Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013669.01.T01 | XP_003599874.2 | 74.528 | 318 | 27 | 2 | 28 | 291 | 1 | 318 | 1.07E-153 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013669.01.T01 | Q94B46 | 29.032 | 310 | 157 | 8 | 50 | 300 | 8 | 313 | 8.41E-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013669.01.T01 | G7IXZ7 | 74.528 | 318 | 27 | 2 | 28 | 291 | 1 | 318 | 5.11e-154 | 449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013669.01.T01 | MTR_3g048290 | 74.528 | 318 | 27 | 2 | 28 | 291 | 1 | 318 | 1.30e-157 | 449 |
| MsG0380013669.01.T01 | MTR_4g080787 | 67.317 | 205 | 65 | 1 | 88 | 292 | 120 | 322 | 8.29e-85 | 263 |
| MsG0380013669.01.T01 | MTR_4g080787 | 77.778 | 54 | 9 | 1 | 34 | 87 | 6 | 56 | 5.89e-18 | 84.3 |
| MsG0380013669.01.T01 | MTR_4g080773 | 64.563 | 206 | 72 | 1 | 88 | 292 | 120 | 325 | 3.84e-80 | 251 |
| MsG0380013669.01.T01 | MTR_4g080773 | 77.778 | 54 | 9 | 1 | 34 | 87 | 6 | 56 | 6.83e-18 | 84.0 |
| MsG0380013669.01.T01 | MTR_4g080773 | 64.563 | 206 | 72 | 1 | 88 | 292 | 120 | 325 | 4.47e-80 | 251 |
| MsG0380013669.01.T01 | MTR_4g080773 | 77.778 | 54 | 9 | 1 | 34 | 87 | 6 | 56 | 6.41e-18 | 84.0 |
| MsG0380013669.01.T01 | MTR_4g080590 | 45.541 | 314 | 120 | 4 | 28 | 292 | 1 | 312 | 4.48e-73 | 229 |
| MsG0380013669.01.T01 | MTR_4g080590 | 45.541 | 314 | 120 | 4 | 28 | 292 | 1 | 312 | 3.91e-72 | 229 |
| MsG0380013669.01.T01 | MTR_5g039970 | 47.115 | 312 | 110 | 3 | 32 | 288 | 1 | 312 | 9.43e-70 | 219 |
| MsG0380013669.01.T01 | MTR_4g130200 | 46.479 | 284 | 99 | 4 | 28 | 292 | 1 | 250 | 5.38e-66 | 212 |
| MsG0380013669.01.T01 | MTR_4g080807 | 57.214 | 201 | 51 | 2 | 87 | 286 | 18 | 184 | 1.17e-61 | 201 |
| MsG0380013669.01.T01 | MTR_7g023310 | 44.186 | 301 | 112 | 7 | 28 | 273 | 1 | 300 | 1.55e-61 | 202 |
| MsG0380013669.01.T01 | MTR_7g039630 | 43.816 | 283 | 137 | 5 | 28 | 288 | 1 | 283 | 1.92e-61 | 199 |
| MsG0380013669.01.T01 | MTR_5g039950 | 42.140 | 299 | 109 | 6 | 28 | 288 | 1 | 273 | 1.27e-58 | 193 |
| MsG0380013669.01.T01 | MTR_4g081030 | 38.621 | 290 | 133 | 4 | 40 | 286 | 7 | 294 | 6.56e-45 | 157 |
| MsG0380013669.01.T01 | MTR_7g023330 | 41.418 | 268 | 137 | 7 | 33 | 292 | 3 | 258 | 1.21e-44 | 156 |
| MsG0380013669.01.T01 | MTR_2g094750 | 46.789 | 218 | 96 | 8 | 87 | 288 | 193 | 406 | 3.52e-38 | 141 |
| MsG0380013669.01.T01 | MTR_4g080813 | 73.214 | 56 | 15 | 0 | 32 | 87 | 1 | 56 | 2.32e-21 | 87.0 |
| MsG0380013669.01.T01 | MTR_8g467800 | 25.949 | 316 | 169 | 7 | 41 | 300 | 11 | 317 | 3.02e-16 | 78.6 |
| MsG0380013669.01.T01 | MTR_2g094450 | 51.724 | 87 | 39 | 2 | 174 | 257 | 30 | 116 | 5.32e-16 | 75.5 |
| MsG0380013669.01.T01 | MTR_8g467800 | 26.316 | 304 | 159 | 7 | 41 | 288 | 11 | 305 | 8.40e-15 | 74.7 |
| MsG0380013669.01.T01 | MTR_2g007500 | 28.972 | 214 | 98 | 7 | 50 | 213 | 14 | 223 | 9.03e-14 | 71.2 |
| MsG0380013669.01.T01 | MTR_1g082260 | 37.288 | 118 | 63 | 2 | 92 | 202 | 62 | 175 | 3.50e-13 | 67.0 |
| MsG0380013669.01.T01 | MTR_5g008920 | 30.508 | 177 | 78 | 3 | 52 | 183 | 14 | 190 | 2.58e-12 | 67.0 |
| MsG0380013669.01.T01 | MTR_4g032730 | 28.384 | 229 | 144 | 6 | 72 | 292 | 90 | 306 | 3.21e-12 | 67.0 |
| MsG0380013669.01.T01 | MTR_7g007370 | 33.553 | 152 | 75 | 4 | 50 | 184 | 17 | 159 | 3.67e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013669.01.T01 | AT4G14096 | 29.032 | 310 | 157 | 8 | 50 | 300 | 8 | 313 | 8.58e-22 | 95.5 |
| MsG0380013669.01.T01 | AT4G14096 | 29.032 | 310 | 157 | 8 | 50 | 300 | 8 | 313 | 8.58e-22 | 95.5 |
| MsG0380013669.01.T01 | AT4G14103 | 30.534 | 262 | 123 | 7 | 50 | 257 | 8 | 264 | 6.96e-20 | 89.4 |
| MsG0380013669.01.T01 | AT4G14103 | 30.534 | 262 | 123 | 7 | 50 | 257 | 8 | 264 | 6.96e-20 | 89.4 |
| MsG0380013669.01.T01 | AT4G22280 | 28.322 | 286 | 148 | 6 | 50 | 288 | 2 | 277 | 1.24e-19 | 87.8 |
| MsG0380013669.01.T01 | AT4G14103 | 30.534 | 262 | 123 | 7 | 50 | 257 | 8 | 264 | 1.24e-19 | 89.0 |
| MsG0380013669.01.T01 | AT4G22280 | 28.322 | 286 | 148 | 6 | 50 | 288 | 2 | 277 | 4.13e-19 | 87.4 |
| MsG0380013669.01.T01 | AT3G59250 | 33.190 | 232 | 126 | 7 | 50 | 258 | 7 | 232 | 2.34e-18 | 85.1 |
| MsG0380013669.01.T01 | AT3G26922 | 30.168 | 179 | 104 | 1 | 50 | 207 | 14 | 192 | 3.36e-18 | 83.2 |
| MsG0380013669.01.T01 | AT4G00315 | 28.151 | 238 | 115 | 6 | 50 | 235 | 2 | 235 | 5.96e-18 | 84.0 |
| MsG0380013669.01.T01 | AT3G59240 | 26.708 | 322 | 166 | 11 | 45 | 300 | 1 | 318 | 3.66e-17 | 82.0 |
| MsG0380013669.01.T01 | AT1G55660 | 28.631 | 241 | 114 | 6 | 45 | 232 | 48 | 283 | 5.54e-17 | 80.9 |
| MsG0380013669.01.T01 | AT1G55660 | 28.631 | 241 | 114 | 6 | 45 | 232 | 48 | 283 | 1.66e-16 | 80.1 |
| MsG0380013669.01.T01 | AT3G59210 | 25.857 | 321 | 165 | 9 | 50 | 300 | 7 | 324 | 1.76e-16 | 79.7 |
| MsG0380013669.01.T01 | AT3G59210 | 25.857 | 321 | 165 | 9 | 50 | 300 | 7 | 324 | 1.76e-16 | 79.7 |
| MsG0380013669.01.T01 | AT3G59210 | 25.857 | 321 | 165 | 9 | 50 | 300 | 7 | 324 | 1.76e-16 | 79.7 |
| MsG0380013669.01.T01 | AT3G59210 | 25.857 | 321 | 165 | 9 | 50 | 300 | 7 | 324 | 1.76e-16 | 79.7 |
| MsG0380013669.01.T01 | AT3G59210 | 25.857 | 321 | 165 | 9 | 50 | 300 | 7 | 324 | 1.76e-16 | 79.7 |
| MsG0380013669.01.T01 | AT3G58960 | 27.000 | 300 | 157 | 8 | 50 | 288 | 2 | 300 | 2.04e-16 | 79.7 |
| MsG0380013669.01.T01 | AT3G44810 | 26.421 | 299 | 159 | 9 | 55 | 295 | 12 | 307 | 2.32e-16 | 79.3 |
| MsG0380013669.01.T01 | AT4G13965 | 28.780 | 205 | 96 | 3 | 50 | 207 | 10 | 211 | 1.47e-15 | 77.0 |
| MsG0380013669.01.T01 | AT5G38590 | 26.136 | 264 | 133 | 6 | 50 | 260 | 2 | 256 | 2.15e-15 | 75.5 |
| MsG0380013669.01.T01 | AT4G26340 | 27.000 | 300 | 157 | 9 | 50 | 300 | 2 | 288 | 2.92e-15 | 75.9 |
| MsG0380013669.01.T01 | AT3G62430 | 27.333 | 300 | 148 | 13 | 50 | 289 | 2 | 291 | 3.58e-15 | 75.9 |
| MsG0380013669.01.T01 | AT5G38590 | 26.136 | 264 | 133 | 6 | 50 | 260 | 2 | 256 | 5.15e-15 | 75.1 |
| MsG0380013669.01.T01 | AT3G52680 | 28.873 | 284 | 139 | 7 | 49 | 284 | 20 | 288 | 6.45e-15 | 74.7 |
| MsG0380013669.01.T01 | AT3G52680 | 28.873 | 284 | 139 | 7 | 49 | 284 | 20 | 288 | 9.44e-15 | 74.7 |
| MsG0380013669.01.T01 | AT5G38390 | 27.059 | 255 | 129 | 6 | 50 | 257 | 2 | 246 | 1.32e-14 | 74.3 |
| MsG0380013669.01.T01 | AT1G78750 | 27.612 | 268 | 126 | 8 | 50 | 256 | 18 | 278 | 1.70e-14 | 73.9 |
| MsG0380013669.01.T01 | AT1G78750 | 27.612 | 268 | 126 | 8 | 50 | 256 | 18 | 278 | 1.70e-14 | 73.9 |
| MsG0380013669.01.T01 | AT3G60040 | 32.738 | 168 | 108 | 5 | 93 | 258 | 121 | 285 | 7.90e-14 | 72.0 |
| MsG0380013669.01.T01 | AT3G60040 | 30.964 | 197 | 128 | 6 | 93 | 287 | 338 | 528 | 1.10e-13 | 71.6 |
| MsG0380013669.01.T01 | AT3G60040 | 30.964 | 197 | 128 | 6 | 93 | 287 | 340 | 530 | 1.13e-13 | 71.6 |
| MsG0380013669.01.T01 | AT3G60040 | 30.964 | 197 | 128 | 6 | 93 | 287 | 340 | 530 | 1.28e-13 | 71.6 |
| MsG0380013669.01.T01 | AT5G52460 | 33.333 | 144 | 83 | 1 | 49 | 179 | 16 | 159 | 1.32e-13 | 70.9 |
| MsG0380013669.01.T01 | AT3G60040 | 30.964 | 197 | 128 | 6 | 93 | 287 | 341 | 531 | 1.38e-13 | 71.6 |
| MsG0380013669.01.T01 | AT3G50710 | 42.045 | 88 | 50 | 1 | 121 | 207 | 124 | 211 | 3.81e-13 | 69.7 |
| MsG0380013669.01.T01 | AT3G59200 | 29.046 | 241 | 137 | 8 | 86 | 300 | 97 | 329 | 1.01e-12 | 68.2 |
| MsG0380013669.01.T01 | AT4G15060 | 28.251 | 223 | 107 | 5 | 44 | 213 | 18 | 240 | 2.08e-12 | 67.4 |
| MsG0380013669.01.T01 | AT3G59200 | 29.046 | 241 | 137 | 8 | 86 | 300 | 97 | 329 | 2.20e-12 | 67.8 |
| MsG0380013669.01.T01 | AT3G51530 | 28.175 | 252 | 133 | 8 | 49 | 255 | 29 | 277 | 3.46e-12 | 67.0 |
| MsG0380013669.01.T01 | AT1G51370 | 29.126 | 206 | 104 | 4 | 44 | 208 | 13 | 217 | 4.55e-12 | 66.2 |
| MsG0380013669.01.T01 | AT1G51370 | 29.126 | 206 | 104 | 4 | 44 | 208 | 13 | 217 | 4.93e-12 | 66.2 |
| MsG0380013669.01.T01 | AT1G51370 | 29.126 | 206 | 104 | 4 | 44 | 208 | 13 | 217 | 4.94e-12 | 66.6 |
| MsG0380013669.01.T01 | AT4G15060 | 27.907 | 215 | 104 | 4 | 50 | 213 | 172 | 386 | 6.75e-12 | 66.2 |
| MsG0380013669.01.T01 | AT3G58900 | 32.749 | 171 | 110 | 5 | 88 | 257 | 95 | 261 | 7.93e-12 | 65.1 |
| MsG0380013669.01.T01 | AT3G58900 | 32.749 | 171 | 110 | 5 | 88 | 257 | 95 | 261 | 9.40e-12 | 65.1 |
| MsG0380013669.01.T01 | AT3G58900 | 32.749 | 171 | 110 | 5 | 88 | 257 | 95 | 261 | 9.40e-12 | 65.1 |
| MsG0380013669.01.T01 | AT3G58900 | 32.749 | 171 | 110 | 5 | 88 | 257 | 95 | 261 | 1.09e-11 | 65.5 |
| MsG0380013669.01.T01 | AT1G64540 | 30.385 | 260 | 136 | 12 | 49 | 266 | 4 | 260 | 1.82e-11 | 64.7 |
| MsG0380013669.01.T01 | AT1G64540 | 30.385 | 260 | 136 | 12 | 49 | 266 | 4 | 260 | 1.82e-11 | 64.7 |
| MsG0380013669.01.T01 | AT5G56430 | 29.341 | 167 | 89 | 6 | 52 | 213 | 4 | 146 | 2.17e-11 | 64.3 |
| MsG0380013669.01.T01 | AT5G38590 | 28.492 | 179 | 113 | 5 | 88 | 260 | 52 | 221 | 2.24e-11 | 63.2 |
| MsG0380013669.01.T01 | AT1G50980 | 32.738 | 168 | 91 | 6 | 38 | 186 | 20 | 184 | 2.69e-11 | 63.9 |
| MsG0380013669.01.T01 | AT3G58950 | 27.315 | 216 | 139 | 7 | 50 | 257 | 2 | 207 | 2.96e-11 | 63.9 |
Find 53 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCACTTCTTTGCTAATA+TGG | 0.194272 | 3:+43032805 | None:intergenic |
| GTGTCTCAATTTCCACATTA+AGG | 0.232128 | 3:-43032290 | MsG0380013669.01.T01:CDS |
| TGGAATTGGATAATTGTTAT+TGG | 0.248495 | 3:-43032332 | MsG0380013669.01.T01:CDS |
| ACAGGGATAAATTCTATTAT+TGG | 0.259416 | 3:+43032165 | None:intergenic |
| ACTAGGGAGGTCAGGTTAAC+AGG | 0.276184 | 3:+43032147 | None:intergenic |
| GGAATTGGATAATTGTTATT+GGG | 0.334917 | 3:-43032331 | MsG0380013669.01.T01:CDS |
| TCATTAAATGAATTGCGTTT+AGG | 0.349692 | 3:-43032489 | MsG0380013669.01.T01:CDS |
| TGCACATCGGTTGATGAGAT+TGG | 0.364438 | 3:+43032941 | None:intergenic |
| GATAAATTCTATTATTGGTC+TGG | 0.381762 | 3:+43032170 | None:intergenic |
| GTTGATGCAATCATTGATCT+TGG | 0.395966 | 3:-43032126 | MsG0380013669.01.T01:CDS |
| TGTCTTACAAGAGTTGGAAT+TGG | 0.404698 | 3:-43032346 | MsG0380013669.01.T01:CDS |
| ACTAAATAATATTATTATTG+AGG | 0.421584 | 3:-43032022 | MsG0380013669.01.T01:CDS |
| GGCCAAGATATTGTAGTTTG+TGG | 0.422529 | 3:+43032571 | None:intergenic |
| AACCACAAACTACAATATCT+TGG | 0.427056 | 3:-43032573 | MsG0380013669.01.T01:CDS |
| TGGAAATTGAGACACTAATC+TGG | 0.437668 | 3:+43032298 | None:intergenic |
| ACTACCAATGTCTTCAAGCT+AGG | 0.453138 | 3:+43032426 | None:intergenic |
| TCAACAGCTATTATCTATGT+TGG | 0.478409 | 3:-43033596 | MsG0380013669.01.T01:CDS |
| GTGTTCAATTGAGCTATTGA+AGG | 0.484023 | 3:-43032070 | MsG0380013669.01.T01:CDS |
| AATTCCAACTCTTGTAAGAC+AGG | 0.484769 | 3:+43032348 | None:intergenic |
| ATTGAACACTGAGCAGCATA+TGG | 0.489422 | 3:+43032084 | None:intergenic |
| CAATATCTTGGCCTTTCACT+AGG | 0.490864 | 3:-43032561 | MsG0380013669.01.T01:CDS |
| ATTGAGCTATTGAAGGGACT+TGG | 0.497912 | 3:-43032063 | MsG0380013669.01.T01:CDS |
| CAGCTATTATCTATGTTGGT+AGG | 0.502983 | 3:-43033592 | MsG0380013669.01.T01:CDS |
| TTGCATCAACTAGGGAGGTC+AGG | 0.512234 | 3:+43032139 | None:intergenic |
| TTGATGCAATCATTGATCTT+GGG | 0.514126 | 3:-43032125 | MsG0380013669.01.T01:CDS |
| GATGGTCAATTTCCTTAATG+TGG | 0.515672 | 3:+43032278 | None:intergenic |
| TGTCATCCACATTATGTCGT+TGG | 0.519049 | 3:+43032912 | None:intergenic |
| CAGGTAGCACAGGTCATGGC+TGG | 0.524043 | 3:-43032965 | MsG0380013669.01.T01:CDS |
| CTTCCATATTAGCAAAGAAG+TGG | 0.526172 | 3:-43032808 | MsG0380013669.01.T01:CDS |
| TGAGCAGGTAGCACAGGTCA+TGG | 0.532345 | 3:-43032969 | MsG0380013669.01.T01:intron |
| CTACCAATGTCTTCAAGCTA+GGG | 0.551601 | 3:+43032427 | None:intergenic |
| AGCCGAGTTCTCATTTGCAA+AGG | 0.555852 | 3:+43032392 | None:intergenic |
| ATCAATGATTGCATCAACTA+GGG | 0.559437 | 3:+43032131 | None:intergenic |
| GTGCCCTGTCTTACAAGAGT+TGG | 0.561158 | 3:-43032352 | MsG0380013669.01.T01:CDS |
| CATTTCGATCACCTAGTGAA+AGG | 0.566923 | 3:+43032550 | None:intergenic |
| ATACGAAGAAGAACGCCCTC+AGG | 0.568089 | 3:+43032866 | None:intergenic |
| GATCAATGATTGCATCAACT+AGG | 0.571932 | 3:+43032130 | None:intergenic |
| TACCTTTGCAAATGAGAACT+CGG | 0.572942 | 3:-43032394 | MsG0380013669.01.T01:CDS |
| CTAGGGAAACAAATACCACT+AGG | 0.574672 | 3:+43032444 | None:intergenic |
| ACTAACTTTGTCTGTATCAA+CGG | 0.575187 | 3:+43032617 | None:intergenic |
| CTAGGGAGGTCAGGTTAACA+GGG | 0.575242 | 3:+43032148 | None:intergenic |
| TAAGATCCAACGACATAATG+TGG | 0.578294 | 3:-43032918 | MsG0380013669.01.T01:CDS |
| TTTCCCTAGCTTGAAGACAT+TGG | 0.578602 | 3:-43032430 | MsG0380013669.01.T01:CDS |
| TGTTCAATTGAGCTATTGAA+GGG | 0.579270 | 3:-43032069 | MsG0380013669.01.T01:CDS |
| ACCACACATAAGAAAACTGA+TGG | 0.600044 | 3:+43032260 | None:intergenic |
| GCAGCATATGGTTCATCATG+TGG | 0.629448 | 3:+43032096 | None:intergenic |
| TCGAAAGCAACGAAACTATG+TGG | 0.644704 | 3:+43032513 | None:intergenic |
| ATGATTAGTGACTTACCTGA+GGG | 0.657684 | 3:-43032881 | MsG0380013669.01.T01:CDS |
| TCGTTGGATCTTATGCACAT+CGG | 0.665599 | 3:+43032928 | None:intergenic |
| TATGATTAGTGACTTACCTG+AGG | 0.681528 | 3:-43032882 | MsG0380013669.01.T01:CDS |
| AATGATTGCATCAACTAGGG+AGG | 0.681703 | 3:+43032134 | None:intergenic |
| ATTCCAACTCTTGTAAGACA+GGG | 0.695262 | 3:+43032349 | None:intergenic |
| TTCACTCTACACATTCCTAG+TGG | 0.705572 | 3:-43032459 | MsG0380013669.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATGTAAACTAATA+AGG | + | Chr3:43032593-43032612 | None:intergenic | 10.0% |
| !! | ACTAAATAATATTATTATTG+AGG | - | Chr3:43033579-43033598 | MsG0380013669.01.T01:CDS | 10.0% |
| !!! | TTAATTTAATATTTTTGAGC+AGG | - | Chr3:43032617-43032636 | MsG0380013669.01.T01:CDS | 15.0% |
| !! | AGTTACAAGTAAAAAAAGAA+GGG | + | Chr3:43032570-43032589 | None:intergenic | 20.0% |
| ! | ACAGGGATAAATTCTATTAT+TGG | + | Chr3:43033439-43033458 | None:intergenic | 25.0% |
| ! | ACTACAAGTTTGAAAATGAA+AGG | + | Chr3:43032844-43032863 | None:intergenic | 25.0% |
| ! | GAGTTACAAGTAAAAAAAGA+AGG | + | Chr3:43032571-43032590 | None:intergenic | 25.0% |
| ! | GATAAATTCTATTATTGGTC+TGG | + | Chr3:43033434-43033453 | None:intergenic | 25.0% |
| ! | TCATTAAATGAATTGCGTTT+AGG | - | Chr3:43033112-43033131 | MsG0380013669.01.T01:intron | 25.0% |
| ! | TGCAGTTCAAAAAAAATACT+TGG | - | Chr3:43032396-43032415 | MsG0380013669.01.T01:CDS | 25.0% |
| ! | TGGAATTGGATAATTGTTAT+TGG | - | Chr3:43033269-43033288 | MsG0380013669.01.T01:intron | 25.0% |
| !! | GGAATTGGATAATTGTTATT+GGG | - | Chr3:43033270-43033289 | MsG0380013669.01.T01:intron | 25.0% |
| !!! | CTTGTTTTTTTGAGCTTTTT+TGG | - | Chr3:43032190-43032209 | MsG0380013669.01.T01:CDS | 25.0% |
| !!! | GTCATGTATATGGAATTTTT+TGG | - | Chr3:43032268-43032287 | MsG0380013669.01.T01:CDS | 25.0% |
| !!! | TTTTTGGAAAATCCTTTTTG+TGG | - | Chr3:43032284-43032303 | MsG0380013669.01.T01:CDS | 25.0% |
| AAAAAAAATACTTGGCGCAA+TGG | - | Chr3:43032404-43032423 | MsG0380013669.01.T01:CDS | 30.0% | |
| AAAATGAAAGGCAGATAAGT+AGG | + | Chr3:43032832-43032851 | None:intergenic | 30.0% | |
| AACCACAAACTACAATATCT+TGG | - | Chr3:43033028-43033047 | MsG0380013669.01.T01:intron | 30.0% | |
| ACTAACTTTGTCTGTATCAA+CGG | + | Chr3:43032987-43033006 | None:intergenic | 30.0% | |
| ATCAATGATTGCATCAACTA+GGG | + | Chr3:43033473-43033492 | None:intergenic | 30.0% | |
| CATCATCTTGTGTAAAAAGT+AGG | - | Chr3:43032476-43032495 | MsG0380013669.01.T01:CDS | 30.0% | |
| CTTGTGTAAAAAGTAGGATA+AGG | - | Chr3:43032482-43032501 | MsG0380013669.01.T01:CDS | 30.0% | |
| TCAACAGCTATTATCTATGT+TGG | - | Chr3:43032005-43032024 | MsG0380013669.01.T01:CDS | 30.0% | |
| TGTTCAATTGAGCTATTGAA+GGG | - | Chr3:43033532-43033551 | MsG0380013669.01.T01:intron | 30.0% | |
| TTGATGCAATCATTGATCTT+GGG | - | Chr3:43033476-43033495 | MsG0380013669.01.T01:intron | 30.0% | |
| TTTCCACTTCTTTGCTAATA+TGG | + | Chr3:43032799-43032818 | None:intergenic | 30.0% | |
| !!! | TTTGCCTTGTTTTTCTGATT+TGG | + | Chr3:43032884-43032903 | None:intergenic | 30.0% |
| !!! | TTTTAGGTTCGTCATGTATA+TGG | - | Chr3:43032258-43032277 | MsG0380013669.01.T01:CDS | 30.0% |
| AATTCCAACTCTTGTAAGAC+AGG | + | Chr3:43033256-43033275 | None:intergenic | 35.0% | |
| AATTGCCTCTTAGATCTAGT+TGG | - | Chr3:43032902-43032921 | MsG0380013669.01.T01:CDS | 35.0% | |
| ACCACACATAAGAAAACTGA+TGG | + | Chr3:43033344-43033363 | None:intergenic | 35.0% | |
| AGCAATTTAGTGTGAAGTCT+CGG | - | Chr3:43032134-43032153 | MsG0380013669.01.T01:CDS | 35.0% | |
| ATGATTAGTGACTTACCTGA+GGG | - | Chr3:43032720-43032739 | MsG0380013669.01.T01:intron | 35.0% | |
| ATTCCAACTCTTGTAAGACA+GGG | + | Chr3:43033255-43033274 | None:intergenic | 35.0% | |
| CAGCTATTATCTATGTTGGT+AGG | - | Chr3:43032009-43032028 | MsG0380013669.01.T01:CDS | 35.0% | |
| CTTCCATATTAGCAAAGAAG+TGG | - | Chr3:43032793-43032812 | MsG0380013669.01.T01:intron | 35.0% | |
| GAACAATACACCAAAATGGT+GGG | - | Chr3:43032509-43032528 | MsG0380013669.01.T01:CDS | 35.0% | |
| GATCAATGATTGCATCAACT+AGG | + | Chr3:43033474-43033493 | None:intergenic | 35.0% | |
| GATGGTCAATTTCCTTAATG+TGG | + | Chr3:43033326-43033345 | None:intergenic | 35.0% | |
| GCATCCAAATCAGAAAAACA+AGG | - | Chr3:43032877-43032896 | MsG0380013669.01.T01:CDS | 35.0% | |
| GTGTCTCAATTTCCACATTA+AGG | - | Chr3:43033311-43033330 | MsG0380013669.01.T01:intron | 35.0% | |
| GTGTTCAATTGAGCTATTGA+AGG | - | Chr3:43033531-43033550 | MsG0380013669.01.T01:intron | 35.0% | |
| GTTGATGCAATCATTGATCT+TGG | - | Chr3:43033475-43033494 | MsG0380013669.01.T01:intron | 35.0% | |
| TAAGACACACAAGAAACCAA+GGG | + | Chr3:43032353-43032372 | None:intergenic | 35.0% | |
| TAAGATCCAACGACATAATG+TGG | - | Chr3:43032683-43032702 | MsG0380013669.01.T01:intron | 35.0% | |
| TACCTTTGCAAATGAGAACT+CGG | - | Chr3:43033207-43033226 | MsG0380013669.01.T01:intron | 35.0% | |
| TATGATTAGTGACTTACCTG+AGG | - | Chr3:43032719-43032738 | MsG0380013669.01.T01:intron | 35.0% | |
| TGGAAATTGAGACACTAATC+TGG | + | Chr3:43033306-43033325 | None:intergenic | 35.0% | |
| TGTCTTACAAGAGTTGGAAT+TGG | - | Chr3:43033255-43033274 | MsG0380013669.01.T01:intron | 35.0% | |
| ! | ACCATCAGTTTTCTTATGTG+TGG | - | Chr3:43033340-43033359 | MsG0380013669.01.T01:intron | 35.0% |
| ! | GTTTTCGGTTGGATTGTTTA+GGG | - | Chr3:43032227-43032246 | MsG0380013669.01.T01:CDS | 35.0% |
| ! | TTCTTGCAGCATCTTTTGTA+GGG | + | Chr3:43032773-43032792 | None:intergenic | 35.0% |
| !! | ACAAAGGTGTCGTATATATG+CGG | + | Chr3:43032314-43032333 | None:intergenic | 35.0% |
| AAGAACAGCAGCAGAACAAA+GGG | + | Chr3:43032173-43032192 | None:intergenic | 40.0% | |
| AATGATTGCATCAACTAGGG+AGG | + | Chr3:43033470-43033489 | None:intergenic | 40.0% | |
| AATTTAGTGTGAAGTCTCGG+CGG | - | Chr3:43032137-43032156 | MsG0380013669.01.T01:CDS | 40.0% | |
| ACAAACCTACTCACGTTGAA+AGG | - | Chr3:43032936-43032955 | MsG0380013669.01.T01:CDS | 40.0% | |
| ACTACCAATGTCTTCAAGCT+AGG | + | Chr3:43033178-43033197 | None:intergenic | 40.0% | |
| ATATGCGGAACACCACAAAA+AGG | + | Chr3:43032299-43032318 | None:intergenic | 40.0% | |
| ATTGAACACTGAGCAGCATA+TGG | + | Chr3:43033520-43033539 | None:intergenic | 40.0% | |
| ATTGAGCTATTGAAGGGACT+TGG | - | Chr3:43033538-43033557 | MsG0380013669.01.T01:intron | 40.0% | |
| CATTTCGATCACCTAGTGAA+AGG | + | Chr3:43033054-43033073 | None:intergenic | 40.0% | |
| CGAACAATACACCAAAATGG+TGG | - | Chr3:43032508-43032527 | MsG0380013669.01.T01:CDS | 40.0% | |
| CTACCAATGTCTTCAAGCTA+GGG | + | Chr3:43033177-43033196 | None:intergenic | 40.0% | |
| CTAGGGAAACAAATACCACT+AGG | + | Chr3:43033160-43033179 | None:intergenic | 40.0% | |
| CTGCGAACAATACACCAAAA+TGG | - | Chr3:43032505-43032524 | MsG0380013669.01.T01:CDS | 40.0% | |
| GGCCAAGATATTGTAGTTTG+TGG | + | Chr3:43033033-43033052 | None:intergenic | 40.0% | |
| GTAAGACACACAAGAAACCA+AGG | + | Chr3:43032354-43032373 | None:intergenic | 40.0% | |
| GTCTTCCAACTAGATCTAAG+AGG | + | Chr3:43032910-43032929 | None:intergenic | 40.0% | |
| TCGAAAGCAACGAAACTATG+TGG | + | Chr3:43033091-43033110 | None:intergenic | 40.0% | |
| TCGTTGGATCTTATGCACAT+CGG | + | Chr3:43032676-43032695 | None:intergenic | 40.0% | |
| TGAAAGAGGAGCGATTACAA+AGG | + | Chr3:43032330-43032349 | None:intergenic | 40.0% | |
| TGTCATCCACATTATGTCGT+TGG | + | Chr3:43032692-43032711 | None:intergenic | 40.0% | |
| TTCACTCTACACATTCCTAG+TGG | - | Chr3:43033142-43033161 | MsG0380013669.01.T01:intron | 40.0% | |
| TTTCCCTAGCTTGAAGACAT+TGG | - | Chr3:43033171-43033190 | MsG0380013669.01.T01:intron | 40.0% | |
| ! | CAATATCTTGGCCTTTCACT+AGG | - | Chr3:43033040-43033059 | MsG0380013669.01.T01:intron | 40.0% |
| ! | GGTTTTCGGTTGGATTGTTT+AGG | - | Chr3:43032226-43032245 | MsG0380013669.01.T01:CDS | 40.0% |
| ! | GTTCTTGCAGCATCTTTTGT+AGG | + | Chr3:43032774-43032793 | None:intergenic | 40.0% |
| ! | TGTGGTGACAGGTTTTCTAT+CGG | - | Chr3:43032089-43032108 | MsG0380013669.01.T01:CDS | 40.0% |
| !! | TATTTTTGAGCAGGTAGCAC+AGG | - | Chr3:43032626-43032645 | MsG0380013669.01.T01:intron | 40.0% |
| !!! | TCTGTTTTTGCTGGTTTAGC+AGG | - | Chr3:43032066-43032085 | MsG0380013669.01.T01:CDS | 40.0% |
| !!! | TTTGAGCTTTTTTGGTGCTC+CGG | - | Chr3:43032198-43032217 | MsG0380013669.01.T01:CDS | 40.0% |
| AATGCATCAAAGCAGGTCTG+GGG | + | Chr3:43032541-43032560 | None:intergenic | 45.0% | |
| AGCCGAGTTCTCATTTGCAA+AGG | + | Chr3:43033212-43033231 | None:intergenic | 45.0% | |
| CAAGAAACCAAGGGTGAAAG+AGG | + | Chr3:43032344-43032363 | None:intergenic | 45.0% | |
| CAAGAACAGCAGCAGAACAA+AGG | + | Chr3:43032174-43032193 | None:intergenic | 45.0% | |
| CAATGCATCAAAGCAGGTCT+GGG | + | Chr3:43032542-43032561 | None:intergenic | 45.0% | |
| CAGACCTGCTTTGATGCATT+GGG | - | Chr3:43032541-43032560 | MsG0380013669.01.T01:CDS | 45.0% | |
| GCAGCATATGGTTCATCATG+TGG | + | Chr3:43033508-43033527 | None:intergenic | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | Chr3:43032431-43032450 | MsG0380013669.01.T01:CDS | 45.0% | |
| TCACCCAATGACATCAACCA+AGG | + | Chr3:43032115-43032134 | None:intergenic | 45.0% | |
| TCCAACCGAAAACCAAGTTC+CGG | + | Chr3:43032220-43032239 | None:intergenic | 45.0% | |
| TCGGTTGGATTGTTTAGGGA+CGG | - | Chr3:43032231-43032250 | MsG0380013669.01.T01:CDS | 45.0% | |
| TTGGATTGTTTAGGGACGGT+TGG | - | Chr3:43032235-43032254 | MsG0380013669.01.T01:CDS | 45.0% | |
| TTGTGTGTCTTACACAAGCG+AGG | - | Chr3:43032361-43032380 | MsG0380013669.01.T01:CDS | 45.0% | |
| ! | CGGCTCAACAACTTTTCTCT+GGG | - | Chr3:43033227-43033246 | MsG0380013669.01.T01:intron | 45.0% |
| ! | TCGGCTCAACAACTTTTCTC+TGG | - | Chr3:43033226-43033245 | MsG0380013669.01.T01:intron | 45.0% |
| !! | TGCACATCGGTTGATGAGAT+TGG | + | Chr3:43032663-43032682 | None:intergenic | 45.0% |
| !!! | CAGCTGCTTGTTTTGTGGTT+CGG | - | Chr3:43032039-43032058 | MsG0380013669.01.T01:CDS | 45.0% |
| !!! | GTTTAGGGACGGTTGGTTTT+AGG | - | Chr3:43032242-43032261 | MsG0380013669.01.T01:CDS | 45.0% |
| !!! | TGCTTGTTTTGTGGTTCGGA+CGG | - | Chr3:43032043-43032062 | MsG0380013669.01.T01:CDS | 45.0% |
| !!! | TTTTGCTGGTTTAGCAGGTG+TGG | - | Chr3:43032071-43032090 | MsG0380013669.01.T01:CDS | 45.0% |
| !!! | TTTTTTGGTGCTCCGGAACT+TGG | - | Chr3:43032205-43032224 | MsG0380013669.01.T01:CDS | 45.0% |
| AATCGCTCCTCTTTCACCCT+TGG | - | Chr3:43032334-43032353 | MsG0380013669.01.T01:CDS | 50.0% | |
| ACTAGGGAGGTCAGGTTAAC+AGG | + | Chr3:43033457-43033476 | None:intergenic | 50.0% | |
| ATACGAAGAAGAACGCCCTC+AGG | + | Chr3:43032738-43032757 | None:intergenic | 50.0% | |
| ATCAAAGCAGGTCTGGGGAA+GGG | + | Chr3:43032536-43032555 | None:intergenic | 50.0% | |
| CCAAGCCTTTCAACGTGAGT+AGG | + | Chr3:43032944-43032963 | None:intergenic | 50.0% | |
| CCAATGCATCAAAGCAGGTC+TGG | + | Chr3:43032543-43032562 | None:intergenic | 50.0% | |
| CCAGACCTGCTTTGATGCAT+TGG | - | Chr3:43032540-43032559 | MsG0380013669.01.T01:CDS | 50.0% | |
| CCTACTCACGTTGAAAGGCT+TGG | - | Chr3:43032941-43032960 | MsG0380013669.01.T01:CDS | 50.0% | |
| CTAGGGAGGTCAGGTTAACA+GGG | + | Chr3:43033456-43033475 | None:intergenic | 50.0% | |
| GTGCCCTGTCTTACAAGAGT+TGG | - | Chr3:43033249-43033268 | MsG0380013669.01.T01:intron | 50.0% | |
| TCACGTGACTGAAAGGTCAC+AGG | - | Chr3:43032438-43032457 | MsG0380013669.01.T01:CDS | 50.0% | |
| TTGCATCAACTAGGGAGGTC+AGG | + | Chr3:43033465-43033484 | None:intergenic | 50.0% | |
| ! | CGGCCTTGGTTGATGTCATT+GGG | - | Chr3:43032109-43032128 | MsG0380013669.01.T01:CDS | 50.0% |
| ! | GACAGGTTTTCTATCGGCCT+TGG | - | Chr3:43032095-43032114 | MsG0380013669.01.T01:CDS | 50.0% |
| ! | TCGGCCTTGGTTGATGTCAT+TGG | - | Chr3:43032108-43032127 | MsG0380013669.01.T01:CDS | 50.0% |
| !! | GTGCTCCGGAACTTGGTTTT+CGG | - | Chr3:43032212-43032231 | MsG0380013669.01.T01:CDS | 50.0% |
| !! | TCCGGAACTTGGTTTTCGGT+TGG | - | Chr3:43032216-43032235 | MsG0380013669.01.T01:CDS | 50.0% |
| !!! | GCTGTCAGCTGCTTGTTTTG+TGG | - | Chr3:43032034-43032053 | MsG0380013669.01.T01:CDS | 50.0% |
| !!! | TTCGGACGGTCTGTTTTTGC+TGG | - | Chr3:43032057-43032076 | MsG0380013669.01.T01:CDS | 50.0% |
| CATCAAAGCAGGTCTGGGGA+AGG | + | Chr3:43032537-43032556 | None:intergenic | 55.0% | |
| GCAGCCCAATGCATCAAAGC+AGG | + | Chr3:43032548-43032567 | None:intergenic | 55.0% | |
| GGTTTAGCAGGTGTGGTGAC+AGG | - | Chr3:43032078-43032097 | MsG0380013669.01.T01:CDS | 55.0% | |
| TGAGCAGGTAGCACAGGTCA+TGG | - | Chr3:43032632-43032651 | MsG0380013669.01.T01:intron | 55.0% | |
| CAGGTAGCACAGGTCATGGC+TGG | - | Chr3:43032636-43032655 | MsG0380013669.01.T01:intron | 60.0% | |
| ! | GGGGAAGGGTCCCACCATTT+TGG | + | Chr3:43032522-43032541 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 43031996 | 43033627 | 43031996 | ID=MsG0380013669.01;Name=MsG0380013669.01 |
| Chr3 | mRNA | 43031996 | 43033627 | 43031996 | ID=MsG0380013669.01.T01;Parent=MsG0380013669.01;Name=MsG0380013669.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0|0|1|1|1|3|0|300 |
| Chr3 | exon | 43033559 | 43033627 | 43033559 | ID=MsG0380013669.01.T01:exon:4424;Parent=MsG0380013669.01.T01 |
| Chr3 | exon | 43032800 | 43032984 | 43032800 | ID=MsG0380013669.01.T01:exon:4423;Parent=MsG0380013669.01.T01 |
| Chr3 | exon | 43031996 | 43032644 | 43031996 | ID=MsG0380013669.01.T01:exon:4422;Parent=MsG0380013669.01.T01 |
| Chr3 | CDS | 43033559 | 43033627 | 43033559 | ID=MsG0380013669.01.T01:cds;Parent=MsG0380013669.01.T01 |
| Chr3 | CDS | 43032800 | 43032984 | 43032800 | ID=MsG0380013669.01.T01:cds;Parent=MsG0380013669.01.T01 |
| Chr3 | CDS | 43031996 | 43032644 | 43031996 | ID=MsG0380013669.01.T01:cds;Parent=MsG0380013669.01.T01 |
| Gene Sequence |
| Protein sequence |
