AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010886.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010886.01.T01 MTR_2g093740 83.916 143 7 1 1 127 9 151 1.17e-78 244
MsG0280010886.01.T01 MTR_2g093740 83.916 143 7 1 1 127 9 151 2.44e-78 245
MsG0280010886.01.T01 MTR_2g093740 83.916 143 7 1 1 127 139 281 2.56e-78 246
MsG0280010886.01.T01 MTR_2g093740 83.916 143 7 1 1 127 139 281 1.09e-77 245
MsG0280010886.01.T01 MTR_2g093740 83.916 143 7 1 1 127 139 281 2.11e-77 245
MsG0280010886.01.T01 MTR_2g093740 76.923 156 7 1 1 127 139 294 1.40e-76 241
MsG0280010886.01.T01 MTR_2g093740 76.923 156 7 1 1 127 9 164 1.67e-76 239
MsG0280010886.01.T01 MTR_2g093740 76.923 156 7 1 1 127 9 164 2.78e-76 240
MsG0280010886.01.T01 MTR_2g093740 76.923 156 7 1 1 127 139 294 7.01e-76 240
MsG0280010886.01.T01 MTR_2g093740 76.923 156 7 1 1 127 139 294 1.10e-75 241
MsG0280010886.01.T01 MTR_4g060460 78.862 123 10 1 21 127 157 279 1.74e-59 197
MsG0280010886.01.T01 MTR_4g060460 78.862 123 10 1 21 127 157 279 1.75e-59 197
MsG0280010886.01.T01 MTR_4g088210 77.358 106 8 1 28 117 146 251 1.74e-48 166
MsG0280010886.01.T01 MTR_4g088210 77.358 106 8 1 28 117 146 251 1.89e-48 166
MsG0280010886.01.T01 MTR_2g014770 75.472 106 10 1 28 117 156 261 6.29e-48 164
MsG0280010886.01.T01 MTR_2g014770 75.472 106 10 1 28 117 156 261 1.23e-47 164
MsG0280010886.01.T01 MTR_2g005240 60.656 122 32 1 22 127 117 238 1.18e-44 155
MsG0280010886.01.T01 MTR_8g100050 62.069 116 28 1 28 127 160 275 1.96e-44 155
MsG0280010886.01.T01 MTR_8g100050 62.069 116 28 1 28 127 160 275 2.67e-44 155
MsG0280010886.01.T01 MTR_2g018690 57.143 126 38 1 21 130 118 243 1.91e-43 153
MsG0280010886.01.T01 MTR_5g076270 57.600 125 37 1 22 130 120 244 2.85e-43 152
MsG0280010886.01.T01 MTR_3g064050 58.400 125 36 1 22 130 122 246 4.14e-43 152
MsG0280010886.01.T01 MTR_8g027440 60.345 116 30 1 28 127 129 244 4.91e-43 151
MsG0280010886.01.T01 MTR_4g021580 64.151 106 22 1 28 117 119 224 1.85e-41 146
MsG0280010886.01.T01 MTR_4g021580 64.151 106 22 1 28 117 119 224 1.97e-41 146
MsG0280010886.01.T01 MTR_8g079492 55.285 123 39 1 24 130 38 160 8.52e-41 145
MsG0280010886.01.T01 MTR_8g079492 54.839 124 40 1 23 130 119 242 1.16e-40 145
MsG0280010886.01.T01 MTR_8g079492 54.839 124 40 1 23 130 119 242 1.17e-40 145
MsG0280010886.01.T01 MTR_7g062540 54.098 122 40 1 22 127 108 229 6.23e-40 142
MsG0280010886.01.T01 MTR_1g024025 53.125 128 44 1 19 130 135 262 1.86e-38 139
MsG0280010886.01.T01 MTR_8g101360 62.037 108 24 2 30 120 135 242 2.61e-35 129
MsG0280010886.01.T01 MTR_4g124900 54.839 124 36 2 15 122 115 234 2.76e-35 129
MsG0280010886.01.T01 MTR_4g124900 54.839 124 36 2 15 122 115 234 2.77e-35 129
MsG0280010886.01.T01 MTR_2g043250 54.167 120 39 1 19 122 115 234 3.77e-35 129
MsG0280010886.01.T01 MTR_2g094570 51.145 131 45 3 3 117 84 211 1.70e-32 121
MsG0280010886.01.T01 MTR_2g094570 51.145 131 45 3 3 117 84 211 1.93e-32 121
MsG0280010886.01.T01 MTR_2g094570 51.145 131 45 3 3 117 140 267 2.18e-32 121
MsG0280010886.01.T01 MTR_4g058930 57.692 104 28 1 30 117 109 212 4.13e-32 120
MsG0280010886.01.T01 MTR_4g058930 57.692 104 28 1 30 117 109 212 5.17e-32 120
MsG0280010886.01.T01 MTR_1g094960 53.846 104 32 1 30 117 118 221 8.39e-31 116
MsG0280010886.01.T01 MTR_1g064430 53.846 104 32 1 30 117 142 245 9.72e-31 116
MsG0280010886.01.T01 MTR_1g064430 53.846 104 32 1 30 117 129 232 9.88e-31 116
MsG0280010886.01.T01 MTR_7g101280 48.780 123 47 1 14 120 115 237 1.49e-30 116
MsG0280010886.01.T01 MTR_0041s0110 48.780 123 47 1 14 120 115 237 1.49e-30 116
MsG0280010886.01.T01 MTR_7g101275 49.593 123 46 1 14 120 76 198 2.07e-30 114
MsG0280010886.01.T01 MTR_8g446900 49.123 114 40 3 20 117 54 165 9.45e-27 103
MsG0280010886.01.T01 MTR_3g073420 43.200 125 50 2 30 133 117 241 1.35e-26 104
MsG0280010886.01.T01 MTR_5g040880 40.157 127 56 3 7 117 94 216 4.69e-24 97.4
MsG0280010886.01.T01 MTR_5g061220 43.564 101 41 1 30 114 118 218 1.63e-23 95.9
MsG0280010886.01.T01 MTR_2g024430 44.231 104 40 2 32 117 124 227 7.88e-23 94.0
MsG0280010886.01.T01 MTR_0041s0120 46.078 102 39 1 14 99 76 177 1.16e-20 87.4
MsG0280010886.01.T01 MTR_5g040740 40.777 103 41 2 32 114 115 217 2.15e-19 84.0
MsG0280010886.01.T01 MTR_1g058210 35.644 101 49 1 30 114 113 213 2.20e-17 78.2
MsG0280010886.01.T01 MTR_5g074840 35.294 119 62 2 12 130 9 112 1.27e-16 72.8
MsG0280010886.01.T01 MTR_5g082140 40.698 86 35 1 32 101 116 201 2.33e-15 72.4
MsG0280010886.01.T01 MTR_5g062970 35.714 98 47 1 30 111 138 235 4.74e-15 70.1
MsG0280010886.01.T01 MTR_2g006270 36.275 102 48 2 30 114 116 217 6.33e-14 68.6
MsG0280010886.01.T01 MTR_2g006380 39.024 82 46 2 51 128 160 241 2.24e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010886.01.T01 AT5G60450 67.949 156 25 3 12 142 133 288 4.04e-60 198
MsG0280010886.01.T01 AT5G60450 67.949 156 25 3 12 142 157 312 6.24e-60 198
MsG0280010886.01.T01 AT2G33860 69.811 106 16 1 28 117 157 262 7.80e-45 155
MsG0280010886.01.T01 AT2G33860 69.524 105 16 1 29 117 1 105 1.24e-44 152
MsG0280010886.01.T01 AT3G61830 54.286 140 44 2 4 127 55 190 1.85e-44 153
MsG0280010886.01.T01 AT5G62000 59.016 122 34 1 22 127 156 277 2.51e-44 155
MsG0280010886.01.T01 AT5G62000 59.016 122 34 1 22 127 156 277 2.51e-44 155
MsG0280010886.01.T01 AT5G62000 59.016 122 34 1 22 127 156 277 2.51e-44 155
MsG0280010886.01.T01 AT5G62000 59.016 122 34 1 22 127 156 277 2.51e-44 155
MsG0280010886.01.T01 AT5G62000 59.016 122 34 1 22 127 156 277 3.12e-44 155
MsG0280010886.01.T01 AT3G61830 54.286 140 44 2 4 127 106 241 3.30e-44 153
MsG0280010886.01.T01 AT1G59750 55.319 141 43 2 3 127 101 237 5.30e-44 153
MsG0280010886.01.T01 AT1G59750 55.319 141 43 2 3 127 101 237 6.07e-44 153
MsG0280010886.01.T01 AT1G59750 55.319 141 43 2 3 127 101 237 6.33e-44 153
MsG0280010886.01.T01 AT1G59750 55.319 141 43 2 3 127 101 237 6.33e-44 153
MsG0280010886.01.T01 AT5G37020 56.800 125 38 1 22 130 23 147 2.87e-42 149
MsG0280010886.01.T01 AT5G37020 56.800 125 38 1 22 130 118 242 3.46e-42 149
MsG0280010886.01.T01 AT5G37020 56.800 125 38 1 22 130 118 242 4.34e-42 149
MsG0280010886.01.T01 AT2G46530 54.918 122 39 1 22 127 29 150 3.99e-41 144
MsG0280010886.01.T01 AT2G46530 54.918 122 39 1 22 127 116 237 8.10e-41 144
MsG0280010886.01.T01 AT1G30330 55.200 125 40 1 22 130 119 243 1.07e-40 145
MsG0280010886.01.T01 AT1G30330 55.200 125 40 1 22 130 121 245 1.10e-40 145
MsG0280010886.01.T01 AT1G30330 55.200 125 40 1 22 130 121 245 1.10e-40 145
MsG0280010886.01.T01 AT2G46530 54.918 122 39 1 22 127 137 258 1.12e-40 144
MsG0280010886.01.T01 AT4G23980 62.500 104 23 1 28 115 114 217 1.78e-39 140
MsG0280010886.01.T01 AT4G23980 62.500 104 23 1 28 115 114 217 1.80e-39 140
MsG0280010886.01.T01 AT1G19850 52.419 124 43 1 23 130 151 274 5.82e-37 134
MsG0280010886.01.T01 AT1G19850 52.419 124 43 1 23 130 140 263 6.78e-37 134
MsG0280010886.01.T01 AT1G34310 52.991 117 39 1 30 130 126 242 9.42e-36 130
MsG0280010886.01.T01 AT1G19220 58.772 114 27 2 20 117 120 229 1.03e-35 131
MsG0280010886.01.T01 AT1G35540 51.282 117 41 1 30 130 126 242 4.60e-35 128
MsG0280010886.01.T01 AT1G35240 52.137 117 40 1 30 130 126 242 5.68e-35 128
MsG0280010886.01.T01 AT5G20730 57.143 112 32 1 27 122 124 235 1.22e-34 128
MsG0280010886.01.T01 AT5G20730 57.143 112 32 1 27 122 124 235 1.25e-34 128
MsG0280010886.01.T01 AT5G20730 57.143 112 32 1 27 122 124 235 1.37e-34 127
MsG0280010886.01.T01 AT1G34410 49.573 117 43 1 30 130 126 242 3.44e-33 123
MsG0280010886.01.T01 AT1G35520 50.427 117 42 1 30 130 126 242 8.77e-33 122
MsG0280010886.01.T01 AT2G28350 51.695 118 39 2 16 117 103 218 8.09e-32 119
MsG0280010886.01.T01 AT2G28350 51.695 118 39 2 16 117 103 218 8.10e-32 119
MsG0280010886.01.T01 AT4G30080 47.692 130 43 3 4 117 103 223 1.48e-31 119
MsG0280010886.01.T01 AT1G34390 54.902 102 28 2 30 115 126 225 1.08e-29 113
MsG0280010886.01.T01 AT1G34170 44.531 128 50 3 18 127 115 239 6.44e-29 110
MsG0280010886.01.T01 AT1G34170 44.531 128 50 3 18 127 115 239 6.68e-29 110
MsG0280010886.01.T01 AT1G34170 44.531 128 50 3 18 127 115 239 9.87e-29 110
MsG0280010886.01.T01 AT1G77850 43.478 115 47 2 16 114 107 219 5.12e-24 97.4
MsG0280010886.01.T01 AT1G77850 43.478 115 47 2 16 114 107 219 6.03e-24 97.4
MsG0280010886.01.T01 AT1G43950 49.000 100 32 3 30 113 126 222 4.61e-23 91.3

Find 162 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATAGCTGACCTTCTTTC+TGG 0.139715 2:+76397820 None:intergenic
GTAAATCCTTGTAGACTATT+TGG 0.158429 2:-76396555 MsG0280010886.01.T01:three_prime_UTR
AGCCAAAAGAATCTTGTTTC+TGG 0.202166 2:-76398353 MsG0280010886.01.T01:CDS
AACATTCTCTAGTTGGAAAT+TGG 0.212031 2:+76396738 None:intergenic
CACTCTCTTGTGTATATATA+TGG 0.236414 2:+76395748 None:intergenic
GGAAATGAAGTTGGAATATC+AGG 0.262560 2:-76396681 MsG0280010886.01.T01:three_prime_UTR
AGCTGGAGACAGTGGGTTTA+TGG 0.268758 2:-76397218 MsG0280010886.01.T01:three_prime_UTR
CCTGCAGCTTCTGCTTGTTT+CGG 0.298110 2:+76396649 None:intergenic
TTTGACTTGGGCCATTTATA+GGG 0.298149 2:+76397692 None:intergenic
CCCCAGAAACAAGATTCTTT+TGG 0.320379 2:+76398351 None:intergenic
AGTGAACTAGAGAGACTATT+TGG 0.331029 2:-76396297 MsG0280010886.01.T01:three_prime_UTR
CTTCTAGTTATGCAGACTTC+AGG 0.331684 2:-76397006 MsG0280010886.01.T01:three_prime_UTR
GTGATTTGGATCCCTATAAA+TGG 0.335220 2:-76397703 MsG0280010886.01.T01:three_prime_UTR
CAAACTAACTTTCACTCATT+AGG 0.346323 2:-76396847 MsG0280010886.01.T01:three_prime_UTR
TAGTTGGAAATTGGTTGGTT+TGG 0.350673 2:+76396747 None:intergenic
CTAATGAGTGAAAGTTAGTT+TGG 0.352623 2:+76396848 None:intergenic
TGGTTACCAACAATTGATTC+AGG 0.358579 2:+76398136 None:intergenic
TTCACCTACCTCGATAAATA+TGG 0.367329 2:+76398498 None:intergenic
CTGCAGTGAGTTCTGTGTTA+TGG 0.372350 2:-76395781 MsG0280010886.01.T01:intron
ATTCAAAATGAAATTTGAAA+TGG 0.374517 2:-76397851 MsG0280010886.01.T01:exon
CACAAACAAGGGAGCTTAGT+TGG 0.377475 2:-76396367 MsG0280010886.01.T01:three_prime_UTR
TTGATCTAAACCTTAACTCT+TGG 0.379579 2:-76396915 MsG0280010886.01.T01:three_prime_UTR
TATATTTGTGTACTAACATT+TGG 0.381100 2:+76396885 None:intergenic
ATAAATGGCCCAAGTCAAAA+TGG 0.382489 2:-76397688 MsG0280010886.01.T01:three_prime_UTR
GCCAAAAGAATCTTGTTTCT+GGG 0.385570 2:-76398352 MsG0280010886.01.T01:CDS
GGGACGCAGTGCTCTTTCTA+AGG 0.386238 2:-76398331 MsG0280010886.01.T01:intron
TGATCTAAACCTTAACTCTT+GGG 0.391011 2:-76396914 MsG0280010886.01.T01:three_prime_UTR
AGAGTGGAGAAGATGACAAT+TGG 0.398132 2:-76395731 MsG0280010886.01.T01:three_prime_UTR
ATGTGAGAAGCTAACTTTGT+AGG 0.405019 2:+76398906 None:intergenic
GAGTGGAGAAGATGACAATT+GGG 0.406764 2:-76395730 MsG0280010886.01.T01:three_prime_UTR
TGACAGTGAAAATGACATTA+TGG 0.407283 2:-76396224 MsG0280010886.01.T01:three_prime_UTR
ATGTTGTAGAATACAGATAA+TGG 0.407466 2:+76397778 None:intergenic
TCAGTTAGCAGGGATGTGTT+TGG 0.410443 2:-76398982 None:intergenic
CTGAAGTCTGCATAACTAGA+AGG 0.412536 2:+76397007 None:intergenic
TTGGTAAGGCACAACGAAAT+CGG 0.417321 2:+76397917 None:intergenic
AGGAAACGAACCGGTTTCCT+AGG 0.418540 2:-76396986 MsG0280010886.01.T01:three_prime_UTR
CATACTAATCTTGCATCAAA+TGG 0.420961 2:-76397069 MsG0280010886.01.T01:three_prime_UTR
GGTTTAGAAGCAGGTGGAGA+GGG 0.421608 2:-76398942 MsG0280010886.01.T01:CDS
GATTCAGGAAGACCGTTTCT+CGG 0.422054 2:+76398151 None:intergenic
CCACCTGCTTCTAAACCTTC+CGG 0.425174 2:+76398948 None:intergenic
TTCGACAGATTGAATGTTCA+AGG 0.425642 2:+76397377 None:intergenic
TGATGATAACCAGAGTTGTT+TGG 0.426706 2:-76395699 MsG0280010886.01.T01:three_prime_UTR
GTCAAAATGGAGATGCTTGA+TGG 0.432058 2:-76397675 MsG0280010886.01.T01:intron
AAAATGACATTATGGTTGTT+GGG 0.432406 2:-76396216 MsG0280010886.01.T01:three_prime_UTR
AGGATTCTCCATCCTTTGTC+AGG 0.432653 2:+76396252 None:intergenic
TATACTCCTTCAGCTCAGAT+AGG 0.438938 2:-76396710 MsG0280010886.01.T01:three_prime_UTR
GTTAGTTTGGTTCATTATGC+AGG 0.446653 2:+76396861 None:intergenic
TTAGATCAACCTTTCCTGCC+AGG 0.450136 2:+76396929 None:intergenic
ATTTCTGCTGCTGCGTCTCT+AGG 0.450210 2:-76396621 MsG0280010886.01.T01:three_prime_UTR
AGTGACTGGAATGAGTGATT+TGG 0.450736 2:-76397717 MsG0280010886.01.T01:three_prime_UTR
TAAATGAAACATTCTCTAGT+TGG 0.453153 2:+76396731 None:intergenic
ATCAAGATAGAGTCTCTCCT+TGG 0.455503 2:-76397428 MsG0280010886.01.T01:three_prime_UTR
GGTCTTCCTGAATCAATTGT+TGG 0.457519 2:-76398142 MsG0280010886.01.T01:intron
GCCTCTGATACCAGCACTCA+TGG 0.459057 2:-76398864 MsG0280010886.01.T01:CDS
GAAGCAGGTGGAGAGGGAGA+TGG 0.465289 2:-76398936 MsG0280010886.01.T01:CDS
ACAAACAAGGGAGCTTAGTT+GGG 0.466619 2:-76396366 MsG0280010886.01.T01:three_prime_UTR
AGGTGCATTGGAAATGAAGT+TGG 0.471673 2:-76396690 MsG0280010886.01.T01:three_prime_UTR
GGTGGTTTCCGCCGCCGATA+AGG 0.472069 2:+76396527 None:intergenic
GTAGTGAGCAGATGCCTCCT+TGG 0.475837 2:+76398395 None:intergenic
TTCTCTAGTTGGAAATTGGT+TGG 0.476906 2:+76396742 None:intergenic
ACTTTGTGTATATCACCATA+TGG 0.477775 2:+76396796 None:intergenic
GAAAATGACATTATGGTTGT+TGG 0.484036 2:-76396217 MsG0280010886.01.T01:three_prime_UTR
GATTAGTATGTCTTAGAGAA+TGG 0.484229 2:+76397082 None:intergenic
CTTGCAAGACCCTAGGAAAC+CGG 0.485163 2:+76396976 None:intergenic
ATTGTATATTACATATGCGT+TGG 0.485323 2:+76396401 None:intergenic
TTTGAAGCCTCCACAATCAA+TGG 0.488117 2:+76395668 None:intergenic
TTCAGCTCAGATAGGTGCAT+TGG 0.493379 2:-76396702 MsG0280010886.01.T01:three_prime_UTR
TTTAGTAAAACTTACTGCCA+TGG 0.494050 2:+76396187 None:intergenic
AGGAGGCATCTGCTCACTAC+TGG 0.505121 2:-76398392 MsG0280010886.01.T01:CDS
CATACCAGTGATAAGGTGAC+TGG 0.506398 2:+76397314 None:intergenic
GGCATCTGCTCACTACTGGC+TGG 0.509364 2:-76398388 MsG0280010886.01.T01:CDS
TATATCACCATATGGAAAAG+AGG 0.512064 2:+76396804 None:intergenic
TTGGATTCATACCAGTGATA+AGG 0.513127 2:+76397307 None:intergenic
CTGTGATTACACAGGTCCGA+TGG 0.513447 2:-76397472 MsG0280010886.01.T01:intron
ATCTTGTCCCTATGGTCAGT+GGG 0.513478 2:+76397872 None:intergenic
GAGCCGGAAGGTTTAGAAGC+AGG 0.515631 2:-76398951 MsG0280010886.01.T01:CDS
TCTTGACCTTGCAAGAACCT+TGG 0.517522 2:+76397171 None:intergenic
AATCTTGTCCCTATGGTCAG+TGG 0.518063 2:+76397871 None:intergenic
ATTGAGCAGCTACAATGATC+TGG 0.518918 2:-76396322 MsG0280010886.01.T01:three_prime_UTR
TGAAAACGGAGAGTTAAGAT+TGG 0.519467 2:-76398194 MsG0280010886.01.T01:CDS
AGAGCTGCTCGACCGAGAAA+CGG 0.520377 2:-76398163 MsG0280010886.01.T01:CDS
TAAGAGATCCTGACAAAGGA+TGG 0.521003 2:-76396260 MsG0280010886.01.T01:three_prime_UTR
GCAGACTTCAGGAAACGAAC+CGG 0.522223 2:-76396995 MsG0280010886.01.T01:three_prime_UTR
TCTTGACCTTGCAAGACCCT+AGG 0.523482 2:+76396969 None:intergenic
ATCAGAACCCACTGACCATA+GGG 0.524635 2:-76397879 MsG0280010886.01.T01:CDS
TGTAGTAGCGGTATAGTGAC+TGG 0.531703 2:-76397731 MsG0280010886.01.T01:three_prime_UTR
TCTCTATGTAGGGGTGAAAA+CGG 0.532577 2:-76398208 MsG0280010886.01.T01:intron
TCAAGATAGAGTCTCTCCTT+GGG 0.533378 2:-76397427 MsG0280010886.01.T01:three_prime_UTR
ATTGAGATCCCTGGCAGGAA+AGG 0.534632 2:-76396938 MsG0280010886.01.T01:three_prime_UTR
TGAATGAAGGTTCACAAACA+AGG 0.534840 2:-76396379 MsG0280010886.01.T01:three_prime_UTR
ATGTAATATACAATGAATGA+AGG 0.536875 2:-76396392 MsG0280010886.01.T01:three_prime_UTR
CATCAGAACCCACTGACCAT+AGG 0.541073 2:-76397880 MsG0280010886.01.T01:CDS
CCGAAACAAGCAGAAGCTGC+AGG 0.542656 2:-76396649 MsG0280010886.01.T01:three_prime_UTR
TAGATCAACCTTTCCTGCCA+GGG 0.544208 2:+76396930 None:intergenic
AAATATACCATTGAGATCCC+TGG 0.545863 2:-76396947 MsG0280010886.01.T01:three_prime_UTR
TACACAGGTCCGATGGGATG+AGG 0.546892 2:-76397465 MsG0280010886.01.T01:intron
TATGGTGATATACACAAAGT+TGG 0.548146 2:-76396793 MsG0280010886.01.T01:three_prime_UTR
GGTTCTGTAGATTTGTGAGG+TGG 0.548263 2:+76396509 None:intergenic
GAAAACGGAGAGTTAAGATT+GGG 0.548310 2:-76398193 MsG0280010886.01.T01:CDS
TGGATGAATCTCCAGAAAGA+AGG 0.548781 2:-76397831 MsG0280010886.01.T01:three_prime_UTR
GAGAGACTATTTGGCATGGA+AGG 0.550692 2:-76396288 MsG0280010886.01.T01:three_prime_UTR
CGTCTCTAGGTGCAAACTTG+AGG 0.551143 2:-76396608 MsG0280010886.01.T01:three_prime_UTR
GCTCAATCTTGAGAGATCAA+TGG 0.551608 2:+76396338 None:intergenic
GGAACATACACCATTGATTG+TGG 0.553625 2:-76395678 MsG0280010886.01.T01:three_prime_UTR
GGAAACGAACCGGTTTCCTA+GGG 0.563227 2:-76396985 MsG0280010886.01.T01:three_prime_UTR
AGGCTGAACCCTCGTAAACT+CGG 0.566036 2:+76397027 None:intergenic
GAAAATCCAAATAGTCTACA+AGG 0.566058 2:+76396549 None:intergenic
CACCCCAGTCACCTTATCAC+TGG 0.567554 2:-76397318 MsG0280010886.01.T01:intron
GCTTCAAAGTCTTCCTCAGT+GGG 0.567657 2:-76395653 MsG0280010886.01.T01:three_prime_UTR
GCAGGTTCTGTAGATTTGTG+AGG 0.569493 2:+76396506 None:intergenic
CCAAAAGAATCTTGTTTCTG+GGG 0.569533 2:-76398351 MsG0280010886.01.T01:CDS
GTGTATGTTCCAAACAACTC+TGG 0.578457 2:+76395690 None:intergenic
TGGTTGTTGGGGATGATCCA+TGG 0.581281 2:-76396204 MsG0280010886.01.T01:three_prime_UTR
AGGTTTAGAAGCAGGTGGAG+AGG 0.583311 2:-76398943 MsG0280010886.01.T01:CDS
GTGTTTGGATGACAAAGAGC+CGG 0.584309 2:-76398967 MsG0280010886.01.T01:CDS
TTTCCTGCCAGGGATCTCAA+TGG 0.586540 2:+76396940 None:intergenic
ATGTCTTGCAGTTGTAGTAG+CGG 0.591023 2:-76397743 MsG0280010886.01.T01:three_prime_UTR
ATACCATTGAGATCCCTGGC+AGG 0.591227 2:-76396943 MsG0280010886.01.T01:three_prime_UTR
TGTGATTACACAGGTCCGAT+GGG 0.593596 2:-76397471 MsG0280010886.01.T01:intron
TTCATCGCAGCTGGAGACAG+TGG 0.594260 2:-76397226 MsG0280010886.01.T01:intron
CAGATTGAATGTTCAAGGGA+GGG 0.595908 2:+76397382 None:intergenic
ATTTCCACTCCACACCATGC+AGG 0.596067 2:+76398525 None:intergenic
TCATCGCAGCTGGAGACAGT+GGG 0.597361 2:-76397225 MsG0280010886.01.T01:intron
AATGCACCTATCTGAGCTGA+AGG 0.597701 2:+76396704 None:intergenic
CGGTTTCCTAGGGTCTTGCA+AGG 0.598452 2:-76396975 MsG0280010886.01.T01:three_prime_UTR
ATTACTTCTCCGAGTTTACG+AGG 0.599997 2:-76397036 MsG0280010886.01.T01:three_prime_UTR
CATATATATACACAAGAGAG+TGG 0.600875 2:-76395747 MsG0280010886.01.T01:three_prime_UTR
TTGAACATTCAATCTGTCGA+AGG 0.601004 2:-76397375 MsG0280010886.01.T01:three_prime_UTR
TCCATGAGTGCTGGTATCAG+AGG 0.602998 2:+76398863 None:intergenic
GATATACACAAAGTTGGTCA+AGG 0.608483 2:-76396787 MsG0280010886.01.T01:three_prime_UTR
GATCTAAACCTTAACTCTTG+GGG 0.609198 2:-76396913 MsG0280010886.01.T01:three_prime_UTR
TCGACAGATTGAATGTTCAA+GGG 0.610016 2:+76397378 None:intergenic
AAATGACATTATGGTTGTTG+GGG 0.611574 2:-76396215 MsG0280010886.01.T01:three_prime_UTR
TTTGCAACAAGCTCTTGAGA+GGG 0.613596 2:+76398551 None:intergenic
TATGCGTTGGCAAATTGTCA+AGG 0.615243 2:+76396414 None:intergenic
ACAGATTGAATGTTCAAGGG+AGG 0.616194 2:+76397381 None:intergenic
ATACCAGTGATAAGGTGACT+GGG 0.617766 2:+76397315 None:intergenic
GGCTTCAAAGTCTTCCTCAG+TGG 0.617874 2:-76395654 MsG0280010886.01.T01:three_prime_UTR
GCTCAATATCCTCATCCCAT+CGG 0.625794 2:+76397456 None:intergenic
CTTTGTCAGGTCAGCCAAGG+AGG 0.625815 2:-76398409 MsG0280010886.01.T01:intron
GATCGACCAAGGTTCTTGCA+AGG 0.626281 2:-76397177 MsG0280010886.01.T01:three_prime_UTR
CCGGAAGGTTTAGAAGCAGG+TGG 0.627126 2:-76398948 MsG0280010886.01.T01:CDS
GAATGAAGGTTCACAAACAA+GGG 0.629502 2:-76396378 MsG0280010886.01.T01:three_prime_UTR
AATCTTTGTCAGGTCAGCCA+AGG 0.629630 2:-76398412 MsG0280010886.01.T01:intron
ACTAGAGAGACTATTTGGCA+TGG 0.631155 2:-76396292 MsG0280010886.01.T01:three_prime_UTR
AAGGGAGGGAGAGAAGTAGA+CGG 0.635894 2:+76397396 None:intergenic
TGCAAAAGACCTGCATGGTG+TGG 0.639765 2:-76398534 MsG0280010886.01.T01:CDS
TTGGATGACAAAGAGCCGGA+AGG 0.641394 2:-76398963 MsG0280010886.01.T01:CDS
GATTATATTGCATAGAGACA+AGG 0.642392 2:+76395582 None:intergenic
AAGACCTGCATGGTGTGGAG+TGG 0.642527 2:-76398529 MsG0280010886.01.T01:CDS
ACATACACCATTGATTGTGG+AGG 0.643124 2:-76395675 MsG0280010886.01.T01:three_prime_UTR
CTTCTAAGAGATCCTGACAA+AGG 0.649192 2:-76396264 MsG0280010886.01.T01:three_prime_UTR
ATTCATATCACAATATAACT+CGG 0.659367 2:+76396448 None:intergenic
AAATTTCGCCATATTTATCG+AGG 0.663380 2:-76398506 MsG0280010886.01.T01:intron
GTAGACGGATCGATCTCCCA+AGG 0.663808 2:+76397411 None:intergenic
TGCTAAAAGAAGTTGCACGA+AGG 0.664910 2:-76396486 MsG0280010886.01.T01:three_prime_UTR
TTACTTCTCCGAGTTTACGA+GGG 0.666353 2:-76397035 MsG0280010886.01.T01:three_prime_UTR
TACCAGTGATAAGGTGACTG+GGG 0.692136 2:+76397316 None:intergenic
TGAGTCTATAAGATCGACCA+AGG 0.696986 2:-76397188 MsG0280010886.01.T01:three_prime_UTR
CTTGTTGCAAAAGACCTGCA+TGG 0.711702 2:-76398539 MsG0280010886.01.T01:CDS
AAGAATCTGCTGTCCCACTG+AGG 0.716343 2:+76395640 None:intergenic
TCTGATACCAGCACTCATGG+AGG 0.726139 2:-76398861 MsG0280010886.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTATACTGATTTAA+TGG + Chr2:76398376-76398395 None:intergenic 10.0%
!! AAACATATTAAATATACATG+TGG + Chr2:76396524-76396543 None:intergenic 15.0%
!! AACATATTAAATATACATGT+GGG + Chr2:76396523-76396542 None:intergenic 15.0%
!! ATTCAAAATGAAATTTGAAA+TGG - Chr2:76396639-76396658 MsG0280010886.01.T01:three_prime_UTR 15.0%
!! TATTAATGTAATGTTTAGAA+AGG + Chr2:76396955-76396974 None:intergenic 15.0%
!! AACCAATGATATTTATTCAA+TGG + Chr2:76398518-76398537 None:intergenic 20.0%
!! AACCATTGAATAAATATCAT+TGG - Chr2:76398513-76398532 MsG0280010886.01.T01:CDS 20.0%
!! ACATTGAAATATATATCACA+AGG + Chr2:76398594-76398613 None:intergenic 20.0%
!! ATGTAATATACAATGAATGA+AGG - Chr2:76398098-76398117 MsG0280010886.01.T01:intron 20.0%
!! ATTCATATCACAATATAACT+CGG + Chr2:76398045-76398064 None:intergenic 20.0%
!! TATATTTGTGTACTAACATT+TGG + Chr2:76397608-76397627 None:intergenic 20.0%
!! TATTTCAAATATCGATCTAA+TGG - Chr2:76398391-76398410 MsG0280010886.01.T01:CDS 20.0%
!! TGTGATATATATTTCAATGT+CGG - Chr2:76398594-76398613 MsG0280010886.01.T01:intron 20.0%
!!! AGTTTTATGTCACTATATTA+TGG - Chr2:76397349-76397368 MsG0280010886.01.T01:three_prime_UTR 20.0%
!!! TTCTTTTGTCTATTTGTAAA+TGG - Chr2:76398331-76398350 MsG0280010886.01.T01:intron 20.0%
! AAAATGACATTATGGTTGTT+GGG - Chr2:76398274-76398293 MsG0280010886.01.T01:intron 25.0%
! ATAGGATAGAATGATTCAAT+AGG + Chr2:76398635-76398654 None:intergenic 25.0%
! ATGTTGTAGAATACAGATAA+TGG + Chr2:76396715-76396734 None:intergenic 25.0%
! ATTGTATATTACATATGCGT+TGG + Chr2:76398092-76398111 None:intergenic 25.0%
! CTATCCTATGTAACATATTA+TGG - Chr2:76398646-76398665 MsG0280010886.01.T01:intron 25.0%
! GTGATATATATTTCAATGTC+GGG - Chr2:76398595-76398614 MsG0280010886.01.T01:intron 25.0%
! TAAATGAAACATTCTCTAGT+TGG + Chr2:76397762-76397781 None:intergenic 25.0%
! TCATCCATAATATGTTACAT+AGG + Chr2:76398653-76398672 None:intergenic 25.0%
! TGAAACAGAAATATTGTGAT+TGG - Chr2:76396011-76396030 MsG0280010886.01.T01:intron 25.0%
! TTACGATCGTATTATACATT+TGG - Chr2:76396880-76396899 MsG0280010886.01.T01:three_prime_UTR 25.0%
! TTATTAGTTATCTCGTACAT+TGG + Chr2:76397205-76397224 None:intergenic 25.0%
!! ACTATTTGGATTTTCCTTAT+CGG - Chr2:76397949-76397968 MsG0280010886.01.T01:intron 25.0%
!! CTTATTTGAGTTTAATCTAC+TGG - Chr2:76395733-76395752 MsG0280010886.01.T01:three_prime_UTR 25.0%
!!! CTGTTTATTTTCACTTCTTT+AGG - Chr2:76395900-76395919 MsG0280010886.01.T01:intron 25.0%
!!! TTTCTTGTTTTGCAAAATGT+TGG - Chr2:76396480-76396499 MsG0280010886.01.T01:three_prime_UTR 25.0%
AAATGACATTATGGTTGTTG+GGG - Chr2:76398275-76398294 MsG0280010886.01.T01:intron 30.0%
AAATTTCGCCATATTTATCG+AGG - Chr2:76395984-76396003 MsG0280010886.01.T01:intron 30.0%
AACATTCTCTAGTTGGAAAT+TGG + Chr2:76397755-76397774 None:intergenic 30.0%
ACAGAAATATTGTGATTGGT+TGG - Chr2:76396015-76396034 MsG0280010886.01.T01:intron 30.0%
ACTTTGTGTATATCACCATA+TGG + Chr2:76397697-76397716 None:intergenic 30.0%
CAAACTAACTTTCACTCATT+AGG - Chr2:76397643-76397662 MsG0280010886.01.T01:intron 30.0%
CACTCTCTTGTGTATATATA+TGG + Chr2:76398745-76398764 None:intergenic 30.0%
CATACTAATCTTGCATCAAA+TGG - Chr2:76397421-76397440 MsG0280010886.01.T01:three_prime_UTR 30.0%
CATATATATACACAAGAGAG+TGG - Chr2:76398743-76398762 MsG0280010886.01.T01:intron 30.0%
CTAATGAGTGAAAGTTAGTT+TGG + Chr2:76397645-76397664 None:intergenic 30.0%
GAAAATCCAAATAGTCTACA+AGG + Chr2:76397944-76397963 None:intergenic 30.0%
GAAAATGACATTATGGTTGT+TGG - Chr2:76398273-76398292 MsG0280010886.01.T01:intron 30.0%
GATTAGTATGTCTTAGAGAA+TGG + Chr2:76397411-76397430 None:intergenic 30.0%
GATTATATTGCATAGAGACA+AGG + Chr2:76398911-76398930 None:intergenic 30.0%
GTAAATCCTTGTAGACTATT+TGG - Chr2:76397935-76397954 MsG0280010886.01.T01:intron 30.0%
TATATCACCATATGGAAAAG+AGG + Chr2:76397689-76397708 None:intergenic 30.0%
TATGGTGATATACACAAAGT+TGG - Chr2:76397697-76397716 MsG0280010886.01.T01:three_prime_UTR 30.0%
TGACAGTGAAAATGACATTA+TGG - Chr2:76398266-76398285 MsG0280010886.01.T01:intron 30.0%
TGATCTAAACCTTAACTCTT+GGG - Chr2:76397576-76397595 MsG0280010886.01.T01:intron 30.0%
TTGATCTAAACCTTAACTCT+TGG - Chr2:76397575-76397594 MsG0280010886.01.T01:intron 30.0%
TTGATTAAGCTCTCATCATT+TGG + Chr2:76396988-76397007 None:intergenic 30.0%
TTTAGTAAAACTTACTGCCA+TGG + Chr2:76398306-76398325 None:intergenic 30.0%
! AATGGTTTTCTAACTTACAC+TGG + Chr2:76398500-76398519 None:intergenic 30.0%
! CAAAATTCCTCTTTTCCATA+TGG - Chr2:76397679-76397698 MsG0280010886.01.T01:three_prime_UTR 30.0%
! CTTTTAGCATACTTTTGGTA+AGG + Chr2:76396590-76396609 None:intergenic 30.0%
! TAATTTTCTGACCTGAAAGT+TGG - Chr2:76395854-76395873 MsG0280010886.01.T01:intron 30.0%
! TGATGCTTTTAGCATACTTT+TGG + Chr2:76396595-76396614 None:intergenic 30.0%
!! AAACATGAACATGCTTTTTG+CGG + Chr2:76396425-76396444 None:intergenic 30.0%
AAAGCTATCTGTGATTACAC+AGG - Chr2:76397010-76397029 MsG0280010886.01.T01:three_prime_UTR 35.0%
AAATATACCATTGAGATCCC+TGG - Chr2:76397543-76397562 MsG0280010886.01.T01:intron 35.0%
AGTGAACTAGAGAGACTATT+TGG - Chr2:76398193-76398212 MsG0280010886.01.T01:CDS 35.0%
ATAAATGGCCCAAGTCAAAA+TGG - Chr2:76396802-76396821 MsG0280010886.01.T01:three_prime_UTR 35.0%
ATGTGAGAAGCTAACTTTGT+AGG + Chr2:76395587-76395606 None:intergenic 35.0%
GAAAACGGAGAGTTAAGATT+GGG - Chr2:76396297-76396316 MsG0280010886.01.T01:three_prime_UTR 35.0%
GAATGAAGGTTCACAAACAA+GGG - Chr2:76398112-76398131 MsG0280010886.01.T01:intron 35.0%
GATCTAAACCTTAACTCTTG+GGG - Chr2:76397577-76397596 MsG0280010886.01.T01:intron 35.0%
GGAAATGAAGTTGGAATATC+AGG - Chr2:76397809-76397828 MsG0280010886.01.T01:three_prime_UTR 35.0%
TACATACTTGTGACACTGTT+TGG - Chr2:76395758-76395777 MsG0280010886.01.T01:three_prime_UTR 35.0%
TAGTGTCATACTCATACCAA+AGG + Chr2:76395695-76395714 None:intergenic 35.0%
TATGACACTATGAGTCTGTT+TGG - Chr2:76395705-76395724 MsG0280010886.01.T01:three_prime_UTR 35.0%
TCCGGTACACCAATTAAAAA+CGG - Chr2:76398429-76398448 MsG0280010886.01.T01:intron 35.0%
TCGACAGATTGAATGTTCAA+GGG + Chr2:76397115-76397134 None:intergenic 35.0%
TGAAAACGGAGAGTTAAGAT+TGG - Chr2:76396296-76396315 MsG0280010886.01.T01:three_prime_UTR 35.0%
TGAATGAAGGTTCACAAACA+AGG - Chr2:76398111-76398130 MsG0280010886.01.T01:intron 35.0%
TGACAAAAATTTCAACGCGA+AGG - Chr2:76397913-76397932 MsG0280010886.01.T01:CDS 35.0%
TGATGATAACCAGAGTTGTT+TGG - Chr2:76398791-76398810 MsG0280010886.01.T01:intron 35.0%
TGATTTAATGGCTGAAACGA+TGG + Chr2:76398364-76398383 None:intergenic 35.0%
TTAGGACACATAAGTGTTAG+TGG + Chr2:76397234-76397253 None:intergenic 35.0%
TTCAATAGGACAACTCATTC+AGG + Chr2:76398621-76398640 None:intergenic 35.0%
TTCACCTACCTCGATAAATA+TGG + Chr2:76395995-76396014 None:intergenic 35.0%
TTCCATGTGTAATCTTTGTC+AGG - Chr2:76396068-76396087 MsG0280010886.01.T01:intron 35.0%
TTCGACAGATTGAATGTTCA+AGG + Chr2:76397116-76397135 None:intergenic 35.0%
TTCTCTAGTTGGAAATTGGT+TGG + Chr2:76397751-76397770 None:intergenic 35.0%
TTGAACATTCAATCTGTCGA+AGG - Chr2:76397115-76397134 MsG0280010886.01.T01:three_prime_UTR 35.0%
TTGGATTCATACCAGTGATA+AGG + Chr2:76397186-76397205 None:intergenic 35.0%
! AGCCAAAAGAATCTTGTTTC+TGG - Chr2:76396137-76396156 MsG0280010886.01.T01:intron 35.0%
! ATTTGGATTTTCCTTATCGG+CGG - Chr2:76397952-76397971 MsG0280010886.01.T01:intron 35.0%
! CATTTTGAATCTTGTCCCTA+TGG + Chr2:76396629-76396648 None:intergenic 35.0%
! GATATACACAAAGTTGGTCA+AGG - Chr2:76397703-76397722 MsG0280010886.01.T01:three_prime_UTR 35.0%
! GCCAAAAGAATCTTGTTTCT+GGG - Chr2:76396138-76396157 MsG0280010886.01.T01:intron 35.0%
! GTGATTTGGATCCCTATAAA+TGG - Chr2:76396787-76396806 MsG0280010886.01.T01:three_prime_UTR 35.0%
! GTTAGTTTGGTTCATTATGC+AGG + Chr2:76397632-76397651 None:intergenic 35.0%
! TAGTTGGAAATTGGTTGGTT+TGG + Chr2:76397746-76397765 None:intergenic 35.0%
! TCATTTTCACTGTCATGTAG+AGG + Chr2:76398261-76398280 None:intergenic 35.0%
! TGAAGATTGTTTTCCTCCTT+TGG - Chr2:76395676-76395695 MsG0280010886.01.T01:three_prime_UTR 35.0%
! TGGTTACCAACAATTGATTC+AGG + Chr2:76396357-76396376 None:intergenic 35.0%
! TTCATGTTTTCTACAGTCCA+AGG - Chr2:76396436-76396455 MsG0280010886.01.T01:three_prime_UTR 35.0%
!! CCAAAAGAATCTTGTTTCTG+GGG - Chr2:76396139-76396158 MsG0280010886.01.T01:intron 35.0%
!! TCCGTTTTTAATTGGTGTAC+CGG + Chr2:76398433-76398452 None:intergenic 35.0%
!! TTTGACTTGGGCCATTTATA+GGG + Chr2:76396801-76396820 None:intergenic 35.0%
!!! AAGCATCTCCATTTTGACTT+GGG + Chr2:76396813-76396832 None:intergenic 35.0%
!!! TTTTGACTTGGGCCATTTAT+AGG + Chr2:76396802-76396821 None:intergenic 35.0%
ACAAACAAGGGAGCTTAGTT+GGG - Chr2:76398124-76398143 MsG0280010886.01.T01:intron 40.0%
ACAGATTGAATGTTCAAGGG+AGG + Chr2:76397112-76397131 None:intergenic 40.0%
ACTAGAGAGACTATTTGGCA+TGG - Chr2:76398198-76398217 MsG0280010886.01.T01:CDS 40.0%
AGAGTGGAGAAGATGACAAT+TGG - Chr2:76398759-76398778 MsG0280010886.01.T01:intron 40.0%
AGCATTAGCCACTGAAGAAA+AGG + Chr2:76396398-76396417 None:intergenic 40.0%
AGGTGCATTGGAAATGAAGT+TGG - Chr2:76397800-76397819 MsG0280010886.01.T01:three_prime_UTR 40.0%
AGTGACTGGAATGAGTGATT+TGG - Chr2:76396773-76396792 MsG0280010886.01.T01:three_prime_UTR 40.0%
ATACCAGTGATAAGGTGACT+GGG + Chr2:76397178-76397197 None:intergenic 40.0%
ATAGAGATCCATGAGCAGTA+AGG + Chr2:76396269-76396288 None:intergenic 40.0%
ATCAAGATAGAGTCTCTCCT+TGG - Chr2:76397062-76397081 MsG0280010886.01.T01:three_prime_UTR 40.0%
ATGTCTTGCAGTTGTAGTAG+CGG - Chr2:76396747-76396766 MsG0280010886.01.T01:three_prime_UTR 40.0%
ATTACTTCTCCGAGTTTACG+AGG - Chr2:76397454-76397473 MsG0280010886.01.T01:three_prime_UTR 40.0%
ATTGAGCAGCTACAATGATC+TGG - Chr2:76398168-76398187 MsG0280010886.01.T01:CDS 40.0%
CACTATGAGTCTGTTTGGAT+TGG - Chr2:76395710-76395729 MsG0280010886.01.T01:three_prime_UTR 40.0%
CAGATTGAATGTTCAAGGGA+GGG + Chr2:76397111-76397130 None:intergenic 40.0%
CCACTGAAGAAAAGGAAACT+AGG + Chr2:76396390-76396409 None:intergenic 40.0%
CTGAAGTCTGCATAACTAGA+AGG + Chr2:76397486-76397505 None:intergenic 40.0%
GACCTGACAAAGATTACACA+TGG + Chr2:76396073-76396092 None:intergenic 40.0%
GAGTGGAGAAGATGACAATT+GGG - Chr2:76398760-76398779 MsG0280010886.01.T01:intron 40.0%
GCTCAATCTTGAGAGATCAA+TGG + Chr2:76398155-76398174 None:intergenic 40.0%
GGAAACTAGGAGAAAAACTC+TGG + Chr2:76396377-76396396 None:intergenic 40.0%
GGTCTTCCTGAATCAATTGT+TGG - Chr2:76396348-76396367 MsG0280010886.01.T01:three_prime_UTR 40.0%
GTCAAAATGGAGATGCTTGA+TGG - Chr2:76396815-76396834 MsG0280010886.01.T01:three_prime_UTR 40.0%
GTGTATGTTCCAAACAACTC+TGG + Chr2:76398803-76398822 None:intergenic 40.0%
GTTATAGCTGACCTTCTTTC+TGG + Chr2:76396673-76396692 None:intergenic 40.0%
TAAGAGATCCTGACAAAGGA+TGG - Chr2:76398230-76398249 MsG0280010886.01.T01:intron 40.0%
TATACTCCTTCAGCTCAGAT+AGG - Chr2:76397780-76397799 MsG0280010886.01.T01:three_prime_UTR 40.0%
TATCCGCTAATCAAGTACCT+TGG + Chr2:76396456-76396475 None:intergenic 40.0%
TCAAGATAGAGTCTCTCCTT+GGG - Chr2:76397063-76397082 MsG0280010886.01.T01:three_prime_UTR 40.0%
TCGTCGGATCATCATTCAAT+GGG - Chr2:76398551-76398570 MsG0280010886.01.T01:CDS 40.0%
TCTCTATGTAGGGGTGAAAA+CGG - Chr2:76396282-76396301 MsG0280010886.01.T01:three_prime_UTR 40.0%
TGAGTCTATAAGATCGACCA+AGG - Chr2:76397302-76397321 MsG0280010886.01.T01:intron 40.0%
TGCTAAAAGAAGTTGCACGA+AGG - Chr2:76398004-76398023 MsG0280010886.01.T01:intron 40.0%
TGCTCATGGATCTCTATGTA+GGG - Chr2:76396272-76396291 MsG0280010886.01.T01:three_prime_UTR 40.0%
TGGATGAATCTCCAGAAAGA+AGG - Chr2:76396659-76396678 MsG0280010886.01.T01:three_prime_UTR 40.0%
TGGCTATGACTTATGTTGTC+CGG - Chr2:76398411-76398430 MsG0280010886.01.T01:intron 40.0%
TGTCATACTCATACCAAAGG+AGG + Chr2:76395692-76395711 None:intergenic 40.0%
TTACTTCTCCGAGTTTACGA+GGG - Chr2:76397455-76397474 MsG0280010886.01.T01:three_prime_UTR 40.0%
TTCGCCATATTTATCGAGGT+AGG - Chr2:76395988-76396007 MsG0280010886.01.T01:intron 40.0%
TTGGTAAGGCACAACGAAAT+CGG + Chr2:76396576-76396595 None:intergenic 40.0%
TTTGCAACAAGCTCTTGAGA+GGG + Chr2:76395942-76395961 None:intergenic 40.0%
! ACATACACCATTGATTGTGG+AGG - Chr2:76398815-76398834 MsG0280010886.01.T01:intron 40.0%
! AGTCCAAGGTACTTGATTAG+CGG - Chr2:76396450-76396469 MsG0280010886.01.T01:three_prime_UTR 40.0%
! CCCCAGAAACAAGATTCTTT+TGG + Chr2:76396142-76396161 None:intergenic 40.0%
! CCTAGTTTCCTTTTCTTCAG+TGG - Chr2:76396387-76396406 MsG0280010886.01.T01:three_prime_UTR 40.0%
! CTTCTAAGAGATCCTGACAA+AGG - Chr2:76398226-76398245 MsG0280010886.01.T01:intron 40.0%
! CTTCTAGTTATGCAGACTTC+AGG - Chr2:76397484-76397503 MsG0280010886.01.T01:intron 40.0%
! GACTGAGAGAGCTTTTGAAT+TGG - Chr2:76396196-76396215 MsG0280010886.01.T01:intron 40.0%
! GGAACATACACCATTGATTG+TGG - Chr2:76398812-76398831 MsG0280010886.01.T01:intron 40.0%
! TATGCGTTGGCAAATTGTCA+AGG + Chr2:76398079-76398098 None:intergenic 40.0%
! TTCGTGCAACTTCTTTTAGC+AGG + Chr2:76398005-76398024 None:intergenic 40.0%
! TTTGAAGCCTCCACAATCAA+TGG + Chr2:76398825-76398844 None:intergenic 40.0%
! TTTTGCAACAAGCTCTTGAG+AGG + Chr2:76395943-76395962 None:intergenic 40.0%
!! TGGTTTTACCCCAAGAGTTA+AGG + Chr2:76397588-76397607 None:intergenic 40.0%
!!! CAAGCATCTCCATTTTGACT+TGG + Chr2:76396814-76396833 None:intergenic 40.0%
!!! CAAGGGCATCCGTTTTTAAT+TGG + Chr2:76398441-76398460 None:intergenic 40.0%
AAGGCTGAAAAAACTGCGGA+CGG - Chr2:76397134-76397153 MsG0280010886.01.T01:three_prime_UTR 45.0%
AATCTTGTCCCTATGGTCAG+TGG + Chr2:76396622-76396641 None:intergenic 45.0%
AATCTTTGTCAGGTCAGCCA+AGG - Chr2:76396078-76396097 MsG0280010886.01.T01:intron 45.0%
AATGCACCTATCTGAGCTGA+AGG + Chr2:76397789-76397808 None:intergenic 45.0%
ACAGCAGACAATCGAAGTCA+AGG + Chr2:76398459-76398478 None:intergenic 45.0%
AGAAAAACCTCCATGAGTGC+TGG + Chr2:76395639-76395658 None:intergenic 45.0%
AGAACTCACTGCAGGCAAAA+GGG + Chr2:76398703-76398722 None:intergenic 45.0%
AGGATTCTCCATCCTTTGTC+AGG + Chr2:76398241-76398260 None:intergenic 45.0%
ATCAGAACCCACTGACCATA+GGG - Chr2:76396611-76396630 MsG0280010886.01.T01:three_prime_UTR 45.0%
ATCTTGTCCCTATGGTCAGT+GGG + Chr2:76396621-76396640 None:intergenic 45.0%
ATGAGCAGTAAGGTACATGC+AGG + Chr2:76396259-76396278 None:intergenic 45.0%
CACAAACAAGGGAGCTTAGT+TGG - Chr2:76398123-76398142 MsG0280010886.01.T01:intron 45.0%
CAGCAGACAATCGAAGTCAA+GGG + Chr2:76398458-76398477 None:intergenic 45.0%
CATAACACAGAACTCACTGC+AGG + Chr2:76398711-76398730 None:intergenic 45.0%
CATACCAGTGATAAGGTGAC+TGG + Chr2:76397179-76397198 None:intergenic 45.0%
CCTGAAAGTTGGAAGTTCGA+AGG - Chr2:76395865-76395884 MsG0280010886.01.T01:intron 45.0%
CCTTCGAACTTCCAACTTTC+AGG + Chr2:76395868-76395887 None:intergenic 45.0%
CTGCAGTGAGTTCTGTGTTA+TGG - Chr2:76398709-76398728 MsG0280010886.01.T01:intron 45.0%
CTGCTCATGGATCTCTATGT+AGG - Chr2:76396271-76396290 MsG0280010886.01.T01:three_prime_UTR 45.0%
CTTGTTGCAAAAGACCTGCA+TGG - Chr2:76395951-76395970 MsG0280010886.01.T01:intron 45.0%
GAAAGTTGGAAGTTCGAAGG+TGG - Chr2:76395868-76395887 MsG0280010886.01.T01:intron 45.0%
GAGAGACTATTTGGCATGGA+AGG - Chr2:76398202-76398221 MsG0280010886.01.T01:intron 45.0%
GATTCAGGAAGACCGTTTCT+CGG + Chr2:76396342-76396361 None:intergenic 45.0%
GCAGGTTCTGTAGATTTGTG+AGG + Chr2:76397987-76398006 None:intergenic 45.0%
GCTCAATATCCTCATCCCAT+CGG + Chr2:76397037-76397056 None:intergenic 45.0%
GCTCATGGATCTCTATGTAG+GGG - Chr2:76396273-76396292 MsG0280010886.01.T01:three_prime_UTR 45.0%
GCTTCAAAGTCTTCCTCAGT+GGG - Chr2:76398837-76398856 MsG0280010886.01.T01:intron 45.0%
GGTTCTGTAGATTTGTGAGG+TGG + Chr2:76397984-76398003 None:intergenic 45.0%
GTCGAAGGCTGAAAAAACTG+CGG - Chr2:76397130-76397149 MsG0280010886.01.T01:three_prime_UTR 45.0%
GTCGTCGGATCATCATTCAA+TGG - Chr2:76398550-76398569 MsG0280010886.01.T01:CDS 45.0%
GTGTTTGGATGACAAAGAGC+CGG - Chr2:76395523-76395542 MsG0280010886.01.T01:three_prime_UTR 45.0%
GTTCATCCAGAATGAGTCGT+CGG - Chr2:76398535-76398554 MsG0280010886.01.T01:CDS 45.0%
TACCAGTGATAAGGTGACTG+GGG + Chr2:76397177-76397196 None:intergenic 45.0%
TAGATCAACCTTTCCTGCCA+GGG + Chr2:76397563-76397582 None:intergenic 45.0%
TCTTGACCTTGCAAGAACCT+TGG + Chr2:76397322-76397341 None:intergenic 45.0%
TGCATGTACCTTACTGCTCA+TGG - Chr2:76396258-76396277 MsG0280010886.01.T01:three_prime_UTR 45.0%
TGTAGTAGCGGTATAGTGAC+TGG - Chr2:76396759-76396778 MsG0280010886.01.T01:three_prime_UTR 45.0%
TGTGATTACACAGGTCCGAT+GGG - Chr2:76397019-76397038 MsG0280010886.01.T01:three_prime_UTR 45.0%
TTAGATCAACCTTTCCTGCC+AGG + Chr2:76397564-76397583 None:intergenic 45.0%
TTCAGCTCAGATAGGTGCAT+TGG - Chr2:76397788-76397807 MsG0280010886.01.T01:three_prime_UTR 45.0%
! TAGAAAGGCGTACGCTTCAA+CGG + Chr2:76396940-76396959 None:intergenic 45.0%
AAGAATCTGCTGTCCCACTG+AGG + Chr2:76398853-76398872 None:intergenic 50.0%
AAGGGAGGGAGAGAAGTAGA+CGG + Chr2:76397097-76397116 None:intergenic 50.0%
AGGCTGAAAAAACTGCGGAC+GGG - Chr2:76397135-76397154 MsG0280010886.01.T01:three_prime_UTR 50.0%
AGGCTGAACCCTCGTAAACT+CGG + Chr2:76397466-76397485 None:intergenic 50.0%
AGGTTTAGAAGCAGGTGGAG+AGG - Chr2:76395547-76395566 MsG0280010886.01.T01:three_prime_UTR 50.0%
ATACCATTGAGATCCCTGGC+AGG - Chr2:76397547-76397566 MsG0280010886.01.T01:intron 50.0%
ATTGAGATCCCTGGCAGGAA+AGG - Chr2:76397552-76397571 MsG0280010886.01.T01:intron 50.0%
ATTTCCACTCCACACCATGC+AGG + Chr2:76395968-76395987 None:intergenic 50.0%
ATTTCTGCTGCTGCGTCTCT+AGG - Chr2:76397869-76397888 MsG0280010886.01.T01:CDS 50.0%
CAGAACTCACTGCAGGCAAA+AGG + Chr2:76398704-76398723 None:intergenic 50.0%
CATCAGAACCCACTGACCAT+AGG - Chr2:76396610-76396629 MsG0280010886.01.T01:three_prime_UTR 50.0%
CCACCTGCTTCTAAACCTTC+CGG + Chr2:76395545-76395564 None:intergenic 50.0%
CCTGCAGCTTCTGCTTGTTT+CGG + Chr2:76397844-76397863 None:intergenic 50.0%
CGTCTCTAGGTGCAAACTTG+AGG - Chr2:76397882-76397901 MsG0280010886.01.T01:CDS 50.0%
CTGTGATTACACAGGTCCGA+TGG - Chr2:76397018-76397037 MsG0280010886.01.T01:three_prime_UTR 50.0%
CTTGCAAGACCCTAGGAAAC+CGG + Chr2:76397517-76397536 None:intergenic 50.0%
GATCGACCAAGGTTCTTGCA+AGG - Chr2:76397313-76397332 MsG0280010886.01.T01:intron 50.0%
GATGATCCGACGACTCATTC+TGG + Chr2:76398544-76398563 None:intergenic 50.0%
GCAGACTTCAGGAAACGAAC+CGG - Chr2:76397495-76397514 MsG0280010886.01.T01:intron 50.0%
GCGATGAAGATGGGGTGATT+AGG + Chr2:76397252-76397271 None:intergenic 50.0%
GGCTTCAAAGTCTTCCTCAG+TGG - Chr2:76398836-76398855 MsG0280010886.01.T01:intron 50.0%
GGTTTAGAAGCAGGTGGAGA+GGG - Chr2:76395548-76395567 MsG0280010886.01.T01:three_prime_UTR 50.0%
TCTCCAGCTGCGATGAAGAT+GGG + Chr2:76397261-76397280 None:intergenic 50.0%
TCTGATACCAGCACTCATGG+AGG - Chr2:76395629-76395648 MsG0280010886.01.T01:three_prime_UTR 50.0%
TCTTGACCTTGCAAGACCCT+AGG + Chr2:76397524-76397543 None:intergenic 50.0%
TGCAAAAGACCTGCATGGTG+TGG - Chr2:76395956-76395975 MsG0280010886.01.T01:intron 50.0%
TGGTTGTTGGGGATGATCCA+TGG - Chr2:76398286-76398305 MsG0280010886.01.T01:intron 50.0%
TTGGATGACAAAGAGCCGGA+AGG - Chr2:76395527-76395546 MsG0280010886.01.T01:three_prime_UTR 50.0%
TTTCCTGCCAGGGATCTCAA+TGG + Chr2:76397553-76397572 None:intergenic 50.0%
! AGCTGGAGACAGTGGGTTTA+TGG - Chr2:76397272-76397291 MsG0280010886.01.T01:intron 50.0%
! AGGAAACGAACCGGTTTCCT+AGG - Chr2:76397504-76397523 MsG0280010886.01.T01:intron 50.0%
! GGAAACGAACCGGTTTCCTA+GGG - Chr2:76397505-76397524 MsG0280010886.01.T01:intron 50.0%
! TGGATTTTCCTTATCGGCGG+CGG - Chr2:76397955-76397974 MsG0280010886.01.T01:intron 50.0%
!! TCCATGAGTGCTGGTATCAG+AGG + Chr2:76395630-76395649 None:intergenic 50.0%
AAGACCTGCATGGTGTGGAG+TGG - Chr2:76395961-76395980 MsG0280010886.01.T01:intron 55.0%
AGAGCTGCTCGACCGAGAAA+CGG - Chr2:76396327-76396346 MsG0280010886.01.T01:three_prime_UTR 55.0%
CAATCTTCAGCAGCTCGACG+AGG + Chr2:76395665-76395684 None:intergenic 55.0%
CACCCCAGTCACCTTATCAC+TGG - Chr2:76397172-76397191 MsG0280010886.01.T01:three_prime_UTR 55.0%
CCGAAACAAGCAGAAGCTGC+AGG - Chr2:76397841-76397860 MsG0280010886.01.T01:exon 55.0%
CCGGAAGGTTTAGAAGCAGG+TGG - Chr2:76395542-76395561 MsG0280010886.01.T01:three_prime_UTR 55.0%
CGGTTTCCTAGGGTCTTGCA+AGG - Chr2:76397515-76397534 MsG0280010886.01.T01:intron 55.0%
CTCCAGCTGCGATGAAGATG+GGG + Chr2:76397260-76397279 None:intergenic 55.0%
CTTTGTCAGGTCAGCCAAGG+AGG - Chr2:76396081-76396100 MsG0280010886.01.T01:intron 55.0%
GAGCCGGAAGGTTTAGAAGC+AGG - Chr2:76395539-76395558 MsG0280010886.01.T01:three_prime_UTR 55.0%
GCCTCTGATACCAGCACTCA+TGG - Chr2:76395626-76395645 MsG0280010886.01.T01:three_prime_UTR 55.0%
GGGACGCAGTGCTCTTTCTA+AGG - Chr2:76396159-76396178 MsG0280010886.01.T01:intron 55.0%
GTACGCTTCAACGGCACAGT+TGG + Chr2:76396931-76396950 None:intergenic 55.0%
GTAGACGGATCGATCTCCCA+AGG + Chr2:76397082-76397101 None:intergenic 55.0%
GTAGTGAGCAGATGCCTCCT+TGG + Chr2:76396098-76396117 None:intergenic 55.0%
GTCTCCAGCTGCGATGAAGA+TGG + Chr2:76397262-76397281 None:intergenic 55.0%
TACACAGGTCCGATGGGATG+AGG - Chr2:76397025-76397044 MsG0280010886.01.T01:three_prime_UTR 55.0%
TCATCGCAGCTGGAGACAGT+GGG - Chr2:76397265-76397284 MsG0280010886.01.T01:intron 55.0%
TTCATCGCAGCTGGAGACAG+TGG - Chr2:76397264-76397283 MsG0280010886.01.T01:intron 55.0%
!! AGGAGGCATCTGCTCACTAC+TGG - Chr2:76396098-76396117 MsG0280010886.01.T01:intron 55.0%
CACCCCATCTTCATCGCAGC+TGG - Chr2:76397255-76397274 MsG0280010886.01.T01:intron 60.0%
GAAGCAGGTGGAGAGGGAGA+TGG - Chr2:76395554-76395573 MsG0280010886.01.T01:three_prime_UTR 60.0%
GGCATCTGCTCACTACTGGC+TGG - Chr2:76396102-76396121 MsG0280010886.01.T01:intron 60.0%
GGTGGTTTCCGCCGCCGATA+AGG + Chr2:76397966-76397985 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 76395521 76398991 76395521 ID=MsG0280010886.01;Name=MsG0280010886.01
Chr2 mRNA 76395521 76398991 76395521 ID=MsG0280010886.01.T01;Parent=MsG0280010886.01;Name=MsG0280010886.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.71|0.75|1|0.57|0.5|8|1656|158
Chr2 exon 76395521 76395797 76395521 ID=MsG0280010886.01.T01:exon:11853;Parent=MsG0280010886.01.T01
Chr2 exon 76396202 76397238 76396202 ID=MsG0280010886.01.T01:exon:11852;Parent=MsG0280010886.01.T01
Chr2 exon 76397319 76397480 76397319 ID=MsG0280010886.01.T01:exon:11851;Parent=MsG0280010886.01.T01
Chr2 exon 76397676 76397950 76397676 ID=MsG0280010886.01.T01:exon:11850;Parent=MsG0280010886.01.T01
Chr2 exon 76398143 76398219 76398143 ID=MsG0280010886.01.T01:exon:11849;Parent=MsG0280010886.01.T01
Chr2 exon 76398332 76398422 76398332 ID=MsG0280010886.01.T01:exon:11848;Parent=MsG0280010886.01.T01
Chr2 exon 76398507 76398590 76398507 ID=MsG0280010886.01.T01:exon:11847;Parent=MsG0280010886.01.T01
Chr2 exon 76398862 76398991 76398862 ID=MsG0280010886.01.T01:exon:11846;Parent=MsG0280010886.01.T01
Chr2 CDS 76398862 76398991 76398862 ID=MsG0280010886.01.T01:cds;Parent=MsG0280010886.01.T01
Chr2 CDS 76398507 76398590 76398507 ID=MsG0280010886.01.T01:cds;Parent=MsG0280010886.01.T01
Chr2 CDS 76398332 76398422 76398332 ID=MsG0280010886.01.T01:cds;Parent=MsG0280010886.01.T01
Chr2 CDS 76398143 76398219 76398143 ID=MsG0280010886.01.T01:cds;Parent=MsG0280010886.01.T01
Chr2 CDS 76397856 76397950 76397856 ID=MsG0280010886.01.T01:cds;Parent=MsG0280010886.01.T01
Chr2 three_prime_UTR 76397676 76397855 76397676 ID=MsG0280010886.01.T01:three_prime_utr;Parent=MsG0280010886.01.T01
Chr2 three_prime_UTR 76397319 76397480 76397319 ID=MsG0280010886.01.T01:three_prime_utr;Parent=MsG0280010886.01.T01
Chr2 three_prime_UTR 76396202 76397238 76396202 ID=MsG0280010886.01.T01:three_prime_utr;Parent=MsG0280010886.01.T01
Chr2 three_prime_UTR 76395521 76395797 76395521 ID=MsG0280010886.01.T01:three_prime_utr;Parent=MsG0280010886.01.T01
Gene Sequence

>MsG0280010886.01.T01

ATGTGTTTGGATGACAAAGAGCCGGAAGGTTTAGAAGCAGGTGGAGAGGGAGATGGAAGATCGCCTACAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGATTAAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTATCGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTGCTTTTGTTAGCCAAAAGAATCTTGTTTCTGGGGACGCAGTGCTCTTTCTAAGGGGTGAAAACGGAGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAACGGTCTTCCTGAATCAATTGTTGAGCTAGACATGCCGATTTCGTTGTGCCTTACCAAAAGTATGCTAAAAGCATCAGAACCCACTGACCATAGGGACAAGATTCAAAATGAAATTTGA

Protein sequence

>MsG0280010886.01.T01

MCLDDKEPEGLEAGGEGDGRSPTKLASHMFCKTLTASDTSTHGGLKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVELDMPISLCLTKSMLKASEPTDHRDKIQNEI*