AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021723.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021723.01.T01 MTR_4g080787 56.115 278 87 4 97 371 246 491 6.49e-89 277
MsG0480021723.01.T01 MTR_4g080787 65.854 82 24 3 1 80 1 80 4.48e-23 100
MsG0480021723.01.T01 MTR_4g080807 51.020 294 125 6 97 377 111 398 1.51e-81 255
MsG0480021723.01.T01 MTR_4g080773 62.745 204 74 2 103 304 252 455 8.62e-75 240
MsG0480021723.01.T01 MTR_4g080773 65.854 82 24 3 1 80 1 80 5.92e-23 100
MsG0480021723.01.T01 MTR_4g080773 62.745 204 74 2 103 304 252 455 9.49e-75 240
MsG0480021723.01.T01 MTR_4g080773 65.854 82 24 3 1 80 1 80 6.45e-23 100
MsG0480021723.01.T01 MTR_3g048290 63.084 214 73 3 97 304 240 453 7.04e-74 238
MsG0480021723.01.T01 MTR_3g048290 66.279 86 25 2 1 82 1 86 1.27e-27 114
MsG0480021723.01.T01 MTR_5g039950 40.449 267 146 6 57 316 160 420 1.27e-47 167
MsG0480021723.01.T01 MTR_5g039950 51.471 68 31 1 1 66 1 68 2.18e-14 74.7
MsG0480021723.01.T01 MTR_4g080590 45.320 203 106 3 107 306 242 442 2.11e-37 140
MsG0480021723.01.T01 MTR_4g080590 54.321 81 32 2 1 79 1 78 6.85e-18 85.1
MsG0480021723.01.T01 MTR_7g023330 41.284 218 115 7 96 306 175 386 1.84e-36 137
MsG0480021723.01.T01 MTR_7g023330 57.333 75 27 2 6 75 3 77 8.52e-17 81.6
MsG0480021723.01.T01 MTR_4g130200 43.085 188 105 2 117 302 191 378 8.15e-34 129
MsG0480021723.01.T01 MTR_4g130200 60.317 63 20 2 1 61 1 60 2.74e-14 73.9
MsG0480021723.01.T01 MTR_7g039630 43.827 162 82 4 78 230 182 343 3.09e-29 116
MsG0480021723.01.T01 MTR_4g080813 62.366 93 29 3 5 92 1 92 6.09e-28 105
MsG0480021723.01.T01 MTR_7g023310 40.654 214 117 6 99 307 240 448 1.15e-26 110
MsG0480021723.01.T01 MTR_7g023310 48.148 81 34 4 1 73 1 81 2.69e-13 71.2
MsG0480021723.01.T01 MTR_5g039970 70.312 64 17 1 5 66 1 64 1.95e-23 100
MsG0480021723.01.T01 MTR_4g080590 48.387 124 60 2 107 228 242 363 3.21e-19 88.6
MsG0480021723.01.T01 MTR_4g080590 54.321 81 32 2 1 79 1 78 3.42e-18 85.5
MsG0480021723.01.T01 MTR_2g094750 47.287 129 54 5 107 226 337 460 3.29e-18 86.3
MsG0480021723.01.T01 MTR_2g094750 57.895 57 23 1 23 79 92 147 1.65e-12 68.9
MsG0480021723.01.T01 MTR_4g081030 43.165 139 73 3 93 225 217 355 1.43e-16 80.9
MsG0480021723.01.T01 MTR_4g081030 53.226 62 29 0 5 66 1 62 2.19e-12 68.2
MsG0480021723.01.T01 MTR_2g007550 26.074 326 184 13 18 296 11 326 1.50e-14 74.3
MsG0480021723.01.T01 MTR_2g102420 51.429 70 34 0 157 226 18 87 6.63e-13 64.3
MsG0480021723.01.T01 MTR_2g082800 32.759 116 63 1 9 124 15 115 1.35e-12 68.9
MsG0480021723.01.T01 MTR_7g033470 47.619 63 31 1 18 80 11 71 7.03e-12 63.2
MsG0480021723.01.T01 MTR_2g082860 42.029 69 40 0 10 78 16 84 1.03e-11 62.0
MsG0480021723.01.T01 MTR_4g024770 45.161 62 34 0 4 65 7 68 4.35e-11 58.9
MsG0480021723.01.T01 MTR_8g445780 46.479 71 38 0 21 91 13 83 8.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCATATGGTTCACAAAT+AGG 0.254992 4:+63537441 None:intergenic
CGCCCGCCACATCATGTCTT+TGG 0.276854 4:+63538248 None:intergenic
TTTCCAGTTTAGGAGTCTTT+AGG 0.278514 4:+63537065 None:intergenic
TAGATTAGTTCTTTCAGATT+TGG 0.290038 4:-63535589 MsG0480021723.01.T01:CDS
CCTCCACTTGTTTGCTAATA+CGG 0.298934 4:+63538147 None:intergenic
ACTACAGAGGTCAGGTTAAC+AGG 0.305488 4:+63537492 None:intergenic
CAAACAAGTGGAGGCACTTA+TGG 0.310885 4:-63538138 MsG0480021723.01.T01:CDS
GGAAGTTCTTACAGCATCTT+TGG 0.316021 4:+63538168 None:intergenic
CTTTAGGATCGTGTGGAGTA+TGG 0.325919 4:-63536162 MsG0480021723.01.T01:intron
ATCTGAAGACTTTCCAGTTT+AGG 0.339949 4:+63537055 None:intergenic
TCTCCTAAAGACTCCTAAAC+TGG 0.365638 4:-63537068 MsG0480021723.01.T01:CDS
TTTCACTGATGAAGTACTAA+TGG 0.381867 4:-63537095 MsG0480021723.01.T01:CDS
TGGTTGCTGCTTTAAGATAC+AGG 0.385333 4:-63535569 MsG0480021723.01.T01:intron
AGCATCTTTGGTAGGGAGTA+AGG 0.386627 4:+63538180 None:intergenic
TGATTAGGTACTTGACTACT+TGG 0.419041 4:-63536925 MsG0480021723.01.T01:intron
CAGCATATGGTTCACAAATA+GGG 0.421631 4:+63537442 None:intergenic
GATTTGAAACAGCAAGGCAC+TGG 0.429593 4:+63536879 None:intergenic
AAATCTGAAAGAACTAATCT+AGG 0.433604 4:+63535591 None:intergenic
TTAACAGGGATAATATCTAT+TGG 0.443705 4:+63537507 None:intergenic
CTTCCTGCTGCAGGTAAGAA+TGG 0.444612 4:-63535154 MsG0480021723.01.T01:CDS
CTGGAAAGTCTTCAGATACC+TGG 0.449246 4:-63537049 MsG0480021723.01.T01:CDS
TGTGTCAATTTGTGAAATCT+AGG 0.473639 4:+63537145 None:intergenic
GTTCTTACAGCATCTTTGGT+AGG 0.480673 4:+63538172 None:intergenic
TAGAGAAGGTGGATGATGTT+CGG 0.488207 4:-63536725 MsG0480021723.01.T01:CDS
CACATCTTTATGTGTTTCGT+GGG 0.490448 4:-63537126 MsG0480021723.01.T01:CDS
TTTCAGCTATTGAGTGGACT+TGG 0.495648 4:-63537408 MsG0480021723.01.T01:CDS
TTCTTACAGCATCTTTGGTA+GGG 0.496479 4:+63538173 None:intergenic
AAAATCAAAGGCAGATAAGT+AGG 0.500764 4:+63538114 None:intergenic
TCTGCGGTGCTTCCTGCTGC+AGG 0.507012 4:-63535163 MsG0480021723.01.T01:CDS
TTGAACAGTTTCAAAATCAA+AGG 0.508132 4:+63538102 None:intergenic
TGGATGATGTTCGGAACCAT+TGG 0.515997 4:-63536716 MsG0480021723.01.T01:CDS
ACACATCTTTATGTGTTTCG+TGG 0.519038 4:-63537127 MsG0480021723.01.T01:CDS
AATACACACTGAGCAGCATA+TGG 0.524125 4:+63537429 None:intergenic
ATCTCGCAACTAGATCTAAG+AGG 0.526833 4:+63538037 None:intergenic
ATGTATCAACTACAGAGGTC+AGG 0.533741 4:+63537484 None:intergenic
TGTCCATTCTTACCTGCAGC+AGG 0.534614 4:+63535151 None:intergenic
ATATGAAGAAGAACTTCCTC+AGG 0.535641 4:+63538208 None:intergenic
GATGGAGAGCATCCTTTGTA+CGG 0.548823 4:+63537173 None:intergenic
TGTGAAATCTAGGAAGGAGA+TGG 0.559010 4:+63537155 None:intergenic
ATCCAAAGACATGATGTGGC+GGG 0.561807 4:-63538250 MsG0480021723.01.T01:CDS
TGGAAAGTCTTCAGATACCT+GGG 0.564430 4:-63537048 MsG0480021723.01.T01:CDS
CTACAGAGGTCAGGTTAACA+GGG 0.566349 4:+63537493 None:intergenic
GGTAAGAATGGACATGCTCT+CGG 0.568244 4:-63535142 MsG0480021723.01.T01:CDS
AAAATAAAACGTACCACCCC+AGG 0.568996 4:+63537031 None:intergenic
TTTATCAGATATAGAGAAGG+TGG 0.573088 4:-63536736 MsG0480021723.01.T01:CDS
TGTGTATTTCAGCTATTGAG+TGG 0.574330 4:-63537414 MsG0480021723.01.T01:CDS
TCAATTTGTGAAATCTAGGA+AGG 0.578890 4:+63537149 None:intergenic
TAAAATCCAAAGACATGATG+TGG 0.581453 4:-63538254 MsG0480021723.01.T01:CDS
ATTTGAAACAGCAAGGCACT+GGG 0.586718 4:+63536880 None:intergenic
GTTGGGTCTTTAGGATCGTG+TGG 0.587703 4:-63536169 MsG0480021723.01.T01:intron
TCTGGGCCTACATCTTCCAA+TGG 0.595407 4:+63536700 None:intergenic
ACTATATAATAATACTCTTG+AGG 0.601018 4:-63537367 MsG0480021723.01.T01:intron
AGAGAAGATTTGAAACAGCA+AGG 0.601972 4:+63536873 None:intergenic
CCGTATTAGCAAACAAGTGG+AGG 0.611955 4:-63538147 MsG0480021723.01.T01:CDS
CTTCCGTATTAGCAAACAAG+TGG 0.621723 4:-63538150 MsG0480021723.01.T01:CDS
CTAGTGTCTTTACCGTACAA+AGG 0.625332 4:-63537185 MsG0480021723.01.T01:intron
CGTGTGGAGTATGGACATAG+TGG 0.625572 4:-63536153 MsG0480021723.01.T01:CDS
CAGGCGTAGTAGATCATGGT+CGG 0.633313 4:-63538301 None:intergenic
AATCCAAAGACATGATGTGG+CGG 0.634648 4:-63538251 MsG0480021723.01.T01:CDS
ACATTTATCAGATATAGAGA+AGG 0.661241 4:-63536739 MsG0480021723.01.T01:CDS
GGAGTATGGACATAGTGGAG+AGG 0.673340 4:-63536148 MsG0480021723.01.T01:CDS
AATAGATGTATCAACTACAG+AGG 0.675392 4:+63537479 None:intergenic
CATGATTAGCGATTTACCTG+AGG 0.678654 4:-63538224 MsG0480021723.01.T01:CDS
AAGTCTTCAGATACCTGGGG+TGG 0.698855 4:-63537044 MsG0480021723.01.T01:intron
GGAAAGTCTTCAGATACCTG+GGG 0.702227 4:-63537047 MsG0480021723.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGATTTATAAAATGTT+TGG - Chr4:63537233-63537252 MsG0480021723.01.T01:intron 10.0%
!! TATTATTATGATAAATTTGA+AGG + Chr4:63537754-63537773 None:intergenic 10.0%
!!! TTATGCTTTTTAAATTTTTA+TGG - Chr4:63536581-63536600 MsG0480021723.01.T01:intron 10.0%
!! AAATAAAACAAAGAAAGAAA+TGG + Chr4:63536796-63536815 None:intergenic 15.0%
!! TAACTAATAAATTCATGTAA+AGG - Chr4:63537430-63537449 MsG0480021723.01.T01:CDS 15.0%
!! TTGATATAAAACATACATTA+AGG + Chr4:63537638-63537657 None:intergenic 15.0%
!!! AATTTTACACTTTTCATAAT+AGG - Chr4:63538152-63538171 MsG0480021723.01.T01:CDS 15.0%
!!! ACTGTATCAATTATTTTTAT+TGG - Chr4:63536936-63536955 MsG0480021723.01.T01:intron 15.0%
!!! TTCTTTCTTTGTTTTATTTT+TGG - Chr4:63536797-63536816 MsG0480021723.01.T01:CDS 15.0%
!! AAAGAAAAATCAAAAGAACA+CGG - Chr4:63535356-63535375 MsG0480021723.01.T01:intron 20.0%
!! AACATATTTAAACCATAGTT+AGG - Chr4:63537173-63537192 MsG0480021723.01.T01:CDS 20.0%
!! AACTATGGTTTAAATATGTT+GGG + Chr4:63537173-63537192 None:intergenic 20.0%
!! ACTATATAATAATACTCTTG+AGG - Chr4:63536057-63536076 MsG0480021723.01.T01:intron 20.0%
!! ATCATTTAATCGCATATATT+AGG + Chr4:63537221-63537240 None:intergenic 20.0%
!! GATTTATAAAATGTTTGGTT+GGG - Chr4:63537238-63537257 MsG0480021723.01.T01:intron 20.0%
!! TAACTATGGTTTAAATATGT+TGG + Chr4:63537174-63537193 None:intergenic 20.0%
!! TGATTTATAAAATGTTTGGT+TGG - Chr4:63537237-63537256 MsG0480021723.01.T01:intron 20.0%
!!! AAAATGTACTAAGTCTTATT+GGG - Chr4:63537545-63537564 MsG0480021723.01.T01:CDS 20.0%
!!! AAGTTCTAGATTCTTTTTAA+CGG + Chr4:63537058-63537077 None:intergenic 20.0%
!!! ATTTTTTTAGTATGTGAAGT+AGG - Chr4:63537779-63537798 MsG0480021723.01.T01:intron 20.0%
!!! TTTCATCTTACTATGAATTT+TGG - Chr4:63537102-63537121 MsG0480021723.01.T01:CDS 20.0%
! AAATCTGAAAGAACTAATCT+AGG + Chr4:63537836-63537855 None:intergenic 25.0%
! AACATTGTCATTAGGTATTA+TGG + Chr4:63536143-63536162 None:intergenic 25.0%
! AAGAAAAATCAAAAGAACAC+GGG - Chr4:63535357-63535376 MsG0480021723.01.T01:intron 25.0%
! ACATTTATCAGATATAGAGA+AGG - Chr4:63536685-63536704 MsG0480021723.01.T01:intron 25.0%
! ATAATACCTAATGACAATGT+TGG - Chr4:63536142-63536161 MsG0480021723.01.T01:CDS 25.0%
! ATAATAGGATAATTTCTCAC+TGG - Chr4:63538167-63538186 MsG0480021723.01.T01:CDS 25.0%
! ATAATTGATACAGTTCACAA+AGG + Chr4:63536930-63536949 None:intergenic 25.0%
! ATGTTTAGTGATTCTTGATT+AGG - Chr4:63536484-63536503 MsG0480021723.01.T01:intron 25.0%
! CATTCCATAATATAAATGTG+TGG - Chr4:63536847-63536866 MsG0480021723.01.T01:CDS 25.0%
! TAATTGATACAGTTCACAAA+GGG + Chr4:63536929-63536948 None:intergenic 25.0%
! TCAACCACACATTTATATTA+TGG + Chr4:63536854-63536873 None:intergenic 25.0%
! TTAAAAAATGCCCCATATTT+GGG - Chr4:63536638-63536657 MsG0480021723.01.T01:intron 25.0%
! TTAACAGGGATAATATCTAT+TGG + Chr4:63535920-63535939 None:intergenic 25.0%
! TTGAACAGTTTCAAAATCAA+AGG + Chr4:63535325-63535344 None:intergenic 25.0%
!! CAAAATGTACTAAGTCTTAT+TGG - Chr4:63537544-63537563 MsG0480021723.01.T01:CDS 25.0%
!! CACTTTTAAATGTTTGAACA+CGG + Chr4:63535444-63535463 None:intergenic 25.0%
!! TAGATTAGTTCTTTCAGATT+TGG - Chr4:63537835-63537854 MsG0480021723.01.T01:intron 25.0%
!! TCTTTGGATTTTATGCATAT+TGG + Chr4:63535163-63535182 None:intergenic 25.0%
!!! ACATTTAAAAGTGTTGTTGA+TGG - Chr4:63535451-63535470 MsG0480021723.01.T01:intron 25.0%
!!! ACTTTTCTTTTGATTTGACT+TGG - Chr4:63537921-63537940 MsG0480021723.01.T01:intron 25.0%
!!! CTTTTCTTTTGATTTGACTT+GGG - Chr4:63537922-63537941 MsG0480021723.01.T01:intron 25.0%
AAAATCAAAGGCAGATAAGT+AGG + Chr4:63535313-63535332 None:intergenic 30.0%
AATAGATGTATCAACTACAG+AGG + Chr4:63535948-63535967 None:intergenic 30.0%
AATGGAAACAAAATCACGTT+AGG + Chr4:63536218-63536237 None:intergenic 30.0%
ACTGTAATAGTCAAAATCGA+TGG + Chr4:63535822-63535841 None:intergenic 30.0%
CAACAATGAAAAGCAAAAGA+CGG + Chr4:63537968-63537987 None:intergenic 30.0%
CTGGTAATTGTCATATTTCA+AGG - Chr4:63536427-63536446 MsG0480021723.01.T01:intron 30.0%
CTGTTTCAATTTCCACATTA+AGG - Chr4:63535790-63535809 MsG0480021723.01.T01:intron 30.0%
CTTAAAAAATGCCCCATATT+TGG - Chr4:63536637-63536656 MsG0480021723.01.T01:intron 30.0%
TAAAAAATGCCCCATATTTG+GGG - Chr4:63536639-63536658 MsG0480021723.01.T01:intron 30.0%
TAAAATCCAAAGACATGATG+TGG - Chr4:63535170-63535189 MsG0480021723.01.T01:CDS 30.0%
TAGATGTTGGAACACTTAAA+CGG - Chr4:63537345-63537364 MsG0480021723.01.T01:intron 30.0%
TCAATTTGTGAAATCTAGGA+AGG + Chr4:63536278-63536297 None:intergenic 30.0%
TCGAAAGATGAGAAACTATT+TGG + Chr4:63535570-63535589 None:intergenic 30.0%
TGACATACCAAAACATAACA+CGG - Chr4:63537025-63537044 MsG0480021723.01.T01:intron 30.0%
TGGTAACACAAACTTATCAT+TGG + Chr4:63535550-63535569 None:intergenic 30.0%
TGTGTCAATTTGTGAAATCT+AGG + Chr4:63536282-63536301 None:intergenic 30.0%
TTAAAGCCAACATTGTCATT+AGG + Chr4:63536151-63536170 None:intergenic 30.0%
TTCACTCTACATATTCCTAA+CGG - Chr4:63535621-63535640 MsG0480021723.01.T01:CDS 30.0%
TTTATCAGATATAGAGAAGG+TGG - Chr4:63536688-63536707 MsG0480021723.01.T01:intron 30.0%
TTTCACAACAGAAGCTATTA+AGG + Chr4:63535491-63535510 None:intergenic 30.0%
! TTTCACTGATGAAGTACTAA+TGG - Chr4:63536329-63536348 MsG0480021723.01.T01:intron 30.0%
!! TCTTTTGCTTTTCATTGTTG+CGG - Chr4:63537968-63537987 MsG0480021723.01.T01:intron 30.0%
AAAAAATGCCCCATATTTGG+GGG - Chr4:63536640-63536659 MsG0480021723.01.T01:intron 35.0%
AAATGTTTGGTTGGGTCTTT+AGG - Chr4:63537246-63537265 MsG0480021723.01.T01:intron 35.0%
AATATGACAATTACCAGCAC+TGG + Chr4:63536424-63536443 None:intergenic 35.0%
ACACATCTTTATGTGTTTCG+TGG - Chr4:63536297-63536316 MsG0480021723.01.T01:intron 35.0%
AGATGTGTGTGTGATTATAG+AGG - Chr4:63538010-63538029 MsG0480021723.01.T01:intron 35.0%
ATATGAAGAAGAACTTCCTC+AGG + Chr4:63535219-63535238 None:intergenic 35.0%
ATCTGAAGACTTTCCAGTTT+AGG + Chr4:63536372-63536391 None:intergenic 35.0%
ATGGTCAACTCTTGTAAAAC+AGG + Chr4:63535735-63535754 None:intergenic 35.0%
ATGTGTGTGTGATTATAGAG+GGG - Chr4:63538012-63538031 MsG0480021723.01.T01:intron 35.0%
ATTACTGCACAAATCTAGTC+GGG - Chr4:63535408-63535427 MsG0480021723.01.T01:intron 35.0%
CAACAACTCTAACACTTAGA+CGG + Chr4:63536989-63537008 None:intergenic 35.0%
CAAGATCTTGAACTTTCACT+AGG - Chr4:63535520-63535539 MsG0480021723.01.T01:intron 35.0%
CACATCTTTATGTGTTTCGT+GGG - Chr4:63536298-63536317 MsG0480021723.01.T01:intron 35.0%
CACTCAATCATACCTAACTA+TGG + Chr4:63537188-63537207 None:intergenic 35.0%
CAGAAACGACTAATTTCTTC+AGG + Chr4:63535662-63535681 None:intergenic 35.0%
CAGCATATGGTTCACAAATA+GGG + Chr4:63535985-63536004 None:intergenic 35.0%
GACCATTTACGATTGTGATT+GGG - Chr4:63535749-63535768 MsG0480021723.01.T01:intron 35.0%
GATGTGTGTGTGATTATAGA+GGG - Chr4:63538011-63538030 MsG0480021723.01.T01:intron 35.0%
GATTACTGCACAAATCTAGT+CGG - Chr4:63535407-63535426 MsG0480021723.01.T01:intron 35.0%
GTGTTCCAACATCTAAGTAT+TGG + Chr4:63537340-63537359 None:intergenic 35.0%
TACGGTAAAGACACTAGTAA+TGG + Chr4:63536236-63536255 None:intergenic 35.0%
TCATTGACCAAACTGTGTTT+AGG - Chr4:63535591-63535610 MsG0480021723.01.T01:CDS 35.0%
TGACCATTTACGATTGTGAT+TGG - Chr4:63535748-63535767 MsG0480021723.01.T01:intron 35.0%
TGATTAGGTACTTGACTACT+TGG - Chr4:63536499-63536518 MsG0480021723.01.T01:intron 35.0%
TGGTCAACTCTTGTAAAACA+GGG + Chr4:63535734-63535753 None:intergenic 35.0%
TGTGTATTTCAGCTATTGAG+TGG - Chr4:63536010-63536029 MsG0480021723.01.T01:intron 35.0%
TTCTTACAGCATCTTTGGTA+GGG + Chr4:63535254-63535273 None:intergenic 35.0%
TTGTCTTTCAAACTTCAGCT+AGG - Chr4:63537076-63537095 MsG0480021723.01.T01:CDS 35.0%
TTTCATTGTTGCGGACATAT+GGG - Chr4:63537977-63537996 MsG0480021723.01.T01:intron 35.0%
TTTCCAGTTTAGGAGTCTTT+AGG + Chr4:63536362-63536381 None:intergenic 35.0%
TTTGGCCAATACTTAGATGT+TGG - Chr4:63537332-63537351 MsG0480021723.01.T01:intron 35.0%
! AGAGAAGATTTGAAACAGCA+AGG + Chr4:63536554-63536573 None:intergenic 35.0%
! AGAGTTGTGTCATCAAGTTT+TGG - Chr4:63536746-63536765 MsG0480021723.01.T01:CDS 35.0%
! GTCAGTTCAACAACTTTTCT+CGG - Chr4:63535704-63535723 MsG0480021723.01.T01:intron 35.0%
! TCAGTTCAACAACTTTTCTC+GGG - Chr4:63535705-63535724 MsG0480021723.01.T01:intron 35.0%
! TGACTACTATCGCTAGTTTA+TGG - Chr4:63536897-63536916 MsG0480021723.01.T01:CDS 35.0%
! TTTTCATTGTTGCGGACATA+TGG - Chr4:63537976-63537995 MsG0480021723.01.T01:intron 35.0%
!! TAACTTTTGCTGTGGTTTTC+AGG - Chr4:63538230-63538249 MsG0480021723.01.T01:CDS 35.0%
!! TGCTTTAAGATACAGGTGTT+TGG - Chr4:63537862-63537881 MsG0480021723.01.T01:intron 35.0%
!! TTTATTTTCTTCACCAGTGC+TGG - Chr4:63536408-63536427 MsG0480021723.01.T01:intron 35.0%
!! TTTTCAGGCTTCAAATTCTG+CGG - Chr4:63538245-63538264 MsG0480021723.01.T01:CDS 35.0%
AAAATAAAACGTACCACCCC+AGG + Chr4:63536396-63536415 None:intergenic 40.0%
AACTGACATCTCATCTGCAA+AGG + Chr4:63535691-63535710 None:intergenic 40.0%
AATACACACTGAGCAGCATA+TGG + Chr4:63535998-63536017 None:intergenic 40.0%
AATCCAAAGACATGATGTGG+CGG - Chr4:63535173-63535192 MsG0480021723.01.T01:CDS 40.0%
ACGACTAATTTCTTCAGGCT+AGG + Chr4:63535657-63535676 None:intergenic 40.0%
AGAGAGAACACACTTAAACG+TGG - Chr4:63537369-63537388 MsG0480021723.01.T01:CDS 40.0%
ATCTCGCAACTAGATCTAAG+AGG + Chr4:63535390-63535409 None:intergenic 40.0%
ATCTTGATCTCCCCCAAATA+TGG + Chr4:63536653-63536672 None:intergenic 40.0%
ATGTATCAACTACAGAGGTC+AGG + Chr4:63535943-63535962 None:intergenic 40.0%
ATTGGACAAACTCTGTTTGC+TGG - Chr4:63536954-63536973 MsG0480021723.01.T01:intron 40.0%
CATGATTAGCGATTTACCTG+AGG - Chr4:63535200-63535219 MsG0480021723.01.T01:intron 40.0%
CCAAAACATAACACGGTCTT+TGG - Chr4:63537032-63537051 MsG0480021723.01.T01:intron 40.0%
CGATGGTTAACTCCTTAATG+TGG + Chr4:63535805-63535824 None:intergenic 40.0%
CTAGGAAAACGAATACCGTT+AGG + Chr4:63535639-63535658 None:intergenic 40.0%
CTAGTGTCTTTACCGTACAA+AGG - Chr4:63536239-63536258 MsG0480021723.01.T01:intron 40.0%
CTCCCAATCACAATCGTAAA+TGG + Chr4:63535754-63535773 None:intergenic 40.0%
CTTCCGTATTAGCAAACAAG+TGG - Chr4:63535274-63535293 MsG0480021723.01.T01:intron 40.0%
CTTGAGTCCTAAACACAGTT+TGG + Chr4:63535601-63535620 None:intergenic 40.0%
GAGAGAACACACTTAAACGT+GGG - Chr4:63537370-63537389 MsG0480021723.01.T01:CDS 40.0%
GCAGCATATGGTTCACAAAT+AGG + Chr4:63535986-63536005 None:intergenic 40.0%
GCTATCCGAGTTCAAATAGT+CGG - Chr4:63537493-63537512 MsG0480021723.01.T01:CDS 40.0%
GGAAGTTCTTACAGCATCTT+TGG + Chr4:63535259-63535278 None:intergenic 40.0%
GTGATTGGGAGAATTTAGAG+CGG - Chr4:63535763-63535782 MsG0480021723.01.T01:intron 40.0%
GTTAGGTATGATTGAGTGCT+CGG - Chr4:63537190-63537209 MsG0480021723.01.T01:intron 40.0%
GTTCTTACAGCATCTTTGGT+AGG + Chr4:63535255-63535274 None:intergenic 40.0%
TAGAGAAGGTGGATGATGTT+CGG - Chr4:63536699-63536718 MsG0480021723.01.T01:intron 40.0%
TCTCCTAAAGACTCCTAAAC+TGG - Chr4:63536356-63536375 MsG0480021723.01.T01:intron 40.0%
TCTTGATCTCCCCCAAATAT+GGG + Chr4:63536652-63536671 None:intergenic 40.0%
TCTTTCAAACTTCAGCTAGG+TGG - Chr4:63537079-63537098 MsG0480021723.01.T01:CDS 40.0%
TGAAAAGCAAAAGACGGTTG+AGG + Chr4:63537962-63537981 None:intergenic 40.0%
TGCTTATGATCTCAAGCAAG+TGG + Chr4:63537571-63537590 None:intergenic 40.0%
TGGAAAGTCTTCAGATACCT+GGG - Chr4:63536376-63536395 MsG0480021723.01.T01:intron 40.0%
TGTGAAATCTAGGAAGGAGA+TGG + Chr4:63536272-63536291 None:intergenic 40.0%
TTCATTGTTGCGGACATATG+GGG - Chr4:63537978-63537997 MsG0480021723.01.T01:intron 40.0%
TTGGACAAACTCTGTTTGCT+GGG - Chr4:63536955-63536974 MsG0480021723.01.T01:intron 40.0%
! AAACTCTGTTTGCTGGGAAT+TGG - Chr4:63536961-63536980 MsG0480021723.01.T01:intron 40.0%
! AACTTGATGACACAACTCTC+TGG + Chr4:63536745-63536764 None:intergenic 40.0%
! ACTTGATGACACAACTCTCT+GGG + Chr4:63536744-63536763 None:intergenic 40.0%
! AGCTACCGACTATTTGAACT+CGG + Chr4:63537501-63537520 None:intergenic 40.0%
! ATTTGAAACAGCAAGGCACT+GGG + Chr4:63536547-63536566 None:intergenic 40.0%
! CAGTTCAACAACTTTTCTCG+GGG - Chr4:63535706-63535725 MsG0480021723.01.T01:intron 40.0%
! CCAAAGACCGTGTTATGTTT+TGG + Chr4:63537035-63537054 None:intergenic 40.0%
! CCTCCACTTGTTTGCTAATA+CGG + Chr4:63535280-63535299 None:intergenic 40.0%
! GGTAATGCAAGTTGAACTTG+AGG - Chr4:63537451-63537470 MsG0480021723.01.T01:CDS 40.0%
! GTGTTTGGAACAAGTTTCAC+AGG - Chr4:63537877-63537896 MsG0480021723.01.T01:intron 40.0%
! TTTCAGCTATTGAGTGGACT+TGG - Chr4:63536016-63536035 MsG0480021723.01.T01:intron 40.0%
!! TGGTTGCTGCTTTAAGATAC+AGG - Chr4:63537855-63537874 MsG0480021723.01.T01:intron 40.0%
ACACTTTCCACACAGGAACT+GGG + Chr4:63537397-63537416 None:intergenic 45.0%
ACTACAGAGGTCAGGTTAAC+AGG + Chr4:63535935-63535954 None:intergenic 45.0%
AGCATCTTTGGTAGGGAGTA+AGG + Chr4:63535247-63535266 None:intergenic 45.0%
AGTATGCTTAAGCGTGGCTT+TGG - Chr4:63537314-63537333 MsG0480021723.01.T01:intron 45.0%
ATCCAAAGACATGATGTGGC+GGG - Chr4:63535174-63535193 MsG0480021723.01.T01:CDS 45.0%
ATGTCATAGTGTGCGAGCTT+AGG + Chr4:63537150-63537169 None:intergenic 45.0%
CCACAGCAAAAGTTAGACCA+AGG + Chr4:63538225-63538244 None:intergenic 45.0%
CCGTATTAGCAAACAAGTGG+AGG - Chr4:63535277-63535296 MsG0480021723.01.T01:intron 45.0%
CTACAGAGGTCAGGTTAACA+GGG + Chr4:63535934-63535953 None:intergenic 45.0%
CTGGAAAGTCTTCAGATACC+TGG - Chr4:63536375-63536394 MsG0480021723.01.T01:intron 45.0%
CTTGATCTCCCCCAAATATG+GGG + Chr4:63536651-63536670 None:intergenic 45.0%
GGAAAGTCTTCAGATACCTG+GGG - Chr4:63536377-63536396 MsG0480021723.01.T01:intron 45.0%
GGTAAGAATGGACATGCTCT+CGG - Chr4:63538282-63538301 MsG0480021723.01.T01:CDS 45.0%
GTGGAACACATTGAATGCCT+TGG - Chr4:63538205-63538224 MsG0480021723.01.T01:CDS 45.0%
TCATTGTTGCGGACATATGG+GGG - Chr4:63537979-63537998 MsG0480021723.01.T01:intron 45.0%
TCGGAACCATTGGAAGATGT+AGG - Chr4:63536718-63536737 MsG0480021723.01.T01:CDS 45.0%
TGGATGATGTTCGGAACCAT+TGG - Chr4:63536708-63536727 MsG0480021723.01.T01:intron 45.0%
TGTCATAGTGTGCGAGCTTA+GGG + Chr4:63537149-63537168 None:intergenic 45.0%
TTCAGCAGTATGCTTAAGCG+TGG - Chr4:63537308-63537327 MsG0480021723.01.T01:intron 45.0%
! AGTTCCTGTGTGGAAAGTGT+GGG - Chr4:63537397-63537416 MsG0480021723.01.T01:CDS 45.0%
! CCTTGGTCTAACTTTTGCTG+TGG - Chr4:63538222-63538241 MsG0480021723.01.T01:CDS 45.0%
! CTGGCTGTTTCATTGTTACG+TGG - Chr4:63538186-63538205 MsG0480021723.01.T01:CDS 45.0%
! GATTTGAAACAGCAAGGCAC+TGG + Chr4:63536548-63536567 None:intergenic 45.0%
!! CAAACAAGTGGAGGCACTTA+TGG - Chr4:63535286-63535305 MsG0480021723.01.T01:intron 45.0%
!! CTTTAGGATCGTGTGGAGTA+TGG - Chr4:63537262-63537281 MsG0480021723.01.T01:intron 45.0%
!! GATGGAGAGCATCCTTTGTA+CGG + Chr4:63536254-63536273 None:intergenic 45.0%
AAGTCTTCAGATACCTGGGG+TGG - Chr4:63536380-63536399 MsG0480021723.01.T01:intron 50.0%
CACACTTTCCACACAGGAAC+TGG + Chr4:63537398-63537417 None:intergenic 50.0%
CAGTTCCTGTGTGGAAAGTG+TGG - Chr4:63537396-63537415 MsG0480021723.01.T01:CDS 50.0%
CATTGTTGCGGACATATGGG+GGG - Chr4:63537980-63537999 MsG0480021723.01.T01:intron 50.0%
CGTGTGGAGTATGGACATAG+TGG - Chr4:63537271-63537290 MsG0480021723.01.T01:intron 50.0%
CTTCCTGCTGCAGGTAAGAA+TGG - Chr4:63538270-63538289 MsG0480021723.01.T01:CDS 50.0%
GTCATAGTGTGCGAGCTTAG+GGG + Chr4:63537148-63537167 None:intergenic 50.0%
TCATAGTGTGCGAGCTTAGG+GGG + Chr4:63537147-63537166 None:intergenic 50.0%
TCTGGGCCTACATCTTCCAA+TGG + Chr4:63536727-63536746 None:intergenic 50.0%
TGTCCATTCTTACCTGCAGC+AGG + Chr4:63538276-63538295 None:intergenic 50.0%
! GGAGTATGGACATAGTGGAG+AGG - Chr4:63537276-63537295 MsG0480021723.01.T01:intron 50.0%
!! GTTGGGTCTTTAGGATCGTG+TGG - Chr4:63537255-63537274 MsG0480021723.01.T01:intron 50.0%
ACCTCCCACACTTTCCACAC+AGG + Chr4:63537404-63537423 None:intergenic 55.0%
ATAGTGTGCGAGCTTAGGGG+GGG + Chr4:63537145-63537164 None:intergenic 55.0%
CATAGTGTGCGAGCTTAGGG+GGG + Chr4:63537146-63537165 None:intergenic 55.0%
TGCGGACATATGGGGGGATT+TGG - Chr4:63537986-63538005 MsG0480021723.01.T01:intron 55.0%
! TCCTGTGTGGAAAGTGTGGG+AGG - Chr4:63537400-63537419 MsG0480021723.01.T01:CDS 55.0%
CGCCCGCCACATCATGTCTT+TGG + Chr4:63535179-63535198 None:intergenic 60.0%
TAGTGTGCGAGCTTAGGGGG+GGG + Chr4:63537144-63537163 None:intergenic 60.0%
CGTGGGTCCCAGTTCCTGTG+TGG - Chr4:63537387-63537406 MsG0480021723.01.T01:CDS 65.0%
TCTGCGGTGCTTCCTGCTGC+AGG - Chr4:63538261-63538280 MsG0480021723.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 63535138 63538308 63535138 ID=MsG0480021723.01;Name=MsG0480021723.01
Chr4 mRNA 63535138 63538308 63535138 ID=MsG0480021723.01.T01;Parent=MsG0480021723.01;Name=MsG0480021723.01.T01;_AED=0.50;_eAED=0.58;_QI=0|0|0|1|1|1|8|0|379
Chr4 exon 63538022 63538308 63538022 ID=MsG0480021723.01.T01:exon:3607;Parent=MsG0480021723.01.T01
Chr4 exon 63537368 63537605 63537368 ID=MsG0480021723.01.T01:exon:3608;Parent=MsG0480021723.01.T01
Chr4 exon 63537045 63537203 63537045 ID=MsG0480021723.01.T01:exon:3609;Parent=MsG0480021723.01.T01
Chr4 exon 63536711 63536940 63536711 ID=MsG0480021723.01.T01:exon:3610;Parent=MsG0480021723.01.T01
Chr4 exon 63536132 63536178 63536132 ID=MsG0480021723.01.T01:exon:3611;Parent=MsG0480021723.01.T01
Chr4 exon 63535570 63535645 63535570 ID=MsG0480021723.01.T01:exon:3612;Parent=MsG0480021723.01.T01
Chr4 exon 63535303 63535348 63535303 ID=MsG0480021723.01.T01:exon:3613;Parent=MsG0480021723.01.T01
Chr4 exon 63535138 63535194 63535138 ID=MsG0480021723.01.T01:exon:3614;Parent=MsG0480021723.01.T01
Chr4 CDS 63538022 63538308 63538022 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63537368 63537605 63537368 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63537045 63537203 63537045 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63536711 63536940 63536711 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63536132 63536178 63536132 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63535570 63535645 63535570 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63535303 63535348 63535303 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Chr4 CDS 63535138 63535194 63535138 ID=MsG0480021723.01.T01:cds;Parent=MsG0480021723.01.T01
Gene Sequence

>MsG0480021723.01.T01

ATGGTCGGTACAATCTCAACAACCAATATGCATAAAATCCAAAGACATGATGTGGCGGGCGACATGATTAGCGATTTACCTGAGGAAGTTCTTCTTCATATTCTTTCCTTACTCCCTACCAAAGATGCTGTAAGAACTTCCGTATTAGCAAACAAGTGGAGGCACTTATGGACCTACTTATCTGCCTTTGATTTTGAAACTGTTCAATATGACTCAAAAAAGAAAAATCAAAAGAACACGGGCAAATTGCCTCTTAGATCTAGTTGCGAGATTACTGCACAAATCTATGTTGATTATGATCATCATATGAAACTCATGATTGATGCTGTGAATCTTTTATCGTTAAGTTGCACATGCAGTCAACCAATAGATATTATCCCTGTTAACCTGACCTCTGTAGTTGATACATCTATTGATTTTGAGTATCACCCTATTTGTGAACCATATGCTGCTCAGTGTGTATTTCAGCTATTGAGTGGACTTGGTAGTGTTCAGTCTCTCACACTATATAATAATACTCTTGAGTGTCTTTACCGTACAAAGGATGCTCTCCATCTCCTTCCTAGATTTCACAAATTGACACATCTTTATGTGTTTCGTGGGAGTTTCGATTTCACTGATGAAGTACTAATGGAAATTCTCCTAAAGACTCCTAAACTGGAAAGTCTTCAGATACCTGGGGTGGTACTTGACTACTTGGATGATGAAGATTTGATATTGAACCCAGTGCCTTGCTGTTTCAAATCTTCTCTCAATCGATTATGCTTTTTAAATTTTTATGGAAATGAAGATGAAATTGAATTCGTTATGTTTATCTTAAAAAATGCCCCATATTTGGGGGAGATCAAGATATACTGTTCGAGACATTTATCAGATATAGAGAAGGTGGATGATGTTCGGAACCATTGGAAGATGATCGTGTGGAGTATGGACATAGTGGAGAGGAAACTTAGTTTCAGCAGTTTTTATACTATGATCTTTTCAAGATATGAGCCTAGATTAGTTCTTTCAGATTTGGTTGCTGCTTTAAGATACAGTTACAGCTACTATGAACAATCTGACGATGAATCTGATGAAGATGAAGCTTCAAATTCTGCGGTGCTTCCTGCTGCAGGTAAGAATGGACATGCTCTCGGCTGA

Protein sequence

>MsG0480021723.01.T01

MVGTISTTNMHKIQRHDVAGDMISDLPEEVLLHILSLLPTKDAVRTSVLANKWRHLWTYLSAFDFETVQYDSKKKNQKNTGKLPLRSSCEITAQIYVDYDHHMKLMIDAVNLLSLSCTCSQPIDIIPVNLTSVVDTSIDFEYHPICEPYAAQCVFQLLSGLGSVQSLTLYNNTLECLYRTKDALHLLPRFHKLTHLYVFRGSFDFTDEVLMEILLKTPKLESLQIPGVVLDYLDDEDLILNPVPCCFKSSLNRLCFLNFYGNEDEIEFVMFILKNAPYLGEIKIYCSRHLSDIEKVDDVRNHWKMIVWSMDIVERKLSFSSFYTMIFSRYEPRLVLSDLVAALRYSYSYYEQSDDESDEDEASNSAVLPAAGKNGHALG*