962 MsG0680034852.01.T01:CDS 35.0%
TCTCAAATTGTTATCGGTGT+CGG - Chr6:95579463-95579482 None:intergenic 35.0%
TGATTCCAAACATGCATTGT+CGG - Chr6:95578629-95578648 None:intergenic 35.0%
TTAGCCTATGTTTGGTATTG+CGG - Chr6:95580919-95580938 None:intergenic 35.0%
TTATATCAGTGTCCTGCAAA+GGG - Chr6:95580252-95580271 None:intergenic 35.0%
! AACAATTCTGCTTCTCCTTT+TGG + Chr6:95573779-95573798 MsG0680034852.01.T01:CDS 35.0%
! AATCATATGCAAGTTGGGAT+TGG + Chr6:95574868-95574887 MsG0680034852.01.T01:intron 35.0%
! ACCAACACATGTCTAAAATC+AGG + Chr6:95579536-95579555 MsG0680034852.01.T01:intron 35.0%
! AGGGATATATTTTCCTTGGT+AGG + Chr6:95577824-95577843 MsG0680034852.01.T01:intron 35.0%
! ATCATATGCAAGTTGGGATT+GGG + Chr6:95574869-95574888 MsG0680034852.01.T01:intron 35.0%
! CTTGAGAGTTTTCAAATTGG+TGG + Chr6:95578996-95579015 MsG0680034852.01.T01:CDS 35.0%
! GATCATAGGTGAGATTTTGA+AGG + Chr6:95577938-95577957 MsG0680034852.01.T01:intron 35.0%
! GATCCAATAGCTTTTGTGTT+TGG - Chr6:95579025-95579044 None:intergenic 35.0%
! GGATATGTTCACATTTTAGG+AGG - Chr6:95575510-95575529 None:intergenic 35.0%
! TCCTGATTTTAGACATGTGT+TGG - Chr6:95579540-95579559 None:intergenic 35.0%
! TGAGGATTGGAAGAAGTATA+TGG + Chr6:95580657-95580676 MsG0680034852.01.T01:CDS 35.0%
! TGTCAATCTAGCAAGGATTT+TGG + Chr6:95580562-95580581 MsG0680034852.01.T01:CDS 35.0%
! TTGCATTACCTGCAACTTTT+TGG - Chr6:95580730-95580749 None:intergenic 35.0%
! TTTTTACCTCAAATGGCCTT+AGG + Chr6:95577998-95578017 MsG0680034852.01.T01:intron 35.0%
!! AAGCCATGTTTTTGTGAAGA+GGG + Chr6:95573700-95573719 MsG0680034852.01.T01:CDS 35.0%
!! AGCTCTTTTAAGGATGCATT+TGG - Chr6:95579964-95579983 None:intergenic 35.0%
!! TAAGCACAAGCTATTTTGGA+GGG + Chr6:95580536-95580555 MsG0680034852.01.T01:CDS 35.0%
!! TGTCACCTTTAGTTTGAAGT+TGG - Chr6:95579115-95579134 None:intergenic 35.0%
!! TTAAGCACAAGCTATTTTGG+AGG + Chr6:95580535-95580554 MsG0680034852.01.T01:CDS 35.0%
!! TTAGGAGGTTTCTAGAATGT+GGG - Chr6:95575495-95575514 None:intergenic 35.0%
!! TTCAGTCTTGAGTTGAGTTT+GGG - Chr6:95575829-95575848 None:intergenic 35.0%
!! TTTAGGAGGTTTCTAGAATG+TGG - Chr6:95575496-95575515 None:intergenic 35.0%
!! TTTCAGTCTTGAGTTGAGTT+TGG - Chr6:95575830-95575849 None:intergenic 35.0%
!! TTTCTAGAATGTGGGGAAAT+GGG - Chr6:95575487-95575506 None:intergenic 35.0%
!! TTTTGGATTTTGGCACCATT+CGG + Chr6:95574727-95574746 MsG0680034852.01.T01:intron 35.0%
!! TTTTTCAGCAGACTCTTAAG+GGG + Chr6:95574675-95574694 MsG0680034852.01.T01:intron 35.0%
!!! CTTTTTCAGCAGACTCTTAA+GGG + Chr6:95574674-95574693 MsG0680034852.01.T01:intron 35.0%
!!! TATCTTTTGAAACACGGACA+GGG + Chr6:95579421-95579440 MsG0680034852.01.T01:intron 35.0%
!!! TATGTTGTTTTACCCTTTGC+AGG + Chr6:95580237-95580256 MsG0680034852.01.T01:intron 35.0%
!!! TCTTTTTCAGCAGACTCTTA+AGG + Chr6:95574673-95574692 MsG0680034852.01.T01:intron 35.0%
!!! TTATCTTTTGAAACACGGAC+AGG + Chr6:95579420-95579439 MsG0680034852.01.T01:intron 35.0%
AAGAATCATTATGCTGCTGC+TGG + Chr6:95573620-95573639 MsG0680034852.01.T01:CDS 40.0%
ACTCAACACGTTGGAAACAA+CGG - Chr6:95575415-95575434 None:intergenic 40.0%
AGCACGTAACAGTAACAATG+AGG - Chr6:95576477-95576496 None:intergenic 40.0%
AGCTGGTTATGTCTGATCAA+TGG - Chr6:95577238-95577257 None:intergenic 40.0%
ATAGTAGCAGGAAGACCAAA+AGG - Chr6:95573797-95573816 None:intergenic 40.0%
ATATACACAAGTGGCTCCTA+AGG - Chr6:95578017-95578036 None:intergenic 40.0%
ATGCACAACTATCCAAATGG+AGG + Chr6:95580358-95580377 MsG0680034852.01.T01:CDS 40.0%
CAAAACCGACAATGCATGTT+TGG + Chr6:95578621-95578640 MsG0680034852.01.T01:intron 40.0%
CAACCTACTTACACATGATG+TGG + Chr6:95579165-95579184 MsG0680034852.01.T01:CDS 40.0%
CACATCATGTGTAAGTAGGT+TGG - Chr6:95579167-95579186 None:intergenic 40.0%
CATCATCACTATTTAGGTGG+AGG - Chr6:95574332-95574351 None:intergenic 40.0%
CGGAGGATATGTCAAAATCA+TGG - Chr6:95580899-95580918 None:intergenic 40.0%
GAAAAACTTCACACCCTTCT+TGG + Chr6:95580698-95580717 MsG0680034852.01.T01:CDS 40.0%
GAACTGCGTATCAAAAAGCA+GGG + Chr6:95575727-95575746 MsG0680034852.01.T01:intron 40.0%
GACATGCACAACTATCCAAA+TGG + Chr6:95580355-95580374 MsG0680034852.01.T01:CDS 40.0%
GACCCCAATTAAACAATGCT+AGG - Chr6:95581176-95581195 None:intergenic 40.0%
GGGTTAGACCAATTGTTTAG+AGG + Chr6:95580141-95580160 MsG0680034852.01.T01:intron 40.0%
TACAATGAACGCAAGATGGT+TGG - Chr6:95578058-95578077 None:intergenic 40.0%
TATGAAGCACAGACACTCAT+CGG - Chr6:95579573-95579592 None:intergenic 40.0%
TCATGGAAGTCAATTGGAAC+AGG + Chr6:95573677-95573696 MsG0680034852.01.T01:CDS 40.0%
TCTCCACATCATGTGTAAGT+AGG - Chr6:95579171-95579190 None:intergenic 40.0%
TGAACTGCGTATCAAAAAGC+AGG + Chr6:95575726-95575745 MsG0680034852.01.T01:intron 40.0%
TGCAGGACACTGATATAATG+TGG + Chr6:95580254-95580273 MsG0680034852.01.T01:intron 40.0%
TGGATAGTTGTGCATGTCAA+AGG - Chr6:95580353-95580372 None:intergenic 40.0%
TGTATCTCCTATTCTCCTTG+TGG - Chr6:95575531-95575550 None:intergenic 40.0%
TGTGTGTTTCGTATCATGGT+GGG + Chr6:95580797-95580816 MsG0680034852.01.T01:intron 40.0%
! AAAGGGTATGTTCGGATTAG+CGG - Chr6:95578735-95578754 None:intergenic 40.0%
! AATCAACAGAAGCACGTGTT+CGG - Chr6:95576159-95576178 None:intergenic 40.0%
! GGGAGATGTTGATTAGATCA+AGG + Chr6:95581070-95581089 MsG0680034852.01.T01:intron 40.0%
! GTGGTGTTAAAGGGTATGTT+CGG - Chr6:95578743-95578762 None:intergenic 40.0%
! TCATATGCAAGTTGGGATTG+GGG + Chr6:95574870-95574889 MsG0680034852.01.T01:intron 40.0%
!! AGGGTTTTGTCAATCTAGCA+AGG + Chr6:95580555-95580574 MsG0680034852.01.T01:CDS 40.0%
!! CTTGGTGCTGTTCTTCATTT+GGG + Chr6:95579203-95579222 MsG0680034852.01.T01:CDS 40.0%
!! GAAGCCATGTTTTTGTGAAG+AGG + Chr6:95573699-95573718 MsG0680034852.01.T01:CDS 40.0%
!! GATGTCTGCTTTGTTGTTGT+GGG + Chr6:95574078-95574097 MsG0680034852.01.T01:intron 40.0%
!! GGGATATAGCTTTGTGTTCA+CGG + Chr6:95579223-95579242 MsG0680034852.01.T01:CDS 40.0%
!! GTTTCTAGAATGTGGGGAAA+TGG - Chr6:95575488-95575507 None:intergenic 40.0%
!! TAGGAGGTTTCTAGAATGTG+GGG - Chr6:95575494-95575513 None:intergenic 40.0%
!! TCTTGGTGCTGTTCTTCATT+TGG + Chr6:95579202-95579221 MsG0680034852.01.T01:CDS 40.0%
!! TGATGTCTGCTTTGTTGTTG+TGG + Chr6:95574077-95574096 MsG0680034852.01.T01:intron 40.0%
!! TGCAACGAGAGTATGCTTTT+TGG - Chr6:95579070-95579089 None:intergenic 40.0%
!! TGCTAATTGTTGTGTTGGCT+TGG + Chr6:95580603-95580622 MsG0680034852.01.T01:CDS 40.0%
!! TTCTAGAATGTGGGGAAATG+GGG - Chr6:95575486-95575505 None:intergenic 40.0%
!! TTTTTGGCACACTCCAAGAA+GGG - Chr6:95580714-95580733 None:intergenic 40.0%
!!! TTGTTGCTTTTGCTGTGTTG+TGG + Chr6:95573744-95573763 MsG0680034852.01.T01:CDS 40.0%
AAATAGGTACTAGTGGCGTG+TGG + Chr6:95574591-95574610 MsG0680034852.01.T01:intron 45.0%
AATAGGTACTAGTGGCGTGT+GGG + Chr6:95574592-95574611 MsG0680034852.01.T01:intron 45.0%
CGAAACAACGAGTCTCAAAG+AGG + Chr6:95575565-95575584 MsG0680034852.01.T01:intron 45.0%
GACACAGCTAAAGACAACAC+TGG + Chr6:95575877-95575896 MsG0680034852.01.T01:intron 45.0%
GACATAACCAGCTGTACACA+TGG + Chr6:95577245-95577264 MsG0680034852.01.T01:intron 45.0%
GAGGTTGGCATCCTCAATAA+TGG + Chr6:95577859-95577878 MsG0680034852.01.T01:intron 45.0%
GGCTGAACAAAAACAAAGGG+AGG + Chr6:95581297-95581316 MsG0680034852.01.T01:CDS 45.0%
GTGTGTGTTTCGTATCATGG+TGG + Chr6:95580796-95580815 MsG0680034852.01.T01:intron 45.0%
TCCTCCGCAATACCAAACAT+AGG + Chr6:95580912-95580931 MsG0680034852.01.T01:intron 45.0%
! AGTTGAAGCACTCAACACGT+TGG - Chr6:95575424-95575443 None:intergenic 45.0%
! ATCAACAGAAGCACGTGTTC+GGG - Chr6:95576158-95576177 None:intergenic 45.0%
!! ATCATGGTGTCACCGTGATT+TGG - Chr6:95578699-95578718 None:intergenic 45.0%
!! CTTTTTGGCACACTCCAAGA+AGG - Chr6:95580715-95580734 None:intergenic 45.0%
!! TTGTGTTGGCTTGGAGAACA+AGG + Chr6:95580612-95580631 MsG0680034852.01.T01:CDS 45.0%
!! ATTAGAATATTATTTATTTA+AGG + Chr6:95575025-95575044 MsG0680034852.01.T01:intron 5.0%
!!! AAAAAGTTTTAATTTTTTTT+TGG - Chr6:95575362-95575381 None:intergenic 5.0%
!!! TAATTATAATAATATTTTAG+AGG - Chr6:95577005-95577024 None:intergenic 5.0%
AGCTAAAGACAACACTGGCC+GGG + Chr6:95575882-95575901 MsG0680034852.01.T01:intron 50.0%
ATAGGTACTAGTGGCGTGTG+GGG + Chr6:95574593-95574612 MsG0680034852.01.T01:intron 50.0%
CAGCTAAAGACAACACTGGC+CGG + Chr6:95575881-95575900 MsG0680034852.01.T01:intron 50.0%
CCATTCGGAATTGTGTGAGG+AGG + Chr6:95574742-95574761 MsG0680034852.01.T01:intron 50.0%
CCTCCTCACACAATTCCGAA+TGG - Chr6:95574745-95574764 None:intergenic 50.0%
CGGTGAGTTTGGCAGAATCA+TGG - Chr6:95578715-95578734 None:intergenic 50.0%
GCACAGACACTCATCGGATT+AGG - Chr6:95579567-95579586 None:intergenic 50.0%
GCACCATTCGGAATTGTGTG+AGG + Chr6:95574739-95574758 MsG0680034852.01.T01:intron 50.0%
GCCTATGTTTGGTATTGCGG+AGG - Chr6:95580916-95580935 None:intergenic 50.0%
GGAATTGTGTGAGGAGGAAG+AGG + Chr6:95574748-95574767 MsG0680034852.01.T01:intron 50.0%
GGAGTGTGCCAAAAAGTTGC+AGG + Chr6:95580719-95580738 MsG0680034852.01.T01:CDS 50.0%
! AATGATGCATGGGCTGAACC+AGG + Chr6:95578954-95578973 MsG0680034852.01.T01:CDS 50.0%
!! CCATGACTTGTTCCCTTCTC+CGG - Chr6:95573663-95573682 None:intergenic 50.0%
!! GTTCGGATTAGCGGTGAGTT+TGG - Chr6:95578726-95578745 None:intergenic 50.0%
CCGGAGAAGGGAACAAGTCA+TGG + Chr6:95573660-95573679 MsG0680034852.01.T01:CDS 55.0%
GCTAAAGACAACACTGGCCG+GGG + Chr6:95575883-95575902 MsG0680034852.01.T01:intron 55.0%
GGGACAACCATGTGTACAGC+TGG - Chr6:95577255-95577274 None:intergenic 55.0%
GTGGCTCCTAAGGCCATTTG+AGG - Chr6:95578007-95578026 None:intergenic 55.0%
!! TGTTATCGGTGTCGGCGTGT+CGG - Chr6:95579455-95579474 None:intergenic 55.0%
TCGACAACGTCGCCGGAGAA+GGG + Chr6:95573648-95573667 MsG0680034852.01.T01:CDS 60.0%
TTCTCCGGCGACGTTGTCGA+CGG - Chr6:95573648-95573667 None:intergenic 60.0%
GTCGACAACGTCGCCGGAGA+AGG + Chr6:95573647-95573666 MsG0680034852.01.T01:CDS 65.0%
! GGTGCCGTCGACAACGTCGC+CGG + Chr6:95573641-95573660 MsG0680034852.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 95573617 95581325 95573617 ID=MsG0680034852.01;Name=MsG0680034852.01
Chr6 mRNA 95573617 95581325 95573617 ID=MsG0680034852.01.T01;Parent=MsG0680034852.01;Name=MsG0680034852.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|0.66|0.5|4|0|378
Chr6 exon 95573617 95573847 95573617 ID=MsG0680034852.01.T01:exon:6467;Parent=MsG0680034852.01.T01
Chr6 exon 95578876 95579244 95578876 ID=MsG0680034852.01.T01:exon:6468;Parent=MsG0680034852.01.T01
Chr6 exon 95580259 95580740 95580259 ID=MsG0680034852.01.T01:exon:6469;Parent=MsG0680034852.01.T01
Chr6 exon 95581271 95581325 95581271 ID=MsG0680034852.01.T01:exon:6470;Parent=MsG0680034852.01.T01
Chr6 CDS 95573617 95573847 95573617 ID=MsG0680034852.01.T01:cds;Parent=MsG0680034852.01.T01
Chr6 CDS 95578876 95579244 95578876 ID=MsG0680034852.01.T01:cds;Parent=MsG0680034852.01.T01
Chr6 CDS 95580259 95580740 95580259 ID=MsG0680034852.01.T01:cds;Parent=MsG0680034852.01.T01
Chr6 CDS 95581271 95581325 95581271 ID=MsG0680034852.01.T01:cds;Parent=MsG0680034852.01.T01
Gene Sequence

>MsG0680034852.01.T01

ATGAAGAATCATTATGCTGCTGCTGGTGCCGTCGACAACGTCGCCGGAGAAGGGAACAAGTCATGGAAGTCAATTGGAACAGGAAGCCATGTTTTTGTGAAGAGGGTTATGCAAATGATTATGTTTCTTGTTGCTTTTGCTGTGTTGTGGATGTTTCTTTATAACAATTCTGCTTCTCCTTTTGGTCTTCCTGCTACTATCTCACATTACTTCAATGGTATCTCTACACAAGAATACTACGATCCAAAGCTAAAGAGTGTTCTTAAACAAGCATCAATGAAGGGTAAAACAGTGATAATCACAACATTGAATGATGCATGGGCTGAACCAGGTTCAATATTTGATCAATTTCTTGAGAGTTTTCAAATTGGTGGGAACCAAACACAAAAGCTATTGGATCATCTTGTGGTAATAACATGGGACCAAAAAGCATACTCTCGTTGCAATGCTTTGCACAAATATTGTTACCAACTTCAAACTAAAGGTGACAATTTCACCAATGAAGCTTTTTTCATGACTCCAACCTACTTACACATGATGTGGAGAAGAATTGAATTTCTTGGTGCTGTTCTTCATTTGGGATATAGCTTTGTGTTCACGGACACTGATATAATGTGGCTAAGAGATCCATTCAAACAATTTTACAAAGATGCAGATTTTCAAATTGCTTGTGATTATTTCAATGGAAACTCCTTTGACATGCACAACTATCCAAATGGAGGATTCACATATGTAAAATCAAATCCAAGAACAATTTGGTTCTACAAATTTTGGTTCAACTCTAGAGAAACATATCCAACTATGCATGATCAAGATGTTCTTAACAAGATCAAAATGCATCCCTTAATTACAAATAAGAAGCTTAAGATTAGGTTCTTAAGCACAAGCTATTTTGGAGGGTTTTGTCAATCTAGCAAGGATTTTGGTAAAGCTTTAACAATGCATGCTAATTGTTGTGTTGGCTTGGAGAACAAGGTTAATGATCTTAAGATTTTGCTTGAGGATTGGAAGAAGTATATGGCATTGCCTGAAGATAAGAGAAAAACTTCACACCCTTCTTGGAGTGTGCCAAAAAGTTGCAGGGGTTCCTTTGAACGTAACAAAGAAAGGCTGAACAAAAACAAAGGGAGGTCGTAA
Protein sequence

>MsG0680034852.01.T01

MKNHYAAAGAVDNVAGEGNKSWKSIGTGSHVFVKRVMQMIMFLVAFAVLWMFLYNNSASPFGLPATISHYFNGISTQEYYDPKLKSVLKQASMKGKTVIITTLNDAWAEPGSIFDQFLESFQIGGNQTQKLLDHLVVITWDQKAYSRCNALHKYCYQLQTKGDNFTNEAFFMTPTYLHMMWRRIEFLGAVLHLGYSFVFTDTDIMWLRDPFKQFYKDADFQIACDYFNGNSFDMHNYPNGGFTYVKSNPRTIWFYKFWFNSRETYPTMHDQDVLNKIKMHPLITNKKLKIRFLSTSYFGGFCQSSKDFGKALTMHANCCVGLENKVNDLKILLEDWKKYMALPEDKRKTSHPSWSVPKSCRGSFERNKERLNKNKGRS*