Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025876.01.T01 | XP_003613416.2 | 96.591 | 176 | 6 | 0 | 26 | 201 | 193 | 368 | 7.88E-117 | 347 |
MsG0580025876.01.T02 | XP_003613416.2 | 95.652 | 69 | 3 | 0 | 1 | 69 | 300 | 368 | 6.76E-37 | 136 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025876.01.T01 | O04529 | 67.808 | 146 | 46 | 1 | 28 | 172 | 192 | 337 | 3.32E-65 | 208 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025876.01.T01 | G7K5L1 | 96.591 | 176 | 6 | 0 | 26 | 201 | 193 | 368 | 3.77e-117 | 347 |
MsG0580025876.01.T02 | G7K5L1 | 95.652 | 69 | 3 | 0 | 1 | 69 | 300 | 368 | 3.23e-37 | 136 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048302.01 | MsG0580025876.01 | 0.803577 | 3.262705e-49 | 1.645539e-46 |
MsG0080048345.01 | MsG0580025876.01 | 0.814856 | 1.244996e-51 | 8.448317e-49 |
MsG0180000019.01 | MsG0580025876.01 | 0.801345 | 9.406553e-49 | 4.481771e-46 |
MsG0180001050.01 | MsG0580025876.01 | 0.864679 | 1.022398e-64 | 3.237494e-61 |
MsG0180001053.01 | MsG0580025876.01 | 0.818406 | 1.992909e-52 | 1.490574e-49 |
MsG0180003240.01 | MsG0580025876.01 | 0.853255 | 2.697274e-61 | 5.792523e-58 |
MsG0180004203.01 | MsG0580025876.01 | 0.807296 | 5.416229e-50 | 3.005716e-47 |
MsG0180004562.01 | MsG0580025876.01 | 0.860477 | 2.009788e-63 | 5.501502e-60 |
MsG0180005357.01 | MsG0580025876.01 | 0.816764 | 4.674180e-52 | 3.341729e-49 |
MsG0180005996.01 | MsG0580025876.01 | 0.830835 | 2.347830e-55 | 2.502755e-52 |
MsG0280011041.01 | MsG0580025876.01 | 0.817472 | 3.239590e-52 | 2.361623e-49 |
MsG0280011042.01 | MsG0580025876.01 | 0.831535 | 1.580033e-55 | 1.719682e-52 |
MsG0280011053.01 | MsG0580025876.01 | 0.844042 | 9.655185e-59 | 1.539706e-55 |
MsG0280011350.01 | MsG0580025876.01 | 0.800596 | 1.338521e-48 | 6.257429e-46 |
MsG0380011613.01 | MsG0580025876.01 | 0.867680 | 1.144831e-65 | 4.031158e-62 |
MsG0380013300.01 | MsG0580025876.01 | 0.815012 | 1.149844e-51 | 7.835912e-49 |
MsG0380013449.01 | MsG0580025876.01 | 0.826708 | 2.338611e-54 | 2.210107e-51 |
MsG0380013452.01 | MsG0580025876.01 | 0.813390 | 2.622865e-51 | 1.710673e-48 |
MsG0380013458.01 | MsG0580025876.01 | 0.810143 | 1.334583e-50 | 7.982493e-48 |
MsG0380014920.01 | MsG0580025876.01 | 0.815352 | 9.659785e-52 | 6.644294e-49 |
MsG0480018500.01 | MsG0580025876.01 | 0.851003 | 1.177625e-60 | 2.350084e-57 |
MsG0480021135.01 | MsG0580025876.01 | 0.814465 | 1.519935e-51 | 1.020634e-48 |
MsG0480022125.01 | MsG0580025876.01 | 0.858234 | 9.476568e-63 | 2.401992e-59 |
MsG0480022680.01 | MsG0580025876.01 | 0.812293 | 4.559873e-51 | 2.888081e-48 |
MsG0480022736.01 | MsG0580025876.01 | 0.819515 | 1.115180e-52 | 8.600302e-50 |
MsG0580025876.01 | MsG0580027073.01 | 0.803653 | 3.146479e-49 | 1.589885e-46 |
MsG0580025876.01 | MsG0580027227.01 | 0.835512 | 1.607470e-56 | 1.970025e-53 |
MsG0580025876.01 | MsG0580028758.01 | 0.809565 | 1.776982e-50 | 1.046874e-47 |
MsG0580025876.01 | MsG0580028999.01 | 0.801537 | 8.591702e-49 | 4.113371e-46 |
MsG0580025876.01 | MsG0580029555.01 | 0.818803 | 1.619948e-52 | 1.224811e-49 |
MsG0580025876.01 | MsG0580029930.01 | 0.822608 | 2.162281e-53 | 1.818879e-50 |
MsG0580025876.01 | MsG0680031429.01 | 0.826097 | 3.270481e-54 | 3.037430e-51 |
MsG0580025876.01 | MsG0680035496.01 | 0.826149 | 3.178623e-54 | 2.956544e-51 |
MsG0580025876.01 | MsG0780038123.01 | 0.822295 | 2.557447e-53 | 2.131946e-50 |
MsG0580025876.01 | MsG0780039334.01 | 0.837801 | 4.195624e-57 | 5.511638e-54 |
MsG0580025876.01 | MsG0780039472.01 | 0.804539 | 2.057490e-49 | 1.063594e-46 |
MsG0580025876.01 | MsG0780039968.01 | 0.833240 | 5.973880e-56 | 6.839122e-53 |
MsG0580025876.01 | MsG0780040060.01 | 0.800507 | 1.395591e-48 | 6.509437e-46 |
MsG0580025876.01 | MsG0780040480.01 | 0.811276 | 7.590801e-51 | 4.678498e-48 |
MsG0580025876.01 | MsG0780041556.01 | 0.805511 | 1.288495e-49 | 6.829424e-47 |
MsG0580025876.01 | MsG0880043715.01 | 0.801148 | 1.032310e-48 | 4.894108e-46 |
MsG0580025876.01 | MsG0880043824.01 | 0.809837 | 1.552881e-50 | 9.214746e-48 |
MsG0580025876.01 | MsG0880044669.01 | 0.857125 | 2.020139e-62 | 4.933617e-59 |
MsG0580025876.01 | MsG0880045861.01 | 0.807672 | 4.508031e-50 | 2.526184e-47 |
MsG0580025876.01 | MsG0880046975.01 | 0.807320 | 5.354424e-50 | 2.973292e-47 |
MsG0580025876.01 | MsG0880046996.01 | 0.802721 | 4.905510e-49 | 2.420406e-46 |
MsG0580025876.01 | MsG0880047081.01 | 0.813189 | 2.902453e-51 | 1.882535e-48 |
MsG0580025876.01 | MsG0880047486.01 | 0.823695 | 1.206042e-53 | 1.046204e-50 |
MsG0580025876.01 | MsG0880047491.01 | 0.816398 | 5.643720e-52 | 3.994727e-49 |
MsG0380016644.01 | MsG0580025876.01 | 0.844549 | 7.057606e-59 | 1.143399e-55 |
MsG0280007369.01 | MsG0580025876.01 | 0.818821 | 1.604748e-52 | 1.213956e-49 |
MsG0280007391.01 | MsG0580025876.01 | 0.800933 | 1.142422e-48 | 5.386792e-46 |
MsG0280008117.01 | MsG0580025876.01 | 0.806458 | 8.147254e-50 | 4.424458e-47 |
MsG0280009394.01 | MsG0580025876.01 | 0.819444 | 1.157809e-52 | 8.911324e-50 |
MsG0280010415.01 | MsG0580025876.01 | 0.803220 | 3.867758e-49 | 1.932762e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025876.01.T01 | MTR_5g036410 | 96.591 | 176 | 6 | 0 | 26 | 201 | 193 | 368 | 9.55e-121 | 347 |
MsG0580025876.01.T01 | MTR_8g062770 | 70.186 | 161 | 48 | 0 | 28 | 188 | 195 | 355 | 8.74e-76 | 232 |
MsG0580025876.01.T01 | MTR_5g012680 | 56.250 | 176 | 70 | 3 | 28 | 201 | 184 | 354 | 8.23e-62 | 196 |
MsG0580025876.01.T01 | MTR_8g005900 | 57.143 | 161 | 67 | 1 | 28 | 188 | 178 | 336 | 3.74e-61 | 194 |
MsG0580025876.01.T01 | MTR_6g008480 | 41.447 | 152 | 67 | 2 | 27 | 158 | 180 | 329 | 5.39e-31 | 115 |
MsG0580025876.01.T01 | MTR_5g036080 | 48.175 | 137 | 60 | 6 | 27 | 161 | 194 | 321 | 2.61e-28 | 108 |
MsG0580025876.01.T01 | MTR_5g036083 | 38.372 | 172 | 71 | 5 | 6 | 176 | 145 | 282 | 1.97e-24 | 98.2 |
MsG0580025876.01.T01 | MTR_5g036087 | 34.500 | 200 | 112 | 4 | 6 | 201 | 164 | 348 | 7.41e-22 | 91.7 |
MsG0580025876.01.T01 | MTR_5g036290 | 35.417 | 192 | 101 | 7 | 14 | 201 | 196 | 368 | 2.73e-21 | 90.1 |
MsG0580025876.01.T01 | MTR_5g036270 | 38.776 | 147 | 80 | 5 | 27 | 163 | 167 | 313 | 3.79e-20 | 86.7 |
MsG0580025876.01.T01 | MTR_5g036093 | 35.912 | 181 | 95 | 7 | 27 | 201 | 147 | 312 | 1.14e-19 | 85.1 |
MsG0580025876.01.T01 | MTR_5g036360 | 36.667 | 150 | 78 | 4 | 14 | 160 | 186 | 321 | 2.61e-19 | 84.7 |
MsG0580025876.01.T01 | MTR_5g036310 | 35.366 | 164 | 91 | 6 | 42 | 201 | 157 | 309 | 1.59e-15 | 73.6 |
MsG0580025876.01.T02 | MTR_5g036410 | 95.652 | 69 | 3 | 0 | 1 | 69 | 300 | 368 | 8.19e-41 | 136 |
MsG0580025876.01.T02 | MTR_8g062770 | 53.571 | 56 | 26 | 0 | 1 | 56 | 300 | 355 | 2.62e-13 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025876.01.T01 | AT1G70170 | 67.808 | 146 | 46 | 1 | 28 | 172 | 192 | 337 | 3.38e-66 | 208 |
MsG0580025876.01.T01 | AT2G45040 | 64.493 | 138 | 47 | 1 | 28 | 165 | 167 | 302 | 2.41e-60 | 192 |
MsG0580025876.01.T01 | AT1G24140 | 58.065 | 155 | 63 | 1 | 28 | 180 | 196 | 350 | 2.08e-59 | 191 |
MsG0580025876.01.T01 | AT4G16640 | 54.913 | 173 | 74 | 2 | 27 | 199 | 188 | 356 | 6.96e-58 | 186 |
MsG0580025876.01.T01 | AT1G59970 | 57.962 | 157 | 63 | 2 | 27 | 180 | 179 | 335 | 5.88e-52 | 171 |
MsG0580025876.01.T02 | AT1G70170 | 60.000 | 40 | 16 | 0 | 1 | 40 | 298 | 337 | 1.05e-11 | 58.5 |
Find 39 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGAAATAGGTCATTTATT+AGG | 0.161352 | 5:-25732639 | MsG0580025876.01.T01:CDS |
CAAGGGATTCAGATGCTTTA+TGG | 0.164417 | 5:-25732528 | MsG0580025876.01.T01:CDS |
AGTTCATCAGATATTAAAAT+AGG | 0.204054 | 5:-25732843 | MsG0580025876.01.T01:CDS |
GTAGTTGTCCCAGTAAAATT+AGG | 0.215410 | 5:+25732498 | None:intergenic |
ATGAAATAGGTCATTTATTA+GGG | 0.288245 | 5:-25732638 | MsG0580025876.01.T01:CDS |
AAGGGATTCAGATGCTTTAT+GGG | 0.334917 | 5:-25732527 | MsG0580025876.01.T01:CDS |
AGGGATAGAGAATCTAGTTT+TGG | 0.345074 | 5:-25732465 | MsG0580025876.01.T01:CDS |
GTTCATCAGATATTAAAATA+GGG | 0.348740 | 5:-25732842 | MsG0580025876.01.T01:CDS |
ATAGGTCATTTATTAGGGTT+AGG | 0.349255 | 5:-25732633 | MsG0580025876.01.T01:CDS |
TCTTTGGTGTTTCTTGGGTT+TGG | 0.360778 | 5:-25732414 | MsG0580025876.01.T01:CDS |
TAGTTGTCCCAGTAAAATTA+GGG | 0.403688 | 5:+25732499 | None:intergenic |
TTGCAAACGCGTTTAATCAA+TGG | 0.405880 | 5:-25732935 | MsG0580025876.01.T01:CDS |
TCTGTTGCGGTTCATGAAAT+AGG | 0.406415 | 5:-25732651 | MsG0580025876.01.T01:CDS |
GAAGCATTTGACGGAGTCCT+TGG | 0.447406 | 5:-25732792 | MsG0580025876.01.T01:CDS |
AAGTAAACGCGTTTAATCAA+TGG | 0.452002 | 5:-25732908 | MsG0580025876.01.T01:CDS |
TTTGTTCTTGAACTTATCGT+AGG | 0.452379 | 5:+25732579 | None:intergenic |
TAGGTCATTTATTAGGGTTA+GGG | 0.476335 | 5:-25732632 | MsG0580025876.01.T01:CDS |
CTTGAGGAGGATGATATTCA+AGG | 0.479588 | 5:-25732546 | MsG0580025876.01.T01:CDS |
GTACATAATAGCCTCTTCAA+TGG | 0.498583 | 5:+25732602 | None:intergenic |
ACTTGGACAAAGCAGAAGAC+TGG | 0.508911 | 5:-25732728 | MsG0580025876.01.T01:CDS |
TTGTTCTTGAACTTATCGTA+GGG | 0.525939 | 5:+25732580 | None:intergenic |
GGACAACTACTGCTACTTCG+AGG | 0.530572 | 5:-25732485 | MsG0580025876.01.T01:CDS |
GCAGAAGACTGGGTAGTTAG+CGG | 0.544338 | 5:-25732717 | MsG0580025876.01.T01:CDS |
AACGTTTCGTTGCGTCGTCG+AGG | 0.556191 | 5:+25732959 | None:intergenic |
AACTGATGGAAGGTTACACT+TGG | 0.558584 | 5:-25732745 | MsG0580025876.01.T01:CDS |
AGGGCATTCTTCCATTGAAG+AGG | 0.560714 | 5:-25732613 | MsG0580025876.01.T01:CDS |
GGCGACGGAGAAGCATTTGA+CGG | 0.569294 | 5:-25732801 | MsG0580025876.01.T01:CDS |
TACAGTGGGGACCATGGCGA+CGG | 0.572091 | 5:-25732816 | MsG0580025876.01.T01:CDS |
TTGAGGAGGATGATATTCAA+GGG | 0.580266 | 5:-25732545 | MsG0580025876.01.T01:CDS |
GGTAGTTAGCGGAGATGTAA+CGG | 0.582074 | 5:-25732706 | MsG0580025876.01.T01:CDS |
CTTGGACAAAGCAGAAGACT+GGG | 0.588598 | 5:-25732727 | MsG0580025876.01.T01:CDS |
CAAATGCTTCTCCGTCGCCA+TGG | 0.589334 | 5:+25732805 | None:intergenic |
AAGTGTAACCTTCCATCAGT+TGG | 0.595259 | 5:+25732747 | None:intergenic |
GACAACTACTGCTACTTCGA+GGG | 0.599729 | 5:-25732484 | MsG0580025876.01.T01:CDS |
AACAAAGAAAGTTGAACTTG+AGG | 0.601323 | 5:-25732562 | MsG0580025876.01.T01:CDS |
AAAGAAAGTTGAACTTGAGG+AGG | 0.606210 | 5:-25732559 | MsG0580025876.01.T01:CDS |
AAGCGTGTGCTAATGTTCCA+AGG | 0.614495 | 5:+25732775 | None:intergenic |
TGTTGACTTAGAATCTGTTG+CGG | 0.625824 | 5:-25732664 | MsG0580025876.01.T01:CDS |
TTCGCTGGGATCGAAAGCAT+AGG | 0.636695 | 5:+25732984 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTTCATCAGATATTAAAAT+AGG | - | Chr5:25732536-25732555 | MsG0580025876.01.T01:CDS | 20.0% |
!! | ATGAAATAGGTCATTTATTA+GGG | - | Chr5:25732741-25732760 | MsG0580025876.01.T01:CDS | 20.0% |
!! | GTTCATCAGATATTAAAATA+GGG | - | Chr5:25732537-25732556 | MsG0580025876.01.T01:CDS | 20.0% |
! | CATGAAATAGGTCATTTATT+AGG | - | Chr5:25732740-25732759 | MsG0580025876.01.T01:CDS | 25.0% |
!! | ATTAAAATAGGGTTTTACAG+TGG | - | Chr5:25732548-25732567 | MsG0580025876.01.T01:CDS | 25.0% |
!! | TTAAAATAGGGTTTTACAGT+GGG | - | Chr5:25732549-25732568 | MsG0580025876.01.T01:CDS | 25.0% |
AACAAAGAAAGTTGAACTTG+AGG | - | Chr5:25732817-25732836 | MsG0580025876.01.T01:CDS | 30.0% | |
AAGTAAACGCGTTTAATCAA+TGG | - | Chr5:25732471-25732490 | MsG0580025876.01.T01:CDS | 30.0% | |
ATAGGTCATTTATTAGGGTT+AGG | - | Chr5:25732746-25732765 | MsG0580025876.01.T01:CDS | 30.0% | |
TAGGTCATTTATTAGGGTTA+GGG | - | Chr5:25732747-25732766 | MsG0580025876.01.T01:CDS | 30.0% | |
TAGTTGTCCCAGTAAAATTA+GGG | + | Chr5:25732883-25732902 | None:intergenic | 30.0% | |
TTGTTCTTGAACTTATCGTA+GGG | + | Chr5:25732802-25732821 | None:intergenic | 30.0% | |
TTTGTTCTTGAACTTATCGT+AGG | + | Chr5:25732803-25732822 | None:intergenic | 30.0% | |
! | TAAAATAGGGTTTTACAGTG+GGG | - | Chr5:25732550-25732569 | MsG0580025876.01.T01:CDS | 30.0% |
!!! | TTTTGTCTTTGGTGTTTCTT+GGG | - | Chr5:25732960-25732979 | MsG0580025876.01.T01:CDS | 30.0% |
!!! | TTTTTGTCTTTGGTGTTTCT+TGG | - | Chr5:25732959-25732978 | MsG0580025876.01.T01:CDS | 30.0% |
AAAGAAAGTTGAACTTGAGG+AGG | - | Chr5:25732820-25732839 | MsG0580025876.01.T01:CDS | 35.0% | |
AAGGGATTCAGATGCTTTAT+GGG | - | Chr5:25732852-25732871 | MsG0580025876.01.T01:CDS | 35.0% | |
GTACATAATAGCCTCTTCAA+TGG | + | Chr5:25732780-25732799 | None:intergenic | 35.0% | |
GTAGTTGTCCCAGTAAAATT+AGG | + | Chr5:25732884-25732903 | None:intergenic | 35.0% | |
TTGAGGAGGATGATATTCAA+GGG | - | Chr5:25732834-25732853 | MsG0580025876.01.T01:CDS | 35.0% | |
TTGCAAACGCGTTTAATCAA+TGG | - | Chr5:25732444-25732463 | MsG0580025876.01.T01:CDS | 35.0% | |
! | GGTCTAACCCTAATTTTACT+GGG | - | Chr5:25732873-25732892 | MsG0580025876.01.T01:CDS | 35.0% |
!! | AGGGATAGAGAATCTAGTTT+TGG | - | Chr5:25732914-25732933 | MsG0580025876.01.T01:CDS | 35.0% |
!! | TGTTGACTTAGAATCTGTTG+CGG | - | Chr5:25732715-25732734 | MsG0580025876.01.T01:CDS | 35.0% |
!!! | GATAGAGAATCTAGTTTTGG+TGG | - | Chr5:25732917-25732936 | MsG0580025876.01.T01:CDS | 35.0% |
!!! | GGTGTCTTTGTTTTTGTCTT+TGG | - | Chr5:25732949-25732968 | MsG0580025876.01.T01:CDS | 35.0% |
AACTGATGGAAGGTTACACT+TGG | - | Chr5:25732634-25732653 | MsG0580025876.01.T01:CDS | 40.0% | |
AAGTGTAACCTTCCATCAGT+TGG | + | Chr5:25732635-25732654 | None:intergenic | 40.0% | |
CAAGGGATTCAGATGCTTTA+TGG | - | Chr5:25732851-25732870 | MsG0580025876.01.T01:CDS | 40.0% | |
CTTGAGGAGGATGATATTCA+AGG | - | Chr5:25732833-25732852 | MsG0580025876.01.T01:CDS | 40.0% | |
TCTGTTGCGGTTCATGAAAT+AGG | - | Chr5:25732728-25732747 | MsG0580025876.01.T01:CDS | 40.0% | |
! | GGGTCTAACCCTAATTTTAC+TGG | - | Chr5:25732872-25732891 | MsG0580025876.01.T01:CDS | 40.0% |
!! | CTTTTTCACCAACTGATGGA+AGG | - | Chr5:25732624-25732643 | MsG0580025876.01.T01:CDS | 40.0% |
!! | TCTTTGGTGTTTCTTGGGTT+TGG | - | Chr5:25732965-25732984 | MsG0580025876.01.T01:CDS | 40.0% |
!!! | CTAGTTTTGGTGGAAGACAT+GGG | - | Chr5:25732927-25732946 | MsG0580025876.01.T01:CDS | 40.0% |
!!! | TAGTTTTGGTGGAAGACATG+GGG | - | Chr5:25732928-25732947 | MsG0580025876.01.T01:CDS | 40.0% |
!!! | TCTAGTTTTGGTGGAAGACA+TGG | - | Chr5:25732926-25732945 | MsG0580025876.01.T01:CDS | 40.0% |
AAGCGTGTGCTAATGTTCCA+AGG | + | Chr5:25732607-25732626 | None:intergenic | 45.0% | |
ACTTGGACAAAGCAGAAGAC+TGG | - | Chr5:25732651-25732670 | MsG0580025876.01.T01:CDS | 45.0% | |
CTTGGACAAAGCAGAAGACT+GGG | - | Chr5:25732652-25732671 | MsG0580025876.01.T01:CDS | 45.0% | |
GGTAGTTAGCGGAGATGTAA+CGG | - | Chr5:25732673-25732692 | MsG0580025876.01.T01:CDS | 45.0% | |
! | AGGGCATTCTTCCATTGAAG+AGG | - | Chr5:25732766-25732785 | MsG0580025876.01.T01:CDS | 45.0% |
! | GACAACTACTGCTACTTCGA+GGG | - | Chr5:25732895-25732914 | MsG0580025876.01.T01:CDS | 45.0% |
!!! | CACGCTTTTTCACCAACTGA+TGG | - | Chr5:25732620-25732639 | MsG0580025876.01.T01:CDS | 45.0% |
GCAGAAGACTGGGTAGTTAG+CGG | - | Chr5:25732662-25732681 | MsG0580025876.01.T01:CDS | 50.0% | |
! | GAAGCATTTGACGGAGTCCT+TGG | - | Chr5:25732587-25732606 | MsG0580025876.01.T01:CDS | 50.0% |
! | GGACAACTACTGCTACTTCG+AGG | - | Chr5:25732894-25732913 | MsG0580025876.01.T01:CDS | 50.0% |
AACGTTTCGTTGCGTCGTCG+AGG | + | Chr5:25732423-25732442 | None:intergenic | 55.0% | |
CAAATGCTTCTCCGTCGCCA+TGG | + | Chr5:25732577-25732596 | None:intergenic | 55.0% | |
! | GGGTTTTACAGTGGGGACCA+TGG | - | Chr5:25732557-25732576 | MsG0580025876.01.T01:CDS | 55.0% |
!! | GGCGACGGAGAAGCATTTGA+CGG | - | Chr5:25732578-25732597 | MsG0580025876.01.T01:CDS | 55.0% |
TACAGTGGGGACCATGGCGA+CGG | - | Chr5:25732563-25732582 | MsG0580025876.01.T01:CDS | 60.0% | |
! | GCGTCGTCGAGGTTTTCGCT+GGG | + | Chr5:25732412-25732431 | None:intergenic | 60.0% |
! | TGCGTCGTCGAGGTTTTCGC+TGG | + | Chr5:25732413-25732432 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 25732398 | 25733003 | 25732398 | ID=MsG0580025876.01;Name=MsG0580025876.01 |
Chr5 | mRNA | 25732398 | 25733003 | 25732398 | ID=MsG0580025876.01.T01;Parent=MsG0580025876.01;Name=MsG0580025876.01.T01;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|201 |
Chr5 | exon | 25732398 | 25733003 | 25732398 | ID=MsG0580025876.01.T01:exon:5052;Parent=MsG0580025876.01.T01 |
Chr5 | CDS | 25732398 | 25733003 | 25732398 | ID=MsG0580025876.01.T01:cds;Parent=MsG0580025876.01.T01 |
Chr5 | mRNA | 25732398 | 25732607 | 25732398 | ID=MsG0580025876.01.T02;Parent=MsG0580025876.01;Name=MsG0580025876.01.T02;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|0|1|0|69 |
Chr5 | exon | 25732398 | 25732607 | 25732398 | ID=MsG0580025876.01.T02:exon:5053;Parent=MsG0580025876.01.T02 |
Chr5 | CDS | 25732398 | 25732607 | 25732398 | ID=MsG0580025876.01.T02:cds;Parent=MsG0580025876.01.T02 |
Gene Sequence |
Protein sequence |