AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009879.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009879.01.T01 MTR_2g072720 55.864 469 191 8 4 462 17 479 4.67e-158 456
MsG0280009879.01.T01 MTR_2g072730 53.696 460 191 11 18 462 8 460 1.61e-138 406
MsG0280009879.01.T01 MTR_4g032845 52.360 445 197 9 26 459 1 441 8.57e-130 383
MsG0280009879.01.T01 MTR_2g072650 70.833 240 24 2 224 462 45 239 1.84e-111 328
MsG0280009879.01.T01 MTR_1g025870 43.810 525 205 17 19 461 7 523 1.29e-107 329
MsG0280009879.01.T01 MTR_6g022350 41.962 479 206 12 27 441 5 475 1.09e-92 289
MsG0280009879.01.T01 MTR_8g006910 43.198 419 216 13 4 415 29 432 5.34e-85 271
MsG0280009879.01.T01 MTR_5g005700 38.809 487 252 14 15 462 15 494 3.25e-80 257
MsG0280009879.01.T01 MTR_3g018680 38.998 459 210 16 8 459 3 398 5.86e-79 251
MsG0280009879.01.T01 MTR_5g007090 37.238 478 250 15 1 449 1 457 9.81e-74 241
MsG0280009879.01.T01 MTR_2g072710 63.333 180 62 1 280 459 18 193 1.73e-69 219
MsG0280009879.01.T01 MTR_7g094030 35.181 469 268 16 11 460 11 462 3.21e-64 215
MsG0280009879.01.T01 MTR_5g007130 37.225 454 192 15 33 461 20 405 3.95e-62 207
MsG0280009879.01.T01 MTR_2g067210 38.734 395 194 12 1 369 31 403 8.26e-62 209
MsG0280009879.01.T01 MTR_1g115250 34.318 440 247 13 19 445 23 433 2.23e-60 204
MsG0280009879.01.T01 MTR_2g072530 32.063 446 280 11 27 460 12 446 9.92e-57 194
MsG0280009879.01.T01 MTR_2g082800 36.232 414 243 12 5 413 4 401 5.64e-56 191
MsG0280009879.01.T01 MTR_2g082880 33.333 438 250 16 27 451 9 417 1.91e-46 166
MsG0280009879.01.T01 MTR_2g082850 33.511 376 221 12 6 365 2 364 5.81e-43 155
MsG0280009879.01.T01 MTR_5g007110 59.677 124 48 2 339 462 1 122 1.10e-39 139
MsG0280009879.01.T01 MTR_1g115245 35.849 265 150 8 19 276 17 268 4.17e-36 135
MsG0280009879.01.T01 MTR_2g082780 37.681 207 117 7 31 233 15 213 1.58e-24 101
MsG0280009879.01.T01 MTR_4g080590 25.541 462 309 14 7 451 2 445 3.73e-24 105
MsG0280009879.01.T01 MTR_5g005690 24.733 469 291 14 32 451 25 480 1.37e-21 97.8
MsG0280009879.01.T01 MTR_7g094050 52.041 98 45 1 331 426 5 102 1.61e-21 90.5
MsG0280009879.01.T01 MTR_4g080787 26.087 460 287 17 20 445 11 451 1.47e-20 94.7
MsG0280009879.01.T01 MTR_6g022330 33.700 273 148 9 71 334 121 369 2.30e-20 94.7
MsG0280009879.01.T01 MTR_6g022330 53.846 78 25 3 1 77 1 68 6.69e-13 71.6
MsG0280009879.01.T01 MTR_3g048290 24.619 459 294 18 19 445 14 452 1.06e-19 92.0
MsG0280009879.01.T01 MTR_7g023310 23.624 436 293 12 19 432 17 434 1.05e-18 88.6
MsG0280009879.01.T01 MTR_8g467800 22.699 489 301 12 13 462 5 455 4.41e-18 86.7
MsG0280009879.01.T01 MTR_2g082860 43.820 89 50 0 9 97 8 96 5.81e-17 77.4
MsG0280009879.01.T01 MTR_5g039950 25.114 438 235 18 19 426 14 388 3.65e-16 80.9
MsG0280009879.01.T01 MTR_4g032730 24.554 448 266 16 24 423 11 434 1.75e-15 79.0
MsG0280009879.01.T01 MTR_5g006480 57.317 82 27 4 379 459 16 90 5.61e-15 70.9
MsG0280009879.01.T01 MTR_4g080590 24.474 380 254 12 7 371 2 363 3.39e-14 74.3
MsG0280009879.01.T01 MTR_5g063450 29.630 297 173 12 1 291 1 267 8.97e-14 73.2
MsG0280009879.01.T01 MTR_1g021820 27.660 235 143 9 11 234 11 229 2.00e-13 72.4
MsG0280009879.01.T01 MTR_2g005990 30.392 204 123 8 28 217 6 204 6.61e-13 70.5
MsG0280009879.01.T01 MTR_5g039970 26.888 331 219 10 19 338 10 328 9.16e-13 69.7
MsG0280009879.01.T01 MTR_3g467400 33.898 118 67 3 28 139 3 115 2.01e-12 68.9
MsG0280009879.01.T01 MTR_8g014160 29.268 246 127 12 23 241 36 261 3.71e-12 68.6
MsG0280009879.01.T01 MTR_8g062270 25.517 435 257 18 28 423 16 422 4.20e-12 68.2
MsG0280009879.01.T01 MTR_8g467800 32.990 97 63 1 13 109 5 99 4.25e-12 67.8
MsG0280009879.01.T01 MTR_0049s0110 24.703 421 266 14 28 432 8 393 7.13e-12 67.4
MsG0280009879.01.T01 MTR_7g056447 42.553 94 46 3 22 115 3 88 7.92e-12 66.2
MsG0280009879.01.T01 MTR_4g036215 50.602 83 35 3 371 450 86 165 7.95e-12 66.2
MsG0280009879.01.T01 MTR_7g088260 26.471 408 222 15 27 424 90 429 8.80e-12 67.4
MsG0280009879.01.T01 MTR_5g084070 23.636 440 262 18 19 429 4 398 1.19e-11 67.0
MsG0280009879.01.T01 MTR_3g107100 38.202 89 51 1 24 112 7 91 1.58e-11 66.2
MsG0280009879.01.T01 MTR_3g023630 45.238 84 39 2 28 109 8 86 1.76e-11 65.9
MsG0280009879.01.T01 MTR_7g032380 42.045 88 44 2 28 113 11 93 3.83e-11 64.7
MsG0280009879.01.T01 MTR_1g021825 28.755 233 138 8 13 234 2 217 5.50e-11 64.7
MsG0280009879.01.T01 MTR_1g021825 28.755 233 138 8 13 234 73 288 6.16e-11 64.7
MsG0280009879.01.T01 MTR_7g034110 32.090 134 81 5 28 159 11 136 6.31e-11 64.3
MsG0280009879.01.T01 MTR_7g098590 47.692 65 30 1 13 77 7 67 7.12e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009879.01.T01 AT3G14710 28.731 449 272 14 27 459 25 441 3.64e-28 116
MsG0280009879.01.T01 AT3G59240 29.032 434 255 17 27 423 7 424 1.61e-23 103
MsG0280009879.01.T01 AT4G14096 26.905 420 270 15 28 423 8 414 2.30e-22 99.8
MsG0280009879.01.T01 AT4G14096 26.905 420 270 15 28 423 8 414 2.30e-22 99.8
MsG0280009879.01.T01 AT4G14103 26.988 415 251 16 28 423 8 389 6.47e-20 92.4
MsG0280009879.01.T01 AT3G59200 27.045 440 260 18 28 423 7 429 1.21e-19 92.0
MsG0280009879.01.T01 AT4G14103 27.747 364 233 14 27 372 7 358 1.74e-19 90.5
MsG0280009879.01.T01 AT4G14103 27.747 364 233 14 27 372 7 358 1.74e-19 90.5
MsG0280009879.01.T01 AT5G22730 26.267 434 255 15 27 423 27 432 1.84e-19 91.3
MsG0280009879.01.T01 AT5G22730 26.267 434 255 15 27 423 27 432 1.84e-19 91.3
MsG0280009879.01.T01 AT3G49150 24.494 445 277 16 27 430 15 441 6.12e-19 89.7
MsG0280009879.01.T01 AT3G58860 26.446 363 235 13 24 372 3 347 1.19e-18 88.6
MsG0280009879.01.T01 AT5G22610 26.424 439 271 17 26 443 16 423 2.04e-18 87.8
MsG0280009879.01.T01 AT5G56690 26.866 402 245 14 31 408 5 381 3.25e-18 86.7
MsG0280009879.01.T01 AT5G53840 25.647 425 259 16 27 427 17 408 1.46e-17 85.1
MsG0280009879.01.T01 AT3G59200 27.467 375 222 14 28 369 7 364 2.10e-17 84.0
MsG0280009879.01.T01 AT5G56440 24.681 470 271 18 28 455 2 430 2.14e-16 81.6
MsG0280009879.01.T01 AT3G50710 24.138 435 292 13 28 446 2 414 2.52e-16 81.3
MsG0280009879.01.T01 AT1G16930 25.968 439 260 17 28 428 15 426 8.79e-16 79.7
MsG0280009879.01.T01 AT1G16930 25.968 439 260 17 28 428 15 426 8.79e-16 79.7
MsG0280009879.01.T01 AT1G16930 25.968 439 260 17 28 428 15 426 8.79e-16 79.7
MsG0280009879.01.T01 AT1G78750 25.806 434 286 18 15 425 6 426 1.07e-15 79.7
MsG0280009879.01.T01 AT1G78750 25.806 434 286 18 15 425 6 426 1.07e-15 79.7
MsG0280009879.01.T01 AT3G59190 25.328 458 269 18 27 423 11 456 1.15e-15 79.7
MsG0280009879.01.T01 AT1G58310 25.376 465 259 19 28 423 8 453 1.48e-15 79.3
MsG0280009879.01.T01 AT1G78760 25.708 459 269 23 18 441 7 428 1.50e-15 79.0
MsG0280009879.01.T01 AT5G38392 42.991 107 55 2 28 128 2 108 1.65e-15 75.9
MsG0280009879.01.T01 AT3G58880 40.187 107 58 1 28 128 3 109 2.81e-15 78.2
MsG0280009879.01.T01 AT2G42730 24.722 449 282 18 27 439 4 432 9.36e-15 76.6
MsG0280009879.01.T01 AT5G22610 25.983 458 279 17 26 443 16 453 1.54e-14 76.3
MsG0280009879.01.T01 AT4G26340 24.306 432 265 17 28 434 2 396 1.68e-14 75.5
MsG0280009879.01.T01 AT2G29930 25.290 431 274 13 27 427 11 423 2.64e-14 75.1
MsG0280009879.01.T01 AT2G29930 25.290 431 274 13 27 427 11 423 2.64e-14 75.1
MsG0280009879.01.T01 AT3G03040 26.374 455 280 19 28 443 2 440 2.70e-14 75.1
MsG0280009879.01.T01 AT3G59190 32.540 126 78 2 27 146 11 135 3.56e-14 74.3
MsG0280009879.01.T01 AT3G58940 38.017 121 68 2 28 142 2 121 4.60e-14 75.1
MsG0280009879.01.T01 AT3G58940 38.017 121 68 2 28 142 2 121 4.60e-14 75.1
MsG0280009879.01.T01 AT3G58900 27.016 248 136 8 28 266 2 213 1.07e-13 72.4
MsG0280009879.01.T01 AT3G59230 40.385 104 56 1 27 124 11 114 1.19e-13 73.2
MsG0280009879.01.T01 AT3G58900 27.016 248 136 8 28 266 2 213 1.26e-13 72.0
MsG0280009879.01.T01 AT3G58900 27.016 248 136 8 28 266 2 213 1.26e-13 72.0
MsG0280009879.01.T01 AT3G59000 39.252 107 59 1 28 128 2 108 1.31e-13 72.4
MsG0280009879.01.T01 AT5G38396 25.000 460 300 15 28 453 2 450 1.88e-13 72.8
MsG0280009879.01.T01 AT3G58900 26.744 258 144 8 28 276 2 223 2.13e-13 72.4
MsG0280009879.01.T01 AT3G59000 39.252 107 59 1 28 128 2 108 3.78e-13 71.6
MsG0280009879.01.T01 AT3G58930 33.333 141 85 3 28 161 2 140 1.19e-12 70.1
MsG0280009879.01.T01 AT3G58930 33.333 141 85 3 28 161 2 140 1.19e-12 70.1
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 5 185 1.41e-12 68.9
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 5 185 1.41e-12 68.9
MsG0280009879.01.T01 AT3G58930 31.373 153 94 3 28 170 2 153 1.47e-12 70.1
MsG0280009879.01.T01 AT3G58930 31.373 153 94 3 28 170 2 153 1.47e-12 70.1
MsG0280009879.01.T01 AT3G58930 31.373 153 94 3 28 170 2 153 1.47e-12 70.1
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 5 185 1.90e-12 68.9
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 5 185 1.90e-12 68.9
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 5 185 1.90e-12 68.9
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 5 185 1.90e-12 68.9
MsG0280009879.01.T01 AT2G29910 30.729 192 120 5 28 217 29 209 2.01e-12 68.9
MsG0280009879.01.T01 AT5G56370 30.000 190 118 5 28 213 2 180 3.01e-12 68.2
MsG0280009879.01.T01 AT5G22730 27.757 263 158 10 27 284 27 262 3.24e-12 68.6
MsG0280009879.01.T01 AT5G41840 26.615 387 228 17 28 371 14 387 3.37e-12 68.9
MsG0280009879.01.T01 AT5G56370 23.832 428 253 15 28 428 2 383 4.04e-12 68.2
MsG0280009879.01.T01 AT5G56370 23.832 428 253 15 28 428 2 383 4.04e-12 68.2
MsG0280009879.01.T01 AT4G13960 29.952 207 131 7 28 228 2 200 4.17e-12 68.6
MsG0280009879.01.T01 AT4G13960 29.952 207 131 7 28 228 2 200 4.17e-12 68.6
MsG0280009879.01.T01 AT1G55030 29.719 249 148 9 26 267 7 235 5.11e-12 68.2
MsG0280009879.01.T01 AT1G55030 29.719 249 148 9 26 267 17 245 5.14e-12 68.2
MsG0280009879.01.T01 AT4G00315 29.858 211 133 6 28 230 2 205 6.61e-12 67.8
MsG0280009879.01.T01 AT3G59170 29.474 190 96 7 27 189 6 184 6.76e-12 67.8
MsG0280009879.01.T01 AT4G10400 23.095 433 276 16 28 442 2 395 9.35e-12 67.0
MsG0280009879.01.T01 AT4G10400 23.095 433 276 16 28 442 2 395 9.35e-12 67.0
MsG0280009879.01.T01 AT4G10400 23.095 433 276 16 28 442 2 395 9.35e-12 67.0
MsG0280009879.01.T01 AT5G22720 24.301 465 270 14 11 429 8 436 1.22e-11 67.0
MsG0280009879.01.T01 AT5G56420 26.087 253 153 8 27 273 5 229 1.30e-11 66.6
MsG0280009879.01.T01 AT5G56420 26.087 253 153 8 27 273 5 229 1.30e-11 66.6
MsG0280009879.01.T01 AT5G56420 26.087 253 153 8 27 273 5 229 1.30e-11 66.6
MsG0280009879.01.T01 AT3G03030 23.218 435 284 15 28 423 2 425 1.45e-11 66.6
MsG0280009879.01.T01 AT5G22700 23.462 439 261 19 18 440 33 412 1.75e-11 66.2
MsG0280009879.01.T01 AT4G09920 29.524 210 131 8 28 230 2 201 2.10e-11 65.5
MsG0280009879.01.T01 AT4G09920 29.524 210 131 8 28 230 2 201 2.10e-11 65.5
MsG0280009879.01.T01 AT4G09920 29.524 210 131 8 28 230 2 201 2.12e-11 65.1
MsG0280009879.01.T01 AT4G09920 29.524 210 131 8 28 230 2 201 2.12e-11 65.1
MsG0280009879.01.T01 AT4G09920 29.524 210 131 8 28 230 2 201 2.12e-11 65.1
MsG0280009879.01.T01 AT3G28410 25.393 445 263 25 14 423 13 423 2.74e-11 65.9
MsG0280009879.01.T01 AT5G02700 25.522 431 243 22 28 423 27 414 2.77e-11 65.9
MsG0280009879.01.T01 AT5G56410 25.164 457 269 20 26 441 1 425 3.86e-11 65.5
MsG0280009879.01.T01 AT2G04230 21.940 433 301 13 27 443 12 423 4.62e-11 65.1
MsG0280009879.01.T01 AT3G51530 24.537 432 252 19 27 427 29 417 4.88e-11 65.1
MsG0280009879.01.T01 AT3G03030 30.935 139 85 3 28 156 2 139 4.88e-11 64.3
MsG0280009879.01.T01 AT3G26922 25.564 266 183 9 27 289 13 266 5.11e-11 63.9
MsG0280009879.01.T01 AT3G26922 25.564 266 183 9 27 289 13 266 5.11e-11 63.9
MsG0280009879.01.T01 AT5G22700 22.197 446 299 16 18 440 33 453 6.30e-11 64.7
MsG0280009879.01.T01 AT4G27050 24.605 443 269 18 28 427 4 424 8.11e-11 64.3
MsG0280009879.01.T01 AT4G27050 24.605 443 269 18 28 427 4 424 8.11e-11 64.3
MsG0280009879.01.T01 AT4G27050 24.605 443 269 18 28 427 4 424 8.11e-11 64.3
MsG0280009879.01.T01 AT4G27050 24.605 443 269 18 28 427 4 424 8.11e-11 64.3
MsG0280009879.01.T01 AT4G27050 24.605 443 269 18 28 427 4 424 8.11e-11 64.3
MsG0280009879.01.T01 AT1G51370 26.991 226 123 6 14 236 5 191 8.40e-11 63.9
MsG0280009879.01.T01 AT1G66290 24.792 480 256 20 10 438 9 434 9.43e-11 64.3

Find 83 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTAAGGTTGTGAAATT+TGG 0.149059 2:+59860506 MsG0280009879.01.T01:CDS
CCCATCAAGGATGTTTATTT+TGG 0.160570 2:+59859223 MsG0280009879.01.T01:CDS
AACGCAGCCTGACATGTTTA+AGG 0.186711 2:-59859249 None:intergenic
GTGAAATTTGGAAGAGTTAA+TGG 0.192197 2:+59860518 MsG0280009879.01.T01:CDS
CGAAGTCATGGAAGAATTTA+AGG 0.200519 2:+59860640 MsG0280009879.01.T01:CDS
ACTTTCCACGCTTGAACTTT+TGG 0.239368 2:-59858996 None:intergenic
AAAGCTCAGCATTGCAAATT+CGG 0.282776 2:-59860036 None:intergenic
CTGAAAGAATTTACTTATGA+TGG 0.334011 2:+59859478 MsG0280009879.01.T01:CDS
CTCCGTTGCTAGTCAAGAAC+TGG 0.338272 2:+59860610 MsG0280009879.01.T01:CDS
ACTGTTATAAACATGGAGTT+TGG 0.340360 2:+59858689 None:intergenic
AAGAGATCCATGTATTTAGA+AGG 0.340631 2:-59859054 None:intergenic
TGAAATTTGGAAGAGTTAAT+GGG 0.363655 2:+59860519 MsG0280009879.01.T01:CDS
TCTGTTCTACAAAAGGAAAT+CGG 0.368797 2:+59858925 MsG0280009879.01.T01:CDS
TCCAAAATAAACATCCTTGA+TGG 0.379534 2:-59859224 None:intergenic
TTTACCAATTGCTCCTCATC+TGG 0.387679 2:+59859280 MsG0280009879.01.T01:CDS
GCAAAATCTATCTCATTTAA+CGG 0.390985 2:+59859643 MsG0280009879.01.T01:CDS
GAGTTTGGTTCAGCTTCATC+TGG 0.391052 2:+59858704 MsG0280009879.01.T01:CDS
TTGTTTCACATCCACACTTA+AGG 0.396843 2:+59860493 MsG0280009879.01.T01:CDS
AAAGCACGTAGTCCTGCTTC+TGG 0.399420 2:-59859595 None:intergenic
TCGGGTAGAACAGCCACATT+TGG 0.408752 2:-59860017 None:intergenic
TTCTTGTCACAAACGTTTCG+AGG 0.409885 2:-59859327 None:intergenic
ATGATTGTCTGTTCTACAAA+AGG 0.419594 2:+59858918 MsG0280009879.01.T01:CDS
ATGTGACTTATAAGCGATTC+GGG 0.423297 2:-59858800 None:intergenic
GTCACAAACGTTTCGAGGAC+TGG 0.424071 2:-59859322 None:intergenic
CAAGTGTGTTATCTAAGAAA+TGG 0.425414 2:+59858858 MsG0280009879.01.T01:CDS
CGATATGACAATCAAACATC+TGG 0.426338 2:-59859195 None:intergenic
TTGGAAGCCTTAAACATGTC+AGG 0.430238 2:+59859242 MsG0280009879.01.T01:CDS
AAGCTCAGCATTGCAAATTC+GGG 0.440583 2:-59860035 None:intergenic
CTTAAATTCTTCCATGACTT+CGG 0.443605 2:-59860639 None:intergenic
CGACGGATCTGACAGAATTA+CGG 0.444550 2:-59859518 None:intergenic
AATCTATTCTCATTTAAGAA+AGG 0.448231 2:+59860665 MsG0280009879.01.T01:CDS
TTTGCCTTATGCTTCTTATG+AGG 0.448614 2:-59858749 None:intergenic
AATGTGACTTATAAGCGATT+CGG 0.451991 2:-59858801 None:intergenic
GACGGATCTGACAGAATTAC+GGG 0.452300 2:-59859517 None:intergenic
CAAAATCTATCTCATTTAAC+GGG 0.454849 2:+59859644 MsG0280009879.01.T01:CDS
ATAGCCAGATGAGGAGCAAT+TGG 0.457358 2:-59859284 None:intergenic
AAGCGATTCGGGTAGGTTGT+TGG 0.460956 2:-59858789 None:intergenic
GTGCTAATATAATGCTAAGT+AGG 0.461063 2:+59859557 MsG0280009879.01.T01:CDS
CAACTCGGTTCATGAGATGA+TGG 0.482555 2:-59859430 None:intergenic
GGGAATATTCAAATTCGATA+AGG 0.482941 2:+59860442 MsG0280009879.01.T01:intron
TTGAGATGCAAGAGCTGAGA+AGG 0.499994 2:-59859134 None:intergenic
CTGTTCTACAAAAGGAAATC+GGG 0.500435 2:+59858926 MsG0280009879.01.T01:CDS
ATATATCCCTTCTAAATACA+TGG 0.507105 2:+59859047 MsG0280009879.01.T01:CDS
ATCTAAGTCCAGCTTGGTGA+TGG 0.511389 2:-59858897 None:intergenic
GCCCAGTTCTTGACTAGCAA+CGG 0.513794 2:-59860612 None:intergenic
CTAAGAAATGGATGTACCGC+TGG 0.517016 2:+59858870 MsG0280009879.01.T01:CDS
CCAAAATAAACATCCTTGAT+GGG 0.519186 2:-59859223 None:intergenic
CTGGATCTCCATCACCAAGC+TGG 0.521356 2:+59858889 MsG0280009879.01.T01:CDS
TATAATGCTAAGTAGGTGGC+AGG 0.527400 2:+59859564 MsG0280009879.01.T01:CDS
GTATGAGCATGAATTGCGTT+TGG 0.527864 2:+59860541 MsG0280009879.01.T01:CDS
AAAGCCTCATAAGAAGCATA+AGG 0.533144 2:+59858745 MsG0280009879.01.T01:CDS
TTAAACATGTCAGGCTGCGT+TGG 0.536902 2:+59859251 MsG0280009879.01.T01:CDS
AGGCCCATTCGTATCCTGAA+TGG 0.538633 2:-59859114 None:intergenic
TTTCGAGGACTGGTAAAGTA+AGG 0.539013 2:-59859312 None:intergenic
CTGTGATTGGTTAGGTGCAA+AGG 0.541617 2:+59859351 MsG0280009879.01.T01:CDS
AGTGTGGATGTGAAACAATC+TGG 0.546921 2:-59860488 None:intergenic
CAGGATGCAACTCCAGAAGC+AGG 0.556084 2:+59859583 MsG0280009879.01.T01:CDS
TTGTGACAAGAAACTGTGAT+TGG 0.561135 2:+59859338 MsG0280009879.01.T01:CDS
AAATTTCACAACCTTAAGTG+TGG 0.561735 2:-59860504 None:intergenic
TATCCATTCAGGATACGAAT+GGG 0.565798 2:+59859111 MsG0280009879.01.T01:CDS
ACTGGGCAAATCCGAAGTCA+TGG 0.565804 2:+59860628 MsG0280009879.01.T01:CDS
ATCTGGTGTTAGAACACGAA+AGG 0.573860 2:+59858721 MsG0280009879.01.T01:CDS
TCATATCGAAGTTCCCATCA+AGG 0.574348 2:+59859210 MsG0280009879.01.T01:CDS
ACAAGAAACTGTGATTGGTT+AGG 0.577730 2:+59859343 MsG0280009879.01.T01:CDS
GTTCATGAGATGATGGGCTA+CGG 0.583533 2:-59859423 None:intergenic
CTTCAGAAACTTTGTCAACA+AGG 0.584752 2:+59858961 MsG0280009879.01.T01:CDS
TGTGATTGGTTAGGTGCAAA+GGG 0.587465 2:+59859352 MsG0280009879.01.T01:CDS
GACTTATAAGCGATTCGGGT+AGG 0.589537 2:-59858796 None:intergenic
AACTCGGTTCATGAGATGAT+GGG 0.596172 2:-59859429 None:intergenic
AGAGATCCATGTATTTAGAA+GGG 0.597284 2:-59859053 None:intergenic
GTATCCATTCAGGATACGAA+TGG 0.599330 2:+59859110 MsG0280009879.01.T01:CDS
ACAATCATCTAAGTCCAGCT+TGG 0.601797 2:-59858903 None:intergenic
TTCTACAAAAGGAAATCGGG+TGG 0.604348 2:+59858929 MsG0280009879.01.T01:CDS
TATCTCATTTAACGGGTCTG+AGG 0.605178 2:+59859651 MsG0280009879.01.T01:CDS
CTAATATAATGCTAAGTAGG+TGG 0.609423 2:+59859560 MsG0280009879.01.T01:CDS
TCTGACCAAAAGTTCAAGCG+TGG 0.610173 2:+59858991 MsG0280009879.01.T01:CDS
GGTTCTCACACAACCAAATG+TGG 0.613833 2:+59860004 MsG0280009879.01.T01:intron
CAAGCATATTTAGCTATCGA+CGG 0.621832 2:-59859535 None:intergenic
GAAAATTCGATTTGACAACT+CGG 0.623691 2:-59859445 None:intergenic
TCCGTTGCTAGTCAAGAACT+GGG 0.630788 2:+59860611 MsG0280009879.01.T01:CDS
AAAATGGTATGGTGCTTGAG+AGG 0.665389 2:+59860579 MsG0280009879.01.T01:CDS
AAGGCTCAGATAGCCAGATG+AGG 0.674229 2:-59859293 None:intergenic
GCTTGGTGATGGAGATCCAG+CGG 0.675698 2:-59858886 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAATATAAGTTCTTA+AGG - Chr2:59859729-59859748 None:intergenic 10.0%
!! AAATATATTCAGTATTAGAA+AGG - Chr2:59859694-59859713 None:intergenic 15.0%
!! AATATATTCAGTATTAGAAA+GGG - Chr2:59859693-59859712 None:intergenic 15.0%
!! TTTCTAATACTGAATATATT+TGG + Chr2:59859693-59859712 MsG0280009879.01.T01:intron 15.0%
!!! AAAATTAGAGTTTTAAGAAT+CGG - Chr2:59860116-59860135 None:intergenic 15.0%
!! AAATATAAGTTCTTAAGGTT+TGG - Chr2:59859724-59859743 None:intergenic 20.0%
!! AATCTATTCTCATTTAAGAA+AGG + Chr2:59860665-59860684 MsG0280009879.01.T01:CDS 20.0%
!! TAATTGAATGTTATGTTATC+AGG + Chr2:59860290-59860309 MsG0280009879.01.T01:intron 20.0%
!!! ATTTTTTATGGAAAATGGTA+TGG + Chr2:59860568-59860587 MsG0280009879.01.T01:CDS 20.0%
!!! GAAGATTTTTTATTTTCTGT+GGG - Chr2:59859090-59859109 None:intergenic 20.0%
!!! GCTAAATTTTTTATGGAAAA+TGG + Chr2:59860563-59860582 MsG0280009879.01.T01:CDS 20.0%
!!! TATTTGATGATTAATCATCA+GGG + Chr2:59860422-59860441 MsG0280009879.01.T01:intron 20.0%
!!! TCTTAAAACTCTAATTTTCA+AGG + Chr2:59860118-59860137 MsG0280009879.01.T01:CDS 20.0%
!!! TTATTTGATGATTAATCATC+AGG + Chr2:59860421-59860440 MsG0280009879.01.T01:intron 20.0%
! ATATATCCCTTCTAAATACA+TGG + Chr2:59859047-59859066 MsG0280009879.01.T01:CDS 25.0%
! CAAAATCTATCTCATTTAAC+GGG + Chr2:59859644-59859663 MsG0280009879.01.T01:CDS 25.0%
! CTGAAAGAATTTACTTATGA+TGG + Chr2:59859478-59859497 MsG0280009879.01.T01:CDS 25.0%
! GCAAAATCTATCTCATTTAA+CGG + Chr2:59859643-59859662 MsG0280009879.01.T01:CDS 25.0%
! TGAAATTTGGAAGAGTTAAT+GGG + Chr2:59860519-59860538 MsG0280009879.01.T01:CDS 25.0%
!! GAAATTTGATTAGCTAAGTT+AGG - Chr2:59860348-59860367 None:intergenic 25.0%
!! TCATTATCTCAAATTTTCAC+AGG - Chr2:59860268-59860287 None:intergenic 25.0%
!!! AAAACTCTAATTTTCAAGGT+TGG + Chr2:59860122-59860141 MsG0280009879.01.T01:intron 25.0%
!!! CGAAGATTTTTTATTTTCTG+TGG - Chr2:59859091-59859110 None:intergenic 25.0%
AAAAATCTTCGTATCCATTC+AGG + Chr2:59859100-59859119 MsG0280009879.01.T01:CDS 30.0%
AAAATCGACAAGTTCTCAAT+TGG - Chr2:59859781-59859800 None:intergenic 30.0%
AAATTTCACAACCTTAAGTG+TGG - Chr2:59860507-59860526 None:intergenic 30.0%
AACTATAGTGAAACATAGAC+TGG + Chr2:59860228-59860247 MsG0280009879.01.T01:intron 30.0%
AAGAGATCCATGTATTTAGA+AGG - Chr2:59859057-59859076 None:intergenic 30.0%
AATGTGACTTATAAGCGATT+CGG - Chr2:59858804-59858823 None:intergenic 30.0%
ACACTTAAGGTTGTGAAATT+TGG + Chr2:59860506-59860525 MsG0280009879.01.T01:CDS 30.0%
AGAGATCCATGTATTTAGAA+GGG - Chr2:59859056-59859075 None:intergenic 30.0%
ATGATTGTCTGTTCTACAAA+AGG + Chr2:59858918-59858937 MsG0280009879.01.T01:CDS 30.0%
CAAGTGTGTTATCTAAGAAA+TGG + Chr2:59858858-59858877 MsG0280009879.01.T01:CDS 30.0%
CCAAAATAAACATCCTTGAT+GGG - Chr2:59859226-59859245 None:intergenic 30.0%
CTAATATAATGCTAAGTAGG+TGG + Chr2:59859560-59859579 MsG0280009879.01.T01:CDS 30.0%
CTTAAATTCTTCCATGACTT+CGG - Chr2:59860642-59860661 None:intergenic 30.0%
GGGAATATTCAAATTCGATA+AGG + Chr2:59860442-59860461 MsG0280009879.01.T01:intron 30.0%
GTGAAATTTGGAAGAGTTAA+TGG + Chr2:59860518-59860537 MsG0280009879.01.T01:CDS 30.0%
GTGCTAATATAATGCTAAGT+AGG + Chr2:59859557-59859576 MsG0280009879.01.T01:CDS 30.0%
TAAGTTTCGTTATGACATTC+AGG + Chr2:59859983-59860002 MsG0280009879.01.T01:intron 30.0%
TCCAAAATAAACATCCTTGA+TGG - Chr2:59859227-59859246 None:intergenic 30.0%
TCTGTTCTACAAAAGGAAAT+CGG + Chr2:59858925-59858944 MsG0280009879.01.T01:CDS 30.0%
! ATTAAGTGTGAAGTTTTGCT+GGG + Chr2:59860074-59860093 MsG0280009879.01.T01:CDS 30.0%
! CTCCAATTCTTCTAAAAAGA+TGG - Chr2:59859173-59859192 None:intergenic 30.0%
! GAAAATTCGATTTGACAACT+CGG - Chr2:59859448-59859467 None:intergenic 30.0%
!! CTCCATCTTTTTAGAAGAAT+TGG + Chr2:59859168-59859187 MsG0280009879.01.T01:CDS 30.0%
!!! ATGTGAATGTTTTCAAGTAG+AGG - Chr2:59859394-59859413 None:intergenic 30.0%
!!! GCGTTTGGCTAAATTTTTTA+TGG + Chr2:59860556-59860575 MsG0280009879.01.T01:CDS 30.0%
!!! GTTTTCACATAGCTAGTTTT+AGG + Chr2:59859924-59859943 MsG0280009879.01.T01:intron 30.0%
AAAGCTCAGCATTGCAAATT+CGG - Chr2:59860039-59860058 None:intergenic 35.0%
AGTTTGAATCAGACTTGCAA+AGG - Chr2:59860401-59860420 None:intergenic 35.0%
ATGTGACTTATAAGCGATTC+GGG - Chr2:59858803-59858822 None:intergenic 35.0%
CAAGCATATTTAGCTATCGA+CGG - Chr2:59859538-59859557 None:intergenic 35.0%
CGAAGTCATGGAAGAATTTA+AGG + Chr2:59860640-59860659 MsG0280009879.01.T01:CDS 35.0%
CGATATGACAATCAAACATC+TGG - Chr2:59859198-59859217 None:intergenic 35.0%
CTGTTCTACAAAAGGAAATC+GGG + Chr2:59858926-59858945 MsG0280009879.01.T01:CDS 35.0%
CTTCAGAAACTTTGTCAACA+AGG + Chr2:59858961-59858980 MsG0280009879.01.T01:CDS 35.0%
TATCCATTCAGGATACGAAT+GGG + Chr2:59859111-59859130 MsG0280009879.01.T01:CDS 35.0%
TTGTGACAAGAAACTGTGAT+TGG + Chr2:59859338-59859357 MsG0280009879.01.T01:CDS 35.0%
TTGTTTCACATCCACACTTA+AGG + Chr2:59860493-59860512 MsG0280009879.01.T01:CDS 35.0%
TTTGCCTTATGCTTCTTATG+AGG - Chr2:59858752-59858771 None:intergenic 35.0%
! AAAGCCTCATAAGAAGCATA+AGG + Chr2:59858745-59858764 MsG0280009879.01.T01:CDS 35.0%
! ACAAGAAACTGTGATTGGTT+AGG + Chr2:59859343-59859362 MsG0280009879.01.T01:CDS 35.0%
! ATTTGCAATGCTGAGCTTTT+TGG + Chr2:59860040-59860059 MsG0280009879.01.T01:CDS 35.0%
! CAAGTGCTCGTCTAAATTTT+TGG + Chr2:59859896-59859915 MsG0280009879.01.T01:intron 35.0%
! CCCATCAAGGATGTTTATTT+TGG + Chr2:59859223-59859242 MsG0280009879.01.T01:CDS 35.0%
! GATTAAGTGTGAAGTTTTGC+TGG + Chr2:59860073-59860092 MsG0280009879.01.T01:CDS 35.0%
AAAATGGTATGGTGCTTGAG+AGG + Chr2:59860579-59860598 MsG0280009879.01.T01:CDS 40.0%
AACTCGGTTCATGAGATGAT+GGG - Chr2:59859432-59859451 None:intergenic 40.0%
AAGCTCAGCATTGCAAATTC+GGG - Chr2:59860038-59860057 None:intergenic 40.0%
ACAATCATCTAAGTCCAGCT+TGG - Chr2:59858906-59858925 None:intergenic 40.0%
AGTGTGGATGTGAAACAATC+TGG - Chr2:59860491-59860510 None:intergenic 40.0%
GTATCCATTCAGGATACGAA+TGG + Chr2:59859110-59859129 MsG0280009879.01.T01:CDS 40.0%
GTATGAGCATGAATTGCGTT+TGG + Chr2:59860541-59860560 MsG0280009879.01.T01:CDS 40.0%
TATAATGCTAAGTAGGTGGC+AGG + Chr2:59859564-59859583 MsG0280009879.01.T01:CDS 40.0%
TCATATCGAAGTTCCCATCA+AGG + Chr2:59859210-59859229 MsG0280009879.01.T01:CDS 40.0%
TTCTACAAAAGGAAATCGGG+TGG + Chr2:59858929-59858948 MsG0280009879.01.T01:CDS 40.0%
TTCTTGTCACAAACGTTTCG+AGG - Chr2:59859330-59859349 None:intergenic 40.0%
TTGGAAGCCTTAAACATGTC+AGG + Chr2:59859242-59859261 MsG0280009879.01.T01:CDS 40.0%
TTTACCAATTGCTCCTCATC+TGG + Chr2:59859280-59859299 MsG0280009879.01.T01:CDS 40.0%
! ACTTTCCACGCTTGAACTTT+TGG - Chr2:59858999-59859018 None:intergenic 40.0%
! ATCTGGTGTTAGAACACGAA+AGG + Chr2:59858721-59858740 MsG0280009879.01.T01:CDS 40.0%
! ATGCTGAGCTTTTTGGATCT+TGG + Chr2:59860047-59860066 MsG0280009879.01.T01:CDS 40.0%
! TATCTCATTTAACGGGTCTG+AGG + Chr2:59859651-59859670 MsG0280009879.01.T01:CDS 40.0%
! TGTGATTGGTTAGGTGCAAA+GGG + Chr2:59859352-59859371 MsG0280009879.01.T01:CDS 40.0%
! TTTCGAGGACTGGTAAAGTA+AGG - Chr2:59859315-59859334 None:intergenic 40.0%
! TTTTGCTGGGCTTACTTCAA+AGG + Chr2:59860087-59860106 MsG0280009879.01.T01:CDS 40.0%
AACGCAGCCTGACATGTTTA+AGG - Chr2:59859252-59859271 None:intergenic 45.0%
ATAGCCAGATGAGGAGCAAT+TGG - Chr2:59859287-59859306 None:intergenic 45.0%
CAACTCGGTTCATGAGATGA+TGG - Chr2:59859433-59859452 None:intergenic 45.0%
CGACGGATCTGACAGAATTA+CGG - Chr2:59859521-59859540 None:intergenic 45.0%
CTAAGAAATGGATGTACCGC+TGG + Chr2:59858870-59858889 MsG0280009879.01.T01:CDS 45.0%
GACGGATCTGACAGAATTAC+GGG - Chr2:59859520-59859539 None:intergenic 45.0%
GGTTCTCACACAACCAAATG+TGG + Chr2:59860004-59860023 MsG0280009879.01.T01:intron 45.0%
TCCGTTGCTAGTCAAGAACT+GGG + Chr2:59860611-59860630 MsG0280009879.01.T01:CDS 45.0%
TCTGACCAAAAGTTCAAGCG+TGG + Chr2:59858991-59859010 MsG0280009879.01.T01:CDS 45.0%
TTAAACATGTCAGGCTGCGT+TGG + Chr2:59859251-59859270 MsG0280009879.01.T01:CDS 45.0%
TTGAGATGCAAGAGCTGAGA+AGG - Chr2:59859137-59859156 None:intergenic 45.0%
! ATCTAAGTCCAGCTTGGTGA+TGG - Chr2:59858900-59858919 None:intergenic 45.0%
! CTGTGATTGGTTAGGTGCAA+AGG + Chr2:59859351-59859370 MsG0280009879.01.T01:CDS 45.0%
! GACTTATAAGCGATTCGGGT+AGG - Chr2:59858799-59858818 None:intergenic 45.0%
! GAGTTTGGTTCAGCTTCATC+TGG + Chr2:59858704-59858723 MsG0280009879.01.T01:CDS 45.0%
! TACGCGCTGCATCTTTTGTT+GGG - Chr2:59858838-59858857 None:intergenic 45.0%
!! GTTCATGAGATGATGGGCTA+CGG - Chr2:59859426-59859445 None:intergenic 45.0%
AAAGCACGTAGTCCTGCTTC+TGG - Chr2:59859598-59859617 None:intergenic 50.0%
AAGGCTCAGATAGCCAGATG+AGG - Chr2:59859296-59859315 None:intergenic 50.0%
ACTGGGCAAATCCGAAGTCA+TGG + Chr2:59860628-59860647 MsG0280009879.01.T01:CDS 50.0%
AGGCCCATTCGTATCCTGAA+TGG - Chr2:59859117-59859136 None:intergenic 50.0%
CTCCGTTGCTAGTCAAGAAC+TGG + Chr2:59860610-59860629 MsG0280009879.01.T01:CDS 50.0%
GCCCAGTTCTTGACTAGCAA+CGG - Chr2:59860615-59860634 None:intergenic 50.0%
GTCACAAACGTTTCGAGGAC+TGG - Chr2:59859325-59859344 None:intergenic 50.0%
TCGGGTAGAACAGCCACATT+TGG - Chr2:59860020-59860039 None:intergenic 50.0%
! AAGCGATTCGGGTAGGTTGT+TGG - Chr2:59858792-59858811 None:intergenic 50.0%
! GTACGCGCTGCATCTTTTGT+TGG - Chr2:59858839-59858858 None:intergenic 50.0%
CAGGATGCAACTCCAGAAGC+AGG + Chr2:59859583-59859602 MsG0280009879.01.T01:CDS 55.0%
CTGGATCTCCATCACCAAGC+TGG + Chr2:59858889-59858908 MsG0280009879.01.T01:CDS 55.0%
!! GCTTGGTGATGGAGATCCAG+CGG - Chr2:59858889-59858908 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 59858701 59860724 59858701 ID=MsG0280009879.01;Name=MsG0280009879.01
Chr2 mRNA 59858701 59860724 59858701 ID=MsG0280009879.01.T01;Parent=MsG0280009879.01;Name=MsG0280009879.01.T01;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|462
Chr2 exon 59858701 59859672 59858701 ID=MsG0280009879.01.T01:exon:22654;Parent=MsG0280009879.01.T01
Chr2 exon 59860005 59860139 59860005 ID=MsG0280009879.01.T01:exon:22655;Parent=MsG0280009879.01.T01
Chr2 exon 59860443 59860724 59860443 ID=MsG0280009879.01.T01:exon:22656;Parent=MsG0280009879.01.T01
Chr2 CDS 59858701 59859672 59858701 ID=MsG0280009879.01.T01:cds;Parent=MsG0280009879.01.T01
Chr2 CDS 59860005 59860139 59860005 ID=MsG0280009879.01.T01:cds;Parent=MsG0280009879.01.T01
Chr2 CDS 59860443 59860724 59860443 ID=MsG0280009879.01.T01:cds;Parent=MsG0280009879.01.T01
Gene Sequence

>MsG0280009879.01.T01

ATGGAGTTTGGTTCAGCTTCATCTGGTGTTAGAACACGAAAGGAAAAGCCTCATAAGAAGCATAAGGCAAACGAAGTTGAAGATTTAACCAACAACCTACCCGAATCGCTTATAAGTCACATTCTCTCATTTCTCCCAACAAAAGATGCAGCGCGTACAAGTGTGTTATCTAAGAAATGGATGTACCGCTGGATCTCCATCACCAAGCTGGACTTAGATGATTGTCTGTTCTACAAAAGGAAATCGGGTGGAATTCAACACTTCAGAAACTTTGTCAACAAGGCAGTTCTTCTGACCAAAAGTTCAAGCGTGGAAAGTTTTTCTCTTGCTATGAATAACAAGTGTGATATATCCCTTCTAAATACATGGATCTCTTGTGTCTTGATCCCACAGAAAATAAAAAATCTTCGTATCCATTCAGGATACGAATGGGCCTTCTCAGCTCTTGCATCTCAATCTCTTTTCAACTCCATCTTTTTAGAAGAATTGGAGCTCCAGATGTTTGATTGTCATATCGAAGTTCCCATCAAGGATGTTTATTTTGGAAGCCTTAAACATGTCAGGCTGCGTTGGATAGAGTTTACCAATTGCTCCTCATCTGGCTATCTGAGCCTTACTTTACCAGTCCTCGAAACGTTTGTGACAAGAAACTGTGATTGGTTAGGTGCAAAGGGTGTCATTGTAAAAGCACCTCTACTTGAAAACATTCACATCGTGCAAGACCGTAGCCCATCATCTCATGAACCGAGTTGTCAAATCGAATTTTCTGATTGTCATCTGAAAGAATTTACTTATGATGGTTATGCTATATCACAACCCGTAATTCTGTCAGATCCGTCGATAGCTAAATATGCTTGTGCTAATATAATGCTAAGTAGGTGGCAGGATGCAACTCCAGAAGCAGGACTACGTGCTTTTGCGCTTCTCAATCAGTTCAGTCAAGCAAAATCTATCTCATTTAACGGGTCTGAGGTTCTCACACAACCAAATGTGGCTGTTCTACCCGAATTTGCAATGCTGAGCTTTTTGGATCTTGGCTTGATTAAGTGTGAAGTTTTGCTGGGCTTACTTCAAAGGTCACCGATTCTTAAAACTCTAATTTTCAAGGGAATATTCAAATTCGATAAGGAGCTTCTGAATTCTGCTGTTGTGCCAGATTGTTTCACATCCACACTTAAGGTTGTGAAATTTGGAAGAGTTAATGGGTATGAGCATGAATTGCGTTTGGCTAAATTTTTTATGGAAAATGGTATGGTGCTTGAGAGGATGAGTTTCTCCGTTGCTAGTCAAGAACTGGGCAAATCCGAAGTCATGGAAGAATTTAAGGAGAATCTATTCTCATTTAAGAAAGGTTTCTCTTTTGCTATTGTTGAATTTTCATATGATTAG

Protein sequence

>MsG0280009879.01.T01

MEFGSASSGVRTRKEKPHKKHKANEVEDLTNNLPESLISHILSFLPTKDAARTSVLSKKWMYRWISITKLDLDDCLFYKRKSGGIQHFRNFVNKAVLLTKSSSVESFSLAMNNKCDISLLNTWISCVLIPQKIKNLRIHSGYEWAFSALASQSLFNSIFLEELELQMFDCHIEVPIKDVYFGSLKHVRLRWIEFTNCSSSGYLSLTLPVLETFVTRNCDWLGAKGVIVKAPLLENIHIVQDRSPSSHEPSCQIEFSDCHLKEFTYDGYAISQPVILSDPSIAKYACANIMLSRWQDATPEAGLRAFALLNQFSQAKSISFNGSEVLTQPNVAVLPEFAMLSFLDLGLIKCEVLLGLLQRSPILKTLIFKGIFKFDKELLNSAVVPDCFTSTLKVVKFGRVNGYEHELRLAKFFMENGMVLERMSFSVASQELGKSEVMEEFKENLFSFKKGFSFAIVEFSYD*